Ecosyste.ms: Papers

10.1002/mgg3.23

Identification of novel point mutations in splicing sites integrating whole‐exome and <scp>RNA</scp> ‐seq data in myeloproliferative diseases
Cited by: 14
Author(s): Roberta Spinelli, Alessandra Pirola, Sara Redaelli, Nitesh Sharma, Hima Raman, Simona Valletta, Vera Magistroni, Rocco Piazza, Carlo Gambacorti‐Passerini
Software Mentions: 2
Published: over 11 years ago

10.1002/mgg3.665

<i>BRPF1</i>‐associated intellectual disability, ptosis, and facial dysmorphism in a multiplex family
Cited by: 17
Author(s): Naomi Pode‐Shakked, Ortal Barel, Ben Pode‐Shakked, Aviva Eliyahu, Amihood Singer, Omri Nayshool, Nitzan Kol, Annick Raas‐Rothschild, Elon Pras, Mordechai Shohat
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-019-1663-8

Thymol tolerance in Escherichia coli induces morphological, metabolic and genetic changes
Cited by: 9
Author(s): Fatemah Al-Kandari, Rabeah Al-Temaimi, Arnoud H. M. van Vliet, Martin J. Woodward
Software Mentions: 2
Published: almost 5 years ago

10.1002/mgg3.176

The dentin phosphoprotein repeat region and inherited defects of dentin
Cited by: 17
Author(s): Jie Yang, Kazuhiko Kawasaki, Moses Lee, Brendan N. Reid, Stephanie M. Núñez, Murim Choi, Figen Seymen, Mine Koruyucu, Yelda Kasımoğlu, Ninna Estrella‐Yuson, Brent Lin, James P. Simmer, Jan C.‐C. Hu
Software Mentions: 2
Published: about 9 years ago

10.1186/s13073-020-00822-6

An integrated in silico immuno-genetic analytical platform provides insights into COVID-19 serological and vaccine targets
Cited by: 19
Author(s): Daniel Ward, M.K. Higgins, Jody Phelan, Martin L. Hibberd, Susana Campino, Taane G. Clark
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41438-020-0308-2

A pentaploid-based linkage map of the ancestral octoploid strawberry Fragaria virginiana reveals instances of sporadic hyper-recombination
Cited by: 4
Author(s): Thomas M. Davis, Yayuan Yang, Lise L. Mahoney, Daniel C. Frailey
Software Mentions: 2
Published: over 4 years ago

10.3390/molecules25112651

Cryptococcus neoformans Capsular GXM Conformation and Epitope Presentation: A Molecular Modelling Study
Cited by: 14
Author(s): Michelle M. Kuttel, Arturo Casadevall, Stefan Oscarson
Software Mentions: 2
Published: over 4 years ago

10.1093/gbe/evx241

Pathogenomic Analysis of Wheat Yellow Rust Lineages Detects Seasonal Variation and Host Specificity
Cited by: 40
Author(s): Vanessa Bueno-Sancho, Antoine Persoons, Amelia Hubbard, Luis Enrique Cabrera-Quio, Clare M. Lewis, Pilar Corredor‐Moreno, Daniel C. E. Bunting, Sajid Ali, Soonie Chng, David Hodson, Ricardo Madariaga Burrows, R. J. Bryson, Jane Thomas, Sarah Holdgate, Diane G. O. Saunders
Software Mentions: 2
Published: about 7 years ago

10.1093/gbe/evy029

Genomic Architecture of the Two Cold-Adapted Genera Exiguobacterium and Psychrobacter: Evidence of Functional Reduction in the Exiguobacterium antarcticum B7 Genome
Cited by: 15
Author(s): Larissa Maranhão Dias, Adriana Ribeiro Carneiro Folador, Amanda M.S. Oliveira, Rommel Thiago Jucá Ramos, Artur M. S. Silva, Rafael Azevedo Baraúna
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-10-282

Analysis of salivary transcripts and antigens of the sand fly Phlebotomus arabicus
Cited by: 64
Author(s): Jitka Hostomská, Věra Volfová, Jianbing Mu, Mark Garfield, Iva Rohoušová, Petr Volf, Jesús G. Valenzuela, Ryan C. Jochim
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2105-13-253

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes
Cited by: 15
Author(s): Danielle G. Lemay, William Martin, Angie S. Hinrichs, Monique Rijnkels, J. Bruce German, Ian F Korf, Katherine S. Pollard
Software Mentions: 2
Published: about 12 years ago

10.1074/mcp.RA117.000393

Lysine Succinylation Contributes to Aflatoxin Production and Pathogenicity in Aspergillus flavus
Cited by: 42
Author(s): Silin Ren, Mingkun Yang, Yuewei Yue, Feng Ge, Yu Li, Xiaodong Guo, Jia Zhang, Feng Zhang, Xiaowei Nie, Shihua Wang
Software Mentions: 2
Published: over 6 years ago

10.1186/s12920-021-01040-8

Characterization of DNA lesions associated with cell-free DNA by targeted deep sequencing
Cited by: 2
Author(s): Seung-Ho Shin, Woong-Yang Park, Donghyun Park
Software Mentions: 2
Published: over 3 years ago

10.1186/gm387

Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines
Cited by: 34
Author(s): Pelin Akan, Andrey Alexeyenko, Paul Igor Costea, Lilia Hedberg, Beata Werne Solnestam, Sverker Lundin, Jimmie Hällman, Emma Lundberg, Mathias Uhlén, Joakim Lundeberg
Software Mentions: 2
Published: almost 13 years ago

10.1093/molbev/msy243

Influence of Recombination and GC-biased Gene Conversion on the Adaptive and Nonadaptive Substitution Rate in Mammals versus Birds
Cited by: 36
Author(s): Marjolaine Rousselle, Alexandre Laverré, Emeric Figuet, Benoît Nabholz, Nicolas Galtier
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12920-019-0531-6

Increased diagnostic yield by reanalysis of data from a hearing loss gene panel
Cited by: 15
Author(s): Yu Sun, Jiale Xiang, Yidong Liu, Sen Chen, Jintao Yu, Jiguang Peng, Zijing Liu, Lisha Chen, Jun Sun, Yun Yang, Yaping Yang, Yulin Zhou, Zhiyu Peng
Software Mentions: 2
Published: over 5 years ago

10.1093/molbev/msw242

Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication
Cited by: 119
Author(s): Yezi Xiang, Chien-Hua Huang, Yi Hu, Jun Wen, Shisheng Li, Ting‐Shuang Yi, Hongyi Chen, Jun Xiang, Hong Mā
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-015-1846-0

Skipper genome sheds light on unique phenotypic traits and phylogeny
Cited by: 36
Author(s): Qian Cong, Dominika Borek, Zbyszek Otwinowski, Nick V. Grishin
Software Mentions: 2
Published: about 9 years ago

10.3390/microorganisms7110480

Introducing Murine Microbiome Database (MMDB): A Curated Database with Taxonomic Profiling of the Healthy Mouse Gastrointestinal Microbiome
Cited by: 16
Author(s): Jinlong Yang, Jong‐Hyun Park, Sein Park, Inwoo Baek, Jongsik Chun
Software Mentions: 2
Published: about 5 years ago

10.1186/s12916-021-02034-0

Metagenome-wide association study of gut microbiome revealed potential microbial marker set for diagnosis of pediatric myasthenia gravis
Cited by: 17
Author(s): Peng Liu, Yiqi Jiang, Shanshan Gu, Yinping Xue, Hongxia Yang, Yongzhao Li, Yaxuan Wang, Congya Yan, Peng Jia, Lin X, Guoyan Qi
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms8091391

A New Method for Next-Generation Sequencing of the Full Hepatitis B Virus Genome from A Clinical Specimen: Impact for Virus Genotyping
Cited by: 5
Author(s): Flávia Hebeler-Barbosa, Ivan Rodrigo Wolf, Guilherme Targino Valente, Francisco Campello do Amaral Mello, Elisabeth Lampe, Maria Inês de Moura Campos Pardini, Rejane Maria Tommasini Grotto
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms8060795

Microbiome of the Queensland Fruit Fly through Metamorphosis
Cited by: 17
Author(s): Rajib Majumder, Brodie Sutcliffe, Phillip W. Taylor, Toni A. Chapman
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-15-S8-S1

Impact of analytic provenance in genome analysis
Cited by: 12
Author(s): Shatavia S. Morrison, Roman Pyzh, Myung Shin Jeon, Carmen Amaro, Francisco J. Roig, Craig Baker‐Austin, James D. Oliver, Cynthia Gibas
Software Mentions: 2
Published: about 10 years ago

10.3390/antibiotics10080886

Impact of Chronic Tetracycline Exposure on Human Intestinal Microbiota in a Continuous Flow Bioreactor Model
Cited by: 7
Author(s): Youngbeom Ahn, Ji Young Jung, Ohgew Kweon, Brian T Veach, Sangeeta Khare, Kuppan Gokulan, Silvia A. Piñeiro, Carl E. Cerniglia
Software Mentions: 2
Published: over 3 years ago

10.1186/s13073-015-0259-7

Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network
Cited by: 58
Author(s): Hayley J. Brodrick, Kathy E. Raven, Ewan M. Harrison, Beth Blane, Sandra Reuter, M. Estée Török, Julian Parkhill, Sharon J. Peacock
Software Mentions: 2
Published: almost 9 years ago

10.1128/genomeA.01309-14

Draft Genome Sequence of Sphingomonas sp. Strain Ant20, Isolated from Oil-Contaminated Soil on Ross Island, Antarctica
Cited by: 6
Author(s): Sandra Ronca, Aline Frossard, Leandro D. Guerrero, Thulani P. Makhalanyane, Jackie Aislabie, Don A. Cowan
Software Mentions: 2
Published: over 9 years ago

10.1186/s40168-019-0718-2

Contribution of gut microbiota to metabolism of dietary glycine betaine in mice and in vitro colonic fermentation
Cited by: 60
Author(s): Ville Koistinen, Olli Kärkkäinen, Klaudyna Borewicz, Iman Zarei, Jenna Jokkala, Valérie Micard, Natalia Rosa‐Sibakov, Seppo Auriola, Anna Marja Aura, Hauke Smidt, Kati Hanhineva
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-017-4301-6

The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains
Cited by: 19
Author(s): Friedhelm Pfeiffer, Maria-Antonia Zamora-Lagos, Martin Blettinger, Assa Yeroslaviz, Andreas Dahl, Stephan Gruber, Bianca Habermann
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0050961

Deep Sequencing of RNA from Ancient Maize Kernels
Cited by: 38
Author(s): Sarah L. Fordyce, María C. Ávila-Arcos, Morten Rasmussen, Enrico Cappellini, J. Alberto Romero-Navarro, Nathan Wales, David E. Alquezar‐Planas, Steven Penfield, Terence A. Brown, Jean‐Philippe Vielle‐Calzada, Rafaél Montiel, Tina Jørgensen, Nancy Odegaard, Michael A. Jacobs, Bernardo Arriaza, Thomas Higham, Christopher Bronk Ramsey, Eske Willerslev, M. Thomas P. Gilbert
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0107351

Full-Length Enriched cDNA Libraries and ORFeome Analysis of Sugarcane Hybrid and Ancestor Genotypes
Cited by: 23
Author(s): Milton Yutaka Nishiyama, Sávio Siqueira Ferreira, Pei Zhong Tang, Scott A. Becker, Antje Pörtner-Taliana, Gláucia Mendes Souza
Software Mentions: 2
Published: about 10 years ago

10.3390/antibiotics10091059

Taxonomic and Functional Distribution of Bacterial Communities in Domestic and Hospital Wastewater System: Implications for Public and Environmental Health
Cited by: 2
Author(s): Ramganesh Selvarajan, Timothy Sibanda, Jeevan Pandian, Kevin Mearns
Software Mentions: 2
Published: about 3 years ago

10.3389/fvets.2021.682514

Transcriptome Differences in Pig Tracheal Epithelial Cells in Response to Pasteurella Multocida Infection
Cited by: 7
Author(s): Xueying Wang, Fei Wang, Lin Lin, Wan Liang, Songtao Liu, Hua Lin, Xiangru Wang, Huanchun Chen, Zhong Peng, Bin Wu
Software Mentions: 2
Published: over 3 years ago

10.1128/MRA.00881-19

Coding-Complete Genome Sequence of a Pollen-Associated Virus Belonging to the <i>Secoviridae</i> Family Recovered from a Japanese Apricot ( <i>Prunus mume</i> ) Metagenome Data Set
Cited by: 2
Author(s): Andrea M. Fetters, Paul G. Cantalupo, Tia‐Lynn Ashman, James M. Pipas
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-019-5854-3

hg19KIndel: ethnicity normalized human reference genome
Cited by: 12
Author(s): Harsh Shukla, Pushpinder Bawa, Subhashini Srinivasan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0030080

Customisation of the Exome Data Analysis Pipeline Using a Combinatorial Approach
Cited by: 21
Author(s): Swetansu Pattnaik, Srividya Vaidyanathan, Durgad G. Pooja, S. A. Deepak, Binay Panda
Software Mentions: 2
Published: almost 13 years ago

10.3389/fvets.2021.598691

Changes of Intestinal Oxidative Stress, Inflammation, and Gene Expression in Neonatal Diarrhoea Kids
Cited by: 14
Author(s): Yan Cheng, Chao Yang, Zhiliang Tan, Zhixiong He
Software Mentions: 2
Published: almost 4 years ago

10.1534/g3.119.400279

Genome Sequencing of <i>Pleurozium schreberi</i>: The Assembled and Annotated Draft Genome of a Pleurocarpous Feather Moss
Cited by: 20
Author(s): Eric Pederson, Denis Warshan, Ulla Rasmussen
Software Mentions: 2
Published: about 5 years ago

10.1093/gbe/evu146

A Large Number of Nuclear Genes in the Human Parasite Blastocystis Require mRNA Polyadenylation to Create Functional Termination Codons
Cited by: 10
Author(s): Vladimír Klimeš, Eleni Gentekaki, Andrew J. Roger, Marek Eliáš
Software Mentions: 2
Published: over 10 years ago

10.1186/s13073-020-0719-6

Cell-free DNA analysis reveals POLR1D-mediated resistance to bevacizumab in colorectal cancer
Cited by: 21
Author(s): Qing Zhou, Samantha Perakis, Peter Ulz, Sumitra Mohan, Jakob M. Riedl, Emina Talakić, Sigurd Lax, Martin Tötsch, Gerald Höefler, Thomas Bauernhofer, Martin Pichler, Armin Gerger, Jochen B. Geigl, Ellen Heitzer, Michael R. Speicher
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1003877

Alphavirus Mutator Variants Present Host-Specific Defects and Attenuation in Mammalian and Insect Models
Cited by: 90
Author(s): Kathryn Rozen-Gagnon, Kenneth A. Stapleford, Vanesa Mongelli, Hervé Blanc, Anna‐Bella Failloux, Maria‐Carla Saleh, Marco Vignuzzi
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0159716

Targeting Tumor Cells with Anti-CD44 Antibody Triggers Macrophage-Mediated Immune Modulatory Effects in a Cancer Xenograft Model
Cited by: 16
Author(s): Daniela Maisel, Fabian Birzele, Edgar Voß, Adam Nopora, Sabine Bader, Thomas Friess, Bernhard Göller, Daphna Laifenfeld, Stefan Weigand, Valeria Runza
Software Mentions: 2
Published: over 8 years ago

10.3389/fphar.2017.00088

Analyses of mRNA Profiling through RNA Sequencing on a SAMP8 Mouse Model in Response to Ginsenoside Rg1 and Rb1 Treatment
Cited by: 11
Author(s): Shuai Zhang, Dina Zhu, Hong Li, Haijing Zhang, Feng Cheng, Wensheng Zhang
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2016.01842

Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq
Cited by: 26
Author(s): Jinlong Zhang, Jiaxue Wang, Wei Jiang, Juge Liu, Songnan Yang, Junyi Gai, Yan Li
Software Mentions: 2
Published: almost 8 years ago

10.3389/fphar.2019.01331

Transcriptome Analyses of the Anti-Proliferative Effects of 20(S)-Ginsenoside Rh2 on HepG2 Cells
Cited by: 13
Author(s): Ji Zhang, Weibo Li, Qiaoyun Yuan, Jing Zhou, Jianmei Zhang, Yufeng Cao, Guangbo Fu, Weicheng Hu
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0222171

Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method
Cited by: 13
Author(s): Sukithar Rajan, Carl Mårten Lindqvist, Robert Jan Brummer, Ida Schoultz, Dirk Repsilber
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.00646

Method for the Identification of Plant DNA in Food Using Alignment-Free Analysis of Sequencing Reads: A Case Study on Lupin
Cited by: 7
Author(s): Kairi Raime, Kaarel Krjutškov, Maido Remm
Software Mentions: 2
Published: over 4 years ago

10.3389/fnana.2017.00085

A Connectomic Analysis of the Human Basal Ganglia Network
Cited by: 58
Author(s): Alberto Cacciola, Alessandro Calamuneri, Demetrio Milardi, Enricomaria Mormina, Gaetana Chillemi, Silvia Marıno, Antonino Naro, Giuseppina Rizzo, Giuseppe Anastasi, Angelo Quartarone
Software Mentions: 2
Published: about 7 years ago

10.3389/fmolb.2020.609088

Surprisingly Fast Interface and Elbow Angle Dynamics of Antigen-Binding Fragments
Cited by: 10
Author(s): Monica L. Fernández‐Quintero, Katharina B. Kroell, Martin C. Heiss, Johannes R. Loeffler, Patrick K. Quoika, Franz Waibl, Alexander Bujotzek, Ekkehard Moessner, Guy Georges, Klaus R. Liedl
Software Mentions: 2
Published: almost 4 years ago

10.3389/fninf.2017.00017

Evaluation of Field Map and Nonlinear Registration Methods for Correction of Susceptibility Artifacts in Diffusion MRI
Cited by: 114
Author(s): Sijia Wang, Daniel J. Peterson, J. Christopher Gatenby, Wenbin Li, Thomas J. Grabowski, Tara M. Madhyastha
Software Mentions: 2
Published: over 7 years ago

10.1186/s12934-018-1039-z

One-step affinity purification of fusion proteins with optimal monodispersity and biological activity: application to aggregation-prone HPV E6 proteins
Cited by: 3
Author(s): Anna Bonhoure, Auguste Demenge, Camille Kostmann, Leticia San José, Eva De la Cal, Pilar Armisén, Yves Nominé, Gilles Travé
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmolb.2020.00162

The Voltage-Dependent Deactivation of the KvAP Channel Involves the Breakage of Its S4 Helix
Cited by: 2
Author(s): Olivier Bignucolo, Simon Bernèche
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2017.00795

Comparative Analysis of Transcriptomes in Rhizophoraceae Provides Insights into the Origin and Adaptive Evolution of Mangrove Plants in Intertidal Environments
Cited by: 25
Author(s): Wuxia Guo, Haidan Wu, Zhang Zhang, Chao Yang, Ling Hu, Xianggang Shi, Shuguang Jian, Suhua Shi, Yelin Huang
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0097363

Resting Brain Perfusion and Selected Vascular Risk Factors in Healthy Elderly Subjects
Cited by: 22
Author(s): Otto Mølby Henriksen, Lars T. Jensen, K. S. Krabbe, Per Guldberg, Tom Teerlink, Egill Rostrup
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-12-463

Genome wide gene expression regulation by HIP1 Protein Interactor, HIPPI: Prediction and validation
Cited by: 13
Author(s): Moumita Datta, Ananyo Choudhury, Ansuman Lahiri, Nitai P. Bhattacharyya
Software Mentions: 2
Published: about 13 years ago

10.1111/1751-7915.13305

Comparative proteomic analysis of four biotechnological strains<i>Lactococcus lactis</i>through label-free quantitative proteomics
Cited by: 10
Author(s): Wanderson M. Silva, Cassiana Severiano de Sousa, Lívia Costa de Oliveira, Siomar C. Soares, Gustavo H. M. F. Souza, Guilherme Campos Tavares, Cristiana Perdigão Resende, Edson Luiz Folador, Felipe L. Pereira, Henrique César Pereira Figueiredo, Vasco Azevedo
Software Mentions: 2
Published: about 6 years ago

10.1186/s12862-017-0924-0

Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC
Cited by: 13
Author(s): Maciej Chyleński, Anna Juras, E Ehler, Helena Malmström, Janusz Piontek, Mattias Jakobsson, Arkadiusz Marciniak, Mirosława Dabert
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0175729

TRE5-A retrotransposition profiling reveals putative RNA polymerase III transcription complex binding sites on the Dictyostelium extrachromosomal rDNA element
Cited by: 3
Author(s): Thomas Spaller, Marco Groth, Gernot Glöckner, Thomas Winckler
Software Mentions: 2
Published: over 7 years ago

10.3390/metabo10050190

JUMPm: A Tool for Large-Scale Identification of Metabolites in Untargeted Metabolomics
Cited by: 6
Author(s): Xusheng Wang, Ji-Hoon Cho, P. Suresh, Yuxin Li, Drew R. Jones, Timothy I. Shaw, Haidong Tan, Boer Xie, Junmin Peng
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0246302

Evaluation of two automated low-cost RNA extraction protocols for SARS-CoV-2 detection
Cited by: 15
Author(s): Fernando Lázaro-Perona, Carlos Rodríguez-Antolín, Marina Alguacil-Guillén, Almudena Gutiérrez-Arroyo, Jesús Mingorance, Julio García-Rodríguez
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2021.567942

Quorum Sensing-Mediated and Growth Phase-Dependent Regulation of Metabolic Pathways in Hafnia alvei H4
Cited by: 7
Author(s): Congyang Yan, Li Xue, Gongliang Zhang, Yaolei Zhu, Jingran Bi, Hongshun Hao, Hongman Hou
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2018.02524

Expression Patterns, Genomic Conservation and Input Into Developmental Regulation of the GGDEF/EAL/HD-GYP Domain Proteins in Streptomyces
Cited by: 31
Author(s): Mahmoud M. Al‐Bassam, Julian Haist, Sara Alina Neumann, Sandra Lindenberg, Natalia Tschowri
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2019.01226

Rapid Multiplex Genotyping of 20 HLA-A*02:01 Restricted Minor Histocompatibility Antigens
Cited by: 6
Author(s): Dmitrii Romaniuk, Anna Postovskaya, Alexandra Khmelevskaya, Dmitry B. Malko, Grigory A. Efimov
Software Mentions: 2
Published: over 5 years ago

10.3389/fnhum.2016.00374

A Direct Cortico-Nigral Pathway as Revealed by Constrained Spherical Deconvolution Tractography in Humans
Cited by: 33
Author(s): Alberto Cacciola, Demetrio Milardi, Giuseppe Anastasi, Gianpaolo Antonio Basile, Pietro Ciolli, Mariangela Irrera, Giuseppina Cutroneo, Daniele Bruschetta, Giuseppina Rizzo, Stefania Mondello, Placido Bramantı, Angelo Quartarone
Software Mentions: 2
Published: over 8 years ago

10.3389/fmed.2014.00027

Patterns of Circulating Inflammatory Biomarkers in Older Persons with Varying Levels of Physical Performance: A Partial Least Squares-Discriminant Analysis Approach
Cited by: 34
Author(s): Emanuele Marzetti, Francesco Landi, Federico Marini, Matteo Cesari, Thomas W. Buford, Todd M. Manini, Graziano Onder, Marco Pahor, Roberto Bernabei, Christiaan Leeuwenburgh, Riccardo Calvani
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2020.598789

Isolation, Characterization and Structure Elucidation of a Novel Lantibiotic From Paenibacillus sp.
Cited by: 10
Author(s): Jerzy Karczewski, Stephen P Krasucki, Papa Nii Asare‐Okai, Carl Diehl, Andrew Friedman, C. M. Brown, Yukari Maezato, Stephen J. Streatfield
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0035888

CRISPR Interference Directs Strand Specific Spacer Acquisition
Cited by: 338
Author(s): Daan C. Swarts, Cas Mosterd, Mark W. J. van Passel, Stan J. J. Brouns
Software Mentions: 2
Published: over 12 years ago

10.3389/fgene.2020.00317

The Evolution of an Invasive Plant, Sorghum halepense L. (‘Johnsongrass’)
Cited by: 27
Author(s): Andrew H. Paterson, Wenqian Kong, Robyn Johnston, Pheonah Nabukalu, Guohong Albert Wu, William L. Poehlman, Valorie H. Goff, Krista Isaacs, Tae‐Ho Lee, Hui Guo, Dong Zhao, U. Uzay Sezen, Megan Kennedy, Diane Bauer, F. Alex Feltus, Eva Weltzien, H. Frederick W. Rattunde, Jacob N. Barney, Kerrie Barry, T. S. Cox, Michael J. Scanlon
Software Mentions: 2
Published: over 4 years ago

10.3390/md15050145

The Venom Repertoire of Conus gloriamaris (Chemnitz, 1777), the Glory of the Sea
Cited by: 26
Author(s): Samuel D. Robinson, Qing Li, Aiping Lu, Pradip K. Bandyopadhyay, Mark Yandell, Baldomero M. Olivera, Helena Safavi-­Hemami
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2020.552971

Identification of Novel BRCA1 and RAD50 Mutations Associated With Breast Cancer Predisposition in Tunisian Patients
Cited by: 9
Author(s): Najah Mighri, Yosr Hamdi, Maroua Boujemaa, Houcemeddine Othman, S. Ben Nasr, Houda El Benna, Nesrine Mejri, Soumaya Labidi, Jihen Ayari, Olfa Jaidene, Hanen Bouaziz, Mariem Ben Rekaya, Ridha Mrad, A. Haddaoui, Khaled Rahal, Hamouda Boussen, Samir Boubaker, Sonia Abdelhak
Software Mentions: 2
Published: about 4 years ago

10.1186/s12864-019-5434-6

Genome-wide systematic characterization of bZIP transcription factors and their expression profiles during seed development and in response to salt stress in peanut
Cited by: 32
Author(s): Zhihui Wang, Liying Yan, Ling‐Shu Wan, Dongxin Huai, Yanping Kang, Lei Shi, Huifang Jiang, Yong Lei, Boshou Liao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2019.00333

Noonan Syndrome in South Africa: Clinical and Molecular Profiles
Cited by: 13
Author(s): Cedrik Tekendo‐Ngongang, Gloudi Agenbag, Christian Domilongo Bope, Alina Esterhuizen, Ambroise Wonkam
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0239287

RNAthor – fast, accurate normalization, visualization and statistical analysis of RNA probing data resolved by capillary electrophoresis
Cited by: 11
Author(s): Julita Gumna, Tomasz Żok, Kacper Figurski, Katarzyna Pachulska-Wieczorek, Marta Szachniuk
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0243759

Exploring the potential effect of paricalcitol on markers of inflammation in de novo renal transplant recipients
Cited by: 1
Author(s): Hege Pihlstrøm, Thor Ueland, Annika E. Michelsen, Pål Aukrust, Franscesca Gatti, Clara Hammarström, Monika Kasprzycka, Junbai Wang, Guttorm Haraldsen, Geir Mjøen, Dag Olav Dahle, Karsten Midtvedt, Ivar Eide, Anders Hartmann, Hallvard Holdaas
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-020-07139-z

Transcriptome analysis reveals molecular mechanisms responsive to acute cold stress in the tropical stenothermal fish tiger barb (Puntius tetrazona)
Cited by: 31
Author(s): Huan Liu, Rong Zhang, Xiaowen Wang, Hua Zhu, Zhixi Tian
Software Mentions: 2
Published: about 4 years ago

10.3389/fnagi.2021.657221

Effective Connectivity During Rest and Music Listening: An EEG Study on Parkinson’s Disease
Cited by: 5
Author(s): Emanuela Maggioni, Federica Arienti, Stella Minella, Francesca Mameli, Linda Borellini, Martina Nigro, F. Cogiamanian, Anna Maria Bianchi, S. Cerutti, S. Barbieri, Paolo Brambilla, Gianluca Ardolino
Software Mentions: 2
Published: over 3 years ago

10.3389/fbioe.2021.644216

Re-routing of Sugar Catabolism Provides a Better Insight Into Fungal Flexibility in Using Plant Biomass-Derived Monomers as Substrates
Cited by: 3
Author(s): Tania Chroumpi, Mao Peng, Lye Meng Markillie, Hugh D. Mitchell, Carrie Nicora, Chelsea Hutchinson, Vanessa Paurus, Nikola Tolić, Chaevien S. Clendinen, Galya Orr, Scott E. Baker, Miia Mäkelä, Ronald P. de Vries
Software Mentions: 2
Published: over 3 years ago

10.1002/2211-5463.12925

Cracking of jujube fruits is associated with differential expression of metabolic genes
Cited by: 5
Author(s): Yaling Liu, Peng-Fei Zhang, Yaping Geng, Xinglong Xie, Pengfei Wen
Software Mentions: 2
Published: over 4 years ago

10.3389/fnagi.2020.599112

Altered Weibull Degree Distribution in Resting-State Functional Brain Networks Is Associated With Cognitive Decline in Mild Cognitive Impairment
Cited by: 1
Author(s): Yifei Zhang, Xiaodan Chen, Xinyuan Liang, Zhijiang Wang, Tian Xie, Xiao Wang, Yuhu Shi, Weiming Zeng, Huali Wang
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0143339

Cortical Components of Reaction-Time during Perceptual Decisions in Humans
Cited by: 32
Author(s): Jacek Dmochowski, Anthony M. Norcia
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0184307

Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages
Cited by: 6
Author(s): Damian Magill, В. Н. Крылов, О. В. Шабурова, John W. McGrath, Christopher C. R. Allen, John P. Quinn, Leonid Kulakov
Software Mentions: 2
Published: about 7 years ago

10.1155/2020/9205197

Comparative Genomics Reveals Pathogenicity-Related Loci in <i>Shewanella algae</i>
Cited by: 3
Author(s): Jui-Hsing Wang, Guo-Cheng He, Yao‐Ting Huang, Po‐Yu Liu
Software Mentions: 2
Published: over 4 years ago

10.12688/f1000research.9765.1

Complete genome of Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins
Cited by: 44
Author(s): Jinhui Shen, Qian Cong, Lisa N. Kinch, Dominika Borek, Zbyszek Otwinowski
Software Mentions: 2
Published: about 8 years ago

10.1002/evl3.81

Positive and balancing selection on<i>SLC18A1</i>gene associated with psychiatric disorders and human-unique personality traits
Cited by: 14
Author(s): Daiki X. Sato, Masakado Kawata
Software Mentions: 2
Published: about 6 years ago

10.1111/febs.14175

An engineered photoswitchable mammalian pyruvate kinase
Cited by: 26
Author(s): Stefanie Gehrig, Jamie A. Macpherson, Paul C. Driscoll, Alastair Symon, Stephen R. Martin, James I. MacRae, Jens Kleinjung, Franca Fraternali, Dimitrios Anastasiou
Software Mentions: 2
Published: over 7 years ago

10.1089/adt.2020.970

A Fully Integrated Assay Panel for Early Drug Metabolism and Pharmacokinetics Profiling
Cited by: 18
Author(s): Johan Wernevik, Fredrik Bergström, Anna Novén, Johan Hulthe, Linda Fredlund, Dan Addison, Jan Holmgren, Per-Erik Strömstedt, Erika Rehnström, Thomas Lundböck
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0068175

The Effects of Threonine Phosphorylation on the Stability and Dynamics of the Central Molecular Switch Region of 18.5-kDa Myelin Basic Protein
Cited by: 36
Author(s): Kenrick A. Vassall, Kyrylo Bessonov, Miguel De Avila, Eugenia Polverini, George Harauz
Software Mentions: 2
Published: over 11 years ago

10.1002/2211-5463.13245

EvoProDom: evolutionary modeling of protein families by assessing translocations of protein domains
Cited by: 0
Author(s): Gon Carmi, Alessandro Gorohovski, Milana Frenkel‐Morgenstern
Software Mentions: 2
Published: over 3 years ago

10.3389/fendo.2019.00293

The Effect of Wnt Pathway Modulators on Human iPSC-Derived Pancreatic Beta Cell Maturation
Cited by: 29
Author(s): Heidrun Vethe, Luiza Ghila, Magnus Berle, Laurence Hoareau, Øystein Ariansen Haaland, Hanne Scholz, João A. Paulo, Simona Chera, Helge Ræder
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-14-916

Comparative inner ear transcriptome analysis between the Rickett’s big-footed bats (Myotis ricketti) and the greater short-nosed fruit bats (Cynopterus sphinx)
Cited by: 23
Author(s): Dong Dong, Ming Lei, Yang Liu, Shuyi Zhang
Software Mentions: 2
Published: almost 12 years ago

10.3389/fpls.2017.00088

Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice
Cited by: 18
Author(s): Wona Ding, Tong HuiShan, Wenjuan Zheng, Jing Ye, Zhichong Pan, B. Zhang, Shihua Zhu
Software Mentions: 2
Published: almost 8 years ago

10.1111/bpa.12664

Diagnostics of pediatric supratentorial RELA ependymomas: integration of information from histopathology, genetics, DNA methylation and imaging
Cited by: 50
Author(s): Mélanie Pagès, Kristian W. Pajtler, Stéphanie Puget, David Castel, Nathalie Boddaert, Arnault Tauziède‐Espariat, Stéphanie Picot, Marie‐Anne Debily, Marcel Kool, David Capper, Christian Sainte‐Rose, Fabrice Chrétien, Stefan M. Pfister, Torsten Pietsch, Jacques Grill, Pascale Varlet, Felipe Andreiuolo
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0141579

Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing
Cited by: 105
Author(s): Sarah M. Hykin, Ke Bi, Jimmy A. McGuire
Software Mentions: 2
Published: about 9 years ago

10.1186/s13628-018-0048-y

Role of protein interactions in stabilizing canonical DNA features in simulations of DNA in crowded environments
Cited by: 6
Author(s): Aslı Yıldırım, Nathalie Brenner, Robert Sutherland, Michael Feig
Software Mentions: 2
Published: almost 6 years ago

10.15252/emmm.201607461

<scp>SPINK</scp>2 deficiency causes infertility by inducing sperm defects in heterozygotes and azoospermia in homozygotes
Cited by: 92
Author(s): Zine‐Eddine Kherraf, Marie Christou‐Kent, Thomas Karaouzène, Amir Amiri‐Yekta, Guillaume Martinez, Alexandra Vargas, Emeline Lambert, Christelle Borel, Béatrice Dorphin, Isabelle Aknin‐Seifer, Michael J. Mitchell, Catherine Metzler‐Guillemain, Jessica Escoffier, Serge Nef, Mariane Grepillat, Nicolas Thierry‐Mieg, Véronique Satre, M. Bailly, Florence Boitrelle, Karin Pernet‐Gallay, Sylviane Hennebicq, Julien Fauré, Serge P. Bottari, Charles Coutton, Pierre F. Ray, Christophe Arnoult
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pntd.0005962

Quantitative multiplexed proteomics of Taenia solium cysts obtained from the skeletal muscle and central nervous system of pigs
Cited by: 12
Author(s): José Navarrete-Perea, Marta Isasa, João A. Paulo, Ricardo Corral-Corral, Jeanette Flores-Bautista, Beatriz Hernández-Téllez, Raúl J. Bobes, Gladis Fragoso, Edda Sciutto, Xavier Soberón, Steven P. Gygi, Juan Pedro Laclette
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-018-4558-4

Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction lines
Cited by: 31
Author(s): Tanya Copley, Marc‐Olivier Duceppe, Louise S. O’Donoughue
Software Mentions: 2
Published: over 6 years ago

10.1002/brb3.579

<scp>fMRI</scp> functional connectivity of the periaqueductal gray in <scp>PTSD</scp> and its dissociative subtype
Cited by: 85
Author(s): Sherain Harricharan, Daniela Rabellino, Paul A. Frewen, Maria Densmore, Jean Théberge, Margaret C. McKinnon, Allan N. Schore, Ruth A. Lanius
Software Mentions: 2
Published: about 8 years ago

10.1186/2049-2618-1-30

Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third week of life
Cited by: 52
Author(s): Christopher T. Brown, Itai Sharon, Brian C. Thomas, Cindy J. Castelle, Michael J. Morowitz, Jillian F. Banfield
Software Mentions: 2
Published: almost 11 years ago

10.1186/s40658-015-0132-1

Performance evaluation of the Biograph mCT Flow PET/CT system according to the NEMA NU2-2012 standard
Cited by: 93
Author(s): Ivo Rausch, Jacobo Cal-González, David Dapra, H.-J. Gallowitsch, Peter Lind, Thomas Beyer, Gregory Minear
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pgen.1006985

CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart
Cited by: 45
Author(s): Melisa Gómez-Velázquez, Claudio Badía-Careaga, Ana Victoria Lechuga‐Vieco, Rocío Nieto-Arellano, Juan J. Tena, Isabel Rollán, Alba Álvarez, Carlos Torroja, Eva F. Caceres, Anna Roy, Niels Galjart, Paul Delgado-Olguı́n, Fátima Sánchez‐Cabo, José Antonio Enrı́quez, José Luis Gómez‐Skarmeta, Miguel Manzanares
Software Mentions: 2
Published: about 7 years ago