pypi: matplotlib | Projects | Ecosyste.ms: Papers

10.1016/j.dib.2016.06.049

Data on the verification and validation of segmentation and registration methods for diffusion MRI
Cited by: 1
Author(s): Oscar Estéban, Dominique Zosso, Alessandro Daducci, M. Bach Cuadra, María J. Ledesma-Carbayo, Jean‐Philippe Thiran, A. Santos
Software Mentions: 4
Published: about 8 years ago

10.3390/pathogens10050555

Microeukaryotic Communities on the Fruit of Gardenia thunbergia Thunb. with a Focus on Pathogenic Fungi
Cited by: 0
Author(s): Bastian Steudel, Himansu Baijnath, Thorben Schwedt, Armin O. Schmitt
Software Mentions: 4
Published: over 3 years ago

10.1007/s00294-020-01096-6

Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality
Cited by: 11
Author(s): Anton Levitan, Andrew N. Gale, Emma Dallon, Darby W. Kozan, Kyle W. Cunningham, Roded Sharan, Judith Berman
Software Mentions: 4
Published: over 4 years ago

10.7150/jca.59933

Hallmark microRNA signature in liquid biopsy identifies hepatocellular carcinoma and differentiates it from liver metastasis
Cited by: 6
Author(s): Vernon G. Wong, Ming-In Wong, Chi-Tat Lam, Maria Li Lung, Ka-On Lam, Victor Lee
Software Mentions: 4
Published: almost 4 years ago

10.7554/eLife.44889

Identification of compounds that rescue otic and myelination defects in the zebrafish adgrg6 (gpr126) mutant
Cited by: 19
Author(s): Elvira Diamantopoulou, Sarah Baxendale, Antonio de la Vega de León, Anzar Asad, Celia J. Holdsworth, Leïla Abbas, Valerie J. Gillet, Giselle R. Wiggin, Tanya T. Whitfield
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22063125

A Transcriptomic Approach to Understanding the Combined Impacts of Supra-Optimal Temperatures and CO2 Revealed Different Responses in the Polyploid Coffea arabica and Its Diploid Progenitor C. canephora
Cited by: 12
Author(s): Isabel Marques, Isabel Fernandes, Octávio S. Paulo, Fernando C. Lidon, Fábio M. DaMatta, José C. Ramalho, Ana I. Ribeiro‐Barros
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2229-11-131

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)
Cited by: 101
Author(s): Grit Haseneyer, Thomas Schmutzer, Michael Seidel, Ruonan Zhou, Martin Mascher, C. C. Schön, Stefan Taudien, Uwe Scholz, Nils Stein, Klaus Mayer, Eva Bauer
Software Mentions: 4
Published: about 13 years ago

10.1128/mSystems.00731-19

Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries
Cited by: 113
Author(s): Matthew R. Olm, Alexander Crits-Christoph, Spencer Diamond, Adi Lavy, Paula B. Matheus Carnevali, Jillian F. Banfield
Software Mentions: 4
Published: almost 5 years ago

10.1038/s42003-020-1006-1

Multidimensional imaging of liver injury repair in mice reveals fundamental role of the ductular reaction
Cited by: 22
Author(s): Kenji Kamimoto, Yasuhiro Nakano, Kota Kaneko, Atsushi Miyajima, Tohru Itoh
Software Mentions: 4
Published: over 4 years ago

10.1038/s42003-020-0896-2

Ultra-high throughput single-cell analysis of proteins and RNAs by split-pool synthesis
Cited by: 10
Author(s): Maeve O’Huallachain, Felice-Alessio Bava, Mary Shen, Carolina Dallett, Sri Paladugu, Nikolay Samusik, Shichao Yu, Razika Hussein, Grantland Hillman, Samuel G. Higgins, Melanie Lou, Angelica Trejo, Laura Qin, Yu Chuan Tai, Shigemi Kinoshita, Astraea Jager, Deval Lashkari, Yury Goltsev, Sedide B. Ozturk, Garry P. Nolan
Software Mentions: 4
Published: over 4 years ago

10.1128/mSystems.00162-16

Balance Trees Reveal Microbial Niche Differentiation
Cited by: 217
Author(s): James T. Morton, Jon G. Sanders, Robert A. Quinn, Daniel McDonald, Antonio González, Yoshiki Vázquez-Baeza, José A. Navas-Molina, Se Jin Song, Jessica L. Metcalf, Embriette R. Hyde, Manuel E. Lladser, Pieter C. Dorrestein, Rob Knight
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2431-13-152

The swiss neonatal quality cycle, a monitor for clinical performance and tool for quality improvement
Cited by: 6
Author(s): Mark Adams, Tjade Claus Hoehre, Hans Ulrich Bucher
Software Mentions: 4
Published: about 11 years ago

10.3389/fmolb.2021.617176

BIO-GATS: A Tool for Automated GPCR Template Selection Through a Biophysical Approach for Homology Modeling
Cited by: 3
Author(s): Amara Jabeen, Ramya Vijayram, Shoba Ranganathan
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-017-1751-4

Quantiprot - a Python package for quantitative analysis of protein sequences
Cited by: 8
Author(s): Bogumił M. Konopka, Marta Anna Marciniak, Witold Dyrka
Software Mentions: 4
Published: over 7 years ago

10.1186/s12985-020-01394-y

Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria
Cited by: 21
Author(s): Cody Glickman, Sara M. Kammlade, Nabeeh A. Hasan, L. Elaine Epperson, Rebecca M. Davidson, Michael Strong
Software Mentions: 4
Published: over 4 years ago

10.1107/S1600576717016600

CAPOW: a standalone program for the calculation of optimal weighting parameters for least-squares crystallographic refinements
Cited by: 0
Author(s): Natalie T. Johnson, Holger Ott, Michael R. Probert
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00340-20

Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic
Cited by: 5
Author(s): Alison Vrbanac, Kathryn A. Patras, Alan K. Jarmusch, Robert H. Mills, Samuel R. Shing, Robert A. Quinn, Fernando Vargas, Kyung E. Rhee, Pieter C. Dorrestein, Rob Knight, Victor Nizet
Software Mentions: 4
Published: about 4 years ago

10.1186/1471-2202-13-S1-P13

A high-level, simulator independent, Python library for simulating small networks of multicompartmental neurons
Cited by: 0
Author(s): Michael Hull, David Willshaw
Software Mentions: 4
Published: over 12 years ago

10.1038/s41437-018-0177-8

MHC class I diversity predicts non-random mating in Chinese alligators (Alligator sinensis)
Cited by: 8
Author(s): Quan Han, Ru-Na Sun, Hai-Qiong Yang, Zhenwei Wang, Qiu‐Hong Wan, Sheng‐Guo Fang
Software Mentions: 4
Published: almost 6 years ago

10.1107/S1600576719012044

<i>DatView</i>: a graphical user interface for visualizing and querying large data sets in serial femtosecond crystallography
Cited by: 1
Author(s): Natasha Stander, Petra Fromme, Nadia A. Zatsepin
Software Mentions: 4
Published: about 5 years ago

10.1016/j.tine.2019.02.004

Whole-brain white matter organization, intelligence, and educational attainment
Cited by: 33
Author(s): Joe Bathelt, Gaia Scerif, Anna C. Nobre, Duncan E. Astle
Software Mentions: 4
Published: over 5 years ago

10.1038/s41419-020-03232-z

Molecular subtype-specific responses of colon cancer cells to the SMAC mimetic Birinapant
Cited by: 12
Author(s): Michael Fichtner, Emir Bozkurt, Manuela Salvucci, Christopher McCann, Katherine McAllister, Luise Halang, Heiko Düßmann, Sinéad Kinsella, Nyree Crawford, Tamas Sessler, Daniel B. Longley, Jochen H M Prehn
Software Mentions: 4
Published: almost 4 years ago

10.1016/j.cell.2019.10.010

Discovery of Human Signaling Systems: Pairing Peptides to G Protein-Coupled Receptors
Cited by: 143
Author(s): Simon R. Foster, Alexander S. Hauser, Line Vedel, Ryan T. Strachan, Xi Ping Huang, Ariana C. Gavin, Sushrut D. Shah, Ajay P. Nayak, Linda M. Haugaard‐Kedström, Raymond B. Penn, Bryan L. Roth, Hans Bräuner‐Osborne, David E. Gloriam
Software Mentions: 4
Published: about 5 years ago

10.15252/msb.20167233

A method for high‐throughput production of sequence‐verified <scp>DNA</scp> libraries and strain collections
Cited by: 36
Author(s): Justin D. Smith, Ulrich Schlecht, Weihong Xu, Sundari Suresh, Joe Horecka, Michael Proctor, Raeka S. Aiyar, Richard A. O. Bennett, Angela M. Chu, Yong Fuga Li, Kevin Roy, Ronald W. Davis, Lars M. Steinmetz, Richard W. Hyman, Sasha F. Levy, Robert P. St.Onge
Software Mentions: 4
Published: almost 8 years ago

10.15252/msb.20199356

Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer's disease
Cited by: 129
Author(s): Jakob Bader, Philipp E. Geyer, Johannes B. Müller-Reif, Maximilian T. Strauss, Manja Koch, Frank Leypoldt, Pèter Köertvelyessy, Daniel Bittner, Carola G. Schipke, Enise I. Incesoy, Oliver Peters, Nikolaus Deigendesch, Mikael Simons, Majken K. Jensen, Henrik Zetterberg, Matthias Mann
Software Mentions: 4
Published: over 4 years ago

10.1186/s12866-018-1341-2

The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus
Cited by: 46
Author(s): Alison Vrbanac, Angelica M. Riestra, Alison Coady, Rob Knight, Victor Nizet, Kathryn A. Patras
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13015-015-0061-5

Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics
Cited by: 7
Author(s): Katja Reichel, Valentin Bahier, Cédric Midoux, Nicolas Parisey, Jean-Pierre Masson, Solenn Stoeckel
Software Mentions: 4
Published: almost 9 years ago

10.3390/cancers12123844

Deep Learning Prediction of Cancer Prevalence from Satellite Imagery
Cited by: 6
Author(s): Jean‐Emmanuel Bibault, Maxime Bassenne, Hongyi Ren, Xing Li
Software Mentions: 4
Published: almost 4 years ago

10.3389/fncir.2014.00005

A spiking neural network model of self-organized pattern recognition in the early mammalian olfactory system
Cited by: 22
Author(s): Bernhard Kaplan, Anders Lansner
Software Mentions: 4
Published: almost 11 years ago

10.1109/tbdata.2020.3035935

COVID-19-CT-CXR: A Freely Accessible and Weakly Labeled Chest X-Ray and CT Image Collection on COVID-19 From Biomedical Literature
Cited by: 47
Author(s): Yifan Peng, Yuxing Tang, Sungwon Lee, Yingying Zhu, Ronald M. Summers, Zhiyong Lu
Software Mentions: 4
Published: over 3 years ago

10.1063/1.5132692

Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein
Cited by: 14
Author(s): David C. Wych, James S. Fraser, David L. Mobley, Michael E. Wall
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0233336

Artificial intelligence may offer insight into factors determining individual TSH level
Cited by: 7
Author(s): Prasanna Santhanam, Tanmay Nath, Faiz Khan Mohammad, Rexford S. Ahima
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2016.00427

Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry
Cited by: 16
Author(s): Potgieter Mg, Kehilwe C. Nakedi, Jon Ambler, Andrew J. M. Nel, Shaun Garnett, Nelson C. Soares, Nicola Mulder, Jonathan M. Blackburn
Software Mentions: 4
Published: over 8 years ago

10.7150/thno.55676

A panel of selected serum protein biomarkers for the detection of aggressive prostate cancer
Cited by: 12
Author(s): Jin Song, Shiyong Ma, Lori J. Sokoll, Rodrigo Vargas Eguez, Naseruddin Höti, Hui Zhang, Phaedre Mohr, Renu Dua, Dattatraya Patil, Kristen Douglas May, Sierra Williams, Rebecca S. Arnold, Martin G. Sanda, Daniel W. Chan, Zhen Zhang
Software Mentions: 4
Published: almost 4 years ago

10.3390/molecules24142557

Systematic Assessment of Burst Impurity in Confocal-Based Single-Molecule Fluorescence Detection Using Brownian Motion Simulations
Cited by: 10
Author(s): Dolev Hagai, Eitan Lerner
Software Mentions: 4
Published: over 5 years ago

10.3390/s21093204

Hand Gesture Recognition Using EGaIn-Silicone Soft Sensors
Cited by: 10
Author(s): Sungtae Shin, Han Ul Yoon, Byung Hoon Yoo
Software Mentions: 4
Published: over 3 years ago

10.1080/19490976.2021.1927635

Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms
Cited by: 8
Author(s): Patrick Browne, Frederik Cold, Andreas Munk Petersen, Sofie Ingdam Halkjær, Alice Højer Christensen, Stig Günther, Lars Hestbjerg Hansen
Software Mentions: 4
Published: almost 4 years ago

10.1002/aps3.1238

Phenotypic variation of cassava root traits and their responses to drought
Cited by: 27
Author(s): Jitrana Kengkanna, Phissinee Jakaew, Suwaluk Amawan, Natalie Busener, Alexander Bucksch, Patompong Saengwilai
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0101499

Functional Changes in Littoral Macroinvertebrate Communities in Response to Watershed-Level Anthropogenic Stress
Cited by: 19
Author(s): Katya E. Kovalenko, Valerie Brady, Jan J. H. Ciborowski, S. Ilyushkin, Lucinda B. Johnson
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0230327

Simulation model of CA1 pyramidal neurons reveal opposing roles for the Na+/Ca2+ exchange current and Ca2+-activated K+ current during spike-timing dependent synaptic plasticity
Cited by: 2
Author(s): Damien M. O’Halloran
Software Mentions: 4
Published: over 4 years ago

10.3390/s19235310

Robust Cylindrical Panorama Stitching for Low-Texture Scenes Based on Image Alignment Using Deep Learning and Iterative Optimization
Cited by: 9
Author(s): Kang Lai, Yingmei Wei, Jie Jiang, Yi Xie
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12916-021-01963-0

Variation in hypertension clinical practice guidelines: a global comparison
Cited by: 15
Author(s): Richu Philip, Thomas Beaney, Nick Appelbaum, Carmen Rodríguez Gonzálvez, Charlotte Koldeweij, Amelia Kataria Golestaneh, Jonathan Clarke
Software Mentions: 4
Published: over 3 years ago

10.1038/s42003-020-01442-x

Cerebellar and hepatic alterations in ACBD5-deficient mice are associated with unexpected, distinct alterations in cellular lipid homeostasis
Cited by: 15
Author(s): Warda Darwisch, Marino von Spangenberg, Jana Lehmann, Öznur Singin, Geralt Deubert, Sandra Kühl, Johannes Roos, Heinz Horstmann, Christoph Körber, Simone Hoppe, Hongwei Zheng, Thomas Kuner, Mia L. Pras‐Raves, Antoine H. C. van Kampen, Hans R. Waterham, Kathrin Schwarz, Jürgen G. Okun, Christian Schultz, Frédéric M. Vaz, Markus Islinger
Software Mentions: 4
Published: almost 4 years ago

10.1038/s42003-019-0391-9

Pharmacological systems analysis defines EIF4A3 functions in cell-cycle and RNA stress granule formation
Cited by: 25
Author(s): Alborz Mazloomian, Shinsuke Araki, Momoko Ohori, Amal M. El-Naggar, Damian Yap, Ali Bashashati, Shigetomi Nakao, Poul H. Sorensen, Atsushi Nakanishi, Sohrab P. Shah, Samuel Aparicio
Software Mentions: 4
Published: over 5 years ago

10.1016/j.molcel.2019.11.010

Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α
Cited by: 70
Author(s): Kevin Klann, Georg Tascher, Christian Münch
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.642600

Metabolic Reliance on Photosynthesis Depends on Both Irradiance and Prey Availability in the Mixotrophic Ciliate, Strombidium cf. basimorphum
Cited by: 3
Author(s): Erin Ann Hughes, Maira Maselli, Helle Sørensen, Per Juel Hansen
Software Mentions: 4
Published: over 3 years ago

10.3389/fimmu.2020.552596

Toward a Better Understanding of Bioassays for the Development of Biopharmaceuticals by Exploring the Structure-Antibody-Dependent Cellular Cytotoxicity Relationship in Human Primary Cells
Cited by: 2
Author(s): Sébastien Wieckowski, Cécile Avenal, Arturo V. Orjalo, Daniel Gygax, Florian Cymer
Software Mentions: 4
Published: about 4 years ago

10.1002/pro.3986

In‐depth interrogation of protein thermal unfolding data with <scp>MoltenProt</scp>
Cited by: 25
Author(s): Vadim Kotov, Georg Mlynek, Oliver Vesper, Marina Pletzer, Jiri Wald, Celso M. Teixeira-Duarte, Hervé Célia, María García-Alai, Stephan Nußberger, Susan K. Buchanan, J.H. Morais-Cabral, Christian Löw, Kristina Djinović-Carugo, Thomas C. Marlovits
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0009595

The Viscoelastic Properties of Passive Eye Muscle in Primates. III: Force Elicited by Natural Elongations
Cited by: 19
Author(s): Christian Quaia, Howard S. Ying, Lance M. Optican
Software Mentions: 4
Published: over 14 years ago

10.1038/s41598-021-84003-4

Combined unsupervised-supervised machine learning for phenotyping complex diseases with its application to obstructive sleep apnea
Cited by: 12
Author(s): Eun Yeol, Jeong Whun Kim, Young-Min Lee, Sung Woo Cho, Heeyoung Kim, Jae Kyoung Kim
Software Mentions: 4
Published: over 3 years ago

10.1155/2014/121782

Towards the Novel Reasoning among Particles in PSO by the Use of RDF and SPARQL
Cited by: 17
Author(s): Iztok Fister, Xin-She Yang, Karin Ljubič, Dušan Fister, Janez Brest
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0121233

Disease Specific Productivity of American Cancer Hospitals
Cited by: 0
Author(s): Jeffrey A. Goldstein, Vinay Prasad
Software Mentions: 4
Published: over 9 years ago

10.1186/s40168-020-00909-7

Hill-based dissimilarity indices and null models for analysis of microbial community assembly
Cited by: 21
Author(s): Oskar Modin, Raquel Liébana, Soroush Saheb-Alam, Britt‐Marie Wilén, Carolina Suarez, Malte Hermansson, Frank Persson
Software Mentions: 4
Published: about 4 years ago

10.1186/s40168-018-0550-0

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
Cited by: 67
Author(s): Johannes Alneberg, Christofer M. G. Karlsson, Anna-Maria Divne, Claudia Bergin, Félix Homa, Markus V. Lindh, Luisa W. Hugerth, Thijs J. G. Ettema, Stefan Bertilsson, Anders F. Andersson, Jarone Pinhassi
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0182056

Dynamics and asymmetry in the dimer of the norovirus major capsid protein
Cited by: 8
Author(s): Thibault Tubiana, Yves Boulard, Stéphane Bressanelli
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-80926-6

Multi-slice ptychography enables high-resolution measurements in extended chemical reactors
Cited by: 11
Author(s): Maik Kahnt, Lukas Grote, Dennis Brückner, Martin Seyrich, Felix Wittwer, Dorota Koziej, Christian G. Schroer
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-021-81269-6

Chronic BDNF simultaneously inhibits and unmasks superficial dorsal horn neuronal activity
Cited by: 4
Author(s): Sascha R.A. Alles, Max A. Odem, Van B. Lu, Ryan M. Cassidy, Peter A. Smith
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12864-016-2502-z

Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia
Cited by: 71
Author(s): Charles H. D. Williamson, Jason W. Sahl, Theresa J. Smith, Gary Xie, Brian Foley, Leonard A. Smith, Rafael Fernández, Miia Lindström, Hannu Korkeala, Paul Keim, Jeffrey T. Foster, Karen K. Hill
Software Mentions: 4
Published: over 8 years ago

10.1016/j.ymeth.2017.09.010

Optimized processing and analysis of conventional confocal microscopy generated scanning FCS data
Cited by: 30
Author(s): Dominic Waithe, Falk Schneider, Jakub Chojnacki, Mathias P. Clausen, Dilip Shrestha, Jorge Bernardino de la Serna, Christian Eggeling
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0119807

Protocols and Programs for High-Throughput Growth and Aging Phenotyping in Yeast
Cited by: 48
Author(s): Paul P. Jung, Nils Christian, Daniel P. Kay, Alexander Skupin, Carole L. Linster
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-021-04117-4

MAPS: machine-assisted phenotype scoring enables rapid functional assessment of genetic variants by high-content microscopy
Cited by: 3
Author(s): Jesse T. Chao, Calvin D. Roskelley, Christopher Loewen
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2105-13-209

Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
Cited by: 116
Author(s): Eric Talevich, Brandon M. Invergo, Peter J. A. Cock, Brad Chapman
Software Mentions: 4
Published: over 12 years ago

10.1038/s41598-020-74064-2

Sea ice variability and maritime activity around Svalbard in the period 2012–2019
Cited by: 25
Author(s): Alexandra Stocker, Angelika Renner, Maaike Knol-Kauffman
Software Mentions: 4
Published: about 4 years ago

10.3390/metabo11070441

Hyperpolarized Dihydroxyacetone Is a Sensitive Probe of Hepatic Gluconeogenic State
Cited by: 7
Author(s): Mukundan Ragavan, Marc McLeod, Anthony Giacalone, Matthew E. Merritt
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-76635-9

Early and accurate detection and diagnosis of heart disease using intelligent computational model
Cited by: 56
Author(s): Yar Muhammad, Muhammad Tahir, Maqsood Hayat, Kil To Chong
Software Mentions: 4
Published: about 4 years ago

10.3390/metabo11090633

A Targeted Serum Metabolomics GC-MS Approach Identifies Predictive Blood Biomarkers for Retained Placenta in Holstein Dairy Cows
Cited by: 4
Author(s): Guanshi Zhang, Dawid Tobolski, Grzegorz Zwierzchowski, Rupasri Mandal, David S. Wishart, Burim N. Ametaj
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0085777

powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions
Cited by: 663
Author(s): Jeff Alstott, Edward T. Bullmore, Dietmar Plenz
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12859-019-2596-9

Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks
Cited by: 8
Author(s): André Voigt, Eivind Almaas
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0236495

An unbiased template of the Drosophila brain and ventral nerve cord
Cited by: 57
Author(s): John A. Bogovic, Hideo Otsuna, Larissa Heinrich, Masayoshi Ito, Jennifer Jeter, Geoffrey W. Meissner, Aljoscha Nern, Jennifer Colonell, Oz Malkesman, Kei Ito, Stephan Saalfeld
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-67523-3

Horseback riding pathways and harbors at the beginning of the colonial era in Mexico
Cited by: 1
Author(s): Igor Lugo, Martha G. Alatriste‐Contreras
Software Mentions: 4
Published: over 4 years ago

10.1534/g3.114.016238

A Survey of Imprinted Gene Expression in Mouse Trophoblast Stem Cells
Cited by: 27
Author(s): J. Mauro Calabrese, Joshua Starmer, Megan D. Schertzer, Della Yee, Terry Magnuson
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-020-59549-4

Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii
Cited by: 7
Author(s): Katrine Højholt Iversen, Louise Rasmussen, Kosai Al-Nakeeb, José Juan Almagro Armenteros, Christian Salgård Jensen, Rimtas Dargis, Oksana Lukjancenko, Ulrik Stenz Justesen, Claus Moser, Flemming Schønning Rosenvinge, Xiaohui Chen Nielsen, Jens Jørgen Christensen, Simon Rasmussen
Software Mentions: 4
Published: almost 5 years ago

10.3389/fendo.2021.714561

Biased Coupling to β-Arrestin of Two Common Variants of the CB2 Cannabinoid Receptor
Cited by: 9
Author(s): Gábor Turu, Eszter Soltész‐Katona, András Tóth, C.C. Juhasz, Miklós Cserző, Ádám Misák, András Balla, Marc G. Caron, László Hunyady
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0203839

Using wearable sensors to classify subject-specific running biomechanical gait patterns based on changes in environmental weather conditions
Cited by: 40
Author(s): Nizam Uddin Ahamed, Dylan Kobsar, Lauren C. Benson, Christian A. Clermont, Russell Kohrs, Sean T. Osis, Reed Ferber
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-021-07491-8

A first insight into the genome of Prototheca wickerhamii, a major causative agent of human protothecosis
Cited by: 8
Author(s): Zofia Bakuła, Paweł Siedlecki, Robert Gromadka, Jan Gawor, Agnieszka Gromadka, Jan J. Pomorski, Hanna Panagiotopoulou, Tomasz Jagielski
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2020.01003

The MADS-Box Gene MdDAM1 Controls Growth Cessation and Bud Dormancy in Apple
Cited by: 33
Author(s): Mirko Moser, Elisa Asquini, Giulia Valentina Miolli, Kathleen Weigl, Magda‐Viola Hanke, Henryk Flachowsky, Azeddine Si‐Ammour
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pmed.1002697

Automated detection of moderate and large pneumothorax on frontal chest X-rays using deep convolutional neural networks: A retrospective study
Cited by: 146
Author(s): Andrew G. Taylor, Clinton Mielke, John Mongan
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-46686-8

High-throughput stability screening for detergent-solubilized membrane proteins
Cited by: 69
Author(s): Vadim Kotov, Kim Bartels, Katharina Veith, Inokentijs Josts, Udaya Kumar Tiruttani Subhramanyam, Christian Günther, Jörg Labahn, Thomas C. Marlovits, Isabel Moraes, Henning Tidow, Christian Löw, María García-Alai
Software Mentions: 4
Published: over 5 years ago

10.1186/s12863-016-0388-z

Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms
Cited by: 40
Author(s): Katja Reichel, Jean-Pierre Masson, Florent Malrieu, Sophie Arnaud‐Haond, Solenn Stoeckel
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-019-47857-3

Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria
Cited by: 37
Author(s): Harrison Edwards, Raga Krishnakumar, Anupama Sinha, Sara W. Bird, Kamlesh D. Patel, Michael Bartsch
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009221

Short-range template switching in great ape genomes explored using pair hidden Markov models
Cited by: 10
Author(s): Conor R Walker, Aylwyn Scally, Nicola De Maio, Nick Goldman
Software Mentions: 4
Published: over 3 years ago

10.3389/fncom.2013.00112

Anisotropic connectivity implements motion-based prediction in a spiking neural network
Cited by: 10
Author(s): Bernhard Kaplan, Anders Lansner, Guillaume S. Masson, Laurent Perrinet
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pgen.1009774

A scalable Drosophila assay for clinical interpretation of human PTEN variants in suppression of PI3K/AKT induced cellular proliferation
Cited by: 4
Author(s): Payel Ganguly, Landiso Madonsela, Jesse T. Chao, Christopher Loewen, Timothy P. O’Connor, Esther M. Verheyen, Douglas W. Allan
Software Mentions: 4
Published: about 3 years ago

10.1186/s12862-017-0999-7

Minimal tool set for a prokaryotic circadian clock
Cited by: 42
Author(s): Nicolas Schmelling, Robert Lehmann, Paushali Chaudhury, Christian Beck, Sonja‐Verena Albers, Ilka M. Axmann, Anika Wiegard
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-39773-3

Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation
Cited by: 34
Author(s): Jorge Moura de Sousa, Eduardo P. C. Rocha
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-53599-z

Effects of sampling strategy and DNA extraction on human skin microbiome investigations
Cited by: 67
Author(s): Rie Dybboe Bjerre, Luisa W. Hugerth, Fredrik Boulund, Maike Seifert, Jeanne Duus Johansen, Lars Engstrand
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2014.00406

Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus
Cited by: 27
Author(s): Allison Creason, Edward W. Davis, M. L. Putnam, Olivier M. Vandeputte, Jeff H. Chang
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pcbi.1002952

Spatial Pattern Dynamics of 3D Stem Cell Loss of Pluripotency via Rules-Based Computational Modeling
Cited by: 31
Author(s): David W. White, Melissa A. Kinney, Todd C. McDevitt, Melissa L. Kemp
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pcbi.1004478

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome
Cited by: 37
Author(s): Marco Galardini, Matteo Brilli, Giulia Spini, Matteo Rossi, Bianca Roncaglia, Aïda Bani, Chiancianesi Manuela, Marco Moretto, Kristof Engelen, Giovanni Bacci, Francesco Pini, Emanuele G. Biondi, Marco Bazzicalupo, Alessio Mengoni
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-018-33900-2

Using volunteered observations to map human exposure to ticks
Cited by: 23
Author(s): Irene Garcia‐Martí, R. Zurita-Milla, Margriet Harms, Arno Swart
Software Mentions: 4
Published: about 6 years ago

10.3390/biom11040549

Conformational Plasticity-Rigidity Axis of the Coagulation Factor VII Zymogen Elucidated by Atomistic Simulations of the N-Terminally Truncated Factor VIIa Protease Domain
Cited by: 6
Author(s): Jesper J. Madsen, Ole H. Olsen
Software Mentions: 4
Published: over 3 years ago

10.3389/fpubh.2020.580327

Global Forecasting Confirmed and Fatal Cases of COVID-19 Outbreak Using Autoregressive Integrated Moving Average Model
Cited by: 42
Author(s): Debabrata Dansana, Raghvendra Kumar, Janmejoy Das Adhikari, Mans Mohapatra, Rohit Sharma, Ishaani Priyadarshini, Dac‐Nhuong Le
Software Mentions: 4
Published: about 4 years ago

10.1155/2017/2794040

The Effect of Different Pollination on the Expression of Dangshan Su Pear MicroRNA
Cited by: 12
Author(s): Xi Cheng, Chongchong Yan, Jinyun Zhang, Chenhui Ma, Shumei Li, Qing Jin, Nan Zhang, Yunpeng Cao, Yi Lin, Yongping Cai
Software Mentions: 4
Published: almost 8 years ago

10.1038/srep36493

Big genomics and clinical data analytics strategies for precision cancer prognosis
Cited by: 18
Author(s): Ghim Siong Ow, Vladimir A. Kuznetsov
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pcbi.1008554

Ten simple rules for navigating the computational aspect of an interdisciplinary PhD
Cited by: 1
Author(s): Sabrina Islam, Christine A. Wells
Software Mentions: 4
Published: almost 4 years ago

10.1364/BOE.416737

Dual-view light-sheet imaging through a tilted glass interface using a deformable mirror
Cited by: 7
Author(s): Nikita Vladimirov, Friedrich Preußer, Jan Wiśniewski, Ziv Yaniv, Ravi A. Desai, Andrew Woehler, Stephan Preibisch
Software Mentions: 4
Published: over 3 years ago

10.1186/s12915-020-00911-3

CloneSifter: enrichment of rare clones from heterogeneous cell populations
Cited by: 11
Author(s): David Feldman, FuNien Tsai, Anthony J. Garrity, Ryan O’Rourke, Lisa Brenan, Patricia Ho, Elizabeth M. Gonzalez, Silvana Konermann, Cory M. Johannessen, Rameen Beroukhim, Pratiti Bandopadhayay, Paul C. Blainey
Software Mentions: 4
Published: almost 4 years ago

Projects: pypi: matplotlib

Papers Mentioning matplotlib 1,045