Projects: pypi: igv_plotter
https://packages.ecosyste.ms/registries/pypi.org/packages/igv_plotter
python interface to IGV that simplifies creating screenshots of BAMs, VCFs, BEDs, etc for one-off spot checking or automated / scripted image collection
7 versions
Latest release: almost 3 years ago
18 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
MacArthur Lab (organization)
Extracting useful information from large genomic datasets Academic
Extracting useful information from large genomic datasets Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning igv_plotter 2
10.1093/molbev/msz159
De Novo Mutation Rate Estimation in Wolves of Known PedigreeCited by: 44
Author(s): Evan Koch, Rena M. Schweizer, Teia M. Schweizer, Daniel R. Stahler, Douglas W. Smith, Robert K. Wayne, John Novembre
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0174766
Codon-level co-occurrences of germline variants and somatic mutations in cancer are rare but often lead to incorrect variant annotation and underestimated impact predictionCited by: 4
Author(s): Amanda Koire, Young Won Kim, Jarey Wang, Panagiotis Katsonis, Haijing Jin, Olivier Lichtarge
Software Mentions: 1
Published: over 9 years ago