Projects: pypi: hic2cool
https://packages.ecosyste.ms/registries/pypi.org/packages/hic2cool
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (for cooler). Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as an imported package or a stand-alone Python tool for command line conversion.
26 versions
Latest release: about 6 years ago
824 downloads last month
Enhanced Analysis
Educational Contributors:
carl_vitzthum@hms.harvard.edu
burak_alver@hms.harvard.edu
Repository Activity:
Repository Owner:
4D Nucleome Data Coordination and Integration Center (organization)
Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+40
Educational commit emails
2 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+4
Science terms in README
2 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning hic2cool 2
10.3389/fgene.2021.673530
Profiling of 3D Genome Organization in Nasopharyngeal Cancer Needle Biopsy Patient Samples by a Modified Hi-C ApproachCited by: 3
Author(s): Sambhavi Animesh, Ruchi Choudhary, Bertrand Jern Han Wong, Charlotte Tze Jia Koh, Xin Yi Ng, J. S. H. Tay, Wan-Qin Chong, Jian Han, Leilei Chen, Boon Cher Goh, Melissa J. Fullwood
Software Mentions: 6
Published: almost 5 years ago
10.1038/s42003-021-02501-7
Phase separation of Epstein-Barr virus EBNA2 protein reorganizes chromatin topology for epigenetic regulationCited by: 12
Author(s): Yiting Yang, Xidong Ye, Ranran Dai, Zhaoqiang Li, Yan Zhang, Wei Xue, Yafang Zhu, Delong Feng, Litao Qin, Xin Wang, Bo Lei, Shixiu Liao, Bingtao Hao
Software Mentions: 5
Published: almost 5 years ago