Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: khmer
https://packages.ecosyste.ms/registries/pypi.org/packages/khmer
khmer k-mer counting library
17 versions
Latest release: about 1 year ago
1 dependent package
172 downloads last month
Papers Mentioning khmer 110
10.5334/jors.96
Channeling Community Contributions to Scientific Software: A Sprint ExperienceCited by: 4
Author(s): Michael R. Crusoe, C. Titus Brown
Software Mentions: 1
Published: about 8 years ago
10.1186/2041-9139-4-16
A quantitative reference transcriptome for Nematostella vectensis earlyembryonic development: a pipeline for de novo assembly in emergingmodel systemsCited by: 52
Author(s): Sarah Tulin, Derek Aguiar, Sorin Istrail, Joel Smith
Software Mentions: 1
Published: over 11 years ago
10.1186/s13227-018-0107-0
Developmental system drift in motor ganglion patterning between distantly related tunicatesCited by: 17
Author(s): Elijah K. Lowe, Alberto Stolfi
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2018.03195
Colistin Resistant A. baumannii: Genomic and Transcriptomic Traits Acquired Under Colistin TherapyCited by: 37
Author(s): Viviana Cafiso, Stefano Stracquadanio, Flavia Lo Verde, Giacoma Gabriele, Maria Lina Mezzatesta, Carla Caio, Giuseppe Pigola, Alfredo Ferro, Stefania Stefani
Software Mentions: 1
Published: over 5 years ago
10.1016/j.csbj.2015.06.001
Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiomeCited by: 167
Author(s): Shirley Bikel, Alejandra Valdez-Lara, Fernanda Cornejo‐Granados, Karina Rico, Samuel Cañizales-Quinteros, Xavier Soberón, Luis del Pozo‐Yauner, Adrián Ochoa-Leyva
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0166578
Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland SoilCited by: 15
Author(s): Adina Howe, Fan Yang, Ryan J. Williams, Folker Meyer, Kirsten Hofmockel
Software Mentions: 1
Published: almost 8 years ago
10.3390/toxins8050143
The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96TCited by: 18
Author(s): Mark R. H. Hurst, Amy Beattie, Eric Altermann, Roger M. Moraga, Lincoln A. Harper, Joanne Calder, Aurélie Laugraud
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2018.02602
Novel Self-Transmissible and Broad-Host-Range Plasmids Exogenously Captured From Anaerobic Granules or Cow ManureCited by: 17
Author(s): Kosuke Yanagiya, Yoshiaki Maejima, Hiroki Nakata, Maho Tokuda, Ryota Moriuchi, Hideo Dohra, Kengo Inoue, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0158221
Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)Cited by: 32
Author(s): Hilke Schroeder, Richard Cronn, Yulai Yanbaev, Tara Jennings, Malte Mäder, Бернд Деген, Birgit Kersten
Software Mentions: 1
Published: about 8 years ago
10.1186/1471-2458-11-83
Social and cultural dimensions of hygiene in Cambodian health care facilitiesCited by: 15
Author(s): Pascale Hancart Petitet, Céline Dumas, Anne-Laure Faurand-Tournaire, Alice Desclaux, Sirenda Vong
Software Mentions: 1
Published: over 13 years ago