Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: grid
https://packages.ecosyste.ms/registries/pypi.org/packages/grid
Volumetric data module
28 versions
Latest release: over 10 years ago
426 downloads last month
Papers Mentioning grid 137
10.3389/fphys.2017.00661
The Gly16 Allele of the G16R Single Nucleotide Polymorphism in the β2-Adrenergic Receptor Gene Augments the Glycemic Response to Adrenaline in HumansCited by: 6
Author(s): Kim Zillo Rokamp, Jonatan Myrup Staalsø, Morten Zaar, P Rasmussen, Lonnie G. Petersen, Rikke Vibeke Nielsen, Niels H. Secher, Niels Vidiendal Olsen, Henning Bay Nielsen
Software Mentions: 5
Published: about 7 years ago
10.3389/fmolb.2021.621232
Six Metabolism Related mRNAs Predict the Prognosis of Patients With Hepatocellular CarcinomaCited by: 6
Author(s): Xiwen Wu, Tian Lan, Muqi Li, Junfeng Liu, Xukun Wu, Shunli Shen, Wei Chen, Baogang Peng
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2018.01451
Association Between Gut Microbiota and CD4 Recovery in HIV-1 Infected PatientsCited by: 86
Author(s): Wei Lü, Yuqing Feng, Fanhui Jing, Yang Han, Na Lyu, Fei Liu, Jing Li, Xiaojing Song, Jing Xie, Zhifeng Qiu, Ting Zhu, Bertrand Routy, Jean‐Pierre Routy, Taisheng Li, Baoli Zhu
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0141719
Potential Compounds for Oral Cancer Treatment: Resveratrol, Nimbolide, Lovastatin, Bortezomib, Vorinostat, Berberine, Pterostilbene, Deguelin, Andrographolide, and ColchicineCited by: 37
Author(s): Saurabh Bundela, Anjana Sharma, Prakash S. Bisen
Software Mentions: 4
Published: about 9 years ago
10.3389/fmicb.2015.00573
Revealing the unexplored fungal communities in deep groundwater of crystalline bedrock fracture zones in Olkiluoto, FinlandCited by: 63
Author(s): Elina Sohlberg, Malin Bomberg, Hanna Miettinen, Mari Nyyssönen, Heikki Salavirta, Minna Vikman, Merja Itävaara
Software Mentions: 4
Published: over 9 years ago
10.1080/21655979.2020.1864912
Analysis of Collagen type X alpha 1 (COL10A1) expression and prognostic significance in gastric cancer based on bioinformaticsCited by: 33
Author(s): Shuai Chen, Wei Yi, Hanyang Liu, Yu Gong, Yan Zhou, Haojun Yang, Liming Tang
Software Mentions: 4
Published: almost 4 years ago
10.3389/fpls.2020.00912
More Filtering on SNP Calling Does Not Remove Evidence of Inter-Nucleus Recombination in Dikaryotic Arbuscular Mycorrhizal FungiCited by: 6
Author(s): Eric C. Chen, Stephanie Mathieu, Anne Hoffrichter, Jeanne Ropars, Steven Dreißig, Joerg Fuchs, Andreas Brachmann, Nicolas Corradi
Software Mentions: 4
Published: over 4 years ago
10.3390/genes10070554
Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3)Cited by: 17
Author(s): Guoliang Li, Tongkai Sun, Huidan Chang, Liuyang Cai, Hong Pan, Qiangwei Zhou
Software Mentions: 4
Published: over 5 years ago
10.1111/jcmm.14045
Inhibition of miR-148a-3p resists hepatocellular carcinoma progress of hepatitis C virus infection through suppressing<i>c-Jun</i>and MAPK pathwayCited by: 27
Author(s): Yibin Deng, Jianchu Wang, Meijin Huang, Guidan Xu, Wujun Wei, Houji Qin
Software Mentions: 4
Published: almost 6 years ago
10.3390/ijms21093187
Season Affects Yield and Metabolic Profiles of Rice (Oryza sativa) under High Night Temperature Stress in the FieldCited by: 18
Author(s): Stephanie Schaarschmidt, Lovely Mae F Lawas, Ulrike Glaubitz, Xia Li, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Dirk K. Hincha, Ellen Zuther
Software Mentions: 4
Published: over 4 years ago
10.1186/s12859-016-1345-6
SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identificationCited by: 18
Author(s): João Victor de Araújo Oliveira, Fabrizio Costa, Rolf Backofen, Peter F. Stadler, Maria Emília M. T. Walter, Jana Hertel
Software Mentions: 3
Published: almost 8 years ago
10.1186/s12859-016-1008-7
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulinCited by: 2
Author(s): Rob Patro, Raquel Norel, Robert J. Prill, Julio Sáez-Rodríguez, Peter Lorenz, Felix Steinbeck, Bjoern Ziems, Mitja Luštrek, Nicola Barbarini, Alessandra Tiengo, Riccardo Bellazzi, Hans‐Jürgen Thiesen, Gustavo Stolovitzky, Carl Kingsford
Software Mentions: 3
Published: over 8 years ago
10.1038/s41598-019-56878-x
Delineation of hypoxia-induced proteome shifts in osteosarcoma cells with different metastatic propensitiesCited by: 16
Author(s): Zifeng Song, Martin C. Pearce, Yuan Jiang, Liping Yang, Cheri P. Goodall, Cristobal L. Miranda, Milan Milovancev, Shay Bracha, Siva Kumar Kolluri, Claudia S. Maier
Software Mentions: 3
Published: almost 5 years ago
10.1007/s41048-016-0033-4
MetaDP: a comprehensive web server for disease prediction of 16S rRNA metagenomic datasetsCited by: 9
Author(s): Xilin Xu, Aiping Wu, Xinlei Zhang, Mingming Su, Taijiao Jiang, Zheming Yuan
Software Mentions: 3
Published: almost 8 years ago
10.3389/fmicb.2020.00551
Crosstalk Between Female Gonadal Hormones and Vaginal Microbiota Across Various Phases of Women’s Gynecological LifecycleCited by: 51
Author(s): Harrisham Kaur, Mitali Merchant, Mohammed Monzoorul Haque, Sharmila S. Mande
Software Mentions: 3
Published: over 4 years ago
10.1186/s10020-020-00261-4
Inhibition of mitochondrial carrier homolog 2 (MTCH2) suppresses tumor invasion and enhances sensitivity to temozolomide in malignant gliomaCited by: 6
Author(s): Qiuyun Yuan, Wanchun Yang, Shuxin Zhang, Tengfei Li, Mingrong Zuo, Xingwang Zhou, Junhong Li, Mao Li, Xiaoqiang Xia, Mina Chen, Yan‐Hui Liu
Software Mentions: 3
Published: almost 4 years ago
10.3389/fmicb.2018.00971
Characterization of Microcystis (Cyanobacteria) Genotypes Based on the Internal Transcribed Spacer Region of rRNA by Next-Generation SequencingCited by: 13
Author(s): Da Huo, Youxin Chen, Tao Zheng, Liu Xiang, Xinyue Zhang, Ge Yu, Zhiyi Qiao, Renhui Li
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-021-98951-4
Presence of distinctive microbiome in the first-pass meconium of newborn infantsCited by: 9
Author(s): Jenni Turunen, Mysore V. Tejesvi, Niko Paalanne, Jenni Hekkala, Outi Lindgren, Mika Kaakinen, Tytti Pokka, Anna Kaisanlahti, Justus Reunanen, Terhi Tapiainen
Software Mentions: 3
Published: about 3 years ago
10.18632/oncotarget.12430
Automated analysis of acute myeloid leukemia minimal residual disease using a support vector machineCited by: 21
Author(s): Wanmao Ni, Beili Hu, Cuiping Zheng, Tong Yin, Lei Wang, Qing Li, Xiangmin Tong, Yong Han
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0130200
Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary StructuresCited by: 26
Author(s): Yinghan Fu, Zhenjiang Zech Xu, Zhi John Lu, Shan Zhao, David H. Mathews
Software Mentions: 2
Published: over 9 years ago
10.1186/1758-2946-6-11
On the validity versus utility of activity landscapes: are all activity cliffs statistically significant?Cited by: 9
Author(s): Rajarshi Guha, José L. Medina-Franco
Software Mentions: 2
Published: over 10 years ago
10.3897/BDJ.9.e67677
Morphometric variation in wolves and golden jackal in India (Mammalia, Carnivora)Cited by: 5
Author(s): Yellapu Srinivas, Yadvendradev V. Jhala
Software Mentions: 2
Published: about 3 years ago
10.3390/cells7110216
Synthesis and Biological Evaluation of Novel Triple-Modified Colchicine Derivatives as Potent Tubulin-Targeting Anticancer AgentsCited by: 22
Author(s): Urszula Majcher, Greta Klejborowska, Magdalena Kaik, Ewa Maj, Joanna Wietrzyk, Mahshad Moshari, Jordane Preto, Jack A. Tuszyński, Adam Huczyński
Software Mentions: 2
Published: about 6 years ago
10.3389/fphys.2018.00182
Symptoms of Anxiety and Depression in Young Athletes Using the Hospital Anxiety and Depression ScaleCited by: 38
Author(s): Stephanie Weber, Christian Puta, Melanie Lesinski, Brunhild Gabriel, Thomas Steidten, Karl Jürgen Bär, Marco Herbsleb, Urs Granacher, Holger Gabriel
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0185146
Individual differences in responsivity to social rewards: Insights from two eye-tracking tasksCited by: 12
Author(s): Bhismadev Chakrabarti, Anthony Haffey, Loredana Canzano, Christopher Taylor, Eugene McSorley
Software Mentions: 2
Published: about 7 years ago
10.1186/s13765-020-00564-4
Screening marine algae metabolites as high-affinity inhibitors of SARS-CoV-2 main protease (3CLpro): an in silico analysis to identify novel drug candidates to combat COVID-19 pandemicCited by: 22
Author(s): Ghazala Muteeb, Adil Alshoaibi, Mohammad Aatif, Tabish Rehman, M. Zuhaib Qayyum
Software Mentions: 2
Published: about 4 years ago
10.1128/JVI.00676-19
Identification of Ebola Virus Inhibitors Targeting GP2 Using Principles of Molecular MimicryCited by: 12
Author(s): Courtney D Singleton, Monica S. Humby, Hyun Yi, Robert C. Rizzo, Amy Jacobs
Software Mentions: 2
Published: over 5 years ago
10.15256/joc.2016.6.66
Development of the C4 Inventory: A Measure of Common Characteristics that Complicate Care in Outpatient PsychiatryCited by: 3
Author(s): Robert G. Maunder, Lesley Wiesenfeld, Sian Rawkins, Jamie Park
Software Mentions: 1
Published: almost 9 years ago
10.1186/1479-5868-10-132
Development of HomeSTEAD’s physical activity and screen time physical environment inventoryCited by: 22
Author(s): Derek Hales, Amber Vaughn, Stephanie Mazzucca, Maria Bryant, Rachel G. Tabak, Christina McWilliams, June Stevens, Dianne S. Ward
Software Mentions: 1
Published: almost 11 years ago
10.1186/s12935-021-01760-y
Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinomaCited by: 11
Author(s): Jun Ma, Xiaochuan Chen, Mingqiang Lin, Zhiping Wang, Yahua Wu, Jiancheng Li
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.mex.2021.101471
ReSVA: A MATLAB method to co-register and mosaic airborne video-based remotely sensed dataCited by: 0
Author(s): Tomas Naprstek, J. Pablo Arroyo‐Mora, Joshua M. Johnston, George Leblanc
Software Mentions: 1
Published: almost 4 years ago
10.1155/2008/874075
Immunohistochemical Estimates of Angiogenesis, Proliferative Activity, p53 Expression, and Multiple Drug Resistance Have No Prognostic Impact in Osteosarcoma: A Comparative Clinicopathological InvestigationCited by: 12
Author(s): Flemming Brandt Sørensen, Kenneth Jensen, Michael Væth, Henrik Hager, Anette Md Funder, Akmal Safwat, Johnny Keller, Mariann Christensen
Software Mentions: 1
Published: almost 17 years ago
10.1186/1752-153X-4-S1-S2
An open source multistep model to predict mutagenicity from statistical analysis and relevant structural alertsCited by: 69
Author(s): Thomas Ferrari, Giuseppina Gini
Software Mentions: 1
Published: over 14 years ago
10.1016/j.expneurol.2017.01.010
Transplantation site influences the phenotypic differentiation of dopamine neurons in ventral mesencephalic grafts in Parkinsonian ratsCited by: 9
Author(s): Marija Fjodorova, Eduardo Miguel Torres, Stephen B. Dunnett
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2474-13-53
Local biochemical and morphological differences in human Achilles tendinopathy: a case control studyCited by: 49
Author(s): Jessica Pingel, Ulrich Fredberg, Klaus Qvortrup, Larsen Jo, Peter Schjerling, Katja Maria Heinemeier, Michael Kjær, Henning Langberg
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0105563
An Efficient Approach for Differentiating Alzheimer's Disease from Normal Elderly Based on Multicenter MRI Using Gray-Level Invariant FeaturesCited by: 19
Author(s): Muwei Li, Kenichi Oishi, Xiaohai He, Yuanyuan Qin, Fei Gao, Susumu Mori
Software Mentions: 1
Published: over 10 years ago
10.1186/s12967-019-2057-2
Discrimination of indoor versus outdoor environmental state with machine learning algorithms in myopia observational studiesCited by: 10
Author(s): Bin Ye, Kangping Liu, Siting Cao, Padmaja Sankaridurg, Wayne Li, Mengli Luan, Bo Zhang, Jianfeng Zhu, Haidong Zou, Xun Xu, Xiangui He
Software Mentions: 1
Published: about 5 years ago