Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: newick

https://packages.ecosyste.ms/registries/pypi.org/packages/newick

A python module to read and write the Newick format
25 versions
Latest release: over 1 year ago
9 dependent packages
4,108 downloads last month

Papers Mentioning newick 6

Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?
Cited by: 62
Author(s): Irepan Salvador-Martínez, Marco Grillo, Michalis Averof, Maximilian J. Telford
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2105-7-439

TreeDyn: towards dynamic graphics and annotations for analyses of trees
Cited by: 908
Author(s): François Chevenet, Catherine Brun, Anne‐Laure Bañuls, Bernard Jacq, Richard Christen
Software Mentions: 3
Published: about 18 years ago

10.1186/s12859-018-2129-y

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
Cited by: 1,247
Author(s): Chao Zhang, Maryam Rabiee, Erfan Sayyari, Siavash Mirarab
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-018-0411-x

Metagenomic investigation of vestimentiferan tubeworm endosymbionts from Mid-Cayman Rise reveals new insights into metabolism and diversity
Cited by: 31
Author(s): Julie Réveillaud, R. Anderson, Sintra Reves-Sohn, Colleen M. Cavanaugh, J. A. Huber
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-021-07739-3

Uphyloplot2: visualizing phylogenetic trees from single-cell RNA-seq data
Cited by: 12
Author(s): Stefan Kurtenbach, Anthony Cruz, Daniel A. Rodriguez, Michael A. Durante, J. William Harbour
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1008623

The very early evolution of protein translocation across membranes
Cited by: 12
Author(s): AJ Harris, Aaron D. Goldman
Software Mentions: 1
Published: over 3 years ago