Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: memote

https://packages.ecosyste.ms/registries/pypi.org/packages/memote

the genome-scale metabolic model test suite
55 versions
Latest release: about 1 year ago
1 dependent package
758 downloads last month

Papers Mentioning memote 8

Current status and applications of genome-scale metabolic models
Cited by: 406
Author(s): Changdai Gu, Gi Bae Kim, Won Jun Kim, Hyun Uk Kim, Sang Yup Lee
Software Mentions: 7
Published: over 5 years ago

10.1093/bioinformatics/btz088

Gsmodutils: a python based framework for test-driven genome scale metabolic model development
Cited by: 2
Author(s): James P. Gilbert, Nicole Pearcy, Rupert Norman, Thomas Millat, Klaus Winzer, John R. King, Charlie Hodgman, Nigel P. Minton, Jamie Twycross
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pcbi.1006541

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
Cited by: 208
Author(s): Hao Wang, Simonas Marcišauskas, Benjamín J. Sánchez, Iván Domenzain, Daniel Hermansson, Rasmus Ågren, Jens Nielsen, Eduard J. Kerkhoven
Software Mentions: 3
Published: about 6 years ago

10.1128/mSystems.00516-19

Metabolic Analyses of Nitrogen Fixation in the Soybean Microsymbiont Sinorhizobium fredii Using Constraint-Based Modeling
Cited by: 17
Author(s): Carolina A. Contador, Siu-Kit Lo, Siu Hung Joshua Chan, Hon‐Ming Lam
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.isci.2020.101525

Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production
Cited by: 29
Author(s): Snorre Sulheim, Tjaša Kumelj, Dino van Dissel, Ali Salehzadeh‐Yazdi, Congcong Du, Gilles P. van Wezel, Kay Nieselt, Eivind Almaas, Alexander Wentzel, Eduard J. Kerkhoven
Software Mentions: 2
Published: about 4 years ago

10.3389/fcell.2021.642681

Analyzing Metabolic States of Adipogenic and Osteogenic Differentiation in Human Mesenchymal Stem Cells via Genome Scale Metabolic Model Reconstruction
Cited by: 4
Author(s): Þóra Björg Sigmarsdóttir, Sarah McGarrity, James T. Yurkovich, Óttar Rolfsson, Ólafur E. Sigurjónsson
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.00116

Reconstruction and Validation of a Genome-Scale Metabolic Model of Streptococcus oralis (iCJ415), a Human Commensal and Opportunistic Pathogen
Cited by: 9
Author(s): Christian Salgård Jensen, Charles J. Norsigian, Xin Fang, Xiaohui Chen Nielsen, Jens Jørgen Christensen, Bernhard Ø. Palsson, Jonathan M. Monk
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-019-3134-5

Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model
Cited by: 31
Author(s): Simonas Marcišauskas, Boyang Ji, Jens Nielsen
Software Mentions: 1
Published: about 5 years ago