Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: needle

https://packages.ecosyste.ms/registries/pypi.org/packages/needle

Automated testing for your CSS.
13 versions
Latest release: about 1 year ago
3 dependent packages
7,015 downloads last month

Papers Mentioning needle 12

A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen
Cited by: 30
Author(s): David E. Cook, Holger Kramer, David E Torres, Michael Seidl, Bart P.H.J. Thomma
Software Mentions: 8
Published: almost 4 years ago

10.3390/biom10010026

Graph Theory-Based Sequence Descriptors as Remote Homology Predictors
Cited by: 12
Author(s): Guillermı́n Agüero-Chapin, Deborah Galpert Cañizares, Reinaldo Molina Ruiz, Evys Ancede-Gallardo, Gisselle Pérez-Machado, G Riva, Agostinho Antunes
Software Mentions: 8
Published: almost 5 years ago

10.1186/1471-2105-8-198

A novel approach to sequence validating protein expression clones with automated decision making
Cited by: 8
Author(s): Elena Taycher, Andreas Rolfs, Yanhui Hu, Dongmei Zuo, Stephanie E. Mohr, Janice Williamson, Joshua LaBaer
Software Mentions: 3
Published: over 17 years ago

10.7554/eLife.04940

Neurofibromin controls macropinocytosis and phagocytosis in Dictyostelium
Cited by: 101
Author(s): Gareth Bloomfield, David Traynor, Sophia P Sander, Douwe M. Veltman, Justin A. Pachebat, Robert R. Kay
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2105-14-S11-S4

libgapmis: extending short-read alignments
Cited by: 9
Author(s): Nikolaos Alachiotis, Simon Berger, Tomáš Flouri, Solon P. Pissis, Alexandros Stamatakis
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pcbi.1005120

Template-Based Modeling of Protein-RNA Interactions
Cited by: 29
Author(s): Jinfang Zheng, Petras J. Kundrotas, Ilya A. Vakser, Shiyong Liu
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0050450

Caspase-1 and IL-1β Processing in a Teleost Fish
Cited by: 73
Author(s): Mário Reis, Ana do Vale, Pedro José Barbosa Pereira, Jorge E. Azevedo, Nuno M.S. dos Santos
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0158704

Sequence-Specific Recognition of DNA by Proteins: Binding Motifs Discovered Using a Novel Statistical/Computational Analysis
Cited by: 10
Author(s): Dávid Jakubec, Roman A. Laskowski, Jiřı́ Vondrášek
Software Mentions: 1
Published: over 8 years ago

10.3389/fvets.2014.00022

A Comparison of the Chicken and Turkey Proteomes and Phosphoproteomes in the Development of Poultry-Specific Immuno-Metabolism Kinome Peptide Arrays
Cited by: 18
Author(s): Ryan J. Arsenault, Brett Trost, Michael H. Kogut
Software Mentions: 1
Published: almost 10 years ago

10.1186/s40064-016-3312-0

Bioinformatic curation and alignment of genotyped hepatitis B virus (HBV) sequence data from the GenBank public database
Cited by: 28
Author(s): Trevor Graham Bell, Mukhlid Yousif, Anna Kramvis
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-8-59

Sequence features responsible for intron retention in human
Cited by: 134
Author(s): Noboru Jo Sakabe, Sandro J. de Souza
Software Mentions: 1
Published: almost 18 years ago

10.1186/1741-7007-5-32

Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes
Cited by: 137
Author(s): Celine A. Hayden, Richard A. Jorgensen
Software Mentions: 1
Published: over 17 years ago