Ecosyste.ms: Papers

10.3389/fphys.2017.00661

The Gly16 Allele of the G16R Single Nucleotide Polymorphism in the β2-Adrenergic Receptor Gene Augments the Glycemic Response to Adrenaline in Humans
Cited by: 6
Author(s): Kim Zillo Rokamp, Jonatan Myrup Staalsø, Morten Zaar, P Rasmussen, Lonnie G. Petersen, Rikke Vibeke Nielsen, Niels H. Secher, Niels Vidiendal Olsen, Henning Bay Nielsen
Software Mentions: 5
Published: about 7 years ago

10.3389/fmolb.2021.621232

Six Metabolism Related mRNAs Predict the Prognosis of Patients With Hepatocellular Carcinoma
Cited by: 6
Author(s): Xiwen Wu, Tian Lan, Muqi Li, Junfeng Liu, Xukun Wu, Shunli Shen, Wei Chen, Baogang Peng
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2018.01451

Association Between Gut Microbiota and CD4 Recovery in HIV-1 Infected Patients
Cited by: 86
Author(s): Wei Lü, Yuqing Feng, Fanhui Jing, Yang Han, Na Lyu, Fei Liu, Jing Li, Xiaojing Song, Jing Xie, Zhifeng Qiu, Ting Zhu, Bertrand Routy, Jean‐Pierre Routy, Taisheng Li, Baoli Zhu
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0141719

Potential Compounds for Oral Cancer Treatment: Resveratrol, Nimbolide, Lovastatin, Bortezomib, Vorinostat, Berberine, Pterostilbene, Deguelin, Andrographolide, and Colchicine
Cited by: 37
Author(s): Saurabh Bundela, Anjana Sharma, Prakash S. Bisen
Software Mentions: 4
Published: about 9 years ago

10.3389/fmicb.2015.00573

Revealing the unexplored fungal communities in deep groundwater of crystalline bedrock fracture zones in Olkiluoto, Finland
Cited by: 63
Author(s): Elina Sohlberg, Malin Bomberg, Hanna Miettinen, Mari Nyyssönen, Heikki Salavirta, Minna Vikman, Merja Itävaara
Software Mentions: 4
Published: over 9 years ago

10.1080/21655979.2020.1864912

Analysis of Collagen type X alpha 1 (COL10A1) expression and prognostic significance in gastric cancer based on bioinformatics
Cited by: 33
Author(s): Shuai Chen, Wei Yi, Hanyang Liu, Yu Gong, Yan Zhou, Haojun Yang, Liming Tang
Software Mentions: 4
Published: almost 4 years ago

10.3389/fpls.2020.00912

More Filtering on SNP Calling Does Not Remove Evidence of Inter-Nucleus Recombination in Dikaryotic Arbuscular Mycorrhizal Fungi
Cited by: 6
Author(s): Eric C. Chen, Stephanie Mathieu, Anne Hoffrichter, Jeanne Ropars, Steven Dreißig, Joerg Fuchs, Andreas Brachmann, Nicolas Corradi
Software Mentions: 4
Published: over 4 years ago

10.3390/genes10070554

Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3)
Cited by: 17
Author(s): Guoliang Li, Tongkai Sun, Huidan Chang, Liuyang Cai, Hong Pan, Qiangwei Zhou
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.14045

Inhibition of miR-148a-3p resists hepatocellular carcinoma progress of hepatitis C virus infection through suppressing<i>c-Jun</i>and MAPK pathway
Cited by: 27
Author(s): Yibin Deng, Jianchu Wang, Meijin Huang, Guidan Xu, Wujun Wei, Houji Qin
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijms21093187

Season Affects Yield and Metabolic Profiles of Rice (Oryza sativa) under High Night Temperature Stress in the Field
Cited by: 18
Author(s): Stephanie Schaarschmidt, Lovely Mae F Lawas, Ulrike Glaubitz, Xia Li, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Dirk K. Hincha, Ellen Zuther
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-016-1345-6

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification
Cited by: 18
Author(s): João Victor de Araújo Oliveira, Fabrizio Costa, Rolf Backofen, Peter F. Stadler, Maria Emília M. T. Walter, Jana Hertel
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12859-016-1008-7

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin
Cited by: 2
Author(s): Rob Patro, Raquel Norel, Robert J. Prill, Julio Sáez-Rodríguez, Peter Lorenz, Felix Steinbeck, Bjoern Ziems, Mitja Luštrek, Nicola Barbarini, Alessandra Tiengo, Riccardo Bellazzi, Hans‐Jürgen Thiesen, Gustavo Stolovitzky, Carl Kingsford
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-019-56878-x

Delineation of hypoxia-induced proteome shifts in osteosarcoma cells with different metastatic propensities
Cited by: 16
Author(s): Zifeng Song, Martin C. Pearce, Yuan Jiang, Liping Yang, Cheri P. Goodall, Cristobal L. Miranda, Milan Milovancev, Shay Bracha, Siva Kumar Kolluri, Claudia S. Maier
Software Mentions: 3
Published: almost 5 years ago

10.1007/s41048-016-0033-4

MetaDP: a comprehensive web server for disease prediction of 16S rRNA metagenomic datasets
Cited by: 9
Author(s): Xilin Xu, Aiping Wu, Xinlei Zhang, Mingming Su, Taijiao Jiang, Zheming Yuan
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2020.00551

Crosstalk Between Female Gonadal Hormones and Vaginal Microbiota Across Various Phases of Women’s Gynecological Lifecycle
Cited by: 51
Author(s): Harrisham Kaur, Mitali Merchant, Mohammed Monzoorul Haque, Sharmila S. Mande
Software Mentions: 3
Published: over 4 years ago

10.1186/s10020-020-00261-4

Inhibition of mitochondrial carrier homolog 2 (MTCH2) suppresses tumor invasion and enhances sensitivity to temozolomide in malignant glioma
Cited by: 6
Author(s): Qiuyun Yuan, Wanchun Yang, Shuxin Zhang, Tengfei Li, Mingrong Zuo, Xingwang Zhou, Junhong Li, Mao Li, Xiaoqiang Xia, Mina Chen, Yan‐Hui Liu
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2018.00971

Characterization of Microcystis (Cyanobacteria) Genotypes Based on the Internal Transcribed Spacer Region of rRNA by Next-Generation Sequencing
Cited by: 13
Author(s): Da Huo, Youxin Chen, Tao Zheng, Liu Xiang, Xinyue Zhang, Ge Yu, Zhiyi Qiao, Renhui Li
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-98951-4

Presence of distinctive microbiome in the first-pass meconium of newborn infants
Cited by: 9
Author(s): Jenni Turunen, Mysore V. Tejesvi, Niko Paalanne, Jenni Hekkala, Outi Lindgren, Mika Kaakinen, Tytti Pokka, Anna Kaisanlahti, Justus Reunanen, Terhi Tapiainen
Software Mentions: 3
Published: about 3 years ago

10.18632/oncotarget.12430

Automated analysis of acute myeloid leukemia minimal residual disease using a support vector machine
Cited by: 21
Author(s): Wanmao Ni, Beili Hu, Cuiping Zheng, Tong Yin, Lei Wang, Qing Li, Xiangmin Tong, Yong Han
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0130200

Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures
Cited by: 26
Author(s): Yinghan Fu, Zhenjiang Zech Xu, Zhi John Lu, Shan Zhao, David H. Mathews
Software Mentions: 2
Published: over 9 years ago

10.1186/1758-2946-6-11

On the validity versus utility of activity landscapes: are all activity cliffs statistically significant?
Cited by: 9
Author(s): Rajarshi Guha, José L. Medina-Franco
Software Mentions: 2
Published: over 10 years ago

10.3897/BDJ.9.e67677

Morphometric variation in wolves and golden jackal in India (Mammalia, Carnivora)
Cited by: 5
Author(s): Yellapu Srinivas, Yadvendradev V. Jhala
Software Mentions: 2
Published: about 3 years ago

10.3390/cells7110216

Synthesis and Biological Evaluation of Novel Triple-Modified Colchicine Derivatives as Potent Tubulin-Targeting Anticancer Agents
Cited by: 22
Author(s): Urszula Majcher, Greta Klejborowska, Magdalena Kaik, Ewa Maj, Joanna Wietrzyk, Mahshad Moshari, Jordane Preto, Jack A. Tuszyński, Adam Huczyński
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphys.2018.00182

Symptoms of Anxiety and Depression in Young Athletes Using the Hospital Anxiety and Depression Scale
Cited by: 38
Author(s): Stephanie Weber, Christian Puta, Melanie Lesinski, Brunhild Gabriel, Thomas Steidten, Karl Jürgen Bär, Marco Herbsleb, Urs Granacher, Holger Gabriel
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0185146

Individual differences in responsivity to social rewards: Insights from two eye-tracking tasks
Cited by: 12
Author(s): Bhismadev Chakrabarti, Anthony Haffey, Loredana Canzano, Christopher Taylor, Eugene McSorley
Software Mentions: 2
Published: about 7 years ago

10.1186/s13765-020-00564-4

Screening marine algae metabolites as high-affinity inhibitors of SARS-CoV-2 main protease (3CLpro): an in silico analysis to identify novel drug candidates to combat COVID-19 pandemic
Cited by: 22
Author(s): Ghazala Muteeb, Adil Alshoaibi, Mohammad Aatif, Tabish Rehman, M. Zuhaib Qayyum
Software Mentions: 2
Published: almost 4 years ago

10.1128/JVI.00676-19

Identification of Ebola Virus Inhibitors Targeting GP2 Using Principles of Molecular Mimicry
Cited by: 12
Author(s): Courtney D Singleton, Monica S. Humby, Hyun Yi, Robert C. Rizzo, Amy Jacobs
Software Mentions: 2
Published: over 5 years ago

10.15256/joc.2016.6.66

Development of the C4 Inventory: A Measure of Common Characteristics that Complicate Care in Outpatient Psychiatry
Cited by: 3
Author(s): Robert G. Maunder, Lesley Wiesenfeld, Sian Rawkins, Jamie Park
Software Mentions: 1
Published: almost 9 years ago

10.1186/1479-5868-10-132

Development of HomeSTEAD’s physical activity and screen time physical environment inventory
Cited by: 22
Author(s): Derek Hales, Amber Vaughn, Stephanie Mazzucca, Maria Bryant, Rachel G. Tabak, Christina McWilliams, June Stevens, Dianne S. Ward
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12935-021-01760-y

Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinoma
Cited by: 11
Author(s): Jun Ma, Xiaochuan Chen, Mingqiang Lin, Zhiping Wang, Yahua Wu, Jiancheng Li
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.mex.2021.101471

ReSVA: A MATLAB method to co-register and mosaic airborne video-based remotely sensed data
Cited by: 0
Author(s): Tomas Naprstek, J. Pablo Arroyo‐Mora, Joshua M. Johnston, George Leblanc
Software Mentions: 1
Published: almost 4 years ago

10.1155/2008/874075

Immunohistochemical Estimates of Angiogenesis, Proliferative Activity, p53 Expression, and Multiple Drug Resistance Have No Prognostic Impact in Osteosarcoma: A Comparative Clinicopathological Investigation
Cited by: 12
Author(s): Flemming Brandt Sørensen, Kenneth Jensen, Michael Væth, Henrik Hager, Anette Md Funder, Akmal Safwat, Johnny Keller, Mariann Christensen
Software Mentions: 1
Published: almost 17 years ago

10.1186/1752-153X-4-S1-S2

An open source multistep model to predict mutagenicity from statistical analysis and relevant structural alerts
Cited by: 69
Author(s): Thomas Ferrari, Giuseppina Gini
Software Mentions: 1
Published: over 14 years ago

10.1016/j.expneurol.2017.01.010

Transplantation site influences the phenotypic differentiation of dopamine neurons in ventral mesencephalic grafts in Parkinsonian rats
Cited by: 9
Author(s): Marija Fjodorova, Eduardo Miguel Torres, Stephen B. Dunnett
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2474-13-53

Local biochemical and morphological differences in human Achilles tendinopathy: a case control study
Cited by: 49
Author(s): Jessica Pingel, Ulrich Fredberg, Klaus Qvortrup, Larsen Jo, Peter Schjerling, Katja Maria Heinemeier, Michael Kjær, Henning Langberg
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0105563

An Efficient Approach for Differentiating Alzheimer's Disease from Normal Elderly Based on Multicenter MRI Using Gray-Level Invariant Features
Cited by: 19
Author(s): Muwei Li, Kenichi Oishi, Xiaohai He, Yuanyuan Qin, Fei Gao, Susumu Mori
Software Mentions: 1
Published: about 10 years ago

10.1186/s12967-019-2057-2

Discrimination of indoor versus outdoor environmental state with machine learning algorithms in myopia observational studies
Cited by: 10
Author(s): Bin Ye, Kangping Liu, Siting Cao, Padmaja Sankaridurg, Wayne Li, Mengli Luan, Bo Zhang, Jianfeng Zhu, Haidong Zou, Xun Xu, Xiangui He
Software Mentions: 1
Published: about 5 years ago