pypi: oligo | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-29847-z

The reciprocal interplay between TNFα and the circadian clock impacts on cell proliferation and migration in Hodgkin lymphoma cells
Cited by: 26
Author(s): Marconi Abreu, Alireza Basti, Nikolaï Genov, Gianluigi Mazzoccoli, Angela Relógio
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-38310-y

Msx1 loss suppresses formation of the ectopic crypts developed in the Apc-deficient small intestinal epithelium
Cited by: 5
Author(s): Monika Horázná, Lucie Janečková, Jiří Švec, Oľga Babošová, Dušan Hrčkulák, Martina Vojtěchová, Kateřina Galušková, Eva Šloncová, Michal Kolář, Hynek Strnad, Vladimír Kořínek
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-74947-4

Pancreatic duct ligation reduces premalignant pancreatic lesions in a Kras model of pancreatic adenocarcinoma in mice
Cited by: 4
Author(s): Marta Cáceres, Rita Quesada, Mar Iglesias, Francisco X. Real, María Villamonte, Jaime Martínez de Villarreal, M.E. Ruíz Pérez, Anna Andaluz, Xavier Moll, Enrique Berjano, Dimitri Dorcaratto, Patricia Sánchez-Velázquez, Luís Grande, Fernando Burdı́o
Software Mentions: 4
Published: about 4 years ago

10.1155/2018/1243858

Characterization of Transcription Termination-Associated RNAs: New Insights into their Biogenesis, Tailing, and Expression in Primary Tumors
Cited by: 4
Author(s): Ilaria Laudadio, Sara Formichetti, Silvia Gioiosa, Filippos Klironomos, Nikolaus Rajewsky, Giuseppe Macino, Claudia Carissimi, Valerio Fulci
Software Mentions: 4
Published: almost 7 years ago

10.1002/JLB.3A0617-261R

Effects of anti-inflammatory drugs on the expression of tryptophan-metabolism genes by human macrophages
Cited by: 22
Author(s): Tim Regan, Andrew C. Gill, Sara Clohisey, Mark W. Barnett, Carmine M. Pariante, Neil A. Harrison, David Hume, Edward T. Bullmore, Tom C. Freeman
Software Mentions: 4
Published: almost 7 years ago

10.7554/eLife.63838

Inducible mechanisms of disease tolerance provide an alternative strategy of acquired immunity to malaria
Cited by: 39
Author(s): Wiebke Nahrendorf, Alasdair Ivens, Philip J. Spence
Software Mentions: 4
Published: over 3 years ago

10.3390/ijms21062249

AHR Signaling Dampens Inflammatory Signature in Neonatal Skin γδ T Cells
Cited by: 11
Author(s): Katja Merches, Alfonso Schiavi, Heike Weighardt, Swantje Steinwachs, Nadine Teichweyde, Irmgard Förster, K Hochrath, Beatrix Schumak, Natascia Ventura, Patrick Petzsch, Karl Köhrer, Charlotte Esser
Software Mentions: 4
Published: over 4 years ago

10.3390/ijms21144865

Cytological and Gene Profile Expression Analysis Reveals Modification in Metabolic Pathways and Catalytic Activities Induce Resistance in Botrytis cinerea Against Iprodione Isolated From Tomato
Cited by: 4
Author(s): Ambreen Maqsood, Chaorong Wu, Sunny Ahmar, Haiyan Wu
Software Mentions: 4
Published: over 4 years ago

10.3390/ijms22031208

Transcriptomic Signatures and Upstream Regulation in Human Skeletal Muscle Adapted to Disuse and Aerobic Exercise
Cited by: 14
Author(s): Pavel A. Makhnovskii, Roman O. Bokov, Fedor A. Kolpakov, D. V. Popov
Software Mentions: 4
Published: almost 4 years ago

10.3390/ijms22041539

Non-Coding RNAs in the Transcriptional Network That Differentiates Skeletal Muscles of Sedentary from Long-Term Endurance- and Resistance-Trained Elderly
Cited by: 13
Author(s): Paola De Sanctis, Giuseppe Filardo, Provvidenza Maria Abruzzo, Annalisa Astolfi, Alessandra Bolotta, Valentina Indio, Alessandro Di Martino, Christian Höfer, Helmut Kern, Stefan Löefler, Maurilio Marcacci, Marina Marini, Sandra Zampieri, Cinzia Zucchini
Software Mentions: 4
Published: almost 4 years ago

10.3390/ijms221910814

ZNF521 Enhances MLL-AF9-Dependent Hematopoietic Stem Cell Transformation in Acute Myeloid Leukemias by Altering the Gene Expression Landscape
Cited by: 6
Author(s): Emanuela Chiarella, Annamaria Aloisio, Stefania Scicchitano, Katia Todoerti, Emanuela G. Cosentino, Daniela Lico, Antonino Neri, Nicola Amodio, Heather M. Bond, Maria Mesuraca
Software Mentions: 4
Published: about 3 years ago

10.18632/oncotarget.22475

Organotypic three-dimensional cancer cell cultures mirror drug responsesin vivo: lessons learned from the inhibition of EGFR signaling
Cited by: 35
Author(s): Nico Jacobi, Rita Seeboeck, Elisabeth Hofmann, Helmut Schweiger, Veronika Smolinská, Thomas Mohr, Alexandra Boyer, Wolfgang Sommergruber, P. Lechner, Corina Pichler-Huebschmann, Kamil Önder, Harald Hundsberger, Christoph Wiesner, Andreas Eger
Software Mentions: 4
Published: almost 7 years ago

10.18632/oncotarget.25965

Snail mediates repression of the Dlk1-Dio3 locus in lung tumor-infiltrating immune cells
Cited by: 4
Author(s): Svenja Groeneveld, Julien Faget, Nadine Zangger, Etienne Meylan
Software Mentions: 4
Published: about 6 years ago

10.1111/j.1399-0004.2011.01755.x

Corpus callosum abnormalities, intellectual disability, speech impairment, and autism in patients with haploinsufficiency of ARID1B
Cited by: 118
Author(s): Christina Halgren, Susanne Kjærgaard, Mads Bak, Christine Søholm Hansen, Zahra El-Schich, Claire Anderson, Karen Friis Henriksen, Helle Hjalgrim, Maria Kirchhoff, Emilia K. Bijlsma, Maartje Nielsen, Nicolette S. den Hollander, Claudia Ruivenkamp, Bertrand Isidor, Cédric Le Caignec, Raffaella Zannolli, Mafalda Mucciolo, Alessandra Renieri, Francesca Mari, Britt Marie Anderlid, J Andrieux, Anne Dieux, Niels Tommerup, Iben Bache
Software Mentions: 3
Published: about 13 years ago

10.3389/fimmu.2016.00558

Semaphorin 4C: A Novel Component of B-Cell Polarization in Th2-Driven Immune Responses
Cited by: 11
Author(s): Ding Xue, Marylin Desjardins, Gabriel N. Kaufman, Marianne Béland, Salem Al‐Tamemi, Eisha Ahmed, Shao Tao, Roland H. Friedel, Walid Mourad, Bruce Mazer
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12931-019-1147-2

Effect of short-term oral prednisone therapy on blood gene expression: a randomised controlled clinical trial
Cited by: 4
Author(s): Hiroto Takiguchi, Virginia Chen, Ma’en Obeidat, Zsuzsanna Hollander, J. Mark FitzGerald, Bruce M. McManus, Raymond T. Ng, Don D. Sin
Software Mentions: 3
Published: over 5 years ago

10.14814/phy2.12538

Deletion of glycerol channel aquaporin-9 (Aqp9 ) impairs long-term blood glucose control in C57BL/6 leptin receptor-deficient (db/db ) obese mice
Cited by: 14
Author(s): Peter Sartipy, Aakash Chawade, Sören Nielsén, Per Kjellbom, Michael Rützler
Software Mentions: 3
Published: about 9 years ago

10.1038/srep44497

Glycol porphyrin derivatives and temoporfin elicit resistance to photodynamic therapy by different mechanisms
Cited by: 18
Author(s): Jarmila Králová, Michal Kolář, Michal Kahle, Jaroslav Truksa, Sandra Lettlová, Kamila Balušíková, Petr Bartůněk
Software Mentions: 3
Published: over 7 years ago

10.1038/srep45101

Profiling the MAPK/ERK dependent and independent activity regulated transcriptional programs in the murine hippocampus in vivo
Cited by: 40
Author(s): Nils Blüthgen, Mirjam van Bentum, Barbara Merz, Dietmar Kuhl, Guido Hermey
Software Mentions: 3
Published: over 7 years ago

10.1038/srep45657

Acute effects of focused ultrasound-induced increases in blood-brain barrier permeability on rat microvascular transcriptome
Cited by: 89
Author(s): Dallan McMahon, Reina Bendayan, Kullervo Hynynen
Software Mentions: 3
Published: over 7 years ago

10.1111/j.1365-2958.2011.07760.x

Multimodal dynamic response of the Buchnera aphidicola pLeu plasmid to variations in leucine demand of its host, the pea aphid Acyrthosiphon pisum
Cited by: 20
Author(s): J. Viñuelas, Gérard Febvay, G. Duport, Stefano Colella, Jean‐Michel Fayard, Hubert Charles, Yvan Rahbé, Federica Calevro
Software Mentions: 3
Published: over 13 years ago

10.1002/mbo3.180

Colony morphology and transcriptome profiling of <scp>P</scp> seudomonas putida <scp>KT</scp> 2440 and its mutants deficient in alginate or all <scp>EPS</scp> synthesis under controlled matric potentials
Cited by: 18
Author(s): Gamze Gülez, Ali Altıntaş, Mustafa Fazli, Arnaud Dechesne, Christopher T. Workman, Tim Tolker‐Nielsen, Barth F. Smets
Software Mentions: 3
Published: over 10 years ago

10.1186/s12859-017-1564-5

Two-way learning with one-way supervision for gene expression data
Cited by: 3
Author(s): Monica Wong, David M. Mutch, Paul D. McNicholas
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-29708-9

Loss of function of miR-342-3p results in MCT1 over-expression and contributes to oncogenic metabolic reprogramming in triple negative breast cancer
Cited by: 70
Author(s): Sandra Romero-Córdoba, Sergio Rodríguez‐Cuevas, Verónica Bautista-Piña, Antonio Maffuz‐Aziz, Elvira D’Ippolito, Giulia Cosentino, Sara Baroni, Marilena V. Iorio, Alfredo Hidalgo-Miranda
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-018-33897-8

Population genomics of parallel evolution in gene expression and gene sequence during ecological adaptation
Cited by: 13
Author(s): Mercedes Rivas, María Saura, Andrés Pérez‐Figueroa, Marina Panova, Tomas Johansson, Carl André, Armando Caballero, Emilio Rolán‐Alvarez, Kerstin Johannesson, Humberto Quesada
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-018-34292-z

Comprehensive Analysis of Gene Expression Profiles and DNA Methylome reveals Oas1, Ppie, Polr2g as Pathogenic Target Genes of Gestational Diabetes Mellitus
Cited by: 9
Author(s): Yan Zhang, Tiancheng Zhang, Yunyan Chen
Software Mentions: 3
Published: about 6 years ago

10.3390/life10090191

The Effect of Tobacco Smoking and Smoking Cessation on Urinal miRNAs in a Pilot Study
Cited by: 2
Author(s): Zdenka Navratilova, Stanislav Losse, Pavla Petrová, Kateřina Sikorová, Alzbeta Chabronova, Martin Petřek
Software Mentions: 3
Published: about 4 years ago

10.1186/s40170-021-00247-8

Mutant IDH and non-mutant chondrosarcomas display distinct cellular metabolomes
Cited by: 10
Author(s): Sinthu Pathmanapan, Olga Ilkayeva, John T. Martin, Adrian Kwan Ho Loe, Hongyuan Zhang, Guofang Zhang, Christopher B. Newgard, Jay S. Wunder, Benjamin A. Alman
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-63798-8

Differential Effects of the Hormonal and Copper Intrauterine Device on the Endometrial Transcriptome
Cited by: 11
Author(s): Karen Smith‐McCune, Reuben Thomas, Sarah Averbach, Dominika Seidman, Margaret Takeda, Sahar Houshdaran, Linda C. Giudice
Software Mentions: 3
Published: over 4 years ago

10.1038/s41408-019-0249-x

Maternal embryonic leucine zipper kinase is a novel target for diffuse large B cell lymphoma and mantle cell lymphoma
Cited by: 7
Author(s): Anke Maes, Ken Maes, Philip Vlummens, Hendrik De Raeve, Julie Devin, Vanessa Szablewski, Kim De Veirman, Eline Menu, Jérôme Moreaux, Karin Vanderkerken, Elke De Bruyne
Software Mentions: 3
Published: almost 5 years ago

10.1084/jem.20161382

Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity
Cited by: 45
Author(s): David Thomas, Simon Clare, John M. Sowerby, Mercedes Pardo, Jatinder K. Juss, David Goulding, Louise van der Weyden, Daniel M. L. Storisteanu, Ananth Prakash, Marion Espéli, Shaun Flint, James C. Lee, Kim Hoenderdos, Leanne Kane, Katherine Harcourt, Subhankar Mukhopadhyay, Yagnesh Umrania, Robin Antrobus, James A. Nathan, David J. Adams, Alex Bateman, Jyoti S. Choudhary, Paul Lyons, Alison M. Condliffe, Edwin R. Chilvers, Gordon Dougan, Kenneth G. C. Smith
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms22094560

BMP Signaling Interferes with Optic Chiasm Formation and Retinal Ganglion Cell Pathfinding in Zebrafish
Cited by: 3
Author(s): Max D. Knickmeyer, Juan L. Mateo, Stephan Heermann
Software Mentions: 3
Published: over 3 years ago

10.1155/2018/2863068

“Positive Regulation of RNA Metabolic Process” Ontology Group Highly Regulated in Porcine Oocytes Matured In Vitro: A Microarray Approach
Cited by: 11
Author(s): Piotr Celichowski, Mariusz J. Nawrocki, Marta Dyszkiewicz-Konwińska, Maurycy Jankowski, Joanna Budna, Artur Bryja, Wiesława Kranc, Sylwia Borys, Sandra Knap, Sylwia Ciesiółka, Michal Ješeta, Karolina Piasecka-Stryczyńska, Ronza Khozmi, Dorota Bukowska, Paweł Antosik, Klaus‐Peter Brüssow, M Bruska, Michał Nowicki, Maciej Zabel, Bartosz Kempisty
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41388-019-0813-7

Addiction to DUSP1 protects JAK2V617F-driven polycythemia vera progenitors against inflammatory stress and DNA damage, allowing chronic proliferation
Cited by: 30
Author(s): Jan Stetka, Pavla Vyhlidalova, Lucie Lanikova, Pavla Kořalková, Ján Gurský, Antonín Hluší, Patrik Flodr, Soňa Hubáčková, Jiří Bártek, Zdeněk Hodný, Vladimír Divoký
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-021-08358-7

Identification of novel hub genes associated with gastric cancer using integrated bioinformatics analysis
Cited by: 17
Author(s): Xin Lu, Jiaqian Zhang, Sheng‐Xiao Zhang, Jun Qiao, Mengting Qiu, Xiangrong Liu, Xiaoxia Chen, Chong Gao, Huan-Hu Zhang
Software Mentions: 3
Published: over 3 years ago

10.3390/cancers12051108

The Hippo Pathway Transducers YAP1/TEAD Induce Acquired Resistance to Trastuzumab in HER2-Positive Breast Cancer
Cited by: 11
Author(s): Paula Gónzález-Alonso, Sandra Zazo, Ester Martı́n-Aparicio, Melani Luque, Cristina Chamizo, Marta Sanz-Álvarez, Pablo Mínguez, Gonzalo Goméz-López, Ion Cristóbal, Cristina Caramés, Jesús Garcı́a-Foncillas, Pîlar Eroles, Ana Lluch, Oriol Arpí, Ana Rovira, Joan Albanell, Sander R. Piersma, Connie R. Jiménez, Juan Madoz‐Gúrpide, Federico Rojo
Software Mentions: 3
Published: over 4 years ago

10.3390/cancers11071006

Inhibition of DNA Repair Mechanisms and Induction of Apoptosis in Triple Negative Breast Cancer Cells Expressing the Human Herpesvirus 6 U94
Cited by: 12
Author(s): Francesca Caccuri, Michele Sommariva, Stefania Marsico, Francesca Giordano, Alberto Zani, Arianna Giacomini, Cornel Fraefel, Andrea Balsari, Arnaldo Caruso
Software Mentions: 3
Published: over 5 years ago

10.3390/cells9081822

Repeated Application of Autologous Bone Marrow-Derived Lineage-Negative Stem/Progenitor Cells—Focus on Immunological Pathways in Patients with ALS
Cited by: 7
Author(s): Bartłomiej Baumert, Anna Sobuś, Monika Gołąb-Janowska, Edyta Paczkowska, Karolina Łuczkowska, Dorota Rogińska, Alicja Zawiślak, Sławomir Milczarek, Bogumiła Osękowska, Wioletta Pawlukowska, Agnieszka Meller, Karolina Machowska-Sempruch, Agnieszka Wełnicka, Krzysztof Safranow, Bogusław Machaliński
Software Mentions: 3
Published: over 4 years ago

10.3390/cancers12102743

Protein Translation Inhibition is Involved in the Activity of the Pan-PIM Kinase Inhibitor PIM447 in Combination with Pomalidomide-Dexamethasone in Multiple Myeloma
Cited by: 8
Author(s): Teresa Paíno, Lorena González-Méndez, Laura San-Segundo, Luis A. Corchete, Susana Hernández-García, Andrea Díaz-Tejedor, Esperanza M. Algarín, Pedro Mogollón, Montserrat Martín-Sánchez, Norma C. Gutiérrez, María Victoria Mateos, Mercedes Garayoa, Enrique M. Ocio
Software Mentions: 3
Published: about 4 years ago

10.1186/s40659-016-0085-4

Candidate genes and pathogenesis investigation for sepsis-related acute respiratory distress syndrome based on gene expression profile
Cited by: 16
Author(s): Min Wang, Jingjun Yan, Xingxing He, Qiang Zhong, Zhan Chen, Shusheng Li
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0063419

HMGA1: A Master Regulator of Tumor Progression in Triple-Negative Breast Cancer Cells
Cited by: 102
Author(s): Sandeep N. Shah, Leslie Cope, Weijie Poh, Amy Belton, Suheeta Roy, C. Conover Talbot, Saraswati Sukumar, David L. Huso, Linda M.S. Resar
Software Mentions: 3
Published: over 11 years ago

10.1242/dev.146910

In the fetal thymus, Gli3 in thymic epithelial cells promotes thymocyte positive selection and differentiation by repression ofShh
Cited by: 17
Author(s): Anisha Solanki, Diana C. Yánez, Scott R. Ross, Ching‐In Lau, Eleftheria Papaioannou, Jiawei Li, José Ignacio Saldaña, Tessa Crompton
Software Mentions: 3
Published: almost 7 years ago

10.1016/j.ebiom.2017.07.016

Type I IFN and not TNF, is Essential for Cyclic Di-nucleotide-elicited CTL by a Cytosolic Cross-presentation Pathway
Cited by: 20
Author(s): Darío Lirussi, Thomas Ebensen, Kai Schulze, Stephanie Trittel, Verónica Durán, Ines Liebich, Ulrich Kalinke, Carlos A. Guzmán
Software Mentions: 3
Published: over 7 years ago

10.1186/1752-0509-4-67

An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer
Cited by: 56
Author(s): Raj Chari, Bradley P. Coe, Emily A. Vucic, William W. Lockwood, Wan L. Lam
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0140022

The Effect of Statins on Blood Gene Expression in COPD
Cited by: 15
Author(s): Ma’en Obeidat, Nick Fishbane, Yunlong Nie, Virginia Chen, Zsuzsanna Hollander, Scott J. Tebbutt, Yohan Bossé, Raymond T. Ng, Bruce E. Miller, Bruce M. McManus, Stephen I. Rennard, Peter D. Paré, Don D. Sin
Software Mentions: 3
Published: about 9 years ago

10.1186/s12868-015-0186-y

mRNA and microRNA analysis reveals modulation of biochemical pathways related to addiction in the ventral tegmental area of methamphetamine self-administering rats
Cited by: 38
Author(s): Peter Bösch, Miles C. Benton, Donia Macartney-Coxson, Bronwyn M. Kivell
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0116686

Altered Gene Expression in Schizophrenia: Findings from Transcriptional Signatures in Fibroblasts and Blood
Cited by: 57
Author(s): Nadia Cattane, Alessandra Minelli, Elena Milanesi, Carlo Maj, Stefano Bignotti, Marco Bortolomasi, Luisella Bocchio-Chiavetto, Massimo Gennarelli
Software Mentions: 3
Published: almost 10 years ago

10.3389/fgene.2021.597635

A Novel Analysis Method for Evaluating the Interplay of Oxygen and Ionizing Radiation at the Gene Level
Cited by: 4
Author(s): Jeannette Jansen, Patricia Vieten, Francesca Pagliari, Rachel Hanley, Maria Grazia Marafioti, Luca Tirinato, Joao Seco
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0171828

PBMC transcriptome profiles identifies potential candidate genes and functional networks controlling the innate and the adaptive immune response to PRRSV vaccine in Pietrain pig
Cited by: 17
Author(s): M. S. Islam, Christine Große‐Brinkhaus, Maren Pröll, Muhammad Jasim Uddin, Sharmin Aqter Rony, Dawit Tesfaye, Ernst Tholen, M. Hoelker, K. Schellander, Christiane Neuhoff
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms16023493

Transcriptome Profiling and Identification of Transcription Factors in Ramie (Boehmeria nivea L. Gaud) in Response to PEG Treatment, Using Illumina Paired-End Sequencing Technology
Cited by: 38
Author(s): Xiaopeng An, Jie Chen, Jingyu Zhang, Yu-Cai Liao, Lunjin Dai, Bo Wang, Lijun Liu, Dingxiang Peng
Software Mentions: 3
Published: almost 10 years ago

10.3390/ijms20010084

The Unique Mechanisms of Cellular Proliferation, Migration and Apoptosis are Regulated through Oocyte Maturational Development—A Complete Transcriptomic and Histochemical Study
Cited by: 20
Author(s): Błażej Chermuła, Maciej Brązert, Michal Ješeta, Katarzyna Ożegowska, Patrycja Sujka‐Kordowska, Aneta Konwerska, Artur Bryja, Wiesława Kranc, Maurycy Jankowski, Mariusz J. Nawrocki, Ievgeniia Kocherova, Piotr Celichowski, Blanka Borowiec, Małgorzata Popis, Joanna Budna‐Tukan, Paweł Antosik, Dorota Bukowska, Klaus‐Peter Brüssow, Leszek Pawełczyk, M Bruska, Maciej Zabel, Michał Nowicki, Bartosz Kempisty
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1004368

Translational Regulation of Specific mRNAs Controls Feedback Inhibition and Survival during Macrophage Activation
Cited by: 95
Author(s): Johanna Schott, Sonja Reitter, Janine Philipp, Katharina Haneke, Heiner Schäfer, Georg Stoecklin
Software Mentions: 3
Published: over 10 years ago

10.3389/fonc.2018.00615

Development and Validation of a 9-Gene Prognostic Signature in Patients With Multiple Myeloma
Cited by: 16
Author(s): Xiaoping Li, Xiaohong Yin, Xiangyu Meng, Xue Yan, Fan Wang, Li He
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1004735

Genome-Wide Associations between Genetic and Epigenetic Variation Influence mRNA Expression and Insulin Secretion in Human Pancreatic Islets
Cited by: 139
Author(s): Anna Olsson, Petr Volkov, Karl Bacos, Tasnim Dayeh, Elin Hall, Erika Nilsson, Claes Ladenvall, Tina Rönn, Charlotte Ling
Software Mentions: 3
Published: about 10 years ago

10.3390/ijms20071581

Unique Gene Expression Signatures in the Intestinal Mucosa and Organoids Derived from Germ-Free and Monoassociated Mice
Cited by: 9
Author(s): Lucie Janečková, Klara Kostovcikova, Jiří Švec, Monika Šťastná, Hynek Strnad, Michal Kolář, Tomáš Hudcovic, Jitka Stančíková, Jolana Turečková, Nikol Baloghová, Eva Šloncová, Kateřina Galušková, Helena Tlaskalová‐Hogenová, Vladimír Kořínek
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2020.00542

Critical Roles of ELVOL4 and IL-33 in the Progression of Obesity-Related Cardiomyopathy via Integrated Bioinformatics Analysis
Cited by: 6
Author(s): Jun Tao, Yajing Wang, Ling Li, Junmeng Zheng, Shi Liang
Software Mentions: 3
Published: over 4 years ago

10.3389/fpls.2016.01403

Transcriptome Analysis of Stem and Globally Comparison with Other Tissues in Brassica napus
Cited by: 13
Author(s): Liyun Miao, Libin Zhang, Nadia Raboanatahiry, Guangyuan Lu, Xuekun Zhang, Jun Xiang, Jianping Gan, Chunhua Fu, Maoteng Li
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2015.01058

Identification of Putative Candidate Genes for Water Stress Tolerance in Canola (Brassica napus)
Cited by: 64
Author(s): Jing Zhang, Annaliese S. Mason, Jian Wu, Sheng Liu, Xuechen Zhang, Tao Luo, R. J. Redden, Jacqueline Batley, Liyong Hu, Guijun Yan
Software Mentions: 3
Published: almost 9 years ago

10.3390/genes9050240

Whole Exome Sequencing Identifies New Host Genomic Susceptibility Factors in Empyema Caused by Streptococcus pneumoniae in Children: A Pilot Study
Cited by: 8
Author(s): Antonio Salas, Jacobo Pardo‐Seco, Ruth Barral-Arca, Miriam Cebey-López, Alberto Gómez‐Carballa, Irene Rivero‐Calle, Sara Pischedda, María José Currás-Tuala, Jorge Amigo, José Gómez-Rial, Federico Martinón‐Torres
Software Mentions: 3
Published: over 6 years ago

10.3390/genes11040396

Domesticated gag Gene of Drosophila LTR Retrotransposons Is Involved in Response to Oxidative Stress
Cited by: 6
Author(s): Pavel A. Makhnovskii, Yevheniia Balakireva, Л. Н. Нефедова, А. Р. Лавренов, I. V. Kuzmin, Alexander Kim
Software Mentions: 3
Published: over 4 years ago

10.1186/s12864-017-3488-x

Conserved gene expression in sperm reservoirs between birds and mammals in response to mating
Cited by: 23
Author(s): Mohammad Atikuzzaman, Manuel Álvarez‐Rodríguez, Alejandro Vicente-Carrillo, Martin Johnsson, Dominic Wright, Heriberto Rodríguez-Martinez
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13007-019-0420-1

Selection and validation of reference genes for quantitative expression analysis of miRNAs and mRNAs in Poplar
Cited by: 34
Author(s): Fang Tang, Liwei Chu, Wenbo Shu, Xuejiao He, Lijuan Wang, Mengzhu Lu
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2164-15-919

Transcriptome profiling using pyrosequencing shows genes associated with bast fiber development in ramie (Boehmeria nivea L.)
Cited by: 40
Author(s): Jie Chen, Zhihua Pei, Lunjin Dai, Bo Wang, Lijun Liu, Xiaopeng An, Dingxiang Peng
Software Mentions: 3
Published: about 10 years ago

10.3390/jpm11020111

Clinical Utility of microRNAs in Exhaled Breath Condensate as Biomarkers for Lung Cancer
Cited by: 12
Author(s): C. Pérez-Sánchez, Nuria Barbarroja, Lucas Carminatti Pantaleão, Laura M. López‐Sánchez, Susan E. Ozanne, Bernabé Jurado-Gámez, Enrique Aranda, Chary López‐Pedrera, Antonio Rodríguez‐Ariza
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-014-0522-z

Sex differences in the genome-wide DNA methylation pattern and impact on gene expression, microRNA levels and insulin secretion in human pancreatic islets
Cited by: 186
Author(s): Elin Hall, Petr Volkov, Tasnim Dayeh, Jonathan L.S. Esguerra, Sofia Salö, Lena Eliasson, Tina Rönn, Karl Bacos, Charlotte Ling
Software Mentions: 3
Published: almost 10 years ago

10.1172/jci.insight.150483

TNFRSF13B genotypes control immune-mediated pathology by regulating the functions of innate B cells
Cited by: 3
Author(s): Mayara Garcia de Mattos Barbosa, Adam R. Lefferts, Danny Huynh, Hui Liu, Yu Zhang, Beverly Fu, Jenna Barnes, Milagros Samaniego‐Picota, Richard J. Bram, Raif S. Geha, Ariella Shikanov, Eline T. Luning Prak, Evan A. Farkash, Jeffrey L. Platt, Marília Cascalho
Software Mentions: 3
Published: about 3 years ago

10.1186/1471-2164-10-467

An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.)
Cited by: 59
Author(s): Albert Mascarell-Creus, Joaquı́n Cañizares, Josep Vilarrasa-Blasi, Santiago Mora-Garcı́a, José Blanca, Daniel González-Ibeas, Montserrat Saladié, Cristina Roig, Wim Deleu, Belén Picó-Silvent, Núria López‐Bigas, Miguel A. Aranda, Jordi García-Más, F. Nuez, Pere Puigdomènech, Ana I. Caño‐Delgado
Software Mentions: 3
Published: about 15 years ago

10.1371/journal.pgen.1003046

Identification of Novel Type 2 Diabetes Candidate Genes Involved in the Crosstalk between the Mitochondrial and the Insulin Signaling Systems
Cited by: 23
Author(s): Josep M. Mercader, Montserrat Puiggròs, Ayellet V. Segrè, Evarist Planet, Eleonora Sorianello, David Sebastián, Sergio Rodríguez‐Cuenca, Vicent Ribas, Sílvia Bonàs-Guarch, Sorin Drăghici, Chenjing Yang, Sílvia Mora, António Vidal-Puig, Josée Dupuis, José C. Florez, António Zorzano, David Torrents
Software Mentions: 2
Published: almost 12 years ago

10.1186/1471-2105-13-234

Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling)
Cited by: 0
Author(s): Kristof De Beuf, Peter Pipelers, Megan Andriankaja, Olivier Thas, Dirk Inzé, Ciprian M. Crainiceanu, Lieven Clement
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pgen.1006687

Reduced dosage of β-catenin provides significant rescue of cardiac outflow tract anomalies in a Tbx1 conditional null mouse model of 22q11.2 deletion syndrome
Cited by: 25
Author(s): Silvia E. Racedo, Erica Hasten, Mingyan Lin, Gnanapackiam Sheela Devakanmalai, Tingwei Guo, Ertuğrul M. Özbudak, Chen Cai, Deyou Zheng, Bernice E. Morrow
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0185801

A small molecule drug promoting miRNA processing induces alternative splicing of MdmX transcript and rescues p53 activity in human cancer cells overexpressing MdmX protein
Cited by: 14
Author(s): Georgios Valianatos, Barbora Valčíková, Kateřina Growková, Amandine Verlande, Jitka Mlčochová, Lenka Radová, Monika Štětková, Michaela Vyhnakova, Ondřej Slabý, Stjepan Uldrijan
Software Mentions: 2
Published: about 7 years ago

10.3389/fphar.2021.739644

Interventional Efects of the Topical of “Sanse Powder” Essential Oils Nanoemulsion on Knee Osteoarthritis in Rats by Targeting the ERS/TXNIP/NLRP3 Signaling Axis
Cited by: 7
Author(s): Zixiu Liu, Taiyang Liao, Nan Yang, Liang Ding, Xiaochen Li, Peng Wu, Peimin Wang
Software Mentions: 2
Published: about 3 years ago

10.1186/1471-213X-8-14

Aberrant epigenetic changes and gene expression in cloned cattle dying around birth
Cited by: 26
Author(s): Li Lin, Qiang Li, Lei Zhang, Di Zhao, Yong Dai, Ning Li
Software Mentions: 2
Published: over 16 years ago

10.1007/s10856-021-06565-z

Quercetin modified electrospun PHBV fibrous scaffold enhances cartilage regeneration
Cited by: 7
Author(s): Wei Chen, Yongsheng Li, Yuting Huang, Yao Dai, Tingfei Xi, Zheng Zhou, Hairong Liu
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms20194894

A Novel Panel of 80 RNA Biomarkers with Differential Expression in Multiple Human Solid Tumors against Healthy Blood Samples
Cited by: 2
Author(s): Lucas Delmonico, John C. Obenauer, Fatir Qureshi, Gilda Alves, Maurício Augusto Silva Magalhães Costa, Katherine J. Martin, Marcia V. Fournier
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0046601

Comparative Analysis of the Shadoo Gene between Cattle and Buffalo Reveals Significant Differences
Cited by: 12
Author(s): Hui Zhao, Linlin Liu, Shouhui Du, Siqi Wang, Yaping Zhang
Software Mentions: 2
Published: about 12 years ago

10.15252/emmm.201506172

Blocking sense‐strand activity improves potency, safety and specificity of anti‐hepatitis B virus short hairpin <scp>RNA</scp>
Cited by: 21
Author(s): Thomas Michler, Stefanie Große, Stefan Mockenhaupt, Natalie Röder, Ferdinand Stückler, Bettina L. Knapp, Chunkyu Ko, Mathias Heikenwälder, Ulrike Protzer, Dirk Grimm
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2014.00531

Light-dependent expression of flg22-induced defense genes in Arabidopsis
Cited by: 33
Author(s): С. Сано, Mayu Aoyama, Kana Nakai, Koji Shimotani, Kouji Yamasaki, Masa H. Sato, Daisuke Tojo, I Nengah Suwastika, Hironari Nomura, Takashi Shiina
Software Mentions: 2
Published: about 10 years ago

10.1007/s00403-018-1813-0

Association between LCE gene polymorphisms and psoriasis vulgaris among Mongolians from Inner Mongolia
Cited by: 5
Author(s): Li Sun, Yuting Cao, Nagonbilig He, Jianwen Han, Rong Hai, Sarnai Arlud, Baoyindeligeer He, Wurina Wu, Lizhong Li, Xiulan Su, Hongwei Cui, Zhao Wenchao, Buheqiqige Chao, Dandan Liu, Zhiqiang Sun, Yanping Huang
Software Mentions: 2
Published: almost 7 years ago

10.3390/plants9050567

RgC3H Involves in the Biosynthesis of Allelopathic Phenolic Acids and Alters Their Release Amount in Rehmannia glutinosa Roots
Cited by: 12
Author(s): Yan Yang, Zhongyi Zhang, Ruifang Li, Yanjie Yi, Chaojie Wang, Zushiqi Wang, Yunyi Liu
Software Mentions: 2
Published: over 4 years ago

10.1155/2018/4789035

Comment on “Analysis of Microarray-Identified Genes and MicroRNAs Associated with Idiopathic Pulmonary Fibrosis”
Cited by: 1
Author(s): Chenyu Li, Shujuan Wang, Lin Che, Xianghua Wang, Yan Xu
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0163013

Genome-Wide Analysis Identifies IL-18 and FUCA2 as Novel Genes Associated with Diastolic Function in African Americans with Sickle Cell Disease
Cited by: 10
Author(s): Julio D. Duarte, Ankit A. Desai, Justin R. Sysol, Taimur Abbasi, Amit R. Patel, Roberto M. Lang, Akash Gupta, Joe G.N. Garcia, Victor R. Gordeuk, Roberto F. Machado
Software Mentions: 2
Published: about 8 years ago

10.3389/fimmu.2017.00123

FHL2 Regulates Natural Killer Cell Development and Activation during Streptococcus pneumoniae Infection
Cited by: 16
Author(s): Thomas Baranek, Eric Morello, Alexandre Valayer, Rose-France Aimar, Déborah Bréa, Clémence Henry, Anne‐Gaëlle Besnard, Emilie Dalloneau, Antoine Guillon, Pierre‐François Dequin, Émilie Narni-Mancinelli, Éric Vivier, Fabrice Laurent, Wei Yu, Christophe Paget, Mustapha Si‐Tahar
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0197092

Transcriptomic analysis of neuregulin-1 regulated genes following ischemic stroke by computational identification of promoter binding sites: A role for the ETS-1 transcription factor
Cited by: 11
Author(s): Monique C Surles-Zeigler, Yonggang Li, Timothy J. Distel, Hakeem Omotayo, Shaokui Ge, Byron D. Ford
Software Mentions: 2
Published: over 6 years ago

10.1186/1751-0147-48-7

Campylobacter spp., Enterococcus spp., Escherichia coli, Salmonella spp., Yersinia spp., and Cryptosporidium oocysts in semi-domesticated reindeer (Rangifer tarandus tarandus) in Northern Finland and Norway
Cited by: 38
Author(s): Nicole Kemper, A. Aschfalk, Christiane Höller
Software Mentions: 2
Published: over 18 years ago

10.2174/1745017901814010053

Design of FRET Probes for SNP RS1006737, Related to Mood Disorder
Cited by: 5
Author(s): Germano Orrù, Mauro Giovanni Carta, Alessia Bramanti
Software Mentions: 2
Published: over 6 years ago

10.3390/biom11030378

Mesenchymal–Epithelial Transition in Fibroblasts of Human Normal Lungs and Interstitial Lung Diseases
Cited by: 9
Author(s): Carina Becerril, Martha Montaño, José Cisneros, Criselda Mendoza-Milla, Annie Pardo, Blanca Ortíz-Quintero, Moisés Selman, Carlos Ramos
Software Mentions: 2
Published: over 3 years ago

10.7150/thno.36120

Copper-incorporated bioactive glass-ceramics inducing anti-inflammatory phenotype and regeneration of cartilage/bone interface
Cited by: 93
Author(s): Rongcai Lin, Chengbin Deng, Xuxiang Li, Yaqin Liu, Meng Zhang, Qin Chen, Qingqiang Yao, Liming Wang, Chengtie Wu
Software Mentions: 2
Published: almost 6 years ago

10.1186/1423-0127-20-13

Pentoxifylline and the proteasome inhibitor MG132 induce apoptosis in human leukemia U937 cells through a decrease in the expression of Bcl-2 and Bcl-XL and phosphorylation of p65
Cited by: 25
Author(s): Alejandro Bravo-Cuéllar, Georgina Hernández‐Flores, José Manuel Lerma-Díaz, Jorge Ramiro Domínguez-Rodríguez, Luis Felipe Jave‐Suárez, Ruth de Celis-Carrillo, Adriana Aguilar‐Lemarroy, Paulina Gómez-Lomelí, Pablo César Ortiz‐Lazareno
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0044405

Evaluation of New Reference Genes in Papaya for Accurate Transcript Normalization under Different Experimental Conditions
Cited by: 150
Author(s): Xiaoyang Zhu, Xueping Li, Weixin Chen, Jianye Chen, Wang-jin Lu, Lei Chen, Danwen Fu
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.ppat.1005528

The Typhoid Toxin Promotes Host Survival and the Establishment of a Persistent Asymptomatic Infection
Cited by: 56
Author(s): Lisa Del Bel Belluz, Riccardo Guidi, Ioannis S. Pateras, Laura Levi, Boris Mihaljević, Syed Fazle Rouf, Marie Wrande, Marco Candela, Silvia Turroni, Claudia Nastasi, Clarissa Consolandi, Clelia Peano, Toma Tebaldi, Gabriella Viero, Vassilis G. Gorgoulis, Thorbjørn Krejsgaard, Mikael Rhen, Teresa Frisan
Software Mentions: 2
Published: over 8 years ago

10.1111/pbi.13335

Metabolite‐based genome‐wide association study enables dissection of the flavonoid decoration pathway of wheat kernels
Cited by: 81
Author(s): Jie Chen, Xin Hu, Taotao Shi, Huanran Yin, Dongfa Sun, Yuanfeng Hao, Xianchun Xia, Jie Luo, Alisdair R. Fernie, Zhonghu He, Wei Chen
Software Mentions: 2
Published: over 4 years ago

10.1007/s10930-012-9431-8

Highly Upregulated Expression of CD36 and MSR1 in Circulating Monocytes of Patients with Acute Coronary Syndromes
Cited by: 37
Author(s): Michał Piechota, Anna Banaszewska, Joanna Dudziak, Marek Słomczyński, Robert Plewa
Software Mentions: 2
Published: over 12 years ago

10.1155/2018/1096079

Isolation of a Reassortant H1N2 Swine Flu Strain of Type “Swine-Human-Avian” and Its Genetic Variability Analysis
Cited by: 4
Author(s): Longbai Wang, Qiu-Yong Chen, Xuemin Wu, Che YongLiang, Chengyan Wang, Ru-Jing Chen, Zhou Lun-jiang
Software Mentions: 2
Published: over 6 years ago

10.1038/srep10438

A cross comparison of technologies for the detection of microRNAs in clinical FFPE samples of hepatoblastoma patients
Cited by: 48
Author(s): Aniruddha Chatterjee, Anna L. Leichter, Vicky Fan, Peter Tsai, Rachel Purcell, Michael J. Sullivan, Michael R. Eccles
Software Mentions: 2
Published: over 9 years ago

10.22074/ijfs.2020.6077

Effect of Vitamin D3 on Mitochondrial Biogenesis in Granulosa Cells Derived from Polycystic Ovary Syndrome.
Cited by: 8
Author(s): Zahra Safaei, Shabnam Bakhshalizadeh, Mohammad Hossein Nasr Esfahani, Azadeh Akbari Sene, Vahid Najafzadeh, Mansoureh Soleimani, Reza Shirazi
Software Mentions: 2
Published: over 4 years ago

10.1186/s12985-021-01619-8

Lineage analysis of human papillomavirus type 39 in cervical samples of Iranian women
Cited by: 1
Author(s): Neda Hosseini, Zabihollah Shoja, Arash Arashkia, Amir-Hossein Khodadadi, Somayeh Jalilvand
Software Mentions: 2
Published: over 3 years ago

10.1038/srep40881

HO-1 inhibits preadipocyte proliferation and differentiation at the onset of obesity via ROS dependent activation of Akt2
Cited by: 33
Author(s): Gabriel Wagner, Josefine Lindroos-Christensen, Elisa Einwallner, Julia Husa, Thea-Christin Zapf, Katharina Lipp, Sabine Rauscher, Marion Gröger, Andreas Spittler, Robert Loewe, Флориан Грубер, J. Catharina Duvigneau, Thomas Mohr, Hedwig Sutterlüty, Florian Klinglmüller, Gerhard Prager, Berthold Huppertz, Jeanho Yun, Oswald Wagner, Harald Esterbauer, Martin Bilban
Software Mentions: 2
Published: almost 8 years ago

10.3389/fimmu.2018.00249

Whole-Genome Expression Profiling in Skin Reveals SYK As a Key Regulator of Inflammation in Experimental Epidermolysis Bullosa Acquisita
Cited by: 23
Author(s): Unni Samavedam, Nina Mitschker, Anika Kasprick, Katja Bieber, Enno Schmidt, Tamás Laskay, Andreas Recke, Stephanie Goletz, Gestur Vidarsson, Franziska Schulze, Mikko Armbrust, Katharina Schulze Dieckhoff, Hendrikus Pas, Marcel F. Jonkman, Kathrin Kalies, Detlef Zillikens, Yask Gupta, Saleh M. Ibrahim, Ralf J. Ludwig
Software Mentions: 2
Published: over 6 years ago

10.3892/ijo.2012.1621

Differential gene expression pattern in early gastric cancer by an integrative systematic approach
Cited by: 16
Author(s): Seungyoon Nam, Jieun Lee, Sung‐Ho Goh, Seung-Hyun Hong, Naaleum Song, Sang-Geun Jang, Il Ju Choi, Yeon-Su Lee
Software Mentions: 2
Published: about 12 years ago

Projects: pypi: oligo

Papers Mentioning oligo 204