Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: gmx

https://packages.ecosyste.ms/registries/pypi.org/packages/gmx

GROMACS Python module
2 versions
Latest release: almost 3 years ago
39 downloads last month

Papers Mentioning gmx 108

10.1371/journal.ppat.1008342
Structure and functional analysis of the Legionella pneumophila chitinase ChiA reveals a novel mechanism of metal-dependent mucin degradation
Cited by: 27
Author(s): Saima Rehman, Lubov S. Grigoryeva, Katherine H. Richardson, Paula M. Corsini, Richard C. White, Rosie Shaw, Theo Portlock, Benjamin Dorgan, Zeinab S. Zanjani, Arianna Fornili, Nicholas P. Cianciotto, James A. Garnett
Software Mentions: 1
Published: over 4 years ago
10.3390/polym11111775
Transport Properties of Thermoplastic R-BAPB Polyimide: Molecular Dynamics Simulations and Experiment
Cited by: 15
Author(s): Igor V. Volgin, Maria V. Andreeva, Sergey V. Larin, А. Л. Диденко, G. V. Vaganov, Ilya L. Borisov, А. В. Волков, Leonid I. Klushin
Software Mentions: 1
Published: about 5 years ago
10.3390/polym13111840
Structural and Energetic Affinity of Annocatacin B with ND1 Subunit of the Human Mitochondrial Respiratory Complex I as a Potential Inhibitor: An In Silico Comparison Study with the Known Inhibitor Rotenone
Cited by: 2
Author(s): Camilo Febres-Molina, Jorge Alberto Aguilar-Pineda, Pamela L. Gamero-Begazo, Haruna Luz Barazorda-Ccahuana, Diego Ernesto Valencia, Karin J Vera-López, Gonzalo Davila Del-Carpio, Badhin Gómez
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2018.00351
Seed Extract of Psoralea corylifolia and Its Constituent Bakuchiol Impairs AHL-Based Quorum Sensing and Biofilm Formation in Food- and Human-Related Pathogens
Cited by: 23
Author(s): Fohad Mabood Husain, Iqbal Ahmad, Faez Iqbal Khan, Nasser Abdulatif Al‐Shabib, Mohammad Hassan Baig, Afzal Hussain, Tabish Rehman, Mohamed F. Alajmi, Kevin A. Lobb
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms21134602
Martini Coarse-Grained Model of Hyaluronic Acid for the Structural Change of Its Gel in the Presence of Monovalent and Divalent Salts
Cited by: 12
Author(s): Raj Kumar, Young Kyu Lee, Yong Seok Jho
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms21145061
Role of Tyr-39 for the Structural Features of α-Synuclein and for the Interaction with a Strong Modulator of Its Amyloid Assembly
Cited by: 4
Author(s): Oscar Palomino‐Hernandez, Fiamma A Buratti, Pamela Sacco, Giulia Rossetti, Paolo Carloni, Claudio O. Fernández
Software Mentions: 1
Published: over 4 years ago
10.1186/s13065-021-00735-4
Novel pH-responsive nanohybrid for simultaneous delivery of doxorubicin and paclitaxel: an in-silico insight
Cited by: 9
Author(s): Ehsan Alimohammadi, Reza Maleki, Hossein Akbarialiabad, Mohammad Dahri
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcell.2020.581016
Understanding the Functional Properties of Lipid Heterogeneity in Pulmonary Surfactant Monolayers at the Atomistic Level
Cited by: 14
Author(s): Juho Liekkinen, B. Moreno, Riku O. Paananen, Ilpo Vattulainen, Luca Monticelli, Jorge Bernardino de la Serna, Matti Javanainen
Software Mentions: 1
Published: about 4 years ago