Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: glmnet
https://packages.ecosyste.ms/registries/pypi.org/packages/glmnet
Python wrapper for glmnet
5 versions
Latest release: over 4 years ago
3 dependent packages
3,992 downloads last month
Papers Mentioning glmnet 1,607
10.18632/aging.202922
A novel gene signature for prognosis prediction and chemotherapy response in patients with pancreatic cancerCited by: 4
Author(s): Hongcao Lin, Chonghui Hu, Shusen Zheng, Xiang Zhang, Rufu Chen, Quanbo Zhou
Software Mentions: 3
Published: over 3 years ago
10.1186/s12859-021-04016-8
CANTARE: finding and visualizing network-based multi-omic predictive modelsCited by: 2
Author(s): Janet Siebert, Martine Saint-Cyr, Sarah J. Borengasser, Brandie D. Wagner, Catherine Lozupone, Carsten Görg
Software Mentions: 3
Published: almost 4 years ago
10.3389/fdata.2021.572532
Evaluating the Effectiveness of Personalized Medicine With SoftwareCited by: 6
Author(s): Adam Kapelner, Justin Bleich, Alina Levine, Zachary D. Cohen, Robert J. DeRubeis, Richard A. Berk
Software Mentions: 3
Published: over 3 years ago
10.1186/s12881-017-0451-2
Performance of risk prediction for inflammatory bowel disease based on genotyping platform and genomic risk score methodCited by: 34
Author(s): Guo-Bo Chen, Sang Lee, Grant W. Montgomery, Naomi R. Wray, Peter M. Visscher, Richard B. Gearry, Ian C. Lawrance, Jane M. Andrews, Peter A. Bampton, Gillian Mahy, Sally Bell, Alissa Walsh, Susan J. Connor, Miles P. Sparrow, Lisa Bowdler, Lisa A. Simms, Krupa Krishnaprasad, Graham Radford‐Smith, G. Moser
Software Mentions: 3
Published: about 7 years ago
10.4172/jpb.1000370
Mining the Breast Cancer Proteome for Predictors of Drug SensitivityCited by: 7
Author(s): Leslie C Timpe Dian Li, Ten Yang Yen Judi Wong
Software Mentions: 3
Published: almost 10 years ago
10.1038/srep43752
Noninvasive scoring system for significant inflammation related to chronic hepatitis BCited by: 6
Author(s): Mei‐Zhu Hong, Linglong Ye, Lixin Jin, Yandan Ren, Xiang Yu, Xiaobin Liu, Ru-Mian Zhang, Kuangnan Fang, Jin‐Shui Pan
Software Mentions: 3
Published: over 7 years ago
10.1186/s12879-018-3182-x
Screening swabs surpass traditional risk factors as predictors of MRSA bacteremiaCited by: 8
Author(s): Guillaume Butler‐Laporte, Matthew P Cheng, Emily G. McDonald, Todd C. Lee
Software Mentions: 3
Published: over 6 years ago
10.1186/s12885-021-08558-1
A novel risk score system for prognostic evaluation in adenocarcinoma of the oesophagogastric junction: a large population study from the SEER database and our centerCited by: 0
Author(s): Jun Wang, Le Shi, Jing Chen, Beidi Wang, Jia Qi, Guofeng Chen, Muxing Kang, Hang Zhang, Xiaoli Jin, Yi Huang, Zhiqing Zhao, Jianfeng Chen, Bin Song, Jian Chen
Software Mentions: 3
Published: over 3 years ago
10.1017/S0950268815000710
Shrinking a large dataset to identify variables associated with increased risk of Plasmodium falciparum infection in Western KenyaCited by: 4
Author(s): Marlène Tremblay, James Dahm, C. N. Wamae, William A. de Glanville, Eric M. Fèvre, Dörte Döpfer
Software Mentions: 3
Published: over 9 years ago
10.18632/aging.103491
Genome-wide analyses of the prognosis-related mRNA alternative splicing landscape and novel splicing factors based on large-scale low grade glioma cohortCited by: 8
Author(s): Wangrui Liu, Chuanyu Li, Wenhao Xu, Xiaojuan Liu, Hai-Dan Tang, Haiyang Huang
Software Mentions: 3
Published: over 4 years ago
10.1186/s40644-020-00320-3
A CT-based radiomics nomogram for prediction of lung adenocarcinomas and granulomatous lesions in patient with solitary sub-centimeter solid nodulesCited by: 26
Author(s): Xiangmeng Chen, Feng Bao, Yehang Chen, Kunfeng Liu, Kunwei Li, Xiaobei Duan, Yongqiang Hao, Enming Cui, Zhuangsheng Liu, Chaotong Zhang, Wansheng Long, Xueguo Liu
Software Mentions: 3
Published: over 4 years ago
10.1186/s12864-018-4580-6
Clustering multilayer omics data using MuNCutCited by: 12
Author(s): Sebastian J. Teran Hidalgo, Shuangge Ma
Software Mentions: 3
Published: over 6 years ago
10.1186/s12885-020-06728-1
A key genomic signature associated with lymphovascular invasion in head and neck squamous cell carcinomaCited by: 11
Author(s): Jian Zhang, Hua Lin, Huali Jiang, Hualong Jiang, Tao Xie, Baiyao Wang, Xiaoting Huang, Jie Lin, Anan Xu, Rong Li, Jiexia Zhang, Yawei Yuan
Software Mentions: 3
Published: over 4 years ago
10.1186/s13072-017-0133-5
Transcription and chromatin determinants of de novo DNA methylation timing in oocytesCited by: 62
Author(s): Lenka Gahurová, Shin-ichi Tomizawa, Sébastien A. Smallwood, Kathleen R. Stewart-Morgan, Heba Saadeh, Jeesun Kim, Simon Andrews, Taiping Chen, Gavin Kelsey
Software Mentions: 3
Published: over 7 years ago
10.3389/fonc.2020.558428
Preoperatively Estimating the Malignant Potential of Mediastinal Lymph Nodes: A Pilot Study Toward Establishing a Robust Radiomics Model Based on Contrast-Enhanced CT ImagingCited by: 2
Author(s): Mengshi Dong, Gang Hou, Li Shu, Nan Li, Lina Zhang, Ke Xu
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12885-020-07489-7
Development and validation of a fourteen- innate immunity-related gene pairs signature for predicting prognosis head and neck squamous cell carcinomaCited by: 18
Author(s): Fujun Zhang, Yu Liu, Yixin Yang, Kai Yang
Software Mentions: 3
Published: about 4 years ago
10.3389/fgene.2019.01039
Genetic Study of Severe Prolonged Lymphopenia in Multiple Sclerosis Patients Treated With Dimethyl FumarateCited by: 3
Author(s): Dipen Sangurdekar, Chao Sun, Helen McLaughlin, Katherine Ayling-Rouse, Norm Allaire, M. A. Penny, Paola G. Bronson
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-021-93869-3
Associations between lipids in selected brain regions, plasma miRNA, and behavioral and cognitive measures following 28Si ion irradiationCited by: 7
Author(s): Jessica Minnier, Mark R. Emmett, Ruby Perez, Liang Ding, Brooke L. Barnette, Rianna E. Larios, Changjin Hong, Tae Hyun Hwang, Yongjia Yu, Christina M. Fallgren, Michael D. Story, Michael M. Weil, Jacob Raber
Software Mentions: 3
Published: over 3 years ago
10.18632/oncotarget.27301
Pre-surgical connectome features predict IDH status in diffuse gliomasCited by: 12
Author(s): Shelli R. Kesler, Rebecca Harrison, Melissa Petersen, Vikram Rao, Hannah Dyson, Kristin Alfaro-Munoz, Shiao Pei Weathers, John de Groot
Software Mentions: 3
Published: about 5 years ago
10.1186/s40644-019-0197-5
CT-based peritumoral radiomics signatures to predict early recurrence in hepatocellular carcinoma after curative tumor resection or ablationCited by: 105
Author(s): Quanyuan Shan, Hang-Tong Hu, Shi‐Ting Feng, Zhenpeng Peng, Shu‐Ling Chen, Qian Zhou, Xin Li, Xian-Jin Xie, Ming‐De Lu, Wei Wang, Ming Kuang
Software Mentions: 3
Published: over 5 years ago
10.1007/s00405-019-05687-z
Prediction of aspiration in dysphagia using logistic regression: oral intake and self-evaluationCited by: 9
Author(s): Bas J. Heijnen, Stefan Böhringer, Renée Speyer
Software Mentions: 3
Published: about 5 years ago
10.3390/jcm10194393
Clinical Predictors of Prolonged Hospital Stay in Patients with Myasthenia Gravis: A Study Using Machine Learning AlgorithmsCited by: 10
Author(s): Che-Cheng Chang, Jiann‐Horng Yeh, Yeng Chen, Mao-Jhen Jhou, Chi-Jie Lu
Software Mentions: 3
Published: about 3 years ago
10.1186/1471-2164-15-S7-S2
Computational identification of multi-omic correlates of anticancer therapeutic responseCited by: 31
Author(s): Lindsay Stetson, Taylor M. Pearl, Yanwen Chen, Jill S. Barnholtz‐Sloan
Software Mentions: 3
Published: about 10 years ago
10.15252/msb.20178064
Large‐scale image‐based profiling of single‐cell phenotypes in arrayed CRISPR‐Cas9 gene perturbation screensCited by: 55
Author(s): Reinoud E. A. de Groot, Joel Lüthi, Helen Lindsay, René Holtackers, Lucas Pelkmans
Software Mentions: 3
Published: almost 7 years ago
10.3389/fphar.2020.602030
A Novel Text-Mining Approach for Retrieving Pharmacogenomics Associations From the LiteratureCited by: 3
Author(s): Maria‐Theodora Pandi, Peter J. van der Spek, Maria Koromina, George P. Patrinos
Software Mentions: 3
Published: about 4 years ago
10.3389/fphys.2015.00389
Different Predictors of Right and Left Ventricular Metabolism in Healthy Middle-Aged MenCited by: 9
Author(s): Marja A. Heiskanen, Tuija Leskinen, Jari-Joonas Eskelinen, Ilkka Heinonen, Eliisa Löyttyniemi, Kirsi A. Virtanen, Jussi P. Pärkkä, Jarna C. Hannukainen, Kari K. Kalliokoski
Software Mentions: 3
Published: almost 9 years ago
10.1093/jrr/rrz027
CT-based radiomic signatures for prediction of pathologic complete response in esophageal squamous cell carcinoma after neoadjuvant chemoradiotherapyCited by: 49
Author(s): Yang Zy, Binghui He, Xinyu Zhuang, Xiaoying Gao, Dandan Wang, Mei Li, Zhongqiu Lin, Ren Luo
Software Mentions: 3
Published: over 5 years ago
10.1186/1471-2164-16-S8-S5
Bioinformatics analysis of thousands of TCGA tumors to determine the involvement of epigenetic regulators in human cancerCited by: 30
Author(s): Florian Gnad, Sophia Doll, Gerard Manning, David Arnott, Zemin Zhang
Software Mentions: 3
Published: over 9 years ago
10.1007/s00787-017-0972-4
Risk factors for comorbid oppositional defiant disorder in attention-deficit/hyperactivity disorderCited by: 26
Author(s): Siri D. S. Noordermeer, Marjolein Luman, Wouter D. Weeda, Jan K. Buitelaar, Jennifer S. Richards, Catharina A. Hartman, Pieter J. Hoekstra, Barbara Franke, Dirk J. Heslenfeld, Jaap Oosterlaan
Software Mentions: 3
Published: over 7 years ago
10.3390/ijms21072517
A Machine Learning-Based Identification of Genes Affecting the Pharmacokinetics of Tacrolimus Using the DMETTM Plus PlatformCited by: 10
Author(s): Jeong‐An Gim, Yonghan Kwon, Hyun A. Lee, Kyeong‐Ryoon Lee, Soohyun Kim, Yuni Choi, Yu Kyong Kim, Howard Lee
Software Mentions: 3
Published: over 4 years ago
10.1186/s12859-015-0467-6
A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analysesCited by: 16
Author(s): Jyoti Shankar, Sebastian Szpakowski, Norma V. Solis, Stephanie Mounaud, Honghong Liu, Liliana Losada, William C. Nierman, Scott G. Filler
Software Mentions: 3
Published: almost 10 years ago
10.1186/s12967-020-02255-6
Development and validation of a novel immune-related prognostic model in hepatocellular carcinomaCited by: 60
Author(s): Zheng Wang, Jie Zhu, Yongjuan Liu, Changhong Liu, Wenqi Wang, Fengzhe Chen, Lixian Ma
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0112943
Performance of Forest Bryophytes with Different Geographical Distributions Transplanted across a Topographically Heterogeneous LandscapeCited by: 11
Author(s): C. Johan Dahlberg, Johan Ehrlén, Kristoffer Hylander
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pcbi.1006599
Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limitedCited by: 26
Author(s): Dave Osthus, Ashlynn R. Daughton, Reid Priedhorsky
Software Mentions: 3
Published: almost 6 years ago
10.3389/fpls.2021.729645
Improving Quantitative Traits in Self-Pollinated Crops Using Simulation-Based Selection With Minimal CrossingCited by: 1
Author(s): Daisuke Sekine, Masayuki Tsuda, Shiori Yabe, Takehiko Shimizu, Kayo Machita, Masayasu Saruta, Tetsuya Yamada, Masao Ishimoto, Hiroyoshi Iwata, Akito Kaga
Software Mentions: 3
Published: about 3 years ago
10.1186/s13195-021-00814-7
An integrative multi-omics approach reveals new central nervous system pathway alterations in Alzheimer’s diseaseCited by: 40
Author(s): Christopher Clark, Loïc Dayon, Mojgan Masoodi, Gene L. Bowman, Julius Popp
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pcbi.1009343
BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome dataCited by: 3
Author(s): Chenhao Li, Tamar V. Av-Shalom, Jun Wei Gerald Tan, Junmei Samantha Kwah, Kern Rei Chng, Niranjan Nagarajan
Software Mentions: 3
Published: about 3 years ago
10.1186/s12967-020-02366-0
Development and validation of a hypoxia-immune-based microenvironment gene signature for risk stratification in gastric cancerCited by: 59
Author(s): Yifan Liu, Jianhua Wu, Weiwei Huang, Shao‐Wen Weng, Baochun Wang, Yiming Chen, Hao Wang
Software Mentions: 3
Published: over 4 years ago
10.1042/BSR20202376
A six-gene-based signature for breast cancer radiotherapy sensitivity estimationCited by: 8
Author(s): Xing Chen, Junjie Zheng, Min Zhuo, Ailong Zhang, Zhebin You
Software Mentions: 3
Published: almost 4 years ago
10.18632/aging.101187
Methylome-wide association study of whole blood DNA in the Norfolk Island isolate identifies robust loci associated with ageCited by: 26
Author(s): Miles C. Benton, Heidi G. Sutherland, Donia Macartney-Coxson, Larisa M. Haupt, Rodney Arthur Lea, Lyn R. Griffiths
Software Mentions: 3
Published: over 7 years ago
10.18632/aging.102049
Placental epigenetic clocks: estimating gestational age using placental DNA methylation levelsCited by: 69
Author(s): Yunsung Lee, Sanaa Choufani, Rosanna Weksberg, Samantha L. Wilson, Victor Yuan, Amber Burt, Carmen J. Marsit, Ake T. Lu, Beate Ritz, Jon Bohlin, Håkon K. Gjessing, Jennifer R. Harris, Per Magnus, Alexandra M. Binder, Wendy P. Robinson, Astanand Jugessur, Steve Horvath
Software Mentions: 3
Published: over 5 years ago
10.1042/BSR20211053
Development and validation of LRP1B mutation-associated prognostic model for hepatocellular carcinomaCited by: 4
Author(s): Jian Xu, Xiaomin Shen, Bo Zhang, Rui Su, Mingxuan Cui, Yan Liu, Yu Cao
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pone.0135284
Integrative Analysis of MicroRNA and mRNA Data Reveals an Orchestrated Function of MicroRNAs in Skeletal Myocyte Differentiation in Response to TNF-α or IGF1Cited by: 20
Author(s): Swanhild U. Meyer, Steffen Sass, Nikola S. Mueller, Stefan Krebs, Stefan Bauersachs, Sebastian Kaiser, Helmut Blum, Christian Thirion, Sabine Krause, Fabian J. Theis, Michael W. Pfaffl
Software Mentions: 3
Published: over 9 years ago
10.3389/fimmu.2021.637933
Analysis of m6A-Related Signatures in the Tumor Immune Microenvironment and Identification of Clinical Prognostic Regulators in Adrenocortical CarcinomaCited by: 51
Author(s): Y. Jin, Zhanwang Wang, Dong He, Yuxing Zhu, Xiaofang Hu, Lian Gong, Mengqing Xiao, Xingyu Chen, Ying Cheng, Ke Cao
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0127433
Data Mining Approaches for Genomic Biomarker Development: Applications Using Drug Screening Data from the Cancer Genome Project and the Cancer Cell Line EncyclopediaCited by: 25
Author(s): David G. Covell
Software Mentions: 3
Published: over 9 years ago
10.3389/fpls.2020.01071
Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments?Cited by: 7
Author(s): Manuela Haas, Heike Sprenger, Ellen Zuther, R J Peters, Sylvia Seddig, Dirk Walther, Joachim Kopka, Dirk K. Hincha, Karin Köhl
Software Mentions: 3
Published: over 4 years ago
10.3390/cancers12113204
Predictive Values of Blood-Based RNA Signatures for the Gemcitabine Response in Advanced Pancreatic CancerCited by: 2
Author(s): David Piquemal, Florian Noguier, Fabien Pierrat, Roman Bruno, Jérôme Cros
Software Mentions: 3
Published: about 4 years ago
10.3389/fpsyt.2016.00034
Utility of Machine-Learning Approaches to Identify Behavioral Markers for Substance Use Disorders: Impulsivity Dimensions as Predictors of Current Cocaine DependenceCited by: 53
Author(s): Woo-Young Ahn, Divya Ramesh, F. Gerard Moeller, Jasmin Vassileva
Software Mentions: 3
Published: over 8 years ago
10.1155/2021/5554436
Multiomics Profiling and Clustering of Low-Grade Gliomas Based on the Integrated Stress StatusCited by: 2
Author(s): Xiaolin Ren, Xin Chen, Chen Zhu, Anhua Wu
Software Mentions: 3
Published: over 3 years ago
10.3389/fpsyt.2019.00953
A Biomarker for Alzheimer’s Disease Based on Patterns of Regional Brain AtrophyCited by: 24
Author(s): Stefan Frenzel, Katharina Wittfeld, Mohamad Habes, Johanna Klinger-König, Robin Bülow, Henry Völzke, Hans J. Grabe
Software Mentions: 3
Published: almost 5 years ago
10.1155/2019/3616852
Radiomics Signatures of Computed Tomography Imaging for Predicting Risk Categorization and Clinical Stage of ThymomasCited by: 21
Author(s): Xihai Wang, Wei Sun, Hongyuan Liang, Xiaonan Mao, Zaiming Lu
Software Mentions: 3
Published: over 5 years ago
10.3389/fimmu.2021.685370
Influence of Tumor Immune Infiltration on Immune Checkpoint Inhibitor Therapeutic Efficacy: A Computational Retrospective StudyCited by: 26
Author(s): Rong Liu, Fang Yang, Ji‐Ye Yin, Yingzi Liu, Wei Zhang, Hong‐Hao Zhou
Software Mentions: 3
Published: over 3 years ago
10.1186/s12859-019-2743-3
AUTALASSO: an automatic adaptive LASSO for genome-wide predictionCited by: 17
Author(s): Patrik Waldmann, Maja Ferenčaković, Gábor Mészáros, Negar Khayatzadeh, Ino Čurik, Johann Sölkner
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0243250
Medical students in distress: The impact of gender, race, debt, and disabilityCited by: 27
Author(s): Nikhil Rajapuram, Simone Langness, Megan Marshall, Amanda Sammann
Software Mentions: 3
Published: almost 4 years ago
10.1007/s00259-020-05075-4
Decoding COVID-19 pneumonia: comparison of deep learning and radiomics CT image signaturesCited by: 61
Author(s): Hongmei Wang, Lu Wang, Edward H. Lee, Jimmy Zheng, Wei Zhang, Safwan Halabi, Chunlei Liu, Kan Deng, Jiangdian Song, Kristen W. Yeom
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-018-38441-2
Elastic net-based prediction of IFN-β treatment response of patients with multiple sclerosis using time series microarray gene expression profilesCited by: 11
Author(s): Arika Fukushima, Masahiro Sugimoto, Satoru Hiwa, Tomoyuki Hiroyasu
Software Mentions: 3
Published: almost 6 years ago
10.3389/fmed.2021.686885
Genome-Wide Analysis Reveals Hypoxic Microenvironment Is Associated With Immunosuppression in Poor Survival of Stage II/III Colorectal Cancer PatientsCited by: 4
Author(s): Yufeng Chen, Zhaoliang Yu, Min‐Yi Lv, Bin Zheng, Yongtao Tan, Jia Ke, Xuanhui Liu, Zerong Cai, Yifeng Zou, Ping Lan, Xiaojian Wu, Feng Gao
Software Mentions: 3
Published: over 3 years ago
10.1155/2021/6633289
A Robust Circular RNA-Associated Three-Gene Prognostic Signature for Patients with Gastric CancerCited by: 2
Author(s): Li Yang, Rui Li, Xiuli Wang, Yuan Yuan, Yangmei Zhang
Software Mentions: 3
Published: over 3 years ago
10.3389/fcell.2021.703969
A Risk Score Model Incorporating Three m6A RNA Methylation Regulators and a Related Network of miRNAs-m6A Regulators-m6A Target Genes to Predict the Prognosis of Patients With Ovarian CancerCited by: 12
Author(s): Qian Li, Chen Ren, Yan‐Nan Chen, Yang Li, Feng Zhang, Bao-Jin Wang, Yuanhang Zhu, Feiyan Li, Jun J. Yang, Zhen-An Zhang
Software Mentions: 3
Published: about 3 years ago
10.1155/2021/6650107
Tumor Microenvironment Subtypes and Immune-Related Signatures for the Prognosis of Breast CancerCited by: 2
Author(s): Yiqun Han, Jiayu Wang, Binghe Xu
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pcbi.1003908
Regression Analysis of Combined Gene Expression Regulation in Acute Myeloid LeukemiaCited by: 58
Author(s): Yue Li, Minggao Liang, Zhaolei Zhang
Software Mentions: 3
Published: about 10 years ago
10.3389/fpsyg.2017.01726
Deep Convolutional Neural Networks Outperform Feature-Based But Not Categorical Models in Explaining Object Similarity JudgmentsCited by: 99
Author(s): Kamila M. Jozwik, Nikolaus Kriegeskorte, Katherine R. Storrs, Marieke Mur
Software Mentions: 3
Published: about 7 years ago
10.1186/s12986-020-00519-y
Proposal of a new equation for estimating resting energy expenditure of acute kidney injury patients on dialysis: a machine learning approachCited by: 4
Author(s): Daniela Ponce, Cassiana Regina de Góes, Luís Gustavo Modelli de Andrade
Software Mentions: 3
Published: about 4 years ago
10.3390/cancers12071894
Pre-Treatment T2-WI Based Radiomics Features for Prediction of Locally Advanced Rectal Cancer Non-Response to Neoadjuvant Chemoradiotherapy: A Preliminary StudyCited by: 35
Author(s): Bianca Petresc, Andrei Lebovici, Cosmin Caraiani, Diana Feier, Florin Graur, Mircea Buruian
Software Mentions: 3
Published: over 4 years ago
10.3390/children8030234
Adolescents’ Explanatory Models for Headaches and Associations with Behavioral and Emotional OutcomesCited by: 5
Author(s): Verena Neß, Anna Könning, Gerrit Hirschfeld, Julia Wager
Software Mentions: 3
Published: over 3 years ago
10.1186/s13195-020-00657-8
Association of glial and neuronal degeneration markers with Alzheimer’s disease cerebrospinal fluid profile and cognitive functionsCited by: 17
Author(s): Unnur D. Teitsdottir, Marıá K. Jónsdóttir, Sigrún H. Lund, Taher Darreh‐Shori, Jón Snædal, Petur H. Petersen
Software Mentions: 3
Published: over 4 years ago
10.1155/2020/5310793
Identification of a 5-Gene Metabolic Signature for Predicting Prognosis Based on an Integrated Analysis of Tumor Microenvironment in Lung AdenocarcinomaCited by: 14
Author(s): Xiaolin Yu, Xiaomei Zhang, Yanxia Zhang
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0229509
Comparing spatial regression to random forests for large environmental data setsCited by: 31
Author(s): Eric W. Fox, Jay M. Ver Hoef, A.R. Olsen
Software Mentions: 3
Published: over 4 years ago
10.1007/s00125-019-05052-z
Predicting renal disease progression in a large contemporary cohort with type 1 diabetes mellitusCited by: 21
Author(s): Marco Colombo, Stuart J. McGurnaghan, Samira Bell, Finlay MacKenzie, A. W. Patrick, John R. Petrie, John McKnight, Sandra MacRury, Jamie P. Traynor, Wendy Metcalfe, Paul McKeigue, Helen M. Colhoun
Software Mentions: 3
Published: almost 5 years ago
10.3390/ijms21113814
Urinary MicroRNAs as Potential Markers for Non-Invasive Diagnosis of Bladder CancerCited by: 13
Author(s): Kati Erdmann, Karsten Salomo, Anna Klimová, Ulrike Heberling, Andrea Lohse-Fischer, Romy Fuehrer, Christian Thomas, Ingo Roeder, Michael Froehner, Manfred P. Wirth, Susanne Fuessel
Software Mentions: 3
Published: over 4 years ago
10.3389/fmolb.2021.691143
Development and Validation of a Prognostic Classifier Based on Lipid Metabolism–Related Genes in Gastric CancerCited by: 15
Author(s): Xiaoli Wei, Tianzhi Luo, Jianing Li, Zi Xue, Yun Wang, You Zhang, Run‐Cong Nie, Chuan Peng
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-85991-z
Methodological considerations for identifying multiple plasma proteins associated with all-cause mortality in a population-based prospective cohortCited by: 3
Author(s): Isabel Drake, George Hindy, Peter Almgren, Gunnar Engström, Jan Nilsson, Olle Melander, Marju Orho‐Melander
Software Mentions: 3
Published: over 3 years ago
10.1155/2016/8209453
High Dimensional Variable Selection with Error ControlCited by: 8
Author(s): Sangjin Kim, Susan Halabi
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0155354
Inferring RBP-Mediated Regulation in Lung Squamous Cell CarcinomaCited by: 4
Author(s): Atefeh Lafzi, Hilal Kazan
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pcbi.1007616
DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learningCited by: 46
Author(s): Janine Arloth, Gökçen Eraslan, Till F. M. Andlauer, Jade Martins, Stella Iurato, Brigitte Kühnel, Mélanie Waldenberger, Josef Frank, Ralf Gold, Bernhard Hemmer, Felix Luessi, Sandra Nischwitz, Friedemann Paul, Heinz Wiendl, Christian Gieger, Stefanie Heilmann‐Heimbach, Tim Kacprowski, Matthias Laudes, Thomas Meitinger, Annette Peters, Rajesh Rawal, Konstantin Strauch, Susanne Lucae, Bertram Müller‐Myhsok, Marcella Rietschel, Fabian J. Theis, Elisabeth B. Binder, Nikola S. Mueller
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-021-84048-5
Utility of CT texture analysis to differentiate olfactory neuroblastoma from sinonasal squamous cell carcinomaCited by: 4
Author(s): Masaki Ogawa, Satoshi Osaga, Norio Shiraki, Daisuke Kawakita, Nobuhiro Hanai, Tsuneo Tamaki, Satoshi Tsukahara, Tatsuro Kawaguchi, Misugi Urano, Yuta Shibamoto
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-83167-3
Radiomics signature on CECT as a predictive factor for invasiveness of lung adenocarcinoma manifesting as subcentimeter ground glass nodulesCited by: 9
Author(s): Wufei Chen, Ming Li, Dingbiao Mao, Xianping Ge, Jiaofeng Wang, Min Tan, Wenrui Ma, Xuemei Huang, Jingyu Lu, Cheng Li, Yanqing Hua, Hao Wu
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-018-35232-7
Lipoprotein markers associated with disability from multiple sclerosisCited by: 27
Author(s): Arie Gafson, Thomas Thorne, Colonel Mckechnie, Beatriz Jiménez, Richard Nicholas, Paul M. Matthews
Software Mentions: 3
Published: about 6 years ago
10.18632/aging.102544
Prognostic implications of autophagy-associated gene signatures in non-small cell lung cancerCited by: 106
Author(s): Yang Liu, Ligao Wu, Haijiao Ao, Meng Zhao, Xue Leng, Mingdong Liu, Jianqun Ma, Jinhong Zhu
Software Mentions: 3
Published: almost 5 years ago
10.1155/2016/2491671
Classification of Non-Small Cell Lung Cancer Using Significance Analysis of Microarray-Gene Set Reduction AlgorithmCited by: 14
Author(s): Lei Zhang, Linlin Wang, Bochuan Du, Tianjiao Wang, Pu Tian, Suyan Tian
Software Mentions: 3
Published: almost 9 years ago
10.1186/s12864-018-5408-0
Probing transcription factor combinatorics in different promoter classes and in enhancersCited by: 24
Author(s): Jimmy Vandel, Océane Cassan, Sophie Lèbre, Charles-Henri Lecellier, Laurent Bréhélin
Software Mentions: 3
Published: almost 6 years ago
10.1186/s41512-016-0002-x
Validation and updating of risk models based on multinomial logistic regressionCited by: 23
Author(s): Ben Van Calster, Kirsten Van Hoorde, Yvonne Vergouwe, S. Bobdiwala, G. Condous, E. Kirk, T. Bourne, Ewout W. Steyerberg
Software Mentions: 3
Published: almost 8 years ago
10.1111/jcmm.16323
Construction of a robust prognostic model for adult adrenocortical carcinoma: Results from bioinformatics and real‐world dataCited by: 8
Author(s): Xi Tian, Wenhao Xu, Aihetaimujiang Anwaier, Hongkai Wang, Fangning Wan, Dalong Cao, Wenjie Luo, Guohai Shi, Yuanyuan Qu, Hai-Liang Zhang, Dingwei Ye
Software Mentions: 3
Published: over 3 years ago
10.1186/s12885-021-08539-4
A methylation-based nomogram for predicting survival in patients with lung adenocarcinomaCited by: 5
Author(s): Xuelong Wang, Bin Zhou, Yuxin Xia, Jianjun Zuo, Yanchao Liu, Xin Bi, Xiong Luo, Chengwei Zhang
Software Mentions: 3
Published: over 3 years ago
10.1002/cam4.2921
A signature of 33 immune‐related gene pairs predicts clinical outcome in hepatocellular carcinomaCited by: 34
Author(s): Xiao-Yan Sun, Shuanbao Yu, Huapeng Zhang, Jie Li, Wenzhi Guo, Shuijun Zhang
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41416-020-0864-0
Nine-factor-based immunohistochemistry classifier predicts recurrence for early-stage hepatocellular carcinoma after curative resectionCited by: 10
Author(s): Wei‐Ren Liu, Min Tian, Zheng Tang, Yuan Fang, Yu‐Fu Zhou, Shushu Song, Xi‐Fei Jiang, Han Wang, Chenyang Tao, Pei‐Yun Zhou, Wei‐Feng Qu, Zhen–Bin Ding, Yuan‐Fei Peng, Jian Zhou, Jia Fan, Ying‐Hong Shi
Software Mentions: 3
Published: over 4 years ago
10.3390/metabo9070143
Statistical Workflow for Feature Selection in Human Metabolomics DataCited by: 50
Author(s): Joseph Antonelli, Brian Claggett, Mir Henglin, Andy Kim, Gavin Ovsak, Nicole J. Kim, Katherine Deng, Kevin Rao, Octavia Tyagi, Jeramie D. Watrous, Kim A. Lagerborg, Pavel Hushcha, Olga V. Demler, Samia Mora, Teemu J. Niiranen, Alexandre C. Pereira, Mohit Jain, Susan Cheng
Software Mentions: 3
Published: over 5 years ago
10.1155/2020/1570862
Establishment and Investigation of a Multiple Gene Expression Signature to Predict Long-Term Survival in Pancreatic CancerCited by: 1
Author(s): Zhiqiang Zhang, Jiangning Gu, Menghong Yin, Di Wang, Chi Ma, Jian Du, Zhikun Lin, Siling Hu, Xuelong Wang, Ying Li, Guang Tan, Haifeng Luo, Gang Wei
Software Mentions: 3
Published: about 4 years ago
10.1007/s11306-021-01821-3
Systematic selection of competing metabolomics methods in a metabolite-sensory relationship studyCited by: 3
Author(s): Nasser Davarzani, Carmen Díez-Simón, Justus L. Großmann, Doris M. Jacobs, Rudi van Doorn, M. A. Berg, Age K. Smilde, Roland Mumm, Robert D. Hall, Johan A. Westerhuis
Software Mentions: 3
Published: about 3 years ago
10.7717/peerj.7838
Unfold: an integrated toolbox for overlap correction, non-linear modeling, and regression-based EEG analysisCited by: 87
Author(s): Benedikt V. Ehinger, Olaf Dimigen
Software Mentions: 3
Published: about 5 years ago
10.18632/oncotarget.27616
Tumor microRNA profile and prognostic value for lymph node metastasis in oral squamous cell carcinoma patientsCited by: 10
Author(s): Kelly Yi Ping Liu, Siyi Zhu, Denise Brooks, Reanne Bowlby, J.S. Durham, Yussanne Ma, Richard A. Moore, Andrew J. Mungall, Steven J.M. Jones, Catherine F. Poh
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0219128
Linking forest management to moose population trends: The role of the nutritional landscapeCited by: 21
Author(s): Thomas V. Schrempp, Janet L. Rachlow, Timothy R. Johnson, Lisa A. Shipley, Ryan A. Long, Jocelyn L. Aycrigg, Mark A. Hurley
Software Mentions: 3
Published: over 5 years ago
10.1155/2021/6674471
Pretreatment Prediction of Relapse Risk in Patients with Osteosarcoma Using Radiomics Nomogram Based on CT: A Retrospective Multicenter StudyCited by: 8
Author(s): Jin Liu, Tao Lian, Haimei Chen, Xiaohong Wang, Xianyue Quan, Yu Deng, Juan Yao, Ming Lu, Qiang Yao, Qianjin Feng, Yinghua Zhao
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0109033
Classification and Visualization Based on Derived Image Features: Application to Genetic SyndromesCited by: 8
Author(s): Brunilda Balliu, Rolf P. Würtz, Bernhard Horsthemke, Dagmar Wieczorek, Stefan Böhringer
Software Mentions: 3
Published: about 10 years ago
10.3390/genes9020078
DNA Methylation and All-Cause Mortality in Middle-Aged and Elderly Danish TwinsCited by: 26
Author(s): Anne Marie Svane, Mette Soerensen, Jesper Lund, Qihua Tan, Juulia Jylhävä, Yunzhang Wang, Nancy L. Pedersen, Sara Hägg, Birgit Debrabant, Ian J. Deary, Kaare Christensen, Lene Christiansen, Jacob Hjelmborg
Software Mentions: 3
Published: almost 7 years ago
10.3389/fgene.2021.613890
Novel Hypoxia-Related Gene Signature for Risk Stratification and Prognosis in Hepatocellular CarcinomaCited by: 7
Author(s): Quanxiao Li, Limin Jin, Minghao Jin
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0205971
Subgroup identification in clinical trials via the predicted individual treatment effectCited by: 27
Author(s): Nicolás Ballarini, G Rosenkranz, Thomas Jaki, Franz König, Martin Posch
Software Mentions: 3
Published: about 6 years ago
10.7717/peerj.10320
Identification of a six-gene metabolic signature predicting overall survival for patients with lung adenocarcinomaCited by: 3
Author(s): Yuan Cao, Xiaomei Lü, Yue Li, Jia Fu, Hongyuan Li, Xiulin Li, Ziyou Chang, Sa Liu
Software Mentions: 3
Published: almost 4 years ago
10.1073/pnas.1811661116
Chloroplast competition is controlled by lipid biosynthesis in evening primrosesCited by: 32
Author(s): Johanna Sobanski, Patrick Giavalisco, Axel Fischer, Julia M. Kreiner, Dirk Walther, Mark Aurel Schöttler, Tommaso Pellizzer, Hieronim Golczyk, Toshihiro Obata, Ralph Bock, Barbara B. Sears, Stephan Greiner
Software Mentions: 3
Published: over 5 years ago
10.3390/genes11101181
In Silico Model for Chemical-Induced Chromosomal Damages Elucidates Mode of Action and Irrelevant PositivesCited by: 4
Author(s): Yuzo Fujita, Osamu Morita, Hiroshi Honda
Software Mentions: 3
Published: about 4 years ago