Projects: pypi: pairsnp
https://packages.ecosyste.ms/registries/pypi.org/packages/pairsnp
A simple package for calculating pairwise SNP distances
5 versions
Latest release: over 7 years ago
30 downloads last month
Enhanced Analysis
Educational Contributors:
gqt20@cam.ac.uk
Repository Activity:
Repository Owner:
Gerry Tonkin-Hill (user)
Postdoctoral Fellow at the University of Oslo | previously at the Sanger Institute | pathogen genomics, statistics, machine learning Academic
Postdoctoral Fellow at the University of Oslo | previously at the Sanger Institute | pathogen genomics, statistics, machine learning Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning pairsnp 3
10.1186/s12866-021-02228-9
Genomic analysis of group B Streptococcus from milk demonstrates the need for improved biosecurity: a cross-sectional study of pastoralist camels in KenyaCited by: 3
Author(s): Dinah Seligsohn, Chiara Crestani, Taya Forde, Erika Chenais, Ruth N. Zadoks
Software Mentions: 3
Published: about 5 years ago
10.1016/S2666-5247(21)00117-8
Defining nosocomial transmission of Escherichia coli and antimicrobial resistance genes: a genomic surveillance studyCited by: 31
Author(s): Catherine Ludden, Francesc Español i Coll, Theodore Gouliouris, Olivier Restif, Beth Blane, Grace A. Blackwell, Narender Kumar, Plamena Naydenova, Charles Crawley, Nicholas M. Brown, Julian Parkhill, Sharon J. Peacock
Software Mentions: 2
Published: about 5 years ago
10.7554/eLife.66857
Patterns of within-host genetic diversity in SARS-CoV-2Cited by: 96
Author(s): Gerry Tonkin‐Hill, Iñigo Martincorena, Roberto Amato, Andrew Lawson, Moritz Gerstung, Ian Johnston, David Jackson, Naomi Park, Stefanie Lensing, Michael A. Quail, Sónia Gonçalves, Cristina V. Ariani, Michael Spencer Chapman, William L. Hamilton, Luke W. Meredith, Grant Hall, Aminu S. Jahun, Yasmin Chaudhry, Myra Hosmillo, Malte L. Pinckert, Iliana Georgana, Anna Yakovleva, Laura Caller, Sarah Caddy, Theresa Feltwell, Fahad Khokhar, Charlotte J. Houldcroft, Martin D. Curran, Surendra Parmar, Alex Alderton, Andrew Nelson, Ewan M. Harrison, John Sillitoe, Stephen D. Bentley, Jeffrey C. Barrett, M. Estée Török, Ian Goodfellow, Cordelia Langford, Dominic Kwiatkowski
Software Mentions: 1
Published: about 5 years ago