Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: ngsutils

https://packages.ecosyste.ms/registries/pypi.org/packages/ngsutils

NGSUtils - Various utilities for working with NGS data
7 versions
Latest release: over 8 years ago
16 downloads last month

Papers Mentioning ngsutils 8

Trem2 Y38C mutation and loss of Trem2 impairs neuronal synapses in adult mice
Cited by: 24
Author(s): Vaishnavi Jadhav, Peter B. C. Lin, Taylor Pennington, Gonzalo Viana Di Prisco, Asha Jacob Jannu, Guixiang Xu, Miguel Moutinho, Jie Zhang, Brady K. Atwood, Shweta S. Puntambekar, Stephanie J. Bissel, Adrian L. Oblak, Gary E. Landreth, Bruce T. Lamb
Software Mentions: 3
Published: about 4 years ago

10.1186/s12974-020-01900-7

A1 reactive astrocytes and a loss of TREM2 are associated with an early stage of pathology in a mouse model of cerebral amyloid angiopathy
Cited by: 30
Author(s): Xavier Taylor, Pablo Cisternas, Yanwen You, Yingjian You, Shunian Xiang, Yamil Marambio, Jie Zhang, Rubén Vidal, Cristian A. Lasagna‐Reeves
Software Mentions: 3
Published: over 4 years ago

10.3390/cancers10110403

Simultaneous Inhibition of MEK and Hh Signaling Reduces Pancreatic Cancer Metastasis
Cited by: 13
Author(s): Dongsheng Gu, Hai Lin, Xiaoli Zhang, Qipeng Fan, Shaoxiong Chen, Safi Shahda, Yunlong Liu, Jie Sun, Jingwu Xie
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1008953

YebC regulates variable surface antigen VlsE expression and is required for host immune evasion in Borrelia burgdorferi
Cited by: 6
Author(s): Yan Zhang, Tong Chen, Sajith Raghunandanan, Xuwu Xiang, Jing Yang, Qiang Liu, Diane G. Edmondson, Steven J. Norris, Xiuli Yang, Yongliang Lou
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.ppat.1009198

Metabolic reprogramming of the myeloid lineage by Schistosoma mansoni infection persists independently of antigen exposure
Cited by: 11
Author(s): Diana Cortés-Selva, Lisa Gibbs, J. Alan Maschek, Márcia Nascimento, Tyler Van Ry, James E. Cox, Eyal Amiel, Keke C. Fairfax
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12920-019-0550-3

Transcriptome profiling reveals significant changes in the gastric muscularis externa with obesity that partially overlap those that occur with idiopathic gastroparesis
Cited by: 10
Author(s): B. Paul Herring, Meng Chen, Plamen Mihaylov, April M. Hoggatt, Anita Gupta, Attila Nakeeb, Jennifer Choi, John M. Wo
Software Mentions: 2
Published: over 5 years ago

10.3390/brainsci9120340

Evaluation of Microglia/Macrophage Cells from Rat Striatum and Prefrontal Cortex Reveals Differential Expression of Inflammatory-Related mRNA after Methamphetamine
Cited by: 9
Author(s): Joanne Kays, Bryan K. Yamamoto
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13059-015-0580-x

Quantification of cell identity from single-cell gene expression profiles
Cited by: 132
Author(s): Idan Efroni, Pui Leng Ip, Tal Nawy, Alison Mello, Kenneth D. Birnbaum
Software Mentions: 1
Published: almost 10 years ago