pypi: language | Projects | Ecosyste.ms: Papers

10.1371/journal.ppat.1005811

The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1
Cited by: 106
Author(s): Daniel Couto, Roda Niebergall, Xiangxiu Liang, Christoph A. Bücherl, Jan Sklenář, Alberto P. Macho, Vardis Ntoukakis, Paul Derbyshire, Denise Altenbach, Dan MacLean, Silke Robatzek, Joachim F. Uhrig, Frank L.H. Menke, Jian‐Min Zhou, Cyril Zipfel
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.ppat.1006112

Early Antiretroviral Therapy Is Associated with Lower HIV DNA Molecular Diversity and Lower Inflammation in Cerebrospinal Fluid but Does Not Prevent the Establishment of Compartmentalized HIV DNA Populations
Cited by: 51
Author(s): Michelli F. Oliveira, Antoine Chaillon, Masato Nakazawa, Milenka V. Vargas, Scott Letendre, Matthew C. Strain, Ronald J. Ellis, Sheldon R. Morris, Susan J. Little, Davey M. Smith, Sara Gianella
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12874-015-0081-3

Statistical power in parallel group point exposure studies with time-to-event outcomes: an empirical comparison of the performance of randomized controlled trials and the inverse probability of treatment weighting (IPTW) approach
Cited by: 9
Author(s): Peter C. Austin, Tibor Schuster, Robert W. Platt
Software Mentions: 3
Published: about 9 years ago

10.1186/s12979-015-0038-8

Hormetic effect of rotenone in primary human fibroblasts
Cited by: 13
Author(s): Shiva Marthandan, Stefan Priebe, Marco Groth, Reinhard Guthke, Matthias Platzer, Peter Hemmerich, Stephan Diekmann
Software Mentions: 3
Published: about 9 years ago

10.1186/s12944-015-0062-x

Modulation of the lipidomic profile due to a lipid challenge and fitness level: a postprandial study
Cited by: 19
Author(s): Ciara Morris, Colm O’Grada, Mary Morgan Ryan, Michael J. Gibney, Helen M. Roche, Eileen R. Gibney, Lorraine Brennan
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0257639

Examining the impact of a community-based exercise intervention on cardiorespiratory fitness, cardiovascular health, strength, flexibility and physical activity among adults living with HIV: A three-phased intervention study
Cited by: 9
Author(s): Kelly K O’Brien, Aileen M. Davis, Soo Chan Carusone, Lisa Avery, Ada Tang, Patricia Solomon, Rachel Aubry, Mehdi Zobeiry, Ivan Ilić, Zoran Pandovski, Ahmed M. Bayoumi
Software Mentions: 3
Published: about 3 years ago

10.3390/life11030219

SARS-CoV-2 Molecular Transmission Clusters and Containment Measures in Ten European Regions during the First Pandemic Wave
Cited by: 7
Author(s): Maria Bousali, Aristea Dimadi, Evangelia Georgia Kostaki, Sotirios Tsiodras, Georgios K. Nikolopoulos, Dionyssios N. Sgouras, Gkikas Magiorkinis, George V. Papatheodoridis, Vasiliki Pogka, Giota Lourida, Aikaterini Argyraki, Emmanouil Angelakis, George Sourvinos, Apostolos Beloukas, Dimitrios Paraskevis, Timokratis Karamitros
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0186742

Spatial relationships between above-ground biomass and bird species biodiversity in Palawan, Philippines
Cited by: 5
Author(s): Minerva Singh, Daniel A. Friess, Bruno Vilela, Jose Don T. De Alban, A. Monzón, Rizza Veridiano, Roven D. Tumaneng
Software Mentions: 3
Published: almost 7 years ago

10.3389/fphar.2020.602030

A Novel Text-Mining Approach for Retrieving Pharmacogenomics Associations From the Literature
Cited by: 3
Author(s): Maria‐Theodora Pandi, Peter J. van der Spek, Maria Koromina, George P. Patrinos
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0254697

Cell-cell adhesion regulates Merlin/NF2 interaction with the PAF complex
Cited by: 1
Author(s): Anne E. Roehrig, Kristina Klupsch, Juan Oses-Prieto, Selim Chaib, Stephen Henderson, Warren Emmett, Lucy C. Young, Silvia Šurinová, Andreas Blees, Anett Pfeiffer, Maha Tijani, Fabian Brunk, Nicole Hartig, Marta Muñoz-Alegre, Alexander Hergovich, Barbara Jennings, Alma L. Burlingame, Pablo Rodríguez‐Viciana
Software Mentions: 3
Published: about 3 years ago

10.3389/fimmu.2017.01992

Gene Expression Analysis Reveals Novel Shared Gene Signatures and Candidate Molecular Mechanisms between Pemphigus and Systemic Lupus Erythematosus in CD4+ T Cells
Cited by: 39
Author(s): Tanya Sezin, Artem Vorobyev, Christian D. Sadik, Detlef Zillikens, Yask Gupta, Ralf J. Ludwig
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0226224

A geographically weighted random forest approach for evaluate forest change drivers in the Northern Ecuadorian Amazon
Cited by: 19
Author(s): Fabián Santos, Valerie Graw, Santiago Bonilla
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0243270

The transcriptomic profiling of SARS-CoV-2 compared to SARS, MERS, EBOV, and H1N1
Cited by: 27
Author(s): Alsamman M. Alsamman, Hatem Zayed
Software Mentions: 3
Published: almost 4 years ago

10.3390/e22121414

Whole Time Series Data Streams Clustering: Dynamic Profiling of the Electricity Consumption
Cited by: 5
Author(s): Krzysztof Gajowniczek, Marcin Bator, Tomasz Ząbkowski
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0111262

Consensus between Pipelines in Structural Brain Networks
Cited by: 20
Author(s): Christopher S. Parker, Fani Deligianni, M. Jorge Cardoso, Pankaj Daga, Marc Modat, Michael Dayan, Chris A. Clark, Sébastien Ourselin, Jonathan D. Clayden
Software Mentions: 3
Published: about 10 years ago

10.15252/embj.2019102147

<scp>SLC</scp> 1A3 contributes to L‐asparaginase resistance in solid tumors
Cited by: 40
Author(s): Jianhui Sun, Remco Nagel, Esther A. Zaal, Alejandro P. Ugalde, Ruiqi Han, Natalie Proost, Ji Ying Song, Abhijeet Pataskar, Artur M Burylo, Haigen Fu, Gerrit J. Poelarends, Marieke van de Ven, Olaf van Tellingen, Celia R. Berkers, Reuven Agami
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.4841

Multiple facets of stream macroinvertebrate alpha diversity are driven by different ecological factors across an extensive altitudinal gradient
Cited by: 30
Author(s): Zhengfei Li, Xiaoming Jiang, Jun Wang, Xingliang Meng, Jani Heino, Zhicai Xie
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0073573

Altered Expression of Cyclin A 1 In Muscle of Patients with Facioscapulohumeral Muscle Dystrophy (FSHD-1)
Cited by: 9
Author(s): Anna Pakuła, Joanna Schneider, Jürgen Janke, Ute Zacharias, Herbert Schulz, Norbert Hübner, Anja Mähler, Andreas Spuler, Simone Spuler, Pierre Carlier, Michael Boschmann
Software Mentions: 3
Published: about 11 years ago

10.1186/s13148-017-0409-4

Identification of a key role of widespread epigenetic drift in Barrett’s esophagus and esophageal adenocarcinoma
Cited by: 17
Author(s): E. Georg Luebeck, Kit Curtius, William D. Hazelton, Sean K. Maden, Ming Yu, Prashanthi N. Thota, Deepa T. Patil, Amitabh Chak, Joseph E. Willis, William M. Grady
Software Mentions: 3
Published: about 7 years ago

10.1186/s13195-018-0410-y

Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels
Cited by: 14
Author(s): Taylor J. Maxwell, Chris Corcoran, Jorge L. Del‐Aguila, John Budde, Yuetiva Deming, Carlos Cruchaga, Alison Goate, John S. K. Kauwe
Software Mentions: 3
Published: about 6 years ago

10.1093/database/bau131

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study
Cited by: 49
Author(s): José Villaveces, Rafael C. Jiménez, Pablo Porras, Noemi del-Toro, Margaret Duesbury, Marine Dumousseau, Sandra Orchard, Hongyoon Choi, Peipei Ping, Nansu Zong, Manor Askenazi, Bianca Habermann, Henning Hermjakob
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0157776

A Genome-Wide mQTL Analysis in Human Adipose Tissue Identifies Genetic Variants Associated with DNA Methylation, Gene Expression and Metabolic Traits
Cited by: 86
Author(s): Petr Volkov, Anna Olsson, Linn Gillberg, Steffen Jørgensen, Charlotte Brøns, Kerstin Eriksson, Leif Groop, Per Anders Jansson, Erika Nilsson, Tina Rönn, Allan Vaag, Charlotte Ling
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0214057

Effect of information about the benefits and harms of mammography on women’s decision making: The InforMa randomised controlled trial
Cited by: 31
Author(s): María José Pérez-Lacasta, Montserrat Martínez-Alonso, Montse Garcia, María Sala, Lilisbeth Perestelo-Pérez, Carmen Vidal, Núria Codern-Bové, María Feijoo-Cid, Ana Toledo-Chávarri, Àngels Cardona, Anna Pons, Misericòrdia Carles-Lavila, Montserrat Rué
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.7262

miR-451a is underexpressed and targets AKT/mTOR pathway in papillary thyroid carcinoma
Cited by: 72
Author(s): Emanuela Minna, Paola Romeo, Matteo Dugo, Loris De Cecco, Katia Todoerti, Silvana Pilotti, Francesco Perrone, Ettore Seregni, Luca Agnelli, Antonino Neri, Angela Greco, Maria Grazia Borrello
Software Mentions: 3
Published: almost 9 years ago

10.3390/ijms21228420

Methods and Applications of In Silico Aptamer Design and Modeling
Cited by: 59
Author(s): Andrey A. Buglak, А. В. Самохвалов, Anatoly V. Zherdev, Boris B. Dzantiev
Software Mentions: 3
Published: about 4 years ago

10.7554/eLife.64159

Cerebrospinal fluid proteome maps detect pathogen-specific host response patterns in meningitis
Cited by: 11
Author(s): Anahita Bakochi, Tirthankar Mohanty, Paul Theodor Pyl, Carlos Gueto-Tettay, Lars Malmström, Adam Linder, Johan Malmström
Software Mentions: 3
Published: over 3 years ago

10.1128/mBio.00987-21

Shared and Unique Evolutionary Trajectories to Ciprofloxacin Resistance in Gram-Negative Bacterial Pathogens
Cited by: 7
Author(s): Jaime E. Zlamal, Semen A. Leyn, Mallika Iyer, Marinela L. Elane, Nicholas Wong, James W. Wamsley, Maarten Vercruysse, Fernando García-Alcalde, Andrei L. Osterman
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.28023

Cell differentiation defines acute and chronic infection cell types in Staphylococcus aureus
Cited by: 53
Author(s): Juan Carlos García-Betancur, Ángel Goñi-Moreno, Thomas Horger, Melanie Schott, Malvika Sharan, Julian Eikmeier, Barbara Wohlmuth, Alma Zernecke, Knut Ohlsen, Christina Kuttler, Daniel López
Software Mentions: 3
Published: about 7 years ago

10.1186/s12917-017-1161-x

Microbial community composition along the digestive tract in forage- and grain-fed bison
Cited by: 28
Author(s): Gaddy T. Bergmann
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-82074-x

The origin of the expressed retrotransposed gene ACTBL2 and its influence on human melanoma cells’ motility and focal adhesion formation
Cited by: 10
Author(s): Natalia Małek, Aleksandra Michrowska, Ewa Mazurkiewicz, Ewa Mrówczyńska, Paweł Mackiewicz, Antonina Joanna Mazur
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-75004-w

Topoisomerase IIβ targets DNA crossovers formed between distant homologous sites to induce chromatin opening
Cited by: 5
Author(s): Mary Miyaji, Ryohei Furuta, Osamu Hosoya, Kuniaki Sano, Norikazu Hara, Ryozo Kuwano, Jiyoung Kang, Masaru Tateno, Kimiko Tsutsui, Ken Tsutsui
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-76523-2

Biases in national and continental flood risk assessments by ignoring spatial dependence
Cited by: 11
Author(s): Việt Dũng Nguyễn, Ayse Duha Metin, Lorenzo Alfieri, Sergiy Vorogushyn, Bruno Merz
Software Mentions: 2
Published: about 4 years ago

10.1186/s13007-015-0087-1

Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana
Cited by: 21
Author(s): Jason S. Cumbie, Sergei A. Filichkin, Molly Megraw
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-019-51789-3

dendPoint: a web resource for dendrimer pharmacokinetics investigation and prediction
Cited by: 31
Author(s): Lisa M. Kaminskas, Douglas E V Pires, David B. Ascher
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.11453

Comprehensive transcriptome analysis of peripheral blood unravels key lncRNAs implicated in ABPA and asthma
Cited by: 0
Author(s): Chen Huang, Dongliang Leng, Peiyan Zheng, Min Deng, Lu Li, Ge Wu, Baoqing Sun, Xiaohua Douglas Zhang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12918-016-0380-2

JuPOETs: a constrained multiobjective optimization approach to estimate biochemical model ensembles in the Julia programming language
Cited by: 9
Author(s): David M. Bassen, Michael Vilkhovoy, Mason Minot, Jonathan T. Butcher, Jeffrey D. Varner
Software Mentions: 2
Published: almost 8 years ago

10.1155/2014/354246

Simulation and Modeling Efforts to Support Decision Making in Healthcare Supply Chain Management
Cited by: 33
Author(s): Eman AbuKhousa, Jameela Al-Jaroodi, Sanja Lazarova-Molnar, Nader Mohamed
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-017-16829-w

Age-dependent increase of oxidative stress regulates microRNA-29 family preserving cardiac health
Cited by: 47
Author(s): Johanna Heid, Chiara Cencioni, Roberto Ripa, Mario Baumgart, Sandra Atlante, Giuseppina Milano, Alessandro Scopece, Carsten Kuenne, Stefan Guenther, Valerio Azzimato, Antonella Farsetti, Giacomo Rossi, Thomas Braun, Giulio Pompilio, Fabio Martelli, Andreas M. Zeiher, Alessandro Cellerino, Carlo Gaetano, Francesco Spallotta
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep44389

A novel strategy for clustering major depression individuals using whole-genome sequencing variant data
Cited by: 16
Author(s): Chenglong Yu, Bernhard T. Baune, Júlio Licinio, Ma Li Wong
Software Mentions: 2
Published: over 7 years ago

10.1186/s12902-021-00696-8

Nomogram to predict the risk of acute kidney injury in patients with diabetic ketoacidosis: an analysis of the MIMIC-III database
Cited by: 11
Author(s): Tingting Fan, Haosheng Wang, Jiaxin Wang, Wenrui Wang, Haifei Guan, Chuan Zhang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-017-17085-8

Early-Mid Pleistocene genetic differentiation and range expansions as exemplified by invasive Eurasian Bunias orientalis (Brassicaceae) indicates the Caucasus as key region
Cited by: 13
Author(s): Marcus A. Koch, Florian Michling, Andrea C. Walther, Xiao‐Chen Huang, Lisa-Johanna Tewes, Caroline Müller
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12889-020-09582-9

Health status of female Moldovan migrants to Italy by health literacy level and age group: a descriptive study
Cited by: 5
Author(s): Francesca Alice Vianello, Federica Zaccagnini, Carlo Pinato, Pietro Maculan, Alessandra Buja
Software Mentions: 2
Published: about 4 years ago

10.1038/s41597-020-00577-0

A long-term dataset on wild bee abundance in Mid-Atlantic United States
Cited by: 7
Author(s): Melanie Kammerer, John F. Tooker, Christina M. Grozinger
Software Mentions: 2
Published: over 4 years ago

10.1093/aobpla/ply010

Intercropping with wheat lowers nutrient uptake and biomass accumulation of maize, but increases photosynthetic rate of the ear leaf
Cited by: 23
Author(s): Fang Gou, M.K. van Ittersum, Antoine Couëdel, Yue Zhang, Yajun Wang, P.E.L. van der Putten, Lizhen Zhang, Wopke Van der Werf
Software Mentions: 2
Published: almost 7 years ago

10.1186/s40478-018-0642-x

GJA1 (connexin43) is a key regulator of Alzheimer’s disease pathogenesis
Cited by: 54
Author(s): Yuji Kajiwara, Erming Wang, Minghui Wang, Wun Chey Sin, Kristen J. Brennand, Eric E. Schadt, Christian C. Naus, Joseph D. Buxbaum, Bin Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-019-1644-y

Elevated CO2 concentration promotes photosynthesis of grape (Vitis vinifera L. cv. ‘Pinot noir’) plantlet in vitro by regulating RbcS and Rca revealed by proteomic and transcriptomic profiles
Cited by: 25
Author(s): Xin Zhao, Wenfang Li, Ying Wang, Zhiying Ma, Shuai Yang, Qi Zhou, Juan Mao, Baihong Chen
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00345-015-1650-0

Targeted transperineal biopsy of the prostate has limited additional benefit over background cores for larger MRI-identified tumors
Cited by: 8
Author(s): Tristan Barrett, Andrew J. Patterson, Brendan Koo, Karan Wadhwa, Anne Y. Warren, Andrew Doble, Vincent Gnanapragasam, Christof Kastner, Ferdia A. Gallagher
Software Mentions: 2
Published: over 9 years ago

10.1186/s40248-019-0168-5

Predictive factors for exacerbation and re-exacerbation in chronic obstructive pulmonary disease: an extension of the Cox model to analyze data from the Swiss COPD cohort
Cited by: 10
Author(s): Pascal Urwyler, Nebal Abu Hussein, Pierre Olivier Bridevaux, Prashant N. Chhajed, Thomas Geiser, Peter Grendelmeier, Ladina Joos Zellweger, Malcolm Kohler, Sabrina Maier, David Malka, Michael Tamm, Robert Thurnheer, Thomas Dieterle, Joerg D. Leuppi
Software Mentions: 2
Published: almost 6 years ago

10.1155/2014/347416

Continuous Dynamic Registration of Microvascularization of Liver Tumors with Contrast-Enhanced Ultrasound
Cited by: 10
Author(s): Lukas Philipp Beyer, Benedikt Pregler, Isabel Wiesinger, Christian Stroszczynski, P Wiggermann, Ernst Michael Jung
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12915-017-0360-z

Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana
Cited by: 33
Author(s): D. C. Prince, Ghanasyam Rallapalli, Deyang Xu, Henk‐jan Schoonbeek, Volkan Çevik, Shuji Asai, Eric Kemen, Neftaly Cruz-Mireles, Ariane Kemen, Khaoula Belhaj, Sebastián Schornack, Sophien Kamoun, Eric B. Holub, Jonathan D. G. Jones
Software Mentions: 2
Published: over 7 years ago

10.1017/S0033291716002099

Recent trends in primary-care antidepressant prescribing to children and young people: an e-cohort study
Cited by: 48
Author(s): Ann John, Amanda Marchant, David Lawrence Fone, Joanna McGregor, Michael Dennis, Jacinta Tan, Kenneth E. Lloyd
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0059648

Foods and Dietary Patterns That Are Healthy, Low-Cost, and Environmentally Sustainable: A Case Study of Optimization Modeling for New Zealand
Cited by: 113
Author(s): Nick Wilson, Nhung Nghiem, Cliona Ní Mhurchú, Helen Eyles, Michael G Baker, Tony Blakely
Software Mentions: 2
Published: over 11 years ago

10.1186/s12866-016-0748-x

Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya
Cited by: 78
Author(s): Anne Kelly Kambura, Romano Mwirichia, Remmy Kasili, Edward Nderitu Karanja, Huxley Mae Makonde, Hamadi Iddi Boga
Software Mentions: 2
Published: over 8 years ago

10.1074/mcp.RA120.002433

High-Throughput and Site-Specific N-Glycosylation Analysis of Human Alpha-1-Acid Glycoprotein Offers a Great Potential for New Biomarker Discovery
Cited by: 24
Author(s): Toma Keser, Marko Tijardović, Ivan Gornik, Edita Lukić, Gordan Lauc, Olga Gornik, Mislav Novokmet
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12885-016-2223-3

On Predicting lung cancer subtypes using ‘omic’ data from tumor and tumor-adjacent histologically-normal tissue
Cited by: 9
Author(s): Arturo López Pineda, Henry Ogoe, Jeya Balaji Balasubramanian, Claudia Rangel‐Escareño, Shyam Visweswaran, James G. Herman, Vanathi Gopalakrishnan
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0031522

Neurodegeneration and Motor Dysfunction in Mice Lacking Cytosolic and Mitochondrial Aldehyde Dehydrogenases: Implications for Parkinson's Disease
Cited by: 137
Author(s): Margaret Chia Ying Wey, Elízabeth Fernández, Paul Martínez, Patti Sullivan, David S. Goldstein, Randy Strong
Software Mentions: 2
Published: over 12 years ago

10.1098/rsos.161009

Red fluorescence of the triplefin<i>Tripterygion delaisi</i>is increasingly visible against background light with increasing depth
Cited by: 19
Author(s): Pierre‐Paul Bitton, Ulrike K. Harant, Roland Fritsch, Connor M. Champ, Shelby E. Temple, Nico K. Michiels
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0194745

Potential niche expansion of the American mink invading a remote island free of native-predatory mammals
Cited by: 13
Author(s): Ramiro D. Crego, Jaime E. Jiménez, Ricardo Rozzi
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0251692

What makes music memorable? Relationships between acoustic musical features and music-evoked emotions and memories in older adults
Cited by: 9
Author(s): Ilja Salakka, Anni Pitkäniemi, Emmi Pentikäinen, Kari Mikkonen, Pasi Saari, Petri Toiviainen, Teppo Särkämö
Software Mentions: 2
Published: over 3 years ago

10.1186/s13059-020-02085-1

Single-cell lineage analysis reveals genetic and epigenetic interplay in glioblastoma drug resistance
Cited by: 53
Author(s): Christine E. Eyler, Hironori Matsunaga, Volker Hovestadt, Samantha J. Vantine, Peter van Galen, B Bernstein
Software Mentions: 2
Published: over 4 years ago

10.1186/s12911-020-01175-1

Validation of an electronic coding algorithm to identify the primary indication of orthopedic surgeries from administrative data
Cited by: 4
Author(s): John C. Giardina, Thomas Cha, Steven J. Atlas, Michael J. Barry, Andrew A. Freiberg, Lauren Leavitt, Felisha Marques, Karen Sepucha
Software Mentions: 2
Published: over 4 years ago

10.1186/s13073-019-0676-0

Distinct patterns of complex rearrangements and a mutational signature of microhomeology are frequently observed in PLP1 copy number gain structural variants
Cited by: 19
Author(s): Vahid Bahrambeigi, Xiaofei Song, Karen Sperle, Christine R. Beck, Hadia Hijazi, Christopher M. Grochowski, Shen Gu, Pavel Seeman, Karen Woodward, Claudia M.B. Carvalho, Grace M. Hobson, James R. Lupski
Software Mentions: 2
Published: almost 5 years ago

10.3390/md15050125

Transcriptome Analysis of Core Dinoflagellates Reveals a Universal Bias towards “GC” Rich Codons
Cited by: 7
Author(s): Ernest Williams, Allen R. Place, Tsvetan R. Bachvaroff
Software Mentions: 2
Published: over 7 years ago

10.1186/s12936-020-03280-y

In silico analysis for factors affecting anti-malarial penetration into red blood cells
Cited by: 3
Author(s): Natapol Pornputtapong, Bovornpat Suriyapakorn, Anchisa Satayamapakorn, Kanidsorn Larpadisorn, Pariyachut Janviriyakul, Phisit Khemawoot
Software Mentions: 2
Published: over 4 years ago

10.3390/genes10120978

Artificial Intelligence (AI) in Rare Diseases: Is the Future Brighter?
Cited by: 58
Author(s): Sandra Brasil, Carlota Pascoal, Rita Francisco, Vanessa Ferreira, Paula A. Videira, Gonçalo Valadão
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0219436

Identification of lysine methylation in the core GTPase domain by GoMADScan
Cited by: 6
Author(s): Hirofumi Yoshino, Guowei Yin, Risa Karakida Kawaguchi, Konstantin Popov, Brenda Temple, Mika Sasaki, Satoshi Kofuji, Kara Wolfe, Kaori Kofuji, Kōichi Okumura, Jaskirat Randhawa, Akshiv Malhotra, Nazanin Majd, Yoshiki Ikeda, Hiroko Shimada, Emily Rose Kahoud, Sasson Haviv, Shigeki Iwase, John M. Asara, Sharon L. Campbell, Atsuo T. Sasaki
Software Mentions: 2
Published: over 5 years ago

10.26508/lsa.201900425

Stromal fibroblasts induce metastatic tumor cell clusters via epithelial–mesenchymal plasticity
Cited by: 46
Author(s): Yuko Matsumura, Yasuhiko Ito, Yoshihiro Mezawa, Kaidiliayi Sulidan, Yataro Daigo, Toru Hiraga, Kaoru Mogushi, Nadila Wali, Hiromu Suzuki, Takahiko Itoh, Yohei Miyagi, Tomoyuki Yokose, Satoru Shimizu, Atsushi Takano, Yasuhisa Terao, Harumi Saeki, Masayuki Ozawa, Masaaki Abe, Satoru Takeda, Ko Okumura, Sonoko Habu, Okio Hino, Kazuyoshi Takeda, Michiaki Hamada, Akira Orimo
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2015.00351

An Ultra-High Field Magnetic Resonance Spectroscopy Study of Post Exercise Lactate, Glutamate and Glutamine Change in the Human Brain
Cited by: 32
Author(s): Andrea Dennis, A. Thomas, Nancy B. Rawlings, Jamie Near, Thomas E. Nichols, Stuart Clare, Heidi Johansen‐Berg, Charlotte J. Stagg
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0190959

Soil microbial communities and enzyme activities in sea-buckthorn (Hippophae rhamnoides) plantation at different ages
Cited by: 29
Author(s): Miao Yang, Dan Yang, Xuan Yu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2021.687371

MAPK10 Expression as a Prognostic Marker of the Immunosuppressive Tumor Microenvironment in Human Hepatocellular Carcinoma
Cited by: 2
Author(s): Huahui Li, Yuting Li, Ying Zhang, Binbin Tan, Ting‐Ying Huang, Jixian Xiong, Xiangyu Tan, Maria A. Ermolaeva, Li Fu
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.00645

Protective Role of Decorin in Primary Hepatocellular Carcinoma
Cited by: 19
Author(s): Andrea Reszegi, Zsolt Horváth, Hajnalka Fehér, Barnabás Wichmann, Péter Tátrai, Ilona Kovalszky, Kornélia Baghy
Software Mentions: 2
Published: over 4 years ago

10.1186/1750-0680-7-10

A sample design for globally consistent biomass estimation using lidar data from the Geoscience Laser Altimeter System (GLAS)
Cited by: 24
Author(s): Sean P. Healey, Paul L. Patterson, Sassan Saatchi, M. A. Lefsky, Andrew J. Lister, Elizabeth A. Freeman
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0176368

Selection of suitable endogenous reference genes for qPCR in kidney and hypothalamus of rats under testosterone influence
Cited by: 28
Author(s): Khadijeh Gholami, Su Yi Loh, Naguib Salleh, Sau Kuen Lam, See-Ziau Hoe
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0246507

Biomarker-focused multi-drug combination therapy and repurposing trial in mdx mice
Cited by: 8
Author(s): Michael Ziemba, Molly Barkhouse, Kitipong Uaesoontrachoon, Mamta Giri, Yetrib Hathout, Utkarsh J. Dang, Heather Gordish‐Dressman, Kanneboyina Nagaraju, Eric P. Hoffman
Software Mentions: 2
Published: over 3 years ago

10.3389/fcimb.2021.692883

A Single Dose of Nitrate Increases Resilience Against Acidification Derived From Sugar Fermentation by the Oral Microbiome
Cited by: 11
Author(s): Bob T. Rosier, Carlos Palazón, Sandra García‐Esteban, Alejandro Artacho, Antonio Galiana, Álex Mira
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-12-205

A scan statistic to extract causal gene clusters from case-control genome-wide rare CNV data
Cited by: 6
Author(s): Takeshi Nishiyama, Kunihiko Takahashi, Toshiro Tango, Dalila Pinto, Stephen W. Scherer, Shinichi Takami, Hirohisa Kishino
Software Mentions: 2
Published: over 13 years ago

10.3389/fgene.2020.565749

Integrating Clinical and Genomic Analyses of Hippocampal-Prefrontal Circuit Disorder in Depression
Cited by: 4
Author(s): Naijun Yuan, Kairui Tang, Xiaoli Da, Hua Gan, Liangliang He, Xiaojuan Li, Qingyu Ma, Jiaxu Chen
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2020.597741

RNA Sequencing Keloid Transcriptome Associates Keloids With Th2, Th1, Th17/Th22, and JAK3-Skewing
Cited by: 43
Author(s): Jianni Wu, Ester Del Duca, Michael M. Espino, Alyssa Gontzes, Inna Cueto, Ning Zhang, Yeriel Estrada, Ana B. Pavel, James G. Krueger, Emma Guttman‐Yassky
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40249-018-0501-9

Data and tools to integrate climate and environmental information into public health
Cited by: 26
Author(s): Pietro Ceccato, Bernadette Ramirez, Tawanda Manyangadze, Paul Gwakisa, Madeleine C. Thomson
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0257376

Real-life use of tocilizumab with or without corticosteroid in hospitalized patients with moderate-to-severe COVID-19 pneumonia: A retrospective cohort study
Cited by: 6
Author(s): Gianluca Russo, Angelo G. Solimini, Paola Zuccalà, Maria Antonella Zingaropoli, Anna Carraro, Patrizia Pasculli, Valentina Perri, Raffaella Marocco, Blerta Kertusha, Cosmo Del Borgo, Emanuela Del Giudice, Laura Fondaco, Tiziana Tieghi, Claudia D’Agostino, Alessandra Oliva, Vincenzo Vullo, Maria Rosa Ciardi, Claudio Maria Mastroianni, Miriam Lichtner
Software Mentions: 2
Published: about 3 years ago

10.1093/brain/awz291

Mutations in PCYT2 disrupt etherlipid biosynthesis and cause a complex hereditary spastic paraplegia
Cited by: 73
Author(s): Frédéric M. Vaz, John H McDermott, Mariëlle Alders, Saskia B. Wortmann, Stefan Kölker, Mia L. Pras‐Raves, Martin A. T. Vervaart, Henk van Lenthe, Angela C. M. Luyf, Hyung L. Elfrink, Kay Metcalfe, Sara Cuvertino, Peter E. Clayton, Rebecca Yarwood, Martin Lowe, Simon C. Lovell, R. Curtis Rogers, Deciphering Developmental Disorders Study, Antoine H. C. van Kampen, J. P. N. Ruiter, Ronald J. A. Wanders, Sacha Ferdinandusse, Michel van Weeghel, Marc Engelen, Siddharth Banka
Software Mentions: 2
Published: about 5 years ago

10.1186/s12913-020-05999-5

Comparing Charlson and Elixhauser comorbidity indices with different weightings to predict in-hospital mortality: an analysis of national inpatient data
Cited by: 43
Author(s): Narayan Sharma, René Schwendimann, Olga Endrich, Dietmar Ausserhofer, Michaël Simon
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13068-015-0357-1

A photorespiratory bypass increases plant growth and seed yield in biofuel crop Camelina sativa
Cited by: 87
Author(s): Jyoti Dalal, Harry O. Lopez, Naresh Vasani, Zhaohui Hu, Jennifer Swift, Roopa Yalamanchili, Mia Dvora, Xiuli Lin, De‐Yu Xie, Rongda Qu, Heike Sederoff
Software Mentions: 2
Published: about 9 years ago

10.1186/s12302-018-0183-8

Modelling spatial patterns of correlations between concentrations of heavy metals in mosses and atmospheric deposition in 2010 across Europe
Cited by: 12
Author(s): Stefan Nickel, Winfried Schröder, Roman Schmalfuß, Maike Saathoff, Harry Harmens, Gina Mills, M. V. Frontasyeva, Lambe Barandovski, Oleg Blum, A. Carballeira, Ludwig De Temmerman, A.M. Dunaev, Antoaneta Ene, Hilde Fagerli, Barbara Godzik, Ilia Ilyin, Johannes Sander, Zvonka Jeran, Pranvera Lazo, Sébastien Leblond, Siiri Liiv, B. Maňkovská, Encarnación Núñez‐Olivera, Juha Piispanen, Jarmo Poikolainen, Iovitzu Popescu, Flora Qarri, Jesús Santamarı́a, Martijn Schaap, Mitja Skudnik, Zdravko Špirić, Trajče Stafilov, E. Steinnes, Claudia Stihi, Ivan Suchara, Hilde Thelle Uggerud, Harald G. Zechmeister
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0249993

Evolution of diversity and dominance of companies in online activity
Cited by: 1
Author(s): Paul X. McCarthy, Xiuqing Gong, Sina Eghbal, Daniel S. Falster, Marian-Andrei Rizoiu
Software Mentions: 2
Published: over 3 years ago

10.1186/s12874-016-0209-0

A computational approach to compare regression modelling strategies in prediction research
Cited by: 11
Author(s): Romin Pajouheshnia, Wiebe R. Pestman, Steven Teerenstra, Rolf H.H. Groenwold
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0239525

Wildlife resistance and protection in a changing New England landscape
Cited by: 4
Author(s): Schuyler Pearman-Gillman, Matthew J. Duveneck, James D. Murdoch, Therese M. Donovan
Software Mentions: 2
Published: about 4 years ago

10.1002/ece3.3515

The Saturniidae of Barro Colorado Island, Panama: A model taxon for studying the long-term effects of climate change?
Cited by: 19
Author(s): Yves Basset, Greg P. A. Lamarre, Tom Ratz, Simon T. Segar, Thibaud Decaëns, Rodolphe Rougerie, Scott E. Miller, Filonila Perez, Ricardo Bobadilla, Yacksecari Lopez, José Alejandro Ramirez, Annette Aiello, Héctor Barrios
Software Mentions: 2
Published: about 7 years ago

10.1016/j.dib.2019.104977

Modes of transport in the Northeast Corridor: Dataset
Cited by: 0
Author(s): Ignacio Escañuela Romana
Software Mentions: 2
Published: almost 5 years ago

10.3390/microorganisms8030421

Microbiota Alters Urinary Bladder Weight and Gene Expression
Cited by: 5
Author(s): Blanka Roje, Anamaria Elek, Vinko Palada, Joana Bom, Aida Iljazović, Ana Šimić, Lana Sušak, Katarina Vilović, Till Strowig, Kristian Vlahoviček, Janoš Terzić
Software Mentions: 2
Published: over 4 years ago

10.1155/2014/639751

A Comprehensive In Silico Analysis of the Functional and Structural Impact of Nonsynonymous SNPs in the ABCA1 Transporter Gene
Cited by: 12
Author(s): Francisco R. Marín-Martín, Cristina Soler‐Rivas, Roberto Martín‐Hernández, Arantxa Rodrı́guez-Casado
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0213777

Orienteering Problem with Functional Profits for multi-source dynamic path construction
Cited by: 5
Author(s): Ksenia D. Mukhina, Alexander A. Visheratin, Denis Nasonov
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-021-03630-x

HomeoboxC6 promotes metastasis by orchestrating the DKK1/Wnt/β-catenin axis in right-sided colon cancer
Cited by: 13
Author(s): Ling Qi, Jiani Chen, Biting Zhou, Kailun Xu, Kailai Wang, Zhihao Fang, Yingkuan Shao, Ying Yuan, Shu Zheng, Wangxiong Hu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41420-020-00294-y

Development and validation of prognostic index based on autophagy-related genes in patient with head and neck squamous cell carcinoma
Cited by: 16
Author(s): Hao Feng, Linna Zhong, Xiangjun Yang, Qianbing Wan, Xibo Pei, Jian Wang
Software Mentions: 2
Published: over 4 years ago

10.3390/diagnostics9040135

A Pervasive Healthcare System for COPD Patients
Cited by: 7
Author(s): Hicham Ajami, Hamid Mcheick, Karam Mustapha
Software Mentions: 2
Published: about 5 years ago

10.1002/2211-5463.13245

EvoProDom: evolutionary modeling of protein families by assessing translocations of protein domains
Cited by: 0
Author(s): Gon Carmi, Alessandro Gorohovski, Milana Frenkel‐Morgenstern
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0145192

Multiple Scales of Control on the Structure and Spatial Distribution of Woody Vegetation in African Savanna Watersheds
Cited by: 17
Author(s): Nicholas R. Vaughn, Gregory P. Asner, Izak P.J. Smit, Edward S. Riddel
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0197311

Looking behind the score: Skill structure explains sex differences in skilled video game performance
Cited by: 7
Author(s): Kyle W. Harwell, Walter R. Boot, K. Anders Ericsson
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0040936

Temporal Structure in Audiovisual Sensory Selection
Cited by: 34
Author(s): Anne Kösem, Virginie van Wassenhove
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-16-S5-S5

Memory acquisition and retrieval impact different epigenetic processes that regulate gene expression
Cited by: 44
Author(s): Lucı́a Peixoto, Mathieu E. Wimmer, Shane G. Poplawski, Jennifer C Tudor, Charles A. Kenworthy, Shichong Liu, Keiko Mizuno, Benjamin A. Garcia, Nancy R. Zhang, K. Peter Giese, Ted Abel
Software Mentions: 2
Published: over 9 years ago

Projects: pypi: language

Papers Mentioning language 427