Ecosyste.ms: Papers

10.3390/cancers12010220

Combined Effects of Eicosapentaenoic Acid and Adipocyte Renin–Angiotensin System Inhibition on Breast Cancer Cell Inflammation and Migration
Cited by: 9
Author(s): Fahmida Rasha, Chanaka N. Kahathuduwa, Latha Ramalingam, Arelys Hernández, Hanna Moussa, Naïma Moustaïd-Moussa
Software Mentions: 1
Published: almost 5 years ago

10.3390/cancers12071853

Molecular Basis of Mismatch Repair Protein Deficiency in Tumors from Lynch Suspected Cases with Negative Germline Test Results
Cited by: 5
Author(s): Alisa Olkinuora, Annette Gylling, Henrikki Almusa, Samuli Eldfors, Anna Lepistö, Jukka–Pekka Mecklin∥, Taina T. Nieminen, Païvi Peltomäki
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers12123574

Metabolomics to Assess Response to Immune Checkpoint Inhibitors in Patients with Non-Small-Cell Lung Cancer
Cited by: 30
Author(s): Veronica Ghini, Letizia Laera, Beatrice Fantechi, Francesca Del Monte, Matteo Benelli, Amelia McCartney, Leonardo Tenori, Claudio Luchinat, Daniele Pozzessere
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.chembiol.2018.06.004

The MALDI-TOF E2/E3 Ligase Assay as Universal Tool for Drug Discovery in the Ubiquitin Pathway
Cited by: 54
Author(s): Virginia De Cesare, Clare Johnson, Victoria L. Barlow, C. James Hastie, Axel Knebel, Matthias Trost
Software Mentions: 1
Published: about 6 years ago

10.1038/cddis.2014.594

The transcriptional repressor HDAC7 promotes apoptosis and c-Myc downregulation in particular types of leukemia and lymphoma
Cited by: 38
Author(s): Bruna Barneda-Zahonero, Olga Collazo, Alba Azagra, Irene Fernández-Duran, Jordi Serra-Musach, Abul B.M.M.K. Islam, Nerea Vega-García, Roberta Malatesta, Mireia Camós, Antonio Gómez, Lidia Román-González, August Vidal, Núria López‐Bigas, Alberto Villanueva, Manel Esteller, Maribel Parra
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.celrep.2021.109649

FAN1 controls mismatch repair complex assembly via MLH1 retention to stabilize CAG repeat expansion in Huntington’s disease
Cited by: 22
Author(s): Robert Goold, Joseph Hamilton, Thomas Menneteau, Michael Flower, Emma L. Bunting, Sarah G. Aldous, Antônio Porro, José R. Vicente, Nicholas Denby Allen, Hilary A. Wilkinson, Gillian P. Bates, Alessandro A. Sartori, Konstantinos Thalassinos, Gabriel Balmus, Sarah J. Tabrizi
Software Mentions: 1
Published: over 3 years ago

10.3390/cells9091939

Modulation of Human Adipose Stem Cells’ Neurotrophic Capacity Using a Variety of Growth Factors for Neural Tissue Engineering Applications: Axonal Growth, Transcriptional, and Phosphoproteomic Analyses In Vitro
Cited by: 9
Author(s): Katharina M Prautsch, Alexander Schmidt, Viola Paradiso, Dirk J. Schaefer, Raphaël Guzman, Daniel F. Kalbermatten, Srinivas Madduri
Software Mentions: 1
Published: over 4 years ago

10.1039/d1sc01430g

<i>Ortho</i>-aryl substituted DPEphos ligands: rhodium complexes featuring C–H anagostic interactions and B–H agostic bonds
Cited by: 5
Author(s): James J. Race, Arron L. Burnage, Timothy M. Boyd, Alex Heyam, Antonio J. Martínez‐Martínez, Stuart A. Macgregor, Andrew S. Weller
Software Mentions: 1
Published: almost 4 years ago

10.1186/1559-0275-9-10

Investigation of ovarian cancer associated sialylation changes in N-linked glycopeptides by quantitative proteomics
Cited by: 24
Author(s): Vivekananda Shetty, Julie Hafner, Punit Shah, Zacharie Nickens, Ramila Philip
Software Mentions: 1
Published: over 12 years ago

10.1186/s12014-019-9225-5

Proteomic analysis of plasma exosomes to differentiate malignant from benign pulmonary nodules
Cited by: 15
Author(s): Muyu Kuang, Xiaoting Tao, Yizhou Peng, Wenjing Zhang, Yafang Pan, Lei Cheng, Chongze Yuan, Yue Zhao, Hengyu Mao, Lingdun Zhuge, Zhenhua Zhou, Haiquan Chen, Yihua Sun
Software Mentions: 1
Published: almost 6 years ago

10.1186/1559-0275-11-28

Critical comparison of sample preparation strategies for shotgun proteomic analysis of formalin-fixed, paraffin-embedded samples: insights from liver tissue
Cited by: 47
Author(s): Alessandro Tanca, Marcello Abbondio, Salvatore Pisanu, Daniela Pagnozzi, Sergio Uzzau, Maria Filippa Addis
Software Mentions: 1
Published: over 10 years ago

10.1186/s13569-020-0126-1

Accurate 3-gene-signature for early diagnosis of liposarcoma progression
Cited by: 4
Author(s): Anastassia Serguienko, Peder R. Braadland, Leonardo A. Meza‐Zepeda, Bodil Bjerkehagen, Ola Myklebost
Software Mentions: 1
Published: over 4 years ago

10.1101/mcs.a001602

Identification of a novel RASD1 somatic mutation in a USP8-mutated corticotroph adenoma
Cited by: 8
Author(s): Andrew Uzilov, Khadeen Cheesman, Marc Y. Fink, Leah Newman, Chetanya Pandya, Yelena Lalazar, Marco M. Hefti, Mary Fowkes, Gintaras Deikus, Chun Yee Lau, Aye S. Moe, Yayoi Kinoshita, Yumi Kasai, Micol Zweig, Arpeta Gupta, Daniela Starcevic, Milind Mahajan, Eric E. Schadt, Kalmon D. Post, Michael Donovan, Robert Sebra, Rong Chen, Eliza B. Geer
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-020-0871-y

The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2
Cited by: 14
Author(s): Cyril Legrand, Roberto Saleppico, Jana Sticht, Fabio Lolicato, Hans‐Michael Müller, Sabine Wegehingel, Eleni Dimou, Julia P. Steringer, Helge Ewers, Ilpo Vattulainen, Christian Freund, Walter Nickel
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-019-0681-2

Origin of conformational dynamics in a globular protein
Cited by: 9
Author(s): Adam M. Damry, Marc M. Mayer, Aron Broom, Natalie K. Goto, Roberto A. Chica
Software Mentions: 1
Published: almost 5 years ago

10.1038/s42003-021-02435-0

Lead exposure is associated with functional and microstructural changes in the healthy human brain
Cited by: 12
Author(s): Hikaru Takeuchi, Yasuyuki Taki, Rui Nouchi, Ryoichi Yokoyama, Yuka Kotozaki, Seishu Nakagawa, Atsushi Sekiguchi, Kunio Iizuka, Sugiko Hanawa, Tsuyoshi Araki, Carlos Makoto Miyauchi, Kohei Sakaki, Takayuki Nozawa, Shigeyuki Ikeda, Susum Yokota, Daniele Magistro, Yuko Sassa, Ryuta Kawashima
Software Mentions: 1
Published: over 3 years ago

10.1155/2015/265497

Methodology for Registration of Shrinkage Tumors in Head-and-Neck CT Studies
Cited by: 0
Author(s): Jianhua Wang, Jianrong Dai, Yongjie Jing, Yanyan Huo, Tianye Niu
Software Mentions: 1
Published: almost 10 years ago

10.1155/2013/381356

Segmentation and Morphometric Analysis of Cells from Fluorescence Microscopy Images of Cytoskeletons
Cited by: 10
Author(s): Yoshihiro Ujihara, Masanori Nakamura, Hiroshi Miyazaki, Shigeo Wada
Software Mentions: 1
Published: almost 12 years ago

10.1093/database/bau047

'RetinoGenetics': a comprehensive mutation database for genes related to inherited retinal degeneration
Cited by: 40
Author(s): Xia Ran, Wei-Jun Cai, Xiu‐Feng Huang, Qi Liu, Fan Liu, Jia Qu, Jinyu Wu, Zi‐Bing Jin
Software Mentions: 1
Published: over 10 years ago

10.1093/database/baw060

PmiRExAt: plant miRNA expression atlas database and web applications
Cited by: 33
Author(s): Anoop Kishor Singh Gurjar, Abhijeet Singh Panwar, Rajinder K. Gupta, Shrikant Mantri
Software Mentions: 1
Published: almost 9 years ago

10.1093/database/bay078

PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants
Cited by: 20
Author(s): Daniel Longhi Fernandes Pedro, Alan Péricles Rodrigues Lorenzetti, Douglas Silva Domingues, Alexandre Rossi Paschoal
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40658-020-00330-x

Assessment of population-based input functions for Patlak imaging of whole body dynamic 18F-FDG PET
Cited by: 32
Author(s): Mika Naganawa, Jean‐Dominique Gallezot, Vijay Shah, Tim Mulnix, Colin R. Young, Mark Dias, Ming-Kai Chen, Allan M. Smith, Richard E. Carson
Software Mentions: 1
Published: about 4 years ago

10.1186/s40658-018-0234-7

Predictive power of the post-treatment scans after the initial or first two courses of [177Lu]-DOTA-TATE
Cited by: 11
Author(s): Alexandre Chicheportiche, Simona Grozinsky‐Glasberg, David J. Gross, Yodphat Krausz, Asher Salmon, Amichay Meirovitz, Nanette Freedman, Jeremy Godefroy
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13550-020-00675-5

Quantitative comparison of pre-treatment predictive and post-treatment measured dosimetry for selective internal radiation therapy using cone-beam CT for tumor and liver perfusion territory definition
Cited by: 6
Author(s): Esmaeel Jafargholi Rangraz, Xikai Tang, Charlotte Van Laeken, Geert Maleux, Jeroen Dekervel, Éric Van Cutsem, Chris Verslype, Kristof Baete, Johan Nuyts, Christophe M. Deroose
Software Mentions: 1
Published: over 4 years ago

10.15252/embj.2018100727

Let‐7a‐regulated translational readthrough of mammalian <i> <scp>AGO</scp> 1 </i> generates a micro <scp>RNA</scp> pathway inhibitor
Cited by: 25
Author(s): Anumeha Singh, Lekha E Manjunath, Pradipta Kundu, Sarthak Sahoo, Arijit Das, Harikumar R Suma, Paul L. Fox, Sandeep M Eswarappa
Software Mentions: 1
Published: over 5 years ago

10.15252/emmm.201910769

Activation of <scp>LXR</scp> β inhibits tumor respiration and is synthetically lethal with Bcl‐ <scp>xL</scp> inhibition
Cited by: 27
Author(s): Trang Nguyen, Chiaki Tsuge Ishida, Enyuan Shang, Chang Shu, Consuelo Torrini, Yiru Zhang, Elena Bianchetti, Maria J. Sanchez-Quintero, Giulio Kleiner, Catarina M. Quinzii, Mike‐Andrew Westhoff, Georg Karpel‐Massler, Peter Canoll, Markus D. Siegelin
Software Mentions: 1
Published: about 5 years ago

10.15252/embr.201948460

PHF6 promotes non‐homologous end joining and G2 checkpoint recovery
Cited by: 19
Author(s): Daniël O. Warmerdam, Ignacio Alonso-de Vega, Wouter W. Wiegant, Bram van den Broek, Magdalena B. Rother, Rob M. F. Wolthuis, Raimundo Freire, Haico van Attikum, René H. Medema, Veronique A. J. Smits
Software Mentions: 1
Published: almost 5 years ago

10.1002/ece3.1909

Genomic population structure of freshwater‐resident and anadromous ide (<i>Leuciscus idus</i>) in north‐western Europe
Cited by: 18
Author(s): Mikkel Skovrind, Morten Tange Olsen, Filipe Garrett Vieira, George Pacheco, Henrik Carl, M. Thomas P. Gilbert, Peter Rask Møller
Software Mentions: 1
Published: almost 9 years ago

10.1002/ece3.2072

Genomic signatures of the plateless phenotype in the threespine stickleback
Cited by: 4
Author(s): Anna B. Mazzarella, Sanne Boessenkool, Kjartan Østbye, Leif Asbjørn Vøllestad, Emiliano Trucchi
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.7507

Genome‐wide analysis of European sea bass provides insights into the evolution and functions of single‐exon genes
Cited by: 1
Author(s): Mbaye Tine, Heiner Kuhl, Peter R. Teske, Richard Reinhardt
Software Mentions: 1
Published: over 3 years ago

10.3390/e21070661

Variability and Reproducibility of Directed and Undirected Functional MRI Connectomes in the Human Brain
Cited by: 13
Author(s): Allegra Conti, Andrea Duggento, Maria Guerrisi, Luca Passamonti, Iole Indovina, Nicola Toschi
Software Mentions: 1
Published: over 5 years ago

10.1007/s11356-021-12503-x

Oxylipins at intermediate larval stages of damselfly Coenagrion hastulatum as biochemical biomarkers for anthropogenic pollution
Cited by: 4
Author(s): Jana Späth, Tomas Brodin, Daniel Červený, Richard H. Lindberg, Jerker Fick, Malin L. Nording
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13072-017-0125-5

Links between DNA methylation and nucleosome occupancy in the human genome
Cited by: 51
Author(s): Clayton K. Collings, J.C. Anderson
Software Mentions: 1
Published: over 7 years ago

10.1007/s10096-018-3321-8

Comparative phase I randomized open-label pilot clinical trial of Gynophilus® (Lcr regenerans®) immediate release capsules versus slow release muco-adhesive tablets
Cited by: 16
Author(s): Caroline Dausset, Stéphane Patrier, Pawel Gajer, Claudia Thoral, Y. Lenglet, Jean‐Michel Cardot, P Judlin, Jacques Ravel, Adrien Nivoliez
Software Mentions: 1
Published: over 6 years ago

10.1002/fsn3.2537

Transcriptome analysis of messenger RNA and long noncoding RNA related to different developmental stages of tail adipose tissues of sunite sheep
Cited by: 6
Author(s): Xige He, Rihan Wu, Yueying Yun, Xia Qin, Ciyong Lu, Yunfei Han, Jindi Wu, Sha Li, Gerelt Borjigin
Software Mentions: 1
Published: about 3 years ago

10.1002/fsn3.2157

The effects of pH and NaCl concentration on the structure of β‐casein from buffalo milk
Cited by: 3
Author(s): Kong Wu, Tao Yang, Quan Yang Li
Software Mentions: 1
Published: over 3 years ago

10.3390/foods10040786

Gastric Digestion of Milk Proteins in Adult and Elderly: Effect of High-Pressure Processing
Cited by: 12
Author(s): Kataneh Aalaei, Bekzod Khakimov, Cristian De Gobba, Lı́lı́a Ahrné
Software Mentions: 1
Published: over 3 years ago

10.1080/20961790.2018.1446672

Sequencing of 231 forensic genetic markers using the MiSeq FGx™ forensic genomics system – an evaluation of the assay and software
Cited by: 36
Author(s): Christian Hussing, Christina Huber, Rajmonda Bytyci, Helle Smidt Mogensen, Niels Morling, Claus Børsting
Software Mentions: 1
Published: over 6 years ago

10.3389/fnagi.2013.00100

Brain-wide slowing of spontaneous alpha rhythms in mild cognitive impairment
Cited by: 70
Author(s): Pilar Garcés, Raúl Vicente, Michael Wibral, José A. Pineda-Pardo, María Eugenia López, Sara Aurtenetxe, Alberto Marcos, Maria Emiliana de Andrés, Miguel Yus, M. Sancho, Fernando Maestú, Alberto Fernández
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnbeh.2014.00404

Functional connectivity density alterations in schizophrenia
Cited by: 65
Author(s): Chuanjun Zhuo, Jiajia Zhu, Wen Qin, Hongru Qu, Xiaolei Ma, Hongjun Tian, Qingying Xu, Chunshui Yu
Software Mentions: 1
Published: about 10 years ago

10.3389/fnbeh.2021.604207

Functional Connectivity Derived From Electroencephalogram in Pharmacoresistant Epileptic Encephalopathy Using Cannabidiol as Adjunctive Antiepileptic Therapy
Cited by: 4
Author(s): Lilia María Morales Chacón, Lidice Galán García, Sheyla Berrillo Batista, Judith González González, Abel Sánchez Coroneaux
Software Mentions: 1
Published: over 3 years ago

10.3389/fbioe.2021.701876

20-Hydroxy-3-Oxolupan-28-Oic Acid, a Minor Component From Mahonia bealei (Fort.) Carr. Leaves Alleviates Lipopolysaccharide-Induced Inflammatory in Murine Macrophages
Cited by: 0
Author(s): Xiaojun Yang, Jing Zhou, Yang He, Lingyun Lv, Yufeng Cao, Weicheng Hu
Software Mentions: 1
Published: over 3 years ago

10.3389/fcimb.2017.00456

E. fischeriana Root Compound Dpo Activates Antiviral Innate Immunity
Cited by: 6
Author(s): Jingxuan Chen, Hongqiang Du, Shuang Cui, Tong Liu, Guang Yang, Hongzhi Sun, Weiwei Tao, Baoping Jiang, Li Yu, Fangtian You
Software Mentions: 1
Published: about 7 years ago

10.3389/fcimb.2016.00165

Clinical and Genomic Analysis of Liver Abscess-Causing Klebsiella pneumoniae Identifies New Liver Abscess-Associated Virulence Genes
Cited by: 67
Author(s): Meiping Ye, Jianfei Tu, Jianping Jiang, Yingwen Bi, Weibo You, Yanliang Zhang, Jianmin Ren, Taohui Zhu, Zhuo Cao, Zuochun Yu, Chuxiao Shao, Zhen Shen, Baixing Ding, Jinyi Yuan, Zu-De Xu, Qinglan Guo, Xiaogang Xu, Jinmei Huang, Minggui Wang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcimb.2019.00130

Integrative Analyses of Long Non-coding RNA and mRNA Involved in Piglet Ileum Immune Response to Clostridium perfringens Type C Infection
Cited by: 28
Author(s): Xiaoyu Huang, Weibo Sun, Zunqiang Yan, Hairen Shi, Qiaoli Yang, Pengfei Wang, Shenggui Li, Lixia Liu, Shengguo Zhao, Shuangbao Gun
Software Mentions: 1
Published: over 5 years ago

10.3389/fchem.2021.705931

Molecular Dynamics Simulations Reveal Interactions of an IgG1 Antibody With Selected Fc Receptors
Cited by: 4
Author(s): Sebastjan Kralj, Milan Hodošček, Barbara Podobnik, Tanja Kunej, Urban Bren, Dušanka Janežič, Janez Konc
Software Mentions: 1
Published: over 3 years ago

10.3389/fncom.2016.00021

Random Forest Segregation of Drug Responses May Define Regions of Biological Significance
Cited by: 3
Author(s): Qasim Bukhari, David Borsook, Markus Rudin, Lino Becerra
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2019.00092

The Effect of Dopamine Antagonist Treatment on Auditory Verbal Hallucinations in Healthy Individuals Is Clearly Influenced by COMT Genotype and Accompanied by Corresponding Brain Structural and Functional Alterations: An Artificially Controlled Pilot Study
Cited by: 7
Author(s): Chuanjun Zhuo, Yong Xu, Li Zhang, Rixing Jing, Chunhua Zhou
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00849

“EviMass”: A Literature Evidence-Based Miner for Human Microbial Associations
Cited by: 5
Author(s): Divyanshu Srivastava, Krishanu Das Baksi, Bhusan K. Kuntal, Sharmila S. Mande
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2021.685285

Genomic Insights Into the Admixture History of Mongolic- and Tungusic-Speaking Populations From Southwestern East Asia
Cited by: 20
Author(s): Jing Chen, Guanglin He, Zheng Ren, Qiyan Wang, Yubo Liu, Hongling Zhang, Meiqing Yang, Han Zhang, Jingyan Ji, Jing Hua Zhao, Jianxin Guo, Kongyang Zhu, Xiaomin Yang, Rui Wang, Hongxia Ma, Chuan‐Chao Wang, Jiang Huang
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2021.593725

Pinpointing the PRDM9-PRDM7 Gene Duplication Event During Primate Divergence
Cited by: 0
Author(s): Sacha Heerschop, Zahra Fagrouch, Ernst J. Verschoor, Hans Zischler
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.00356

Post-translational Modification Crosstalk and Hotspots in Sirtuin Interactors Implicated in Cardiovascular Diseases
Cited by: 23
Author(s): Suruchi Aggarwal, Sanjay K. Banerjee, Narayan Chandra Talukdar, Amit Kumar Yadav
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2020.00072

Integrating Peak Colocalization and Motif Enrichment Analysis for the Discovery of Genome-Wide Regulatory Modules and Transcription Factor Recruitment Rules
Cited by: 5
Author(s): Mirko Ronzio, Federico Zambelli, Diletta Dolfini, Roberto Mantovani, Giulio Pavesi
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2018.00737

Detection of Selection Signatures Among Brazilian, Sri Lankan, and Egyptian Chicken Populations Under Different Environmental Conditions
Cited by: 37
Author(s): Muhammed Walugembe, Francesca Bertolini, C.M.B. Dematawewa, Matheus de Paula Reis, Ahmed R. Elbeltagy, Carl J. Schmidt, Susan J. Lamont, Max F. Rothschild
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnhum.2019.00033

Brain Oscillatory Correlates of Visual Short-Term Memory Errors
Cited by: 11
Author(s): Igor Mapelli, Tolga Esat Özkurt
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnhum.2013.00158

Overlapping multivoxel patterns for two levels of visual expectation
Cited by: 14
Author(s): Vincent de Gardelle, Mark G. Stokes, Vanessa M. Johnen, Valentin Wyart, Christopher Summerfield
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2015.01510

Novel Barite Chimneys at the Loki's Castle Vent Field Shed Light on Key Factors Shaping Microbial Communities and Functions in Hydrothermal Systems
Cited by: 23
Author(s): Ida Helene Steen, Helge K. Dahle, Runar Stokke, Irene Roalkvam, Frida-Lise Daae, Hans Tore Rapp, Rolf B. Pedersen, Ingunn H. Thorseth
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2020.590451

NSs, the Silencing Suppressor of Tomato Spotted Wilt Orthotospovirus, Interferes With JA-Regulated Host Terpenoids Expression to Attract Frankliniella occidentalis
Cited by: 5
Author(s): Jianxiu Du, Xiaoyu Song, Xiaolu Shi, Xin Tang, Jianbin Chen, Zhanhong Zhang, Gong Chen, Zhuo Zhang, Xuguo Zhou, Yong Liu, Deyong Zhang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.01970

Revealing the Virulence Potential of Clinical and Environmental Aspergillus fumigatus Isolates Using Whole-Genome Sequencing
Cited by: 17
Author(s): Fabiola Puértolas-Balint, John W. A. Rossen, Claudy Oliveira dos Santos, Monika A. Chlebowicz, Erwin Raangs, M.L. van Putten, Pedro J. Sola‐Campoy, Li Han, Martina Schmidt, Silvia García-Cobos
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.00165

A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique
Cited by: 43
Author(s): Guoqiang Yao, Jie Yu, Qiangchuan Hou, Wenyan Hui, Li Chen, Lai‐Yu Kwok, Bilige Menghe, Tingting Sun, Heping Zhang, Wenyi Zhang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2016.01735

Overlapping Regions in HIV-1 Genome Act as Potential Sites for Host–Virus Interaction
Cited by: 2
Author(s): Deeya Saha, Soumita Podder, Tapash Chandra Ghosh
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2014.00140

Population and genomic analysis of the genus Halorubrum
Cited by: 41
Author(s): Matthew S. Fullmer, Shannon M. Soucy, Kristen S. Swithers, Andrea M. Makkay, Ryan Wheeler, António Ventosa, J. Peter Gogarten, R. Thane Papke
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2017.02324

A Polyphasic Approach for Phenotypic and Genetic Characterization of the Fastidious Aquatic Pathogen Francisella noatunensis subsp. orientalis
Cited by: 17
Author(s): José Gustavo Ramírez‐Paredes, Kim D. Thompson, Matthijs Metselaar, Khalid Shahin, Esteban Soto, R. H. Richards, David J. Penman, Duncan J. Colquhoun, Alexandra Adams
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.01094

Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in Corals
Cited by: 28
Author(s): Shan‐Hua Yang, Chwan-Lu Tseng, Chang‐Rung Huang, Chung‐Pin Chen, Kshitij Tandon, Sonny T. M. Lee, Pei‐Wen Chiang, Jia-Ho Shiu, Chaolun A. Chen, Sen‐Lin Tang
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2015.01278

Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins
Cited by: 95
Author(s): Clément Pellegrin, Emmanuelle Morin, Francis Martin, Claire Veneault‐Fourrey
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2019.02778

Dispersal of Mycobacterium tuberculosis Driven by Historical European Trade in the South Pacific
Cited by: 22
Author(s): Claire V. Mulholland, Abigail C. Shockey, Htin Aung, Raymond T. Cursons, Ronan O’Toole, Sanjay S. Gautam, Daniela Brites, Sébastien Gagneux, Sally Roberts, Noel Karalus, Gregory M. Cook, Caitlin S. Pepperell, Vickery L. Arcus
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2019.00362

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept
Cited by: 38
Author(s): Bert Bogaerts, Raf Winand, Qiang Fu, Julien Van Braekel, Pieter‐Jan Ceyssens, Wesley Mattheus, Sophie Bertrand, Sigrid C. J. De Keersmaecker, Nancy Roosens, Kevin Vanneste
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.610497

Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time as a Function of Secretome Composition
Cited by: 14
Author(s): Carolyn A. Zeiner, Samuel O. Purvine, Erika Zink, Si Wu, Ljiljana Paša‐Tolić, Dominique L. Chaput, Cara M. Santelli, Colleen M. Hansel
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmolb.2020.00004

Molecular Dynamics Simulations of a Chimeric Androgen Receptor Protein (SPARKI) Confirm the Importance of the Dimerization Domain on DNA Binding Specificity
Cited by: 7
Author(s): Mahdi Bagherpoor Helabad, Senta Volkenandt, Petra Imhof
Software Mentions: 1
Published: almost 5 years ago

10.3389/fncir.2015.00016

Individual variability in the anatomical distribution of nodes participating in rich club structural networks
Cited by: 11
Author(s): Madison Kocher, Ezequiel Gleichgerrcht, Travis Nesland, Chris Rorden, Julius Fridriksson, Maria Vittoria Spampinato, Leonardo Bonilha
Software Mentions: 1
Published: over 9 years ago

10.3389/fnana.2017.00020

Striatal Cholinergic Interneurons Modulate Spike-Timing in Striosomes and Matrix by an Amphetamine-Sensitive Mechanism
Cited by: 25
Author(s): Jill R. Crittenden, Carolyn J. Lacey, Feng‐Ju Weng, Catherine E. Garrison, Daniel J. Gibson, Yingxi Lin, Ann M. Graybiel
Software Mentions: 1
Published: over 7 years ago

10.3389/fneur.2017.00529

Altered Insular and Occipital Responses to Simulated Vertical Self-Motion in Patients with Persistent Postural-Perceptual Dizziness
Cited by: 65
Author(s): Roberta Riccelli, Luca Passamonti, Nicola Toschi, S. Ló Nigro, Giuseppe Chiarella, Claudio Petrolo, Francesco Lacquaniti, Jeffrey P. Staab, Iole Indovina
Software Mentions: 1
Published: about 7 years ago

10.3389/fneur.2018.00788

Differentiation of Brain Metastases and Gliomas Based on Color Map of Phase Difference Enhanced Imaging
Cited by: 6
Author(s): Satoshi Doishita, Shinichi Sakamoto, Tetsuya Yoneda, Takehiro Uda, Taro Tsukamoto, Eiji Yamada, Masami Yoneyama, Daisuke Kimura, Yutaka Katayama, Hiroyuki Tatekawa, Taro Shimono, Kenji Ohata, Yukio Miki
Software Mentions: 1
Published: about 6 years ago

10.3389/fneur.2019.01134

Primary Open Angle Glaucoma Is Associated With Functional Brain Network Reorganization
Cited by: 22
Author(s): Silvia Minosse, Francesco Garaci, Alessio Martucci, Simona Lanzafame, Francesca Di Giuliano, Eliseo Picchi, Massimo Cesareo, Raffaele Mancino, Maria Guerrisi, Chiara Adriana Pistolese, Roberto Floris, Carlo Alberto Nucci, Nicola Toschi
Software Mentions: 1
Published: about 5 years ago

10.3389/fneur.2015.00070

Is CT-Based Perfusion and Collateral Imaging Sensitive to Time Since Stroke Onset?
Cited by: 9
Author(s): Smriti Agarwal, Tomasz Matys, S. Tulasi Marrapu, Daniel Scoffings, Jennifer E. Mitchell, P. Simon Jones, Jean‐Claude Baron, Elizabeth A. Warburton
Software Mentions: 1
Published: over 9 years ago

10.3389/fnins.2019.00449

Co-treatment With BGP-15 Exacerbates 5-Fluorouracil-Induced Gastrointestinal Dysfunction
Cited by: 5
Author(s): Rachel M. McQuade, Maryam Al Thaalibi, Aaron C. Petersen, Raquel Abalo, Joel C. Bornstein, Emma Rybalka, Kulmira Nurgali
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.643375

Mutated DNA Damage Repair Pathways Are Prognostic and Chemosensitivity Markers for Resected Colorectal Cancer Liver Metastases
Cited by: 2
Author(s): Kun Wang, Ming Liu, Hongwei Wang, Kemin Jin, Xieqiao Yan, Quan Bao, Da Xu, Lijun Wang, Wei Liu, Yanyan Wang, Juan Li, Lijuan Liu, Xiaoyu Zhang, Chunhe Yang, Ge Jin, Baocai Xing
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2021.669227

Inhibition of the Proliferation of Human Lung Fibroblasts by Prostacyclin Receptor Agonists is Linked to a Sustained cAMP Signal in the Nucleus
Cited by: 15
Author(s): Maxine J. Roberts, Lauren T. May, Alastair C. Keen, Bonan Liu, Terrance Lam, Steven J. Charlton, Elizabeth M. Rosethorne, Michelle L. Halls
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2018.01284

Notch1 Inhibits Rosiglitazone-Induced Adipogenic Differentiation in Primary Thymic Stromal Cells
Cited by: 8
Author(s): Yajun Wang, Jianxin Tan, Hongmei Du, Xue Liu, Siliang Wang, Simeng Wu, Zhe Yuan, Xike Zhu
Software Mentions: 1
Published: about 6 years ago

10.3389/fphy.2016.00014

Small Worldness in Dense and Weighted Connectomes
Cited by: 10
Author(s): Luis M. Colon-Perez, Michelle Couret, William Triplett, Catherine C. Price, Thomas H. Mareci
Software Mentions: 1
Published: over 8 years ago

10.3389/fphys.2020.00265

Transmural Remodeling of Cardiac Microstructure in Aged Spontaneously Hypertensive Rats by Diffusion Tensor MRI
Cited by: 2
Author(s): Archontis Giannakidis, Grant T. Gullberg
Software Mentions: 1
Published: over 4 years ago

10.3389/fphys.2020.00720

Identification and Expression Profiling of Chemosensory Genes in Hermetia illucens via a Transcriptomic Analysis
Cited by: 9
Author(s): Qiang Xu, Zhongzhen Wu, Xinnian Zeng, Xiuli An
Software Mentions: 1
Published: over 4 years ago

10.3389/fphys.2021.645157

Investigating the Association of Wallerian Degeneration and Diaschisis After Ischemic Stroke With BOLD Cerebrovascular Reactivity
Cited by: 4
Author(s): Christiaan Hendrik Bas van Niftrik, Martina Sebök, Giovanni Muscas, Susanne Wegener, Andreas R. Luft, Christoph Stippich, Luca Regli, Jorn Fierstra
Software Mentions: 1
Published: over 3 years ago

10.3389/fphys.2020.00009

Identification and Comparative Analysis of Venom Proteins in a Pupal Ectoparasitoid, Pachycrepoideus vindemmiae
Cited by: 18
Author(s): Lei Yang, Yi Yang, Mingming Liu, Zhichao Yan, Liming Qiu, Qi Fang, Fang Wang, John H. Werren, Gōngyín Yè
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphys.2017.00391

Irinotecan-Induced Gastrointestinal Dysfunction Is Associated with Enteric Neuropathy, but Increased Numbers of Cholinergic Myenteric Neurons
Cited by: 19
Author(s): Rachel M. McQuade, Vanesa Stojanovska, Elizabeth Donald, Ahmed Ehsanur Rahman, Dean G Campelj, Raquel Abalo, Emma Rybalka, Joel C. Bornstein, Kulmira Nurgali
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2018.00006

Method for the Identification of Taxon-Specific k-mers from Chloroplast Genome: A Case Study on Tomato Plant (Solanum lycopersicum)
Cited by: 14
Author(s): Kairi Raime, Maido Remm
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2021.693690

Melatonin Improves Cotton Salt Tolerance by Regulating ROS Scavenging System and Ca2 + Signal Transduction
Cited by: 39
Author(s): Yuexin Zhang, Yapeng Fan, Cun Rui, Hong Zhang, Nan Xu, Dai Mei, Xiugui Chen, Xuke Lu, Delong Wang, Junjuan Wang, Jing Wang, Qinqin Wang, Shuai Wang, Chao Chen, Lixue Guo, Lingxia Zhao, Wuwei Ye
Software Mentions: 1
Published: over 3 years ago

10.3389/fpsyt.2019.00252

Thalamocortical Hyperconnectivity and Amygdala-Cortical Hypoconnectivity in Male Patients With Autism Spectrum Disorder
Cited by: 35
Author(s): Tetsuya Iidaka, Tomohiro Kogata, Yoko Mano, Hidetsugu Komeda
Software Mentions: 1
Published: over 5 years ago

10.3389/fpsyg.2013.00537

People can understand descriptions of motion without activating visual motion brain regions
Cited by: 8
Author(s): Swethasri Dravida, Rebecca Saxe, Marina Bedny
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnsys.2019.00065

Global vs. Network-Specific Regulations as the Source of Intrinsic Coactivations in Resting-State Networks
Cited by: 9
Author(s): Shonan Amemiya, Hidemasa Takao, Osamu Abe
Software Mentions: 1
Published: about 5 years ago

10.3389/fvets.2020.00645

Detection and Genetic Characterization of Viruses Present in Free-Ranging Snow Leopards Using Next-Generation Sequencing
Cited by: 8
Author(s): Örjan Johansson, Karin Ullman, Purevjav Lkhagvajav, Marc Wiseman, Jonas Malmsten, Mikael Leijon
Software Mentions: 1
Published: about 4 years ago

10.1534/g3.113.006890

A Whole-Genome DNA Marker Map for Cotton Based on the D-Genome Sequence of <i>Gossypium raimondii</i> L.
Cited by: 30
Author(s): Zining Wang, Dong Zhang, Xiyin Wang, Xu Tan, Hui Guo, Andrew H. Paterson
Software Mentions: 1
Published: about 11 years ago

10.3390/genes8020050

Sibling sRNA RyfA1 Influences Shigella dysenteriae Pathogenesis
Cited by: 10
Author(s): Megan E. Fris, William H. Broach, Sarah E. Klim, Peter W. Coschigano, Ronan O’Carroll, Clayton C. Caswell, Erin R. Murphy
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes10070507

Comparative Transcriptomic Analysis of the Larval and Adult Stages of Taenia pisiformis
Cited by: 14
Author(s): Shaohua Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/genes11050566

Characterizing Y-STRs in the Evaluation of Population Differentiation Using the Mean of Allele Frequency Difference between Populations
Cited by: 2
Author(s): Yuxiang Zhou, Jinliang Li, Baonian Liu, Qinrui Yang, Zhihan Zhou, Chengchen Shao, Shilin Li, Qiqun Tang, Jianhui Xie
Software Mentions: 1
Published: over 4 years ago

10.3390/genes12071021

Signatures of Selection and Genomic Diversity of Muskellunge (Esox masquinongy) from Two Populations in North America
Cited by: 0
Author(s): Josué Chinchilla-Vargas, Jonathan R. Meerbeek, Max F. Rothschild, Francesca Bertolini
Software Mentions: 1
Published: over 3 years ago

10.3390/genes12091294

Biallelic SYNE2 Missense Mutations Leading to Nesprin-2 Giant Hypo-Expression Are Associated with Intellectual Disability and Autism
Cited by: 4
Author(s): Natalie Young, Maria Asif, Matthew P. Jackson, Daniel Martı́n Fernández-Mayoralas, Mar Jiménez de la Peña, Beatriz Calleja‐Pérez, Sara Álvarez, Eve Hunter-Featherstone, Angelika A. Noegel, Wolfgang Höhne, Peter Nürnberg, Bogusław Obara, Muhammad Sajid Hussain, Iakowos Karakesisoglou, Alberto Fernández-Jaén
Software Mentions: 1
Published: over 3 years ago

10.1590/1678-4685-GMB-2019-0410

Integrated analysis of label-free quantitative proteomics and bioinformatics reveal insights into signaling pathways in male breast cancer
Cited by: 0
Author(s): Talita Helen Bombardelli Gomig, Amanda Moletta Gontarski, Iglenir João Cavalli, Ricardo Lehtonen Rodrigues de Souza, Aline Castro Rodrigues Lucena, Michel Batista, Kelly Cavalcanti Machado, Fabrício Klerynton Marchini, Fábio Albuquerque Marchi, Rubens Silveira de Lima, Cı́cero de Andrade Urban, Rafael Marchi, Luciane R. Cavalli, Enilze Maria de Souza Fonseca Ribeiro
Software Mentions: 1
Published: almost 4 years ago

10.1128/genomeA.00732-14

Draft Genome Sequence of Bacillus amyloliquefaciens EBL11, a New Strain of Plant Growth-Promoting Bacterium Isolated from Rice Rhizosphere
Cited by: 2
Author(s): Yinghuan Wang, Xiaoyi Wang, Paul Greenfield, Decai Jin, Bai Zhang
Software Mentions: 1
Published: about 10 years ago

10.1128/genomeA.00918-14

Draft Genome Sequence of Strain BF-4, a Lysinibacillus -Like Bacillus Isolated during an Anthrax Outbreak in Bavaria
Cited by: 1
Author(s): Markus Antwerpen, Enrico Georgi, Pia Zimmermann, Stefan Hoermansdorfer, Hermann Meyer, Gregor Grass
Software Mentions: 1
Published: about 10 years ago