pypi: glmnet | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0092549

The Construction of Risk Prediction Models Using GWAS Data and Its Application to a Type 2 Diabetes Prospective Cohort
Cited by: 31
Author(s): Daichi Shigemizu, Testuo Abe, Takashi Morizono, Todd A. Johnson, Keith A. Boroevich, Yoichiro Hirakawa, Toshiharu Ninomiya, Yutaka Kiyohara, Michiaki Kubo, Yusuke Nakamura, Shiro Maeda, Tatsuhiko Tsunoda
Software Mentions: 3
Published: over 10 years ago

10.1155/2020/4037639

A Five-Gene Signature for Recurrence Prediction of Hepatocellular Carcinoma Patients
Cited by: 6
Author(s): Zeyu Wang, Ningning Zhang, Jiayu Lv, Cuihua Ma, Jun Gu, Yawei Du, Yulan Qiu, Zhiguang Zhang, Man Li, Yong Jiang, Jianqiu Zhao, Hui-Qin Du, Zhiwei Zhang, Yan Zhang
Software Mentions: 3
Published: about 4 years ago

10.3389/fgene.2013.00270

Evaluation of the lasso and the elastic net in genome-wide association studies
Cited by: 154
Author(s): Patrik Waldmann, Gábor Mészáros, Birgit Gredler, Christian Fuerst, Johann Sölkner
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0222763

Enriched taxa were found among the gut microbiota of centenarians in East China
Cited by: 22
Author(s): Na Wang, Rui Li, Haijiang Lin, Chaowei Fu, Xuecai Wang, Yiming Zhang, Meifang Su, Peixin Huang, Junhua Qian, Feng Jiang, Hexing Wang, Lufang Jiang, Xin Yu, Jianxiang Liu, Yue Chen, Qingwu Jiang
Software Mentions: 3
Published: about 5 years ago

10.3390/genes12010125

Identification of Potential Risk Genes and the Immune Landscape of Idiopathic Pulmonary Arterial Hypertension via Microarray Gene Expression Dataset Reanalysis
Cited by: 8
Author(s): Jing Xu, Yicheng Yang, Yuejin Yang, Changming Xiong
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0177286

Functional data analysis of sleeping energy expenditure
Cited by: 4
Author(s): Jong Soo Lee, Issa Zakeri, Nancy F. Butte
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.14850

Therapy-induced developmental reprogramming of prostate cancer cells and acquired therapy resistance
Cited by: 49
Author(s): Mannan Nouri, Josselin Caradec, Amy A. Lubik, Na Li, Brett G. Hollier, Mandeep Takhar, Manuel Altimirano-Dimas, Mengqian Chen, Mani Roshan-Moniri, Miriam Butler, Melanie Lehman, Jennifer Bishop, Sarah Truong, Shih Chieh Huang, Dawn R. Cochrane, Michael Cox, Colin C. Collins, Martin Gleave, Nicholas Erho, Mohamed Alshalafa, Elai Davicioni, Colleen C. Nelson, Sheryl Gregory-Evans, R. Jeffrey Karnes, Robert B. Jenkins, Eric A. Klein, Ralph Buttyan
Software Mentions: 3
Published: almost 8 years ago

10.1002/gepi.22345

A framework for pathway knowledge driven prioritization in genome‐wide association studies
Cited by: 2
Author(s): Shrayashi Biswas, Suresh Pal, Partha P. Majumder, Samsiddhi Bhattacharjee
Software Mentions: 3
Published: over 4 years ago

10.3390/nu12092839

Learning the Language of Social Media: A Comparison of Engagement Metrics and Social Media Strategies Used by Food and Nutrition-Related Social Media Accounts
Cited by: 26
Author(s): Amy Barklamb, Annika Molenaar, Linda Brennan, Stephanie Evans, Jamie Choong, E. Wayne Herron, Mike Reid, Tracy A. McCaffrey
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0191241

A portable prototype magnetometer to differentiate ischemic and non-ischemic heart disease in patients with chest pain
Cited by: 8
Author(s): Shima Ghasemi-Roudsari, Abbas Al-Shimary, Benjamin T. H. Varcoe, Rowena Byrom, Lorraine Kearney, Mark T. Kearney
Software Mentions: 3
Published: almost 7 years ago

10.18632/oncotarget.18332

A cerebrospinal fluid microRNA signature as biomarker for glioblastoma
Cited by: 97
Author(s): Johnny Akers, Wei Hua, Hongying Li, Valya Ramakrishnan, Zixiao Yang, Kai Quan, Wei Zhu, Jie Li, Javier Figueroa, Brian R. Hirshman, Brittney Miller, David Piccioni, Florian Ringel, Ricardo J. Komotar, Karen Messer, Douglas Galasko, Fred H. Hochberg, Ying Mao, Bob S. Carter, Clark C. Chen
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0222641

Automated clear cell renal carcinoma grade classification with prognostic significance
Cited by: 34
Author(s): Ke Tian, Christopher A. Rubadue, Douglas I. Lin, Mitko Veta, Michael E. Pyle, Humayun Irshad, Yujing J. Heng
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0222952

Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease
Cited by: 27
Author(s): Nathan Palmer, Jocelyn A. Silvester, Jessica J. Lee, Andrew L. Beam, Inbar Fried, Vladimir I. Valtchinov, Fedik Rahimov, Sek Won Kong, Saum Ghodoussipour, Helen C. Hood, Athos Bousvaros, Richard J. Grand, Louis M. Kunkel, Isaac S. Kohane
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-018-24519-4

A four-microRNA classifier as a novel prognostic marker for tumor recurrence in stage II colon cancer
Cited by: 30
Author(s): Havjin Jacob, Luka Stanisavljević, Kristian Eeg Storli, Kjersti Elvestad Hestetun, Olav Dahl, Mette Pernille Myklebust
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.612952

A 13-Gene Metabolic Prognostic Signature Is Associated With Clinical and Immune Features in Stomach Adenocarcinoma
Cited by: 17
Author(s): Zaisheng Ye, Miao Zheng, Yi Zeng, Shenghong Wei, He Huang, Yi Wang, Qinying Liu, Zhitao Lin, Chen Shu, Qinqin Zheng, Luchuan Chen
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-68383-7

A nomogram model for screening the risk of diabetes in a large-scale Chinese population: an observational study from 345,718 participants
Cited by: 9
Author(s): Mingyue Xue, Yinxia Su, Zuyong Feng, Shuxia Wang, Mingchen Zhang, Kai Wang, Hua Yao
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pntd.0009797

A gene expression panel for estimating age in males and females of the sleeping sickness vector Glossina morsitans
Cited by: 1
Author(s): Eric R. Lucas, Alistair C. Darby, Stephen J. Torr, Martin J. Donnelly
Software Mentions: 3
Published: about 3 years ago

10.3389/fonc.2020.567512

Prognostic Implications of Novel Ten-Gene Signature in Uveal Melanoma
Cited by: 25
Author(s): Huan Luo, Chi Ma, Jing Shao, Jing Cao
Software Mentions: 3
Published: about 4 years ago

10.1186/s12967-019-1946-8

Development and validation of a new tumor-based gene signature predicting prognosis of HBV/HCV-included resected hepatocellular carcinoma patients
Cited by: 15
Author(s): Gui‐Qi Zhu, Yi Yang, Er‐Bao Chen, Biao Wang, Kun Xiao, Shi-Ming Shi, Zheng‐Jun Zhou, Shao-Lai Zhou, Zheng Wang, Ying‐Hong Shi, Jia Fan, Jian Zhou, Tianshu Liu
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008896

Learning the properties of adaptive regions with functional data analysis
Cited by: 13
Author(s): Mehreen R. Mughal, Hillary Koch, Jinguo Huang, Francesca Chiaromonte, Michael DeGiorgio
Software Mentions: 3
Published: about 4 years ago

10.18632/oncotarget.20195

A GLO10 score for the prediction of prognosis in high grade gliomas
Cited by: 0
Author(s): Feng Chen, Peng Peng, Yi Zhou, Zhenyu Yang, Haiquan Zhang, Xiang-Sheng Ao, Daohong Zhou, Chun-Xiang Xiang
Software Mentions: 3
Published: over 7 years ago

10.3389/fonc.2020.571189

An Autophagy-Related Gene Signature Associated With Clinical Prognosis and Immune Microenvironment in Gliomas
Cited by: 28
Author(s): Yu Xu, Renpeng Li, Xiaoxia Li, Naijun Dong, Di Wu, Haoran Lin, Kan Yin, Chunhua Zhao
Software Mentions: 3
Published: about 4 years ago

10.3389/fonc.2020.01621

Deep Learning-Based Radiomics of B-Mode Ultrasonography and Shear-Wave Elastography: Improved Performance in Breast Mass Classification
Cited by: 34
Author(s): Xiang Zhang, Liang Ming, Zehong Yang, Chushan Zheng, Jiayi Wu, Bing Ou, Haojiang Li, Xiaoyan Wu, Baoming Luo, Jun Shen
Software Mentions: 3
Published: about 4 years ago

10.7150/jca.52439

Novel biomarkers and prediction model for the pathological complete response to neoadjuvant treatment of triple-negative breast cancer
Cited by: 4
Author(s): Yiqun Han, Jiayu Wang, Binghe Xu
Software Mentions: 3
Published: almost 4 years ago

10.7717/peerj.8383

Autophagy-related genes prognosis signature as potential predictive markers for immunotherapy in hepatocellular carcinoma
Cited by: 23
Author(s): Deli Mao, Zhe Zhang, Xin Zhao, Xiaoqiang Dong
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-65040-x

Machine-learning based exploration of determinants of gray matter volume in the KORA-MRI study
Cited by: 3
Author(s): Franziska Galiè, Susanne Rospleszcz, Daniel Keeser, Ebba Beller, Ben Illigens, Roberto Lorbeer, Sergio Grosu, Sonja Selder, Sigrid Auweter, Christopher L. Schlett, Wolfgang Rathmann, Lars Schwettmann, Karl‐Heinz Ladwig, Jakob Linseisen, Annette Peters, Fabian Bamberg, Birgit Ertl‐Wagner, Sophia Stoecklein
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pmed.1003777

Predictive symptoms for COVID-19 in the community: REACT-1 study of over 1 million people
Cited by: 63
Author(s): Joshua Elliott, Matthew Whitaker, Barbara Bodinier, Oliver Eales, Steven Riley, Helen Ward, Graham Cooke, Ara Darzi, Marc Chadeau‐Hyam, Paul Elliott
Software Mentions: 3
Published: about 3 years ago

10.2471/BLT.14.139972

Data-driven methods for imputing national-level incidence in global burden of disease studies
Cited by: 16
Author(s): Scott McDonald, Brecht Devleesschauwer, Niko Speybroeck, Niel Hens, Nicolas Praet, Paul R. Torgerson, Arie H. Havelaar, Felicia Wu, Marlène Tremblay, Ermias Amene, Dörte Döpfer
Software Mentions: 3
Published: over 9 years ago

10.3389/fonc.2021.620246

Radiomics Study for Predicting the Expression of PD-L1 and Tumor Mutation Burden in Non-Small Cell Lung Cancer Based on CT Images and Clinicopathological Features
Cited by: 25
Author(s): Qiang Wen, Zhe Yang, Hui Dai, Alei Feng, Qiang Li
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.610691

Computer Tomography Radiomics-Based Nomogram in the Survival Prediction for Brain Metastases From Non-Small Cell Lung Cancer Underwent Whole Brain Radiotherapy
Cited by: 9
Author(s): Ji Zhang, Juebin Jin, Yao Ai, Kecheng Zhu, Chengjian Xiao, Conghua Xie, Xiance Jin
Software Mentions: 3
Published: almost 4 years ago

10.7554/eLife.58954

Genetic and environmental determinants of variation in the plasma lipidome of older Australian twins
Cited by: 8
Author(s): Matthew Wai Kin Wong, Anbupalam Thalamuthu, Nady Braidy, Karen A. Mather, Yue Liu, Liliana G Ciobanu, Bernhardt T. Baune, Nicola J. Armstrong, John B. Kwok, Peter R. Schofield, Margaret J. Wright, David Ames, Russell Pickford, Teresa Lee, Anne Poljak, Perminder S. Sachdev
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.45056

Global donor and acceptor splicing site kinetics in human cells
Cited by: 47
Author(s): Leonhard Wachutka, Livia Caizzi, Julien Gagneur, Patrick Cramer
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.60220

Identifying molecular features that are associated with biological function of intrinsically disordered protein regions
Cited by: 37
Author(s): Taraneh Zarin, Bob Strome, Gang Peng, Iva Pritišanac, Julie D. Forman‐Kay, Alan M. Moses
Software Mentions: 3
Published: almost 4 years ago

10.3389/pore.2021.1609822

Liver-Metastasis-Related Genes are Potential Biomarkers for Predicting the Clinical Outcomes of Patients with Pancreatic Adenocarcinoma
Cited by: 6
Author(s): Yi Dong, Jingyi Tian, Bingqian Yan, Kun Lv, Ji Li, Deliang Fu
Software Mentions: 3
Published: over 3 years ago

10.1186/gb-2013-14-10-r115

DNA methylation age of human tissues and cell types
Cited by: 4,174
Author(s): Steve Horvath
Software Mentions: 3
Published: almost 12 years ago

10.7150/jca.51079

Infiltrating Immune Cells in Gastric Cancer: A Novel Predicting Model for Prognosis
Cited by: 6
Author(s): Wenjie Li, Mengting Li, Haizhou Wang, Yanan Peng, Shouquan Dong, Yuanyuan Lu, Fan Wang, Fei Xu, Lan Liu, Qiu Zhao
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2020.01268

Exploratory Study of a CT Radiomics Model for the Classification of Small Cell Lung Cancer and Non-small-Cell Lung Cancer
Cited by: 18
Author(s): Shihe Liu, Shunli Liu, Chuanyu Zhang, Hongwen Yu, Xuejun Liu, Yabin Hu, Wenjian Xu, Xiaoyan Tang, Qing Fu
Software Mentions: 3
Published: about 4 years ago

10.3389/fcell.2021.651406

A Novel Immune-Related Prognostic Model for Response to Immunotherapy and Survival in Patients With Lung Adenocarcinoma
Cited by: 28
Author(s): Zheng Yang, He Tian, Zheng Zhou, Xiao Chu, Hengchang Liu, Yu Liu, Li-Yu Wang, Tao Fan, Bo Zheng, Fengwei Tan, Qi Xue, Gengshu Gao, Chunxiang Li, Jie He
Software Mentions: 3
Published: over 3 years ago

10.1186/s12918-018-0612-8

BLASSO: integration of biological knowledge into a regularized linear model
Cited by: 4
Author(s): Daniel Urda, Francisco Aragón, Rocío Bautista, Leonardo Franco, Francisco J. Veredas, M. Gonzalo Claros, José M. Jerez
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1003203

The Individualized Genetic Barrier Predicts Treatment Response in a Large Cohort of HIV-1 Infected Patients
Cited by: 21
Author(s): Niko Beerenwinkel, Hesam Montazeri, Heike Schuhmacher, Patrick Knupfer, Viktor von Wyl, Hansjakob Furrer, Manuel Battegay, Bernard Hirschel, Matthias Cavassini, Pietro Vernazza, Enos Bernasconi, Sabine Yerly, Jürg Böni, Thomas Klimkait, Cristina Cellerai, Huldrych F. Günthard
Software Mentions: 3
Published: about 11 years ago

10.1007/s10633-017-9593-y

Wavelet decomposition analysis in the two-flash multifocal ERG in early glaucoma: a comparison to ganglion cell analysis and visual field
Cited by: 12
Author(s): Lívia M. Brandão, Matthias Monhart, Andreas Schötzau, Anna A. Ledolter, Anja Palmowski-Wolfe
Software Mentions: 3
Published: over 7 years ago

10.1186/s13059-015-0610-8

MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome
Cited by: 76
Author(s): Ohad Manor, Elhanan Borenstein
Software Mentions: 3
Published: over 9 years ago

10.1186/s12859-016-1210-7

Tilting the lasso by knowledge-based post-processing
Cited by: 9
Author(s): Kukatharmini Tharmaratnam, Matthew Sperrin, Thomas Jaki, Sjur Reppe, Arnoldo Frigessi
Software Mentions: 3
Published: about 8 years ago

10.7554/eLife.48114

Pretectal neurons control hunting behaviour
Cited by: 39
Author(s): Paride Antinucci, Mónica Folgueira, Isaac H. Bianco
Software Mentions: 3
Published: about 5 years ago

10.3389/pore.2021.632531

UBE2T Contributes to the Prognosis of Esophageal Squamous Cell Carcinoma
Cited by: 9
Author(s): Xiaoyuan Wang, Yang Liu, Xue Leng, Kui Cao, Wentao Sun, Jinhong Zhu, Jianqun Ma
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-016-1050-9

Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models
Cited by: 35
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 3
Published: about 8 years ago

10.1177/2325967117716381

Development of a Prediction Model for Stress Fracture During an Intensive Physical Training Program: The Royal Marines Commandos
Cited by: 7
Author(s): Maria T Sanchez‐Santos, T. F. Davey, K M Leyland, Adrian Allsopp, Susan A Lanham-New, Andrew Judge, N K Arden, Joanne L. Fallowfield
Software Mentions: 3
Published: over 7 years ago

10.1194/jlr.M057562

Plasma diacylglycerol composition is a biomarker of metabolic syndrome onset in rhesus monkeys
Cited by: 18
Author(s): Michael A. Polewski, Maggie S. Burhans, Minghui Zhao, Ricki J. Colman, Dhanansayan Shanmuganayagam, Mary J. Lindstrom, James M. Ntambi, Rozalyn M. Anderson
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.5643

Analysis of relative abundances with zeros on environmental gradients: a multinomial regression model
Cited by: 7
Author(s): Fiona Chong, Matthew Spencer
Software Mentions: 3
Published: about 6 years ago

10.1186/1472-6882-13-307

A practical approach to Sasang constitutional diagnosis using vocal features
Cited by: 7
Author(s): Jun-Su Jang, Boncho Ku, Young-Su Kim, Jin Hyun Nam, Keun Ho Kim, Jong Yeol Kim
Software Mentions: 3
Published: about 11 years ago

10.1186/s13059-018-1514-1

Epigenetic prediction of complex traits and death
Cited by: 133
Author(s): Daniel L. McCartney, Robert F. Hillary, Anna J. Stevenson, Stuart J. Ritchie, Richard M Martin, Qian Zhang, Stewart W. Morris, Mairead Lesley Bermingham, Archie Campbell, Alison Murray, Heather C. Whalley, Catharine R. Galé, David J. Porteous, Chris Haley, Allan F. McRae, Naomi R. Wray, Peter M. Visscher, Andrew M. McIntosh, Kathryn Evans, Ian J. Deary, Riccardo E. Marioni
Software Mentions: 3
Published: about 6 years ago

10.15252/emmm.201810168

A circRNA signature predicts postoperative recurrence in stage II/III colon cancer
Cited by: 84
Author(s): Huai-Qiang Ju, Qi Zhao, Feng Wang, Ping Lan, Zixian Wang, Zhi Zuo, Qi Wu, Xin Fan, Hai Yu Mo, Li Chen, Ting Li, Chao Ren, Xiang Wan, Gong Chen, Yu Hong Li, Wei Hua Jia, Rui‐Hua Xu
Software Mentions: 3
Published: about 5 years ago

10.1007/s11695-016-2477-5

Upregulated TNF Expression 1 Year After Bariatric Surgery Reflects a Cachexia-Like State in Subcutaneous Adipose Tissue
Cited by: 12
Author(s): Alexander Jürets, Bianca Itariu, Magdalena Keindl, Gerhard Prager, Felix B. Langer, Viktor Grablowitz, Maximilian Zeyda, Thomas Stulnig
Software Mentions: 3
Published: almost 8 years ago

10.12688/f1000research.16216.2

Feature selection with the R package MXM
Cited by: 9
Author(s): Michail Tsagris, Ioannis Tsamardinos
Software Mentions: 3
Published: about 5 years ago

10.1038/s42003-021-02179-x

Multi-species and multi-tissue methylation clocks for age estimation in toothed whales and dolphins
Cited by: 33
Author(s): Todd R. Robeck, Zhe Fei, Ake T. Lu, Amin Haghani, Eve Jourdain, Joseph A. Zoller, Caesar Z. Li, Karen J. Steinman, Stacy DiRocco, Todd L. Schmitt, S. B. Osborn, William Van Bonn, Etsuko Katsumata, June Mergl, Javier Almunia, Magdalena Rodríguez, Martin Haulena, Christopher Dold, Steve Horvath
Software Mentions: 3
Published: over 3 years ago

10.1007/s10994-018-5714-4

Bootstrapping the out-of-sample predictions for efficient and accurate cross-validation
Cited by: 119
Author(s): Ioannis Tsamardinos, Elissavet Greasidou, Giorgos Borboudakis
Software Mentions: 3
Published: over 6 years ago

10.18632/oncotarget.20519

Development of a preprocedure nomogram for predicting contrast-induced acute kidney injury after coronary angiography or percutaneous coronary intervention
Cited by: 11
Author(s): Bin Guo, Fusheng Ouyang, Shao-Ming Yang, Ziwei Liu, Shao-Jia Lin, Meng Wang, Xiyi Huang, Lizhu Ouyang, Haixiong Chen, Qiugen Hu
Software Mentions: 3
Published: over 7 years ago

10.3389/fonc.2021.677814

Development of CT-Based Imaging Signature for Preoperative Prediction of Invasive Behavior in Pancreatic Solid Pseudopapillary Neoplasm
Cited by: 7
Author(s): Wei Huang, Si-Yun Liu, Yijing Han, Liming Li, Pan Liang, Jianbo Gao
Software Mentions: 3
Published: over 3 years ago

10.15252/emmm.201505424

Androgen receptor profiling predicts prostate cancer outcome
Cited by: 62
Author(s): Suzan Stelloo, Ekaterina Nevedomskaya, Henk G. van der Poel, Jeroen de Jong, Geert J.L.H. van Leenders, Guido Jenster, Lodewyk F.A. Wessels, Andries M. Bergman, Wilbert Zwart
Software Mentions: 3
Published: about 9 years ago

10.3390/metabo8010006

Impact of Prolonged Blood Incubation and Extended Serum Storage at Room Temperature on the Human Serum Metabolome
Cited by: 30
Author(s): Beate Kamlage, Sebastian Neuber, Bianca Bethan, Sandra González Maldonado, Antje Wagner-Golbs, Erik Peter, Oliver Schmitz, Philipp Schatz
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-61589-9

Analysis of SNP Array Abnormalities in Patients with DE NOVO Acute Myeloid Leukemia with Normal Karyotype
Cited by: 7
Author(s): Mariam Ibáñez, Esperanza Such, Esther Onecha, Inés Gómez-Seguí, Alessandro Liquori, Jorge Sellés, David Hervás‐Marín, Eva Barragán, Rosa Ayala, Marta Llop, Maria López-Pavía, Inmaculada Rapado, Alexander Neef, Alejandra Sanjuán-Pla, Claudia Sargas, Elisa González-Romero, Mireia Boluda-Navarro, Rafa Andreu, Leonor Senent, Pau Montesinos, Joaquín Martínez‐López, Miguel Á. Sanz, Guillermo Sanz, José Cervera
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.5395

“Closer‐to‐home” strategy benefits juvenile survival in a long‐distance migratory bird
Cited by: 44
Author(s): Yachang Cheng, Wolfgang Fiedler, Martin Wikelski, Andrea Flack
Software Mentions: 3
Published: over 5 years ago

10.1186/s13075-018-1580-5

Factors associated with physicians’ prescriptions for rheumatoid arthritis drugs not filled by patients
Cited by: 8
Author(s): Hong Kan, Kirill Dyagilev, Peter Schulam, Suchi Saria, Hadi Kharrazi, David P. Bodycombe, Charles Molta, Jeffrey R. Curtis
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.5905

High mortality rates in a juvenile free‐ranging marine predator and links to dive and forage ability
Cited by: 9
Author(s): Sam L. Cox, Matthieu Authier, Florian Orgeret, Henri Weimerskirch, Christophe Guinet
Software Mentions: 3
Published: almost 5 years ago

10.1093/gbe/evy146

Genome-Wide Changes in Protein Translation Efficiency Are Associated with Autism
Cited by: 15
Author(s): Igor B. Rogozin, E. Michael Gertz, Pavel V. Baranov, Eugenia Poliakov, Alejandro A. Schäffer
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2020.571380

Multiple Immune Features-Based Signature for Predicting Recurrence and Survival of Inoperable LA-NSCLC Patients
Cited by: 2
Author(s): Meiying Guo, Wanlong Li, Butuo Li, Bing Zou, Shijiang Wang, Bin Fan, Xuejun Sun, Linlin Wang
Software Mentions: 3
Published: about 4 years ago

10.3389/fonc.2020.00457

A Novel Multimodal Radiomics Model for Preoperative Prediction of Lymphovascular Invasion in Rectal Cancer
Cited by: 38
Author(s): Yiying Zhang, Kan He, Yan Guo, Xiangchun Liu, Qi Yang, Chunyu Zhang, Yunming Xie, Shengnan Mu, Yu Guo, Yu Fu, Huimao Zhang
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2021.710694

The Prognostic Value of the DNA Repair Gene Signature in Head and Neck Squamous Cell Carcinoma
Cited by: 2
Author(s): Ruijie Ming, Enhao Wang, Jiahui Wei, Jinxiong Shen, Shimin Zong, Hongjun Xiao
Software Mentions: 3
Published: over 3 years ago

10.1186/s40478-019-0795-2

Multiplex proteomics identifies novel CSF and plasma biomarkers of early Alzheimer’s disease
Cited by: 127
Author(s): Christopher D. Whelan, Niklas Mattsson, Michael W. Nagle, Swetha Vijayaraghavan, Craig Hyde, Randall J. Bateman, Erik Stomrud, Julie Lee, Lori Fitz, Tarek A. Samad, Gayathri Ramaswamy, Richard Margolin, Anders Mälarstig, Oskar Hansson
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2021.638362

Computed Tomography-Based Radiomics Nomogram: Potential to Predict Local Recurrence of Gastric Cancer After Radical Resection
Cited by: 6
Author(s): Liebin Huang, Feng Bao, Yueyue Li, Yu Liu, Yehang Chen, Qinxian Chen, Changlin Li, Wenxi Huang, Haibo Xue, Xuehua Li, Tao Zhou, Ronggang Li, Wansheng Long, Shi‐Ting Feng
Software Mentions: 3
Published: about 3 years ago

10.3389/fonc.2020.569435

Utility of Radiomics for Predicting Patient Survival in Hepatocellular Carcinoma With Portal Vein Tumor Thrombosis Treated With Stereotactic Body Radiotherapy
Cited by: 8
Author(s): Kui Wu, Yongjie Shui, Wenchuan Sun, Sheng Lin, Haowen Pang
Software Mentions: 3
Published: about 4 years ago

10.1186/gm433

Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
Cited by: 96
Author(s): Gerald Quon, Syed Haider, Amit G. Deshwar, Ang Cui, Paul C. Boutros, Quaid Morris
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12967-020-02374-0

Neutrophil-to-lymphocyte ratio predicts critical illness patients with 2019 coronavirus disease in the early stage
Cited by: 592
Author(s): Jingyuan Liu, Yao Liu, Xiang Pan, Lin Pu, Haofeng Xiong, Chuansheng Li, Ming Zhang, Jianbo Tan, Yanli Xu, Rui Song, Meihua Song, Lin Wang, Wei Zhang, Bing Han, Li Yang, Xiaojing Wang, Guiqin Zhou, Ting Zhang, Ben Li, Yanbin Wang, Zhihai Chen, Xianbo Wang
Software Mentions: 3
Published: over 4 years ago

10.20892/j.issn.2095-3941.2020.0648

A nomogram-based immune-serum scoring system predicts overall survival in patients with lung adenocarcinoma
Cited by: 5
Author(s): Qun Huang, Tongyuan Qu, Lisha Qi, Changxu Liu, Yuhong Guo, Qian Guo, Guangning Li, Yalei Wang, Wenshuai Zhang, Wei Zhao, Danyang Ren, Leina Sun, Shengguang Wang, Bin Meng, Bei Sun, Bin Zhang, Wenjuan Ma, Weijun Cao
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12943-016-0560-0

Cancer somatic mutations cluster in a subset of regulatory sites predicted from the ENCODE data
Cited by: 3
Author(s): Nisar Ahmed Shar, M. Vijayabaskar, David R. Westhead
Software Mentions: 3
Published: almost 8 years ago

10.3389/fonc.2020.570281

A Three-Metabolic-Genes Risk Score Model Predicts Overall Survival in Clear Cell Renal Cell Carcinoma Patients
Cited by: 8
Author(s): Yiqiao Zhao, Zijia Tao, Xiaonan Chen
Software Mentions: 3
Published: about 4 years ago

10.3390/jpm11020064

Does Proteomic Mirror Reflect Clinical Characteristics of Obesity?
Cited by: 2
Author(s): Olga I. Kiseleva, Viktoriia A. Arzumanian, Ekaterina V. Poverennaya, Mikhail A. Pyatnitskiy, Ekaterina V. Ilgisonis, Victor G. Zgoda, О А Плотникова, Khaider K. Sharafetdinov, А. В. Лисица, V A Tutelyan, D. B. Nikityuk, Alexander I. Archakov, Elena Ponomarenko
Software Mentions: 3
Published: almost 4 years ago

10.18632/oncotarget.22861

A novel messenger RNA signature as a prognostic biomarker for predicting relapse in pancreatic ductal adenocarcinoma
Cited by: 14
Author(s): Guodong Shi, Jingjing Zhang, Zipeng Lu, Dongfang Liu, Yang Wu, Pengfei Wu, Jie Yin, Yuan Hao, Qing Zhu, Lei Chen, Yue Fu, Yunpeng Peng, Yan Wang, Kuirong Jiang, Yi Miao
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2020.00456

Comprehensive Analysis of Prognostic Alternative Splicing Signatures in Endometrial Cancer
Cited by: 8
Author(s): Peigen Chen, Junxian He, Huixia Ye, Senwei Jiang, Yunhui Li, Xiaomao Li, Jing Wan
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2021.712746

Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile
Cited by: 9
Author(s): Ze Xiong, Yu Lin, Yan Yu, Xianghui Zhou, Jun Fan, Colin J. Rog, Kailin Cai, Zheng Wang, Zhijie Chen, Guobin Wang, Kaixiong Tao, Ming Cai
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pcbi.1005157

Fused Regression for Multi-source Gene Regulatory Network Inference
Cited by: 36
Author(s): Kari Y. Lam, Zachary M. Westrick, Christian L. Müller, Lionel Christiaen, Richard Bonneau
Software Mentions: 3
Published: almost 8 years ago

10.3389/fonc.2021.614927

A Novel DNA Methylation Signature as an Independent Prognostic Factor in Muscle-Invasive Bladder Cancer
Cited by: 5
Author(s): Zhijie Xu, Hemant Gujar, Guanghou Fu, Hamed Ahmadi, Sumeet Bhanvadia, Daniel J. Weisenberger, Baiye Jin, Parkash S. Gill, Inderbir S. Gill, Siamak Daneshmand, Kimberly D. Siegmund, Gangning Liang
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-019-53428-3

Immune cell type, cell activation, and single cell heterogeneity revealed by label-free optical methods
Cited by: 10
Author(s): Nicolas Pavillon, Nicholas I. Smith
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers11121886

Cancer Is Associated with Alterations in the Three-Dimensional Organization of the Genome
Cited by: 13
Author(s): Lifei Li, Nicolai K H Barth, Christian Pilarsky, Leila Taher
Software Mentions: 3
Published: almost 5 years ago

10.2196/12214

Improved Real-Time Influenza Surveillance: Using Internet Search Data in Eight Latin American Countries
Cited by: 27
Author(s): Leonardo Clemente, Fred Lu, Mauricio Santillana
Software Mentions: 3
Published: over 5 years ago

10.1200/PO.19.00206

Model Combining Tumor Molecular and Clinicopathologic Risk Factors Predicts Sentinel Lymph Node Metastasis in Primary Cutaneous Melanoma
Cited by: 56
Author(s): Domenico Bellomo, Suzette M. Arias‐Mejias, Chilakamarti V. Ramana, Joel B. Heim, Enrica Quattrocchi, Sindhuja Sominidi‐Damodaran, Alina G. Bridges, Julia S. Lehman, Tina J. Hieken, James W. Jakub, Mark R. Pittelkow, David J. DiCaudo, Barbara A. Pockaj, Jason C. Sluzevich, Mark A. Cappel, Sanjay P. Bagaria, Charles Perniciaro, Félicia Tjien-Fooh, Martin H. van Vliet, Jvalini Dwarkasing, Alexander Meves
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0068071

Bayesian Mixture Models for Assessment of Gene Differential Behaviour and Prediction of pCR through the Integration of Copy Number and Gene Expression Data
Cited by: 0
Author(s): Filippo Trentini, Yuan Ji, Takayuki Inomata, Yuan Qi, Lajos Pusztai, Peter Müller
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0193871

Radiogenomics analysis identifies correlations of digital mammography with clinical molecular signatures in breast cancer
Cited by: 13
Author(s): Jose-Gerardo Tamez-Peña, Juan-Andrés Rodriguez-Rojas, Hugo Gómez-Rueda, Jose-Maria Celaya-Padilla, Roxana-Alicia Rivera-Prieto, Rebeca Palacios-Corona, Margarita Garza-Montemayor, Servando Cardona‐Huerta, Víctor Treviño
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0231609

Cytokine changes associated with the maternal immune activation (MIA) model of autism: A penalized regression approach
Cited by: 14
Author(s): Cristina Paraschivescu, Susana Barbosa, Thomas Lorivel, Nicolas Glaichenhaus, Laetitia Davidovic
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0103322

Analyzing Genome-Wide Association Studies with an FDR Controlling Modification of the Bayesian Information Criterion
Cited by: 20
Author(s): Erich Dolejsi, Bernhard Bodenstorfer, Florian Frommlet
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0178962

Explaining ethnic disparities in lung function among young adults: A pilot investigation
Cited by: 10
Author(s): Neil J. Saad, Jaymini Patel, Cosetta Minelli, Peter Burney
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0249916

Sparse Poisson regression via mixed-integer optimization
Cited by: 2
Author(s): Hiroki Saishu, Kiyoshi Kudo, Yasunari Takano
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0133627

Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging
Cited by: 87
Author(s): Chan C. Whiting, Janet Siebert, Aaron M. Newman, Hong Du, Ash A. Alizadeh, Jörg J. Goronzy, Cornelia M. Weyand, Eswar Krishnan, C. Garrison Fathman, Holden T. Maecker
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0188149

Characterization of rubella-specific humoral immunity following two doses of MMR vaccine using proteome microarray technology
Cited by: 6
Author(s): Iana H. Haralambieva, Michael J. Gibson, Richard B. Kennedy, Inna G. Ovsyannikova, Nathaniel D. Warner, Diane E. Grill, Gregory A. Poland
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0145042

Comparison of Plasma and Urine Biomarker Performance in Acute Kidney Injury
Cited by: 70
Author(s): Gunnar Schley, Carmen Köberle, Ekaterina Manuilova, Sandra Rutz, Christian Förster, Michael Weyand, Ivan Formentini, Rosemarie Kientsch-Engel, Kai‐Uwe Eckardt, Carsten Willam
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0029095

Phenotype Prediction Using Regularized Regression on Genetic Data in the DREAM5 Systems Genetics B Challenge
Cited by: 14
Author(s): Po‐Ru Loh, George Tucker, Bonnie Berger
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0009134

Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge
Cited by: 35
Author(s): Mika Gustafsson, Michael Hörnquist
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0040922

Genetic Markers Enhance Coronary Risk Prediction in Men: The MORGAM Prospective Cohorts
Cited by: 83
Author(s): Maria Hughes, Olli Saarela, Jan Stritzke, Frank Kee, Kaisa Silander, Norman Klopp, Jukka Kontto, Juha Karvanen, Christina Willenborg, Veikko Salomaa, Jarmo Virtamo, Philippe Amouyel, Dominique Arveiler, Jean Ferrières, Per-Gunner Wiklund, Jens Baumert, Barbara Thorand, Patrick Diemert, David‐Alexandre Trégouët, Christian Hengstenberg, Annette Peters, Alun Evans, Wolfgang Köenig, Jeanette Erdmann, Nilesh J. Samani, Kari Kuulasmaa, Heribert Schunkert
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0203133

The proteomic and metabolomic characterization of exercise-induced sweat for human performance monitoring: A pilot investigation
Cited by: 31
Author(s): Sean W. Harshman, Rhonda L. Pitsch, Zachary K Smith, Maegan L. O’Connor, Brian Geier, Anthony Qualley, Nicole M. Schaeublin, Molly Voelz Fischer, Jason J. Eckerle, Adam J. Strang, Jennifer A. Martin
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0034157

Metabonomic Profiles Delineate the Effect of Traditional Chinese Medicine Sini Decoction on Myocardial Infarction in Rats
Cited by: 78
Author(s): Guangguo Tan, Wenting Liao, Xin Dong, Genjing Yang, Zhenyu Zhu, Wuhong Li, Yifeng Chai, Ziyang Lou
Software Mentions: 2
Published: over 12 years ago

Projects: pypi: glmnet

Papers Mentioning glmnet 1,607