pypi: house | Projects | Ecosyste.ms: Papers

10.3390/md19040202

Diversity of Conopeptides and Conoenzymes from the Venom Duct of the Marine Cone Snail Conus bayani as Determined from Transcriptomic and Proteomic Analyses
Cited by: 3
Author(s): Rajesh Rajaian Pushpabai, Carlton Ranjith Wilson Alphonse, Mani Rajasekar, Deepak Apte, Jayaseelan Benjamin Franklin
Software Mentions: 1
Published: over 3 years ago

10.1590/0074-02760180192

Comparative genomics reveals diverse capsular polysaccharide synthesis gene clusters in emerging Raoultella planticola
Cited by: 3
Author(s): Yao‐Ting Huang, Wei-Yao Chuang, Bing-Ching Ho, Zong‐Yen Wu, Rita C. Kuo, Meng-Wei Ko, Po‐Yu Liu
Software Mentions: 1
Published: about 6 years ago

10.3390/metabo11020109

Early Noninvasive Metabolic Biomarkers of Mutant IDH Inhibition in Glioma
Cited by: 13
Author(s): Marina Radoul, Dezhi Hong, Anne Marie Gillespie, Chloé Najac, Pavithra Viswanath, Russell O. Pieper, J Costello, H. Artee Luchman, Sabrina M. Ronen
Software Mentions: 1
Published: almost 4 years ago

10.3390/metabo6040038

Partial Least Squares with Structured Output for Modelling the Metabolomics Data Obtained from Complex Experimental Designs: A Study into the Y-Block Coding
Cited by: 9
Author(s): Yun Xu, Howbeer Muhamadali, Ali Sayqal, Neil Dixon, Royston Goodacre
Software Mentions: 1
Published: about 8 years ago

10.1264/jsme2.ME13110

Low Nitrogen Fertilization Adapts Rice Root Microbiome to Low Nutrient Environment by Changing Biogeochemical Functions
Cited by: 87
Author(s): Seishi Ikeda, Kazuhiro Sasaki, Takashi Okubo, Akifumu Yamashita, Kimihiro Terasawa, Zhihua Bao, Lingxin Chen, Takeshi Watanabe, Jun Murase, Susumu Asakawa, Shima Eda, Hisayuki Mitsui, Tadashi Satô, Kiwamu Minamisawa
Software Mentions: 1
Published: almost 11 years ago

10.1264/jsme2.ME18054

A Newly Designed Primer Revealed High Phylogenetic Diversity of <i>Endozoicomonas</i> in Coral Reefs
Cited by: 9
Author(s): Jia Ho Shiu, Jun-Ren Ding, Ching Hung Tseng, Shueh Ping Lou, Takuma Mezaki, Yu Wu, Hsiang Iu Wang, Sen Lin Tang
Software Mentions: 1
Published: almost 7 years ago

10.1099/mgen.0.000149

Genome analysis of clinical multilocus sequence Type 11 Klebsiella pneumoniae from China
Cited by: 48
Author(s): Ning Dong, Rong Zhang, Lizhang Liu, Ruichao Li, Dachuan Lin, Edward Wai-Chi Chan, Sheng Chen
Software Mentions: 1
Published: almost 7 years ago

10.1128/MRA.00972-20

Draft Genome Sequence of <i>Streptomyces</i> sp. Strain BR123, Endowed with Broad-Spectrum Antimicrobial Potential
Cited by: 4
Author(s): Neelma Ashraf, Andreas Bechthold, Munir Ahmad Anwar, Shazia Khaliq
Software Mentions: 1
Published: about 4 years ago

10.1128/MRA.00311-21

Draft Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas pseudoalcaligenes KB-10
Cited by: 1
Author(s): Mohammad Ashik Iqbal Khan, Jingliang Duan, Bernard R. Glick, Patrick M. Finnegan, Saleh A. Kabli, Saleh M. Al-Garni
Software Mentions: 1
Published: over 3 years ago

10.1128/MRA.00669-19

Complete Genome Sequences of Three Rabbit Endogenous Lentivirus Type K Viruses Obtained from Commercial Meat Rabbits in Italy
Cited by: 0
Author(s): Gianpiero Zamperin, Adelaide Milani, Alice Fusaro, Alessia Schivo, Luca Zandonà, Luca Bano, Isabella Monne
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms8020298

A Rare Glimpse into the Past of the Anthrax Pathogen Bacillus anthracis
Cited by: 3
Author(s): Peter Braun, Mandy Knüpfer, Markus Antwerpen, Dagmar Triebel, Gregor Grass
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms8050716

Whole Genome Sequencing and Comparative Genomic Analyses of Lysinibacillus pakistanensis LZH-9, a Halotolerant Strain with Excellent COD Removal Capability
Cited by: 1
Author(s): Xueling Wu, Han Zhou, Liangzhi Li, Enhui Wang, Xiangyu Zhou, Yifan Gu, Xiaoyan Wu, Li Shen, Weimin Zeng
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA119.001411

Glycoproteogenomics: A Frequent Gene Polymorphism Affects the Glycosylation Pattern of the Human Serum Fetuin/α-2-HS-Glycoprotein
Cited by: 35
Author(s): Yu‐Hsien Lin, Jing Zhu, Sander W. Meijer, Vojtěch Franc, Albert J. R. Heck
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26010070

Alkaloids with Anti-Onchocercal Activity from Voacanga africana Stapf (Apocynaceae): Identification and Molecular Modeling
Cited by: 8
Author(s): Smith B. Babiaka, Conrad V. Simoben, Kennedy O. Abuga, James A. Mbah, Rajshekhar Karpoormath, Dennis Ongarora, Hannington Mugo, Elvis Monya, Fidelis Cho-Ngwa, Wolfgang Sippl, E. Joel Loveridge, Fidele Ntie‐Kang
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00438-021-01771-4

Codon usage bias and environmental adaptation in microbial organisms
Cited by: 31
Author(s): Davide Arella, Maddalena Dilucca, Andrea Giansanti
Software Mentions: 1
Published: over 3 years ago

10.1016/j.molmet.2021.101242

Partial agonism improves the anti-hyperglycaemic efficacy of an oxyntomodulin-derived GLP-1R/GCGR co-agonist
Cited by: 7
Author(s): Phil Pickford, Maria Lucey, Roxana-Maria Rujan, Emma Rose McGlone, Stavroula Bitsi, Fiona Ashford, Ivan R. Corrêa, David J. Hodson, Alejandra Tomás, Giuseppe Deganutti, Christopher A. Reynolds, Bryn M. Owen, Tricia Tan, James Minnion, Ben Jones
Software Mentions: 1
Published: about 3 years ago

10.1002/1878-0261.12549

<scp>CD</scp>300f epitopes are specific targets for acute myeloid leukemia with monocytic differentiation
Cited by: 9
Author(s): Edward Abadir, Robin Gasiorowski, Kaitao Lai, Fiona Kupresanin, Adelina Romano, Pablo A. Silveira, Tsun‐Ho Lo, Phillip D. Fromm, Marina Kennerson, Harry Iland, P. Joy Ho, P. Mark Hogarth, Kenneth F. Bradstock, Derek N. J. Hart, Georgina J. Clark
Software Mentions: 1
Published: over 5 years ago

10.1016/j.omtm.2019.11.014

Cross-Packaging and Capsid Mosaic Formation in Multiplexed AAV Libraries
Cited by: 16
Author(s): Pauline F. Schmit, Simon Pacouret, Eric Zinn, Elizabeth A.R. Telford, Fotini Nicolaou, Frédéric Broucque, Eva Andrés-Mateos, Ran Xiao, Magalie Penaud-Budloo, Mohammed Bouzelha, Nicolas Jaulin, Oumeya Adjali, Eduard Ayuso, Luk Vandenberghe
Software Mentions: 1
Published: over 4 years ago

10.3390/v7052727

Characterization of Novel Transcripts in Pseudorabies Virus
Cited by: 33
Author(s): Dóra Tombácz, Zsolt Csabai, Péter Oláh, Zoltán Havelda, Donald Sharon, M Snyder, Zsolt Boldogkői
Software Mentions: 1
Published: over 9 years ago

10.3390/v8010014

Metaviromics of Namib Desert Salt Pans: A Novel Lineage of Haloarchaeal Salterproviruses and a Rich Source of ssDNA Viruses
Cited by: 21
Author(s): Evelien M. Adriaenssens, Leonardo Joaquim van Zyl, Don A. Cowan, Marla Trindade
Software Mentions: 1
Published: almost 9 years ago

10.3390/v12050498

Codon Usage and Phenotypic Divergences of SARS-CoV-2 Genes
Cited by: 71
Author(s): Maddalena Dilucca, Sergio Forcelloni, Alexandros G. Georgakilas, Andrea Giansanti, Athanasia Pavlopoulou
Software Mentions: 1
Published: over 4 years ago

10.3390/v13030392

SARS-CoV-2 Variant of Concern 202012/01 Has about Twofold Replicative Advantage and Acquires Concerning Mutations
Cited by: 85
Author(s): Frederic Grabowski, Grzegorz Preibisch, Stanisław Giziński, Marek Kochańczyk, Tomasz Lipniacki
Software Mentions: 1
Published: over 3 years ago

10.1186/s13071-019-3478-8

Role of gamma-giardin in ventral disc formation of Giardia lamblia
Cited by: 10
Author(s): Juri Kim, Soon‐Jung Park
Software Mentions: 1
Published: over 5 years ago

10.3390/pathogens9110966

Efficient Confirmation of Plant Viral Proteins and Identification of Specific Viral Strains by nanoLC-ESI-Q-TOF Using Single-Leaf-Tissue Samples
Cited by: 2
Author(s): Pavel Cejnar, Štěpánka Kučková, Jiří Šantrůček, Miroslav Glasa, Petr Komínek, Daniel Mihálik, Lucie Slavíková, Leona Leišová‐Svobodová, Tatiana Anatolievna Smirnova, Radovan Hynek, Jiban Kumar Kundu, P. Ryšánek
Software Mentions: 1
Published: about 4 years ago

10.7717/peerj.3161

Conserved DNA motifs in the type II-A CRISPR leader region
Cited by: 4
Author(s): Mason J Van Orden, Peter S. Klein, Kesavan Babu, Fares Z. Najar, Rakhi Rajan
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.6352

Transcriptome profiling reveals the role of ZBTB38 knock-down in human neuroblastoma
Cited by: 6
Author(s): Jie Chen, Xing Cheng, Yan Li, Yabing Wang, Haosen Wang, Zongmeng Zhang, Daolun Yu, Jie Li, Honglin Li, Jun Li, Yafei Cai
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.7315

Association network analysis identifies enzymatic components of gut microbiota that significantly differ between colorectal cancer patients and healthy controls
Cited by: 10
Author(s): Dongmei Ai, Hongfei Pan, Xiaoxin Li, Min Wu, Xia Li
Software Mentions: 1
Published: over 5 years ago

10.1007/s11095-020-02825-9

Novel application of synchrotron x-ray computed tomography for ex-vivo imaging of subcutaneously injected polymeric microsphere suspension formulations
Cited by: 1
Author(s): Claire Patterson, Dean S. Murphy, Sarah Irvine, Leigh D. Connor, Zahra Rattray
Software Mentions: 1
Published: over 4 years ago

10.14814/phy2.13955

Oscillometry and pulmonary magnetic resonance imaging in asthma and COPD
Cited by: 28
Author(s): Rachel L. Eddy, Andrew Westcott, Geoffrey N. Maksym, Grace Párraga, Ronald Dandurand
Software Mentions: 1
Published: almost 6 years ago

10.3390/plants10051011

Transcriptomic Analysis for the Identification of Metabolic Pathway Genes Related to Toluene Response in Ardisia pusilla
Cited by: 2
Author(s): Jun‐Ping Xu, Chang Ho Ahn, Ju Young Shin, Pil Man Park, Hye Ryun An, Yae-Jin Kim, Su Young Lee
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1008270

Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data
Cited by: 19
Author(s): Camila P. E. de Souza, Mirela Andronescu, Tehmina Masud, Farhia Kabeer, Justina Biele, Emma Laks, Daniel Lai, Patricia Ye, Jazmine Brimhall, Beixi Wang, Edmund Su, Tony Hui, Qi Cao, Marcus Wong, Michelle Moksa, Richard A. Moore, Martin Hirst, Samuel Aparício, Sohrab P. Shah
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pcbi.1007090

Connecting signaling and metabolic pathways in EGF receptor-mediated oncogenesis of glioblastoma
Cited by: 15
Author(s): Arup K. Bag, Sapan Mandloi, Saulius Jarmalavicius, Susmita Mondal, Krishna Kumar, Chhabinath Mandal, Peter Walden, Saikat Chakrabarti, Chitra Mandal
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1003033

Reduced Lateral Mobility of Lipids and Proteins in Crowded Membranes
Cited by: 142
Author(s): Joseph E. Goose, Mark S. P. Sansom
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pcbi.0020042

Designing a Nanotube Using Naturally Occurring Protein Building Blocks
Cited by: 34
Author(s): Chung‐Jung Tsai, Jie Zheng, Ruth Nussinov
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pcbi.1007228

Key residues in TLR4-MD2 tetramer formation identified by free energy simulations
Cited by: 11
Author(s): Alireza Tafazzol, Yong Duan
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1003274

A Tunable Coarse-Grained Model for Ligand-Receptor Interaction
Cited by: 21
Author(s): Teresa Ruiz-Herrero, Javier Estrada, Raúl Guantes, David G. Míguez
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pgen.1005492

The Intolerance of Regulatory Sequence to Genetic Variation Predicts Gene Dosage Sensitivity
Cited by: 120
Author(s): Slavé Petrovski, Ayal B. Gussow, Quanli Wang, Matthew Halvorsen, Yujun Han, William H. Weir, Andrew S. Allen, David B. Goldstein
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pgen.1004359

A Dominant-Negative Mutation of Mouse Lmx1b Causes Glaucoma and Is Semi-lethal via LBD1-Mediated Dimerisation
Cited by: 26
Author(s): Sally H. Cross, Danilo G. Macalinao, Lisa McKie, Lorraine Rose, Alison L. Kearney, Joe Rainger, Caroline Thaung, Margaret Keighren, Shalini Jadeja, West Km, Stephen C. Kneeland, Richard Smith, Gareth R. Howell, Fiona Young, Marcus Robertson, R. van ’t Hof, Simon W. M. John, Ian J. Jackson
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1003876

Eleven Candidate Susceptibility Genes for Common Familial Colorectal Cancer
Cited by: 66
Author(s): Alexandra E. Gylfe, Riku Katainen, Johanna Kondelin, Tomas Tanskanen, Tatiana Cajuso, Ulrika A. Hänninen, Jussi Taipale, Minna Taipale, Laura Renkonen–Sinisalo, Heikki Järvinen, Jukka–Pekka Mecklin∥, Outi Kilpivaara, Esa Pitkänen, Pia Vahteristo, Sari Tuupanen, Auli Karhu, Lauri A. Aaltonen
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pgen.1005794

PAF Complex Plays Novel Subunit-Specific Roles in Alternative Cleavage and Polyadenylation
Cited by: 54
Author(s): Yan Yang, Wencheng Li, Mainul Hoque, Liming Hou, Steven S. Shen, Bin Tian, Brian David Dynlacht
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pgen.1005747

Arabidopsis COP1 SUPPRESSOR 2 Represses COP1 E3 Ubiquitin Ligase Activity through Their Coiled-Coil Domains Association
Cited by: 23
Author(s): Dongqing Xu, Fang Lin, Yan Jiang, Jun‐Jie Ling, Chamari Hettiarachchi, Christian Tellgren-Roth, Magnus Holm, Ning Wei, Xing Wang Deng
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0002678

Genome-Wide Tissue-Specific Gene Expression, Co-expression and Regulation of Co-expressed Genes in Adult Nematode Ascaris suum
Cited by: 42
Author(s): Bruce A. Rosa, Douglas P. Jasmer, Makedonka Mitreva
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pntd.0003841

Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae
Cited by: 39
Author(s): Larry Simpson, Stephen M. Douglass, James A. Lake, Matteo Pellegrini, Feng Li
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0042609

High-Throughput Screening and Rapid Inhibitor Triage Using an Infectious Chimeric Hepatitis C Virus
Cited by: 8
Author(s): Michael J. Wichroski, Jie Fang, Betsy J. Eggers, Ronald E. Rose, Charles E. Mazzucco, Kevin A. Pokornowski, Carl J. Baldick, Monique Anthony, Craig Dowling, Lauren E. Barber, John E. Leet, Brett R. Beno, Samuel W. Gerritz, Michele Agler, Mark I. Cockett, Daniel J. Tenney
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0037313

Gestational Valproate Alters BOLD Activation in Response to Complex Social and Primary Sensory Stimuli
Cited by: 27
Author(s): Ada C. Felix-Ortiz, Marcelo Febo
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0121542

Identification of MicroRNAs and Transcript Targets in Camelina sativa by Deep Sequencing and Computational Methods
Cited by: 18
Author(s): Saroj Poudel, Niranjan Aryal, Chaofu Lu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0060234

QC-Chain: Fast and Holistic Quality Control Method for Next-Generation Sequencing Data
Cited by: 63
Author(s): Qian Zhou, Xiaoquan Su, Anhui Wang, Jian Xu, Kang Ning
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0020575

Polymorphic Structures of Alzheimer's β-Amyloid Globulomers
Cited by: 47
Author(s): Xiaoyan Yu, Jie Zheng
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0110314

Deep Sequencing of RNA from Three Different Extracellular Vesicle (EV) Subtypes Released from the Human LIM1863 Colon Cancer Cell Line Uncovers Distinct Mirna-Enrichment Signatures
Cited by: 171
Author(s): Hong Ji, Maoshan Chen, David W. Greening, Weiming He, Alin Rai, Wenwei Zhang, Richard J. Simpson
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0253916

Lipid profiling suggests species specificity and minimal seasonal variation in Pacific Green and Hawksbill Turtle plasma
Cited by: 3
Author(s): Chelsea E. Clyde-Brockway, Christina R. Ferreira, Elizabeth A. Flaherty, Frank V. Paladino
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0185330

Automatic flow analysis of digital subtraction angiography using independent component analysis in patients with carotid stenosis
Cited by: 8
Author(s): Han Jui Lee, Jia Sheng Hong, Chung Jung Lin, Yi‐Hsuan Kao, Feng Chi Chang, Chao-Bao Luo, Wei Fa Chu
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0015065

Mapping Informative Clusters in a Hierarchial Framework of fMRI Multivariate Analysis
Cited by: 4
Author(s): Rui Xu, Zonglei Zhen, Jia Liu
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0202775

Whole genome shotgun sequencing revealed highly polymorphic genome regions and genes in Escherichia coli O157:H7 isolates collected from a single feedlot
Cited by: 1
Author(s): Xin Gao, Xihua Yang, Lance Noll, Xiaorong Shi, Jay N. Worley, Marc W. Allard, Eric W. Brown, T. G. Nagaraja, Jianghong Meng
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0143274

CARFMAP: A Curated Pathway Map of Cardiac Fibroblasts
Cited by: 13
Author(s): Hieu T. Nim, Milena B. Furtado, Mauro W. Costa, Hiroaki Kitano, Nadia Rosenthal, Sarah Boyd
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0135387

De Novo Transcriptome Analysis of Allium cepa L. (Onion) Bulb to Identify Allergens and Epitopes
Cited by: 17
Author(s): R. Hemalatha, Ramesh Ramagoni, Vijayendra Chary Anchoju, Raju Naik Vankudavath, Arshi Uz Zaman Syed
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0038050

Exome Sequencing and Genetic Testing for MODY
Cited by: 93
Author(s): Stefan Johansson, Henrik Irgens, Kishan Chudasama, Janne Molnes, Jan Aerts, Francisco S. Roque, Inge Jonassen, Shawn Levy, Kari Lima, Per M. Knappskog, Graeme I. Bell, Anders Molven, Pål Rasmus Njølstad
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0156509

Metabolomics Analysis Reveals the Participation of Efflux Pumps and Ornithine in the Response of Pseudomonas putida DOT-T1E Cells to Challenge with Propranolol
Cited by: 12
Author(s): Ali Sayqal, Yun Xu, Drupad K. Trivedi, Najla AlMasoud, David I. Ellis, Nicholas J. W. Rattray, Royston Goodacre
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0186397

Diet alters performance and transcription patterns in Oedaleus asiaticus (Orthoptera: Acrididae) grasshoppers
Cited by: 11
Author(s): Xunbing Huang, Douglas W. Whitman, Jingchuan Ma, M.R. McNeill, Zehua Zhang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0097526

Proteomic Analysis of Trypanosoma cruzi Response to Ionizing Radiation Stress
Cited by: 13
Author(s): Helaine Graziele Santos Vieira, Priscila Grynberg, Mainá Bitar, Simone da Fonseca Pires, Heron Oliveira Hilário, Andréa Mara Macedo, Carlos Renato Machado, Hélida Monteiro de Andrade, Glória Regina Franco
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0070610

Pharmacometabolomic Signature of Ataxia SCA1 Mouse Model and Lithium Effects
Cited by: 14
Author(s): Bertrand Perroud, Paymaan Jafar‐Nejad, William R. Wikoff, Jennifer R. Gatchel, Lu Wang, Dinesh Kumar Barupal, Juan Crespo-Barreto, Oliver Fiehn, Huda Y. Zoghbi, Rima Kaddurah‐Daouk
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0052747

Using Bacteria to Determine Protein Kinase Specificity and Predict Target Substrates
Cited by: 25
Author(s): Michael F. Chou, Sladjana Prisic, Joshua M. Lubner, George M. Church, Robert N. Husson, Daniel Schwartz
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0113773

Specificity Rendering ‘Hot-Spots’ for Aurora Kinase Inhibitor Design: The Role of Non-Covalent Interactions and Conformational Transitions
Cited by: 25
Author(s): Preethi Badrinarayan, G. Narahari Sastry
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0135573

The Fecal Virome of Children with Hand, Foot, and Mouth Disease that Tested PCR Negative for Pathogenic Enteroviruses
Cited by: 18
Author(s): Piyada Linsuwanon, Yong Poovorawan, Linlin Li, Xutao Deng, Sompong Vongpunsawad, Eric Delwart
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0061101

Human Rotavirus VP6-Specific Antibodies Mediate Intracellular Neutralization by Binding to a Quaternary Structure in the Transcriptional Pore
Cited by: 53
Author(s): Mohammed S. Aiyegbo, Gopal Sapparapu, Benjamin W. Spiller, Ilyas M. Eli, Dewight Williams, Robert Kim, David E. Lee, Tong Liu, Li Sheng, Virgil L. Woods, D.P. Nannemann, Jens Meiler, Phoebe L. Stewart, James E. Crowe
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0063908

Virtual and Biophysical Screening Targeting the γ-Tubulin Complex – A New Target for the Inhibition of Microtubule Nucleation
Cited by: 13
Author(s): Olivier Cala, Marie-Hélène Remy, Valérie Guillet, Andreas Merdes, Lionel Mourey, Alain Milon, Georges Czaplicki
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0108414

Dynamic Contrast Enhanced MRI Detects Early Response to Adoptive NK Cellular Immunotherapy Targeting the NG2 Proteoglycan in a Rat Model of Glioblastoma
Cited by: 27
Author(s): Cecilie Brekke Rygh, Jian Wang, Marte Thuen, Andrea Gras Navarro, Else Marie Huuse, Frits Thorsen, Aurélie Poli, Jacques Zimmer, Olav Haraldseth, Stein Atle Lie, Per Øyvind Enger, Martha Chekenya
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0092123

Neural Mechanisms of Time-Based Prospective Memory: Evidence for Transient Monitoring
Cited by: 34
Author(s): Kevin M Oksanen, Emily R. Waldum, Mark A. McDaniel, Todd S. Braver
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0159929

Altered Blood Biomarker Profiles in Athletes with a History of Repetitive Head Impacts
Cited by: 37
Author(s): Alex P. Di Battista, Shawn G. Rhind, Doug Richards, Nathan W. Churchill, Andrew J. Baker, Michael Hutchison
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0141045

A Novel Human scFv Library with Non-Combinatorial Synthetic CDR Diversity
Cited by: 16
Author(s): Xuelian Bai, Jihye Kim, Sang Hun Kang, Wankyu Kim, Hyunbo Shim
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0067631

Dynamic Regulation of Hepatic Lipid Droplet Properties by Diet
Cited by: 63
Author(s): Amanda E. Crunk, Jenifer Monks, Aya Murakami, Matthew R. Jackman, Paul S. MacLean, Mark S. Ladinsky, Elise S. Bales, Shannon Cain, David J. Orlicky, James L. McManaman
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0108046

Label-Free LC-MSe in Tissue and Serum Reveals Protein Networks Underlying Differences between Benign and Malignant Serous Ovarian Tumors
Cited by: 17
Author(s): Wouter Wegdam, Carmen Argmann, Gertjan Kramer, Johannes P.C. Vissers, Marrije R. Buist, Gemma G. Kenter, Johannes M. F. G. Aerts, Daniëlle Meijer, Perry D. Moerland
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0211139

Use of shotgun metagenomics for the identification of protozoa in the gut microbiota of healthy individuals from worldwide populations with various industrialization levels
Cited by: 39
Author(s): Ana Lokmer, Amandine Cian, Alain Froment, Nausicâa Gantois, Éric Viscogliosi, Magali Chabé, Laure Ségurel
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0066197

Molecular Genetic Diversity of Major Indian Rice Cultivars over Decadal Periods
Cited by: 48
Author(s): Gangaprasad Choudhary, Ranjitkumar Nagireddy, S. Malathi, Dondapati Annekitty Deborah, Abhilash Kumar Vipparla, G. Anuradha, E. A. Siddiq, Lakshminarayana R. Vemireddy
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0196069

The chloroplast genome sequence of bittersweet (Solanum dulcamara): Plastid genome structure evolution in Solanaceae
Cited by: 71
Author(s): Ali Amiryousefi, Jaakko Hyvönen, Péter Poczai
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0189889

Identification of chemosensory genes from the antennal transcriptome of Indian meal moth Plodia interpunctella
Cited by: 30
Author(s): Xiaojian Jia, Xiaofang Zhang, Hong‐Min Liu, Rongyan Wang, Tao Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0192954

DJ-1 based peptide, ND-13, promote functional recovery in mouse model of focal ischemic injury
Cited by: 13
Author(s): Lior Molcho, Tali Ben‐Zur, Yael Barhum, Daniel Offen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0199162

Sequence characteristics define trade-offs between on-target and genome-wide off-target hybridization of oligoprobes
Cited by: 3
Author(s): O. V. Matveeva, Aleksey Y. Ogurtsov, Н.Н. Назипова, Svetlana A. Shabalina
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0183554

Shared features of cryptic plasmids from environmental and pathogenic Francisella species
Cited by: 12
Author(s): Jean F. Challacombe, Segaran P. Pillai, Cheryl R. Kuske
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0066584

Complete Genome Analysis of Three Acinetobacter baumannii Clinical Isolates in China for Insight into the Diversification of Drug Resistance Elements
Cited by: 66
Author(s): Lingxiang Zhu, Yan Zhang, Zhaojun Zhang, Qiming Zhou, Jianuan Zhou, Edward K. Wakeland, Xiangdong Fang, Zhenyu Xuan, Dejian Shen, Quan Zhen Li
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0019730

Structure-Function Analysis of STRUBBELIG, an Arabidopsis Atypical Receptor-Like Kinase Involved in Tissue Morphogenesis
Cited by: 45
Author(s): Prasad Vaddepalli, Lynette Fulton, Martine Batoux, Ram Kishor Yadav, Kay Schneitz
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0135024

Molecular Architecture of Spinal Cord Injury Protein Interaction Network
Cited by: 6
Author(s): Ali Alawieh, Mohammed Sabra, Zahraa Sabra, Stephen Tomlinson, Fadi A. Zaraket
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0128106

Common Genetic Variation In Cellular Transport Genes and Epithelial Ovarian Cancer (EOC) Risk
Cited by: 25
Author(s): Ganna Chornokur, Hui‐Yi Lin, Jonathan P. Tyrer, Kate Lawrenson, Joe Dennis, Ernest K. Amankwah, Xiaotao Qu, Ya-Yu Tsai, Heather Jim, Zhihua Chen, Ann Y. Chen, Jennifer Permuth-Wey, Katja K.H. Aben, Hoda Anton‐Culver, Natalia Antonenkova, Fiona Bruinsma, Elisa V. Bandera, Yukie T. Bean, Matthias W. Beckmann, Maria Bisogna, Line Bjørge, Natalia Bogdanova, Louise A. Brinton, Angela Brooks‐Wilson, Clareann H. Bunker, Ralf Bützow, Ian Campbell, Karen Carty, Jenny Chang‐Claude, Linda S. Cook, Daniel W. Cramer, Julie M. Cunningham, Cezary Cybulski, Agnieszka Dansonka-Mieszkowska, Andreas du Bois, Evelyn Despierre, Ed Dicks, Jennifer A. Doherty, Thilo Dörk, Matthias Dürst, Douglas F. Easton, Diana Eccles, Robert P. Edwards, Arif B. Ekici, Peter A. Fasching, Brooke L. Fridley, Yu‐Tang Gao, Aleksandra Gentry‐Maharaj, Graham G. Giles, Rosalind Glasspool, Marc T. Goodman, Jacek Gronwald, Patricia Harrington, Philipp Harter, Alexander Hein, Florian Heitz, Michelle A.T. Hildebrandt, Peter Hillemanns, Claus Høgdall, Estrid Høgdall, Satoyo Hosono, Anna Jakubowska, Allan Jensen, Bu‐Tian Ji, Beth Y. Karlan, Linda E. Kelemen, Mellissa Kellar, Lambertus A. Kiemeney, Camilla Krakstad, Susanne K. Kjær, Jolanta Kupryjańczyk, Diether Lambrechts, Sandrina Lambrechts, Nhu D. Le, Alice W. Lee, Shashi Lele, Arto Leminen, Jenny Lester, Douglas A. Levine, Dong Liang, Boon Kiong Lim, Jolanta Lissowska, Karen H. Lu, Jan Lubiński, Lene Lundvall, Leon F.A.G. Massuger, Keitaro Matsuo, Valerie McGuire, John McLaughlin, Iain A. McNeish, Usha Menon, Roger L. Milne, Francesmary Modugno, Kirsten B. Moysich, Roberta B. Ness, H. R. Nevanlinna, Ursula Eilber, Kunle Odunsi, Sara H. Olson, Irene Orlow, Sandra Oršulić, Rachel Palmieri Weber, James Paul, Celeste Leigh Pearce, Tanja Pejović, Liisa M. Pelttari, Malcolm C. Pike, Elizabeth M. Poole, Harvey A. Risch, Barry P. Rosen, Mary Anne Rossing, Joseph H. Rothstein, Anja Rudolph, Ingo B. Runnebaum, Iwona K. Rzepecka, Helga B. Salvesen, Eva Schernhammer, Ira Schwaab, Xiao‐Ou Shu, Yurii B. Shvetsov, Nadeem Siddiqui, Weiva Sieh, Honglin Song, Melissa C. Southey, Beata Śpiewankiewicz, Lara Sucheston, Soo‐Hwang Teo, Kathryn L. Terry, Pamela J. Thompson, Lotte Thomsen, Ingvild L. Tangen, Shelley S. Tworoger, Anne M. van Altena, Robert A. Vierkant, Ignace Vergote, Christine Walsh, Shan Wang-Gohrke, Nicolas Wentzensen, Alice S. Whittemore, Kristine G. Wicklund, Lynne R. Wilkens, Anna H. Wu, Xifeng Wu, Yin Ling Woo, Hannah Yang, Zheng Wang, Argyrios Ziogas, Hanis Nazihah Hasmad, Andrew Berchuck, Edwin S. Iversen, Joellen M. Schildkraut, Susan J. Ramus, Ellen L. Goode, Alvaro N.A. Monteiro, Simon A. Gayther, Steven A. Narod, Paul D.P. Pharoah, Thomas A. Sellers, Catherine M. Phelan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0067634

A Novel Phosphopeptide Microarray Based Interactome Map in Breast Cancer Cells Reveals Phosphoprotein-GRB2 Cell Signaling Networks
Cited by: 10
Author(s): Srinivasan Krishnamoorthy, Liu Z, Ailing Hong, Ruijuan Zhu, Haosi Chen, Tongbin Li, Xiaochuan Zhou, Xiaolian Gao
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0009841

Abundant Oligonucleotides Common to Most Bacteria
Cited by: 10
Author(s): Colin Davenport, Burkhard Tümmler
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0197829

Analysis of microRNAs in familial Mediterranean fever
Cited by: 18
Author(s): Gil Amarilyo, Nir Pillar, Ilan Ben-Zvi, Daphna Weissglas‐Volkov, Jonatan Zalcman, Liora Harel, Avi Livneh, Noam Shomron
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0159393

Transcriptomic and Expression Analysis of the Salivary Glands in White-Backed Planthoppers, Sogatella furcifera
Cited by: 15
Author(s): Zhen Li, Xiaopeng An, Yudi Liu, Maolin Hou
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0004869

Distinct Regions of Right Temporo-Parietal Junction Are Selective for Theory of Mind and Exogenous Attention
Cited by: 201
Author(s): Jonathan Scholz, Christina Triantafyllou, Susan Whitfield‐Gabrieli, Emery N. Brown, Rebecca Saxe
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0017666

MicroRNA Genes Derived from Repetitive Elements and Expanded by Segmental Duplication Events in Mammalian Genomes
Cited by: 78
Author(s): Zhixiang Yuan, Xiao Sun, Hongde Liu, Jingjing Xie
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0015513

The Integrative Analysis of microRNA and mRNA Expression in Mouse Uterus under Delayed Implantation and Activation
Cited by: 40
Author(s): Ren-Wei Su, Lei Wei, Ji‐Long Liu, Zhi Rong Zhang, Bo Jia, Xuemei Feng, Gang Ren, Shijun Hu, Zeng‐Ming Yang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0104286

Target Repression Induced by Endogenous microRNAs: Large Differences, Small Effects
Cited by: 27
Author(s): Ana Kozomara, Suzanne M. Hunt, Maria Ninova, Sam Griffiths-Jones, Matthew Ronshaugen
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0120251

Assessing the Perception of Trunk Movements in Military Personnel with Chronic Non-Specific Low Back Pain Using a Virtual Mirror
Cited by: 16
Author(s): Meyke Roosink, Bradford J. McFadyen, Luc J. Hébert, Philip L. Jackson, Laurent J. Bouyer, Catherine Mercier
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0016486

Performance of Microarray and Liquid Based Capture Methods for Target Enrichment for Massively Parallel Sequencing and SNP Discovery
Cited by: 26
Author(s): Anna Kiialainen, Olof Karlberg, Annika Ahlford, Snaevar Sigurðsson, Kerstin Lindblad‐Toh, Ann‐Christine Syvänen
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0190169

Ancient mitogenomes of Phoenicians from Sardinia and Lebanon: A story of settlement, integration, and female mobility
Cited by: 42
Author(s): Elizabeth Matisoo-Smith, Anna L. Gosling, Daniel E. Platt, Olga Kardailsky, Stefan Prost, Sophia Cameron-Christie, Catherine Collins, James Boocock, Yara Kurumilian, Michele Guirguis, Michele Guirguis, Wissam Khalil, Hermann Genz, Georges Abou Diwan, Joyce Nassar, Pierre Zalloua
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0102895

Multiplicity of 5′ Cap Structures Present on Short RNAs
Cited by: 30
Author(s): Rehab F. Abdelhamid, Charles Plessy, Yoshio Yamauchi, Masato Taoka, Michiel de Hoon, T Gingeras, Toshiaki Isobe, Piero Carninci
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0058449

Virulence Gene Profiling and Pathogenicity Characterization of Non-Typhoidal Salmonella Accounted for Invasive Disease in Humans
Cited by: 138
Author(s): Jotham Suez, Steffen Porwollik, Amir Dagan, Alex Marzel, Yosef Ilan Schorr, Prerak Desai, Vered Agmon, Michael McClelland, Galia Rahav, Ohad Gal-Mor
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0093644

Characterization of Dietary Patterns in the Danish National Birth Cohort in Relation to Preterm Birth
Cited by: 54
Author(s): Morten Arendt Rasmussen, Ekaterina Maslova, Thórhallur I. Halldórsson, Sjúrður F. Olsen
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0033323

Involvement of Wnt Signaling Pathways in the Metamorphosis of the Bryozoan Bugula neritina
Cited by: 21
Author(s): Yue Him Wong, Hao Wang, Timothy Ravasi, Pei‐Yuan Qian
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0074866

Natural Carbon Isotope Abundance of Plasma Metabolites and Liver Tissue Differs between Diabetic and Non-Diabetic Zucker Diabetic Fatty Rats
Cited by: 6
Author(s): Jean‐Philippe Godin, Alastair B. Ross, Marilyn Cléroux, Etienne Pouteau, Ivan Montoliu, Mireille Moser, Sunil Kochhar
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0042690

The Guanine-Quadruplex Structure in the Human c-myc Gene's Promoter Is Converted into B-DNA Form by the Human Poly(ADP-Ribose)Polymerase-1
Cited by: 34
Author(s): Anna Fekete, Erzsébet Kénesi, Éva Hunyadi‐Gulyás, Hajnalka Dürgő, Barbara Berko, Zsuzsanna A. Dunai, Paul Bauer
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0200628

An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches
Cited by: 41
Author(s): Marcelo R.V. Diniz, Ana Luiza Bittencourt Paiva, Clara Guerra-Duarte, Milton Yutaka Nishiyama, Maurício A. Mudadu, Ursula de Oliveira, Márcia Helena Borges, John R. Yates, Inácio L.M. Junqueira-de-Azevedo
Software Mentions: 1
Published: over 6 years ago

Projects: pypi: house

Papers Mentioning house 960