Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: glmnet

https://packages.ecosyste.ms/registries/pypi.org/packages/glmnet

Python wrapper for glmnet
5 versions
Latest release: over 4 years ago
3 dependent packages
3,992 downloads last month

Papers Mentioning glmnet 1,607

10.1038/s41598-019-53811-0
An integrated nomogram combining lncRNAs classifier and clinicopathologic factors to predict the recurrence of head and neck squamous cell carcinoma
Cited by: 4
Author(s): Jie Cui, Qingquan Wen, Xiaojie Tan, Jinsong Piao, Qiong Zhang, Qian Wang, Lizhen He, Yan Wang, Zhe Chen, Genglong Liu
Software Mentions: 5
Published: almost 5 years ago
10.3389/fgene.2020.522383
Survival-Associated Alternative Splicing Events and Prognostic Signatures in Pancreatic Cancer
Cited by: 5
Author(s): Lichao Xu, Jianji Pan, Yanni Ding, Hongda Pan
Software Mentions: 5
Published: about 4 years ago
10.3389/fonc.2021.588811
Identification of Five Glycolysis-Related Gene Signature and Risk Score Model for Colorectal Cancer
Cited by: 22
Author(s): Zhu Jun, Shuai Wang, Han Bai, Ke Wang, Jun Hao, Jian Zhang, Jipeng Li
Software Mentions: 5
Published: over 3 years ago
10.3390/ani10071182
Predicting Ewe Body Condition Score Using Lifetime Liveweight and Liveweight Change, and Previous Body Condition Score Record
Cited by: 5
Author(s): Jimmy Semakula, René A. Corner-Thomas, S. T. Morris, Hugh T. Blair, P. R. Kenyon
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-019-44254-8
Honey bee predisposition of resistance to ubiquitous mite infestations
Cited by: 17
Author(s): Bart J. G. Broeckx, Lina De Smet, T. Blacquière, Kevin Maebe, Mikalai Khalenkow, Mario Van Poucke, Bjørn Dahle, Peter Neumann, Kim B. Nguyen, Guy Smagghe, Dieter Deforce, Filip Van Nieuwerburgh, Luc Peelman, Dirk C. de Graaf
Software Mentions: 5
Published: over 5 years ago
10.1186/s13148-018-0588-7
Analysis of repeated leukocyte DNA methylation assessments reveals persistent epigenetic alterations after an incident myocardial infarction
Cited by: 18
Author(s): Cavin Ward‐Caviness, Golareh Agha, Brian H. Chen, Liliane Pfeiffer, Rory Wilson, Peter Wolf, Christian Gieger, Joel Schwartz, Pantel Vokonas, Lifang Hou, Allan C. Just, Stefania Bandinelli, Dena G. Hernandez, Andrew B. Singleton, Holger Prokisch, Thomas Meitinger, Gabi Kastenmüller, Luigi Ferrucci, Andrea A. Baccarelli, Mélanie Waldenberger, Annette Peters
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12935-019-1002-z
Two predictive precision medicine tools for hepatocellular carcinoma
Cited by: 11
Author(s): Zhiqiao Zhang, Jing Li, Tingshan He, Yanling Ouyang, Yiyan Huang, Qingbo Liu, Peng Wang, Jianqiang Ding
Software Mentions: 5
Published: about 5 years ago
10.18632/aging.202801
The construction and analysis of a ferroptosis-related gene prognostic signature for pancreatic cancer
Cited by: 26
Author(s): Pei-Cheng Jiang, Feng Yang, Caifeng Zou, Tianyuan Bao, Mengmeng Wu, Dongqin Yang, Shurui Bu
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-019-46789-2
Resting-state prefrontal EEG biomarkers in correlation with MMSE scores in elderly individuals
Cited by: 38
Author(s): Jung-Mi Choi, Boncho Ku, Young Gooun You, Miok Jo, Minji Kwon, Youyoung Choi, Segyeong Jung, Soyoung Ryu, Eunjeong Park, Ho-Yeon Go, Gahye Kim, Wonseok Cha, Jaeuk U. Kim
Software Mentions: 5
Published: over 5 years ago
10.1038/cr.2017.121
5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic biomarkers for human cancers
Cited by: 229
Author(s): Wenshuai Li, Xu Zhang, Xingyu Lu, Lei You, Yanqun Song, Zhongguang Luo, Jun Zhang, Ji Nie, Wanwei Zheng, Diannan Xu, Yaping Wang, Yuanqiang Dong, Shulin Yu, Jun Hong, Jianping Shi, Hankun Hao, Fen Luo, Lingyang Hua, Peng Wang, Xiaoping Qian, Fang Yuan, Lian-Huan Wei, Ming Cui, Taiping Zhang, Quan Liao, Menghua Dai, Ziwen Liu, Ge Chen, Katherine Meckel, Sarbani Adhikari, Guifang Jia, Marc Bissonnette, Xin‐Xiang Zhang, Yupei Zhao, Wei Zhang, Chuan He, Jie Liu
Software Mentions: 5
Published: about 7 years ago
10.1186/s12872-021-01961-3
Distinguishing cardiac myxomas from cardiac thrombi by a radiomics signature based on cardiovascular contrast-enhanced computed tomography images
Cited by: 3
Author(s): Wen-Lei Qian, Jiang Yu, Xi Liu, Yingkun Guo, Yuan Li, Xin Tang, Zhigang Yang
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-018-25679-z
A machine learning model with human cognitive biases capable of learning from small and biased datasets
Cited by: 38
Author(s): Hidetaka Taniguchi, Hiroshi Satō, Tomohiro Shirakawa
Software Mentions: 5
Published: over 6 years ago
10.1186/s12872-021-02206-z
Exploring the diagnostic effectiveness for myocardial ischaemia based on CCTA myocardial texture features
Cited by: 3
Author(s): Hengyu Zhao, Yuan Lv, Zhishang Chen, Yuting Liao, Jiangzhou Lin
Software Mentions: 5
Published: about 3 years ago
10.3390/cancers11010053
Prognostic Gene Discovery in Glioblastoma Patients using Deep Learning
Cited by: 34
Author(s): Kelvin Wong, Robert Rostomily, Stephen T.C. Wong
Software Mentions: 5
Published: almost 6 years ago
10.3389/fgene.2020.00499
Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
Cited by: 8
Author(s): Han Zhang, Chuan Qin, Hua Gan, Xiong Guo, Li Zhang
Software Mentions: 5
Published: over 4 years ago
10.3389/fgene.2020.608668
Prognosis-Predictive Signature and Nomogram Based on Autophagy-Related Long Non-coding RNAs for Hepatocellular Carcinoma
Cited by: 37
Author(s): Jie-Ping Yu, Yan Chen, Jiansheng Liu
Software Mentions: 5
Published: almost 4 years ago
10.3389/fgene.2021.728913
A Unified Framework for Inattention Estimation From Resting State Phase Synchrony Using Machine Learning
Cited by: 1
Author(s): Xun‐Heng Wang, Lihua Li
Software Mentions: 5
Published: about 3 years ago
10.1186/s12885-020-07088-6
Overexpression of HOXA10 is associated with unfavorable prognosis of acute myeloid leukemia
Cited by: 17
Author(s): Chao Guo, Qianqian Ju, Chunxia Zhang, Ming Gong, Zhenling Li, Ya-yue Gao
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-019-46718-3
Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning
Cited by: 124
Author(s): Sairam Tabibu, P. K. Vinod, C. V. Jawahar
Software Mentions: 5
Published: over 5 years ago
10.1164/rccm.202003-0510OC
Whole-Blood RNA Profiles Associated with Pulmonary Arterial Hypertension and Clinical Outcome
Cited by: 36
Author(s): Christopher J. Rhodes, Pablo Otero-Núñez, John Wharton, Emilia M. Swietlik, Sokratis Kariotis, Lars Harbaum, Mark J. Dunning, Jason M. Elinoff, Niamh Errington, A. A. Roger Thompson, James Iremonger, J. Gerry Coghlan, Paul A. Corris, Luke Howard, David G. Kiely, Colin Church, Joanna Pepke‐Zaba, Mark Toshner, Stephen J. Wort, Ankit A. Desai, Marc Humbert, William C. Nichols, Laura Southgate, David‐Alexandre Trégouët, Richard Trembath, Inga Prokopenko, Stefan Gräf, Nicholas W. Morrell, Dennis Wang, Allan Lawrie, Martin R. Wilkins
Software Mentions: 5
Published: over 4 years ago
10.3390/cancers13133110
A Prediction Model for Severe Complications after Elective Colorectal Cancer Surgery in Patients of 70 Years and Older
Cited by: 7
Author(s): Esteban T.D. Souwer, E. Bastiaannet, Ewout W. Steyerberg, Jan Willem T. Dekker, W. H. Steup, Marije M. Hamaker, D J A Sonneveld, Thijs A. Burghgraef, Frederiek van den Bos, Johanneke E.A. Portielje
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.633357
Identification of the Prognostic Signatures of Glioma With Different PTEN Status
Cited by: 12
Author(s): Pei Zhang, Xinyi Meng, Liqun Liu, Shengzhen Li, Yang Li, Sakhawat Ali, Shanhu Li, Jichuan Xiong, Xuefeng Li, Shouwei Li, Xia Qin, Lei Dong
Software Mentions: 5
Published: over 3 years ago
10.1186/s12885-019-6462-y
Systematical identifications of prognostic meaningful lung adenocarcinoma subtypes and the underlying mutational and expressional characters
Cited by: 6
Author(s): Zhenyang Lv, Ting Lei
Software Mentions: 5
Published: almost 5 years ago
10.3390/cancers13174317
Comprehensively Exploring the Mutational Landscape and Patterns of Genomic Evolution in Hypermutated Cancers
Cited by: 2
Author(s): Peng-Chan Lin, Yu-Min Yeh, Hui‐Ping Hsu, Ren‐Hao Chan, Bo Lin, Po-Chuan Chen, Chien-Chang Pan, Keng-Fu Hsu, Jenn-Ren Hsiao, Yan‐Shen Shan, Meng-Ru Shen
Software Mentions: 5
Published: about 3 years ago
10.1038/srep43541
Early spatiotemporal-specific changes in intermediate signals are predictive of cytotoxic sensitivity to TNFα and co-treatments
Cited by: 9
Author(s): Lit‐Hsin Loo, Nicola Bougen-Zhukov, Wei-Ling Cecilia Tan
Software Mentions: 5
Published: over 7 years ago
10.1038/srep19244
Evaluation of the 2b-RAD method for genomic selection in scallop breeding
Cited by: 57
Author(s): Jun Dou, Xue Li, Qiang Fu, Wenqian Jiao, Yangping Li, Tianqi Li, Yangfan Wang, Xiaoli Hu, Shi Wang, Zhenmin Bao
Software Mentions: 5
Published: almost 9 years ago
10.3389/fgene.2021.616507
Molecular Subtypes Based on the Stemness Index Predict Prognosis in Glioma Patients
Cited by: 7
Author(s): Jun Tan, Hecheng Zhu, Guihua Tang, Hongwei Liu, Siyi Wanggou, Yudong Cao, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Ming Zhao, Chao Ren, Xingjun Jiang, Yin Wu
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0211075
Development of a risk prediction model (Hangang) and comparison with clinical severity scores in burn patients
Cited by: 9
Author(s): Young‐Min Kim, Dohern Kym, Jun Hur, Jinwoo Jeon, Jaechul Yoon, Haejun Yim, Yong Suk Cho, Wook Chun
Software Mentions: 5
Published: almost 6 years ago
10.3389/fgene.2021.723796
Prognostic Value and Immunological Characteristics of a Novel RNA Binding Protein Signature in Cutaneous Melanoma
Cited by: 5
Author(s): Jun Tian, Chongzhi Ma, Yang Li, Yang Sun, Yuan Zhang
Software Mentions: 5
Published: about 3 years ago
10.1093/braincomms/fcab084
Integrative biochemical, proteomics and metabolomics cerebrospinal fluid biomarkers predict clinical conversion to multiple sclerosis
Cited by: 13
Author(s): Fay Probert, Tianrong Yeo, Yifan Zhou, Megan Sealey, Siddharth Arora, Jacqueline Palace, Timothy D. W. Claridge, Rainer Hillenbrand, Johanna Oechtering, David Leppert, Jens Kühle, D C Anthony
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0238947
Explaining the travelling behaviour of migrants using Facebook audience estimates
Cited by: 0
Author(s): Spyridon Spyratos, Michele Vespe, Franca Natale, Stefano Maria Iacus, Carlos Santamaría
Software Mentions: 5
Published: about 4 years ago
10.3389/fgene.2020.591667
Effects of RNA Binding Proteins on the Prognosis and Malignant Progression in Prostate Cancer
Cited by: 13
Author(s): Xiaoliang Hua, Shengdong Ge, Juan Chen, Li Zhang, Sheng Tai, Chaozhao Liang
Software Mentions: 5
Published: about 4 years ago
10.1038/s41597-019-0337-6
Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction
Cited by: 16
Author(s): Laura Bravo-Merodio, Animesh Acharjee, Jon Hazeldine, Conor Bentley, Mark Foster, Georgios V. Gkoutos, Janet M. Lord
Software Mentions: 5
Published: almost 5 years ago
10.1192/bjp.2018.122
Predicting antidepressant response by monitoring early improvement of individual symptoms of depression: individual patient data meta-analysis
Cited by: 19
Author(s): Ymkje Anna de Vries, Annelieke M. Roest, Elisabeth H. Bos, Johannes G. M. Burgerhof, Hanna M. van Loo, Peter de Jonge
Software Mentions: 5
Published: over 6 years ago
10.3389/fonc.2020.554214
Screening and Identification of Prognostic Tumor-Infiltrating Immune Cells and Genes of Endometrioid Endometrial Adenocarcinoma: Based on The Cancer Genome Atlas Database and Bioinformatics
Cited by: 9
Author(s): Bingnan Chen, Di Wang, Jiapo Li, Yue Hou, Chong Qiao
Software Mentions: 5
Published: almost 4 years ago
10.1126/sciadv.abh0534
Cell-free DNA TAPS provides multimodal information for early cancer detection
Cited by: 36
Author(s): Paulina Siejka-Zielińska, Jingfei Cheng, Felix Jackson, Yibin Liu, Zahir Soonawalla, Srikanth Reddy, Michael Silva, Luminita Puta, Misti McCain, Emma L. Culver, Noor Bekkali, Benjamin Schuster-Böckler, Pier Francesco Palamara, Derek A. Mann, Helen L. Reeves, Eleanor Barnes, Shivan Sivakumar, Chun-Xiao Song
Software Mentions: 5
Published: about 3 years ago
10.3389/fgene.2021.722803
Identification of Potential Biomarkers for Psoriasis by DNA Methylation and Gene Expression Datasets
Cited by: 9
Author(s): Yong Liu, Shengnan Cui, Jiayi Sun, Xin Yan, Dongran Han
Software Mentions: 5
Published: about 3 years ago
10.1093/biostatistics/kxx012
Computational health economics for identification of unprofitable health care enrollees
Cited by: 16
Author(s): Sherri Rose, Savannah Bergquist, Timothy J. Layton
Software Mentions: 5
Published: over 7 years ago
10.3389/fgene.2020.00663
Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
Cited by: 29
Author(s): Shenyu Wei, Jiahua Lu, Jianying Lou, Connie R. Shi, Shaowei Mo, Yaojian Shao, Junjie Ni, Wu Zhang, Xiangdong Cheng
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-017-15137-7
Development of multivariable models to predict change in Body Mass Index within a clinical trial population of psychotic individuals
Cited by: 13
Author(s): Rebecca Harrison, Fiona Gaughran, Robin M. Murray, Sang Hyuck Lee, Jose Paya Cano, David Dempster, Charles Curtis, Danai Dima, Hamel Patel, Simone de Jong, Gerome Breen
Software Mentions: 5
Published: about 7 years ago
10.1186/s13014-020-01699-w
Imaging biomarkers of contrast-enhanced computed tomography predict survival in oesophageal cancer after definitive concurrent chemoradiotherapy
Cited by: 4
Author(s): Chengbing Zeng, Tian‐Tian Zhai, Jianzhou Chen, Longjia Guo, Bao-Tian Huang, Hong Guo, Guozhi Lv, Tingting Zhuang, Weitong Liu, Ting Luo, Yanxuan Wu, Guopeng Peng, Derui Li, Chuangzhen Chen
Software Mentions: 5
Published: almost 4 years ago
10.1186/s13014-021-01810-9
Impact of feature selection methods and subgroup factors on prognostic analysis with CT-based radiomics in non-small cell lung cancer patients
Cited by: 15
Author(s): Yuto Sugai, Noriyuki Kadoya, Shohei Tanaka, Shunpei Tanabe, Mariko Umeda, Takaya Yamamoto, Kazuya Takeda, Suguru Dobashi, Haruna Ohashi, Ken Takeda, Keiichi Jingu
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0106298
Adverse Drug Reaction Prediction Using Scores Produced by Large-Scale Drug-Protein Target Docking on High-Performance Computing Machines
Cited by: 56
Author(s): Montiago X. LaBute, Xiaohua Zhang, Jason Lenderman, Brian J. Bennion, Sergio E. Wong, Felice C. Lightstone
Software Mentions: 5
Published: about 10 years ago
10.3390/rs11050551
The Influence of Region of Interest Heterogeneity on Classification Accuracy in Wetland Systems
Cited by: 11
Author(s): Tedros M. Berhane, Hugo Costa, Charles R. Lane, Oleg A. Anenkhonov, Victor V. Chepinoga, Bradley C. Autrey
Software Mentions: 5
Published: over 5 years ago
10.1016/j.prevetmed.2021.105395
Multiple model triangulation to identify factors associated with lameness in British sheep flocks
Cited by: 5
Author(s): Kate Lewis, Michael J. Green, Jessica D. Witt, Laura Green
Software Mentions: 5
Published: over 3 years ago
10.3389/fgene.2021.658323
Discovery and Validation of Key Biomarkers Based on Immune Infiltrates in Alzheimer’s Disease
Cited by: 22
Author(s): Zhuohang Liu, Hang Li, Shuyi Pan
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.639059
Characterization of Immune Infiltration and Construction of a Prediction Model for Overall Survival in Melanoma Patients
Cited by: 5
Author(s): Gang Li, Xuran Zhu, Chao Liu
Software Mentions: 5
Published: over 3 years ago
10.1098/rsos.201795
Understanding spatial patterns in rape reporting delays
Cited by: 5
Author(s): Konstantin Klemmer, Daniel B. Neill, Stephen A. Jarvis
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0175957
RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses
Cited by: 3
Author(s): Bajuna R. Salehe, Chris I. Jones, Giuseppe Di Fatta, Liam J. McGuffin
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.ppat.1009097
Vaginal microbiome-hormonal contraceptive interactions associate with the mucosal proteome and HIV acquisition
Cited by: 17
Author(s): Laura Noël‐Romas, Michelle Perner, Refilwe P. Molatlhegi, Christina Farr Zuend, Amanda Mabhula, Sarah Hoger, Alana Lamont, Kenzie Birse, Alicia R. Berard, Stuart McCorrister, Garett Westmacott, Al Leslie, Vanessa Poliquin, Renee Heffron, Lyle R. McKinnon, Adam Burgener
Software Mentions: 5
Published: almost 4 years ago
10.1155/2020/5041346
IgG Glycosylation Profile and the Glycan Score Are Associated with Type 2 Diabetes in Independent Chinese Populations: A Case-Control Study
Cited by: 12
Author(s): Zhiyuan Wu, Haibin Li, Di Liu, Lixin Tao, Jie Zhang, Baolu Liang, Xiangtong Liu, Xiaonan Wang, Xia Li, Youxin Wang, Wei Wang, Xiuhua Guo
Software Mentions: 5
Published: over 4 years ago
10.3390/jcm10112524
Evaluation of Intracranial Hypertension in Traumatic Brain Injury Patient: A Noninvasive Approach Based on Cranial Computed Tomography Features
Cited by: 4
Author(s): Yingchi Shan, Yihua Li, Xuxu Xu, Junfeng Feng, Xiang Wu, Guoyi Gao
Software Mentions: 5
Published: over 3 years ago
10.1093/rheumatology/keaa497
Identification and prediction of novel classes of long-term disease trajectories for patients with juvenile dermatomyositis using growth mixture models
Cited by: 5
Author(s): Claire T. Deakin, Charalampia Papadopoulou, Liza McCann, Neil Martin, Muthana Al-Obaidi, Sandrine Compeyrot-Lacassagne, Clarissa Pilkington, Sarah Tansley, Neil McHugh, Lucy R. Wedderburn, Bianca L De Stavola
Software Mentions: 5
Published: about 4 years ago
10.1371/journal.pone.0234552
Multiple measures derived from 3D photonic body scans improve predictions of fat and muscle mass in young Swiss men
Cited by: 8
Author(s): Roman Sager, Sabine Güsewell, Frank J Rühli, Nicole Bender, Kaspar Staub
Software Mentions: 5
Published: over 4 years ago
10.3389/fgene.2021.649196
A Fast Multi-Locus Ridge Regression Algorithm for High-Dimensional Genome-Wide Association Studies
Cited by: 1
Author(s): Jin Zhang, Min Chen, Yang Wen, Yin Zhang, Yunan Lu, Shengmeng Wang, Juncong Chen
Software Mentions: 5
Published: over 3 years ago
10.3390/jcm9041205
The Integration of qSOFA with Clinical Variables and Serum Biomarkers Improves the Prognostic Value of qSOFA Alone in Patients with Suspected or Confirmed Sepsis at ED Admission
Cited by: 14
Author(s): Filippo Mearelli, Giulia Barbati, Chiara Casarsa, Carlo Giansante, Andrea Breglia, Andrea Spica, Cristina Moras, Gaia Olivieri, Alessandro Agostino Occhipinti, Margherita De Nardo, Francesca Spagnol, Nicola Fiotti, Filippo Giorgio Di Girolamo, Maurizio Ruscio, Luigi Mario Castello, Efrem Colonetti, Rossella Marino, Claudio Ronco, Michela Zanetti, Enrico Lupia, María Lorenza Muiesan, Salvatore Di Somma, Gian Carlo Avanzi, Gianni Biolo
Software Mentions: 5
Published: over 4 years ago
10.1186/s12885-020-07535-4
An integrated autophagy-related gene signature predicts prognosis in human endometrial Cancer
Cited by: 13
Author(s): Jun Zhang, Ziwei Wang, Rong Zhao, Lanfen An, Xing Zhou, Yingchao Zhao, Hongbo Wang
Software Mentions: 5
Published: about 4 years ago
10.1042/BSR20204301
Construction of a five-gene prognostic model based on immune-related genes for the prediction of survival in pancreatic cancer
Cited by: 12
Author(s): Bo Liu, Tingting Fu, Ping He, Changsheng Du, Ke Xu
Software Mentions: 5
Published: over 3 years ago
10.3389/fgene.2021.672674
Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
Cited by: 10
Author(s): Jianfeng Zheng, Jialu Guo, Huizhi Zhang, Benben Cao, XU Guomin, Zhifen Zhang, Jinyi Tong
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.703033
A Novel Nomogram Based on Machine Learning-Pathomics Signature and Neutrophil to Lymphocyte Ratio for Survival Prediction of Bladder Cancer Patients
Cited by: 7
Author(s): Siteng Chen, Lingge Jiang, Encheng Zhang, Shanshan Hu, Tao Wang, Feng Gao, Ning Zhang, Xiang Wang, Junhua Zheng
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.710767
N6-Methylandenosine-Related lncRNAs Predict Prognosis and Immunotherapy Response in Bladder Cancer
Cited by: 20
Author(s): Yuying Zhang, Baoyi Zhu, Minghui He, Yi Cai, Xiaoling Ying, Chonghe Jiang, Weidong Ji, Jing Zeng
Software Mentions: 5
Published: over 3 years ago
10.1155/2020/8832739
Identification of 5-Gene Signature Improves Lung Adenocarcinoma Prognostic Stratification Based on Differential Expression Invasion Genes of Molecular Subtypes
Cited by: 19
Author(s): Zhaoxu Zheng, Weijie Deng, Jiansheng Yang
Software Mentions: 5
Published: almost 4 years ago
10.3389/fonc.2018.00674
Identification of Serum MicroRNAs as Novel Biomarkers in Esophageal Squamous Cell Carcinoma Using Feature Selection Algorithms
Cited by: 28
Author(s): Deqiang Zheng, Yuanjie Ding, Qing Ma, Lei Zhao, Xudong Guo, Yi Shen, Yan He, Wenqiang Wei, Fen Liu
Software Mentions: 5
Published: almost 6 years ago
10.3389/fcell.2021.700607
Comprehensive Analysis of a Nine-Gene Signature Related to Tumor Microenvironment in Lung Adenocarcinoma
Cited by: 23
Author(s): Haihui Zhong, Jie Wang, Yaru Zhu, Yefeng Shen
Software Mentions: 5
Published: about 3 years ago
10.1111/acel.12915
Low plasma lysophosphatidylcholines are associated with impaired mitochondrial oxidative capacity in adults in the Baltimore Longitudinal Study of Aging
Cited by: 30
Author(s): Richard D. Semba, Pingbo Zhang, Fatemeh Adelnia, Kai Sun, Marta González-Freire, Norman Salem, Nicholas A. Brennan, Richard G. Spencer, Kenneth W. Fishbein, Mohammed Khadeer, Michelle Shardell, Ruin Moaddel, Luigi Ferrucci
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12885-021-08645-3
Gene-associated methylation status of ST14 as a predictor of survival and hormone receptor positivity in breast Cancer
Cited by: 3
Author(s): Yang-Hong Dai, Ying-Fu Wang, Po-Chien Shen, Cheng‐Hsiang Lo, Juxiang Yang, Chun‐Shu Lin, Hsing‐Lung Chao, Weimin Huang
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0209923
Penalized negative binomial models for modeling an overdispersed count outcome with a high-dimensional predictor space: Application predicting micronuclei frequency
Cited by: 7
Author(s): Rebecca R. Lehman, Kellie J. Archer
Software Mentions: 5
Published: almost 6 years ago
10.3389/fonc.2019.01050
Pretreatment Prediction of Adaptive Radiation Therapy Eligibility Using MRI-Based Radiomics for Advanced Nasopharyngeal Carcinoma Patients
Cited by: 37
Author(s): Ting Yu, Sai Kit Lam, Lok Hang To, Ka Yan Tse, Nong Yi Cheng, Yeuk Nam Fan, Cheuk Lai Lo, Ka Wa Or, Mable Chan, Ka Ching Hui, F. Chan, Wai Ming Hui, Lo Kin Ngai, Francis Kar ho Lee, Kwok Hung Au, Celia Wai yi Yip, Yong Zhang, Jing Cai
Software Mentions: 5
Published: about 5 years ago
10.1111/jcmm.14556
A prognostic 10‐lncRNA expression signature for predicting the risk of tumour recurrence in breast cancer patients
Cited by: 16
Author(s): Jianing Tang, Jiangbo Ren, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Mengxin Lü, Yan Gong
Software Mentions: 5
Published: over 5 years ago
10.1155/2013/303982
A Machine-Learned Predictor of Colonic Polyps Based on Urinary Metabolomics
Cited by: 31
Author(s): Roman Eisner, Russell Greiner, Victor Tso, Haili Wang, Richard N. Fedorak
Software Mentions: 5
Published: almost 12 years ago
10.3389/fonc.2020.541849
Radiomics Nomogram of DCE-MRI for the Prediction of Axillary Lymph Node Metastasis in Breast Cancer
Cited by: 18
Author(s): Ning Mao, Yi Dai, Fan Lin, Heng Ma, Shaofeng Duan, Haizhu Xie, Wenlei Zhao, Nan Hong
Software Mentions: 5
Published: about 4 years ago
10.1371/journal.pone.0167488
Cell-Based Systems Biology Analysis of Human AS03-Adjuvanted H5N1 Avian Influenza Vaccine Responses: A Phase I Randomized Controlled Trial
Cited by: 46
Author(s): Leigh M. Howard, Kristen L. Hoek, Johannes Goll, Parimal Samir, Allison C. Galassie, Tara M. Allos, Xinnan Niu, Laura E. Gordy, C. Buddy Creech, Nripesh Prasad, Travis L. Jensen, Heather Hill, Shawn Levy, Sebastian Joyce, Andrew J. Link, Kathryn M. Edwards
Software Mentions: 5
Published: almost 8 years ago
10.1371/journal.pone.0212108
Drug sensitivity prediction with high-dimensional mixture regression
Cited by: 17
Author(s): Qianyun Li, Runmin Shi, Faming Liang
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0242927
Novel methods for epistasis detection in genome-wide association studies
Cited by: 7
Author(s): Lotfi Slim, Clément Chatelain, Chloé-Agathe Azencott, Jean-Philippe Vert
Software Mentions: 5
Published: almost 4 years ago
10.1155/2020/7929132
Identification of a Seven-lncRNA Immune Risk Signature and Construction of a Predictive Nomogram for Lung Adenocarcinoma
Cited by: 36
Author(s): Donghui Jin, Yuxuan Song, Yuan Chen, Peng Zhang
Software Mentions: 5
Published: over 4 years ago
10.3389/fcell.2020.599494
An Eight-CircRNA Assessment Model for Predicting Biochemical Recurrence in Prostate Cancer
Cited by: 61
Author(s): Shuo Wang, Wei Su, Chuanfan Zhong, Taowei Yang, Wenbin Chen, Cheng Guo, Zezhen Liu, Kuan-Hung Wu, Weibo Zhong, Bingkun Li, Xiangming Mao, Jianming Lü
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0246691
Predicting major bleeding among hospitalized patients using oral anticoagulants for atrial fibrillation after discharge
Cited by: 6
Author(s): Jakub Qazi, Mireille E. Schnitzer, Robert Côté, Marie-Josée Martel, Marc Dorais, Sylvie Perreault
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0041694
Multiple Regression Methods Show Great Potential for Rare Variant Association Tests
Cited by: 20
Author(s): Changjiang Xu, Martin Ladouceur, Zari Dastani, J. Brent Richards, Antonio Ciampi, Celia M.T. Greenwood
Software Mentions: 5
Published: over 12 years ago
10.1093/bioinformatics/btx727
Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks
Cited by: 31
Author(s): Žiga Avsec, Mohammadamin Barekatain, Jianghua Cheng
Software Mentions: 5
Published: about 7 years ago
10.3389/fcell.2021.684643
Development of an Individualized Ubiquitin Prognostic Signature for Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Yue Wu, Xi Zhang, Wa Xian, Huan Feng, Bintao Hu, Zhiyao Deng, Bo Liu, Yang Luan, Yajun Ruan, Xiaohui Liu, Zhuo Liu, Jihong Liu, Tao Wang
Software Mentions: 5
Published: over 3 years ago
10.1007/s12072-019-09962-3
Identification and validation of a prognostic four-genes signature for hepatocellular carcinoma: integrated ceRNA network analysis
Cited by: 41
Author(s): Yongcong Yan, Yaobin Lu, Kai Mao, Mengyu Zhang, Haohan Liu, Qicun Zhou, Jianhong Lin, Jianlong Zhang, Jie Wang, Zhiyu Xiao
Software Mentions: 5
Published: over 5 years ago
10.3390/bioengineering8060085
Supervised Analysis for Phenotype Identification: The Case of Heart Failure Ejection Fraction Class
Cited by: 2
Author(s): Cristina López, Jose Luis Holgado, Raquel Cortés, Inma Sauri, Antonio Fernandez, José Miguel Calderón, Julio Núñez, Josep Redón
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0086107
Influence of the Temperature and the Genotype of the HSP90AA1 Gene over Sperm Chromatin Stability in Manchega Rams
Cited by: 11
Author(s): Manuel Ramón, Judit Salces-Ortiz, Claudette Hajaj Gonzalez, M. D. Pérez-Guzmán, José Julián Garde, Olga García-Álvarez, Alejandro Maroto-Morales, J.H. Calvo, M. Serrano
Software Mentions: 5
Published: almost 11 years ago
10.1080/21655979.2021.1878763
Long non-coding RNA-based signature for predicting prognosis of hepatocellular carcinoma
Cited by: 9
Author(s): Jie Cao, Lili Wu, Lei Xin, Ke–Qing Shi, Liang Shi, Yifen Shi
Software Mentions: 5
Published: almost 4 years ago
10.1128/mSystems.00230-19
Interpretable Log Contrasts for the Classification of Health Biomarkers: a New Approach to Balance Selection
Cited by: 18
Author(s): Thomas P. Quinn, Ionas Erb
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0212846
Predicting one-year outcome in first episode psychosis using machine learning
Cited by: 28
Author(s): Samuel P Leighton, Rajeev Krishnadas, Kelly K. Chung, Alison Blair, Sheona Brown, Suzy Clark, Kathryn Sowerbutts, Matthias Schwannauer, Jonathan Cavanagh, Andrew Gumley
Software Mentions: 4
Published: over 5 years ago
10.1186/s13059-020-02006-2
Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets
Cited by: 29
Author(s): Brenda Marquina-Sanchez, Nikolaus Fortelny, Matthias Farlik, Andhira Vieira, Patrick Collombat, Christoph Bock, Stefan Kubicek
Software Mentions: 4
Published: over 4 years ago
10.1186/s12915-020-00783-7
Tropomyosin 1 genetically constrains in vitro hematopoiesis
Cited by: 8
Author(s): Christopher S. Thom, Chintan Jobaliya, Kimberly Lorenz, Jean Ann Maguire, Alyssa Gagne, Paul Gadue, Deborah L. French, Benjamin F. Voight
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pmed.1002194
Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study
Cited by: 401
Author(s): H. Raza Ali, L Chlon, Paul D.P. Pharoah, Florian Markowetz, Carlos Caldas
Software Mentions: 4
Published: almost 8 years ago
10.1186/s13059-017-1203-5
Multi-tissue DNA methylation age predictor in mouse
Cited by: 307
Author(s): Thomas M. Stubbs, Marc Jan Bonder, Anne-Katrien Stark, Felix Krueger, Ferdinand von Meyenn, Oliver Stegle, Wolf Reik
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pgen.1004890
Altered Chromatin Occupancy of Master Regulators Underlies Evolutionary Divergence in the Transcriptional Landscape of Erythroid Differentiation
Cited by: 41
Author(s): Jacob C. Ulirsch, Jessica Lacy, Xiuli An, Narla Mohandas, Tarjei S. Mikkelsen, Vijay G. Sankaran
Software Mentions: 4
Published: almost 10 years ago
10.1371/journal.pgen.1004137
Accurate and Robust Genomic Prediction of Celiac Disease Using Statistical Learning
Cited by: 97
Author(s): Gad Abraham, Jason A. Tye‐Din, Oneil G. Bhalala, Adam Kowalczyk, Justin Zobel, Michael Inouye
Software Mentions: 4
Published: almost 11 years ago
10.3389/fonc.2020.01211
Exploration the Significance of a Novel Immune-Related Gene Signature in Prognosis and Immune Microenvironment of Breast Cancer
Cited by: 15
Author(s): Yajie Zhao, Chunrui Pu, Zhenzhen Liu
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pgen.1007473
RES complex is associated with intron definition and required for zebrafish early embryogenesis
Cited by: 23
Author(s): Juan Pablo Fernández, Miguel A. Moreno-Mateos, André Gohr, Liyun Miao, Shun Hang Chan, Manuel Irimia, Antonio J. Giráldez
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pgen.1003926
Fine-Mapping the Genetic Association of the Major Histocompatibility Complex in Multiple Sclerosis: HLA and Non-HLA Effects
Cited by: 235
Author(s): Nikolaos A. Patsopoulos, Lisa F. Barcellos, Rogier Q. Hintzen, Catherine Schaefer, Cornelia M. van Duijn, Janelle A. Noble, Towfique Raj, Pierre-Antoine Gourraud, Barbara Elaine Stranger, Jorge R. Oksenberg, Tomas Olsson, Bruce Taylor, Stephen Sawcer, David A. Hafler, Mary Carrington, Philip L. De Jager, Paul I. W. de Bakker
Software Mentions: 4
Published: about 11 years ago
10.1186/s41927-019-0078-3
Abstracts of scientific contributions to GCOM 2019
Cited by: 0
Author(s):
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pcbi.1004790
Pathway-Based Genomics Prediction using Generalized Elastic Net
Cited by: 82
Author(s): Artem Sokolov, Daniel E. Carlin, Evan O. Paull, Robert Baertsch, Joshua M. Stuart
Software Mentions: 4
Published: over 8 years ago
10.1186/s13104-020-05371-0
FINET: Fast Inferring NETwork
Cited by: 9
Author(s): Anyou Wang, Rong Hai
Software Mentions: 4
Published: about 4 years ago
10.3389/fonc.2020.616263
Immunohistochemical Signature Add Prognostic Value in Patients With Early and Intermediate Hepatocellular Carcinoma Underwent Curative Liver Resection
Cited by: 2
Author(s): Yan Bai, Yuane Lian, Xiaoping Chen, Jiayi Wu, Jianlin Lai, Funan Qiu, Songqiang Zhou, Zijing Zhu, Yuan Tian, Yaodong Wang, Yinghong Yang, Mao-Lin Yan
Software Mentions: 4
Published: almost 4 years ago
10.1002/gepi.22374
Multi‐tissue transcriptome‐wide association studies
Cited by: 8
Author(s): Nastasiya F. Grinberg, Chris Wallace
Software Mentions: 4
Published: almost 4 years ago