pypi: glmnet | Projects | Ecosyste.ms: Papers

10.1534/g3.120.401132

Origin Specific Genomic Selection: A Simple Process To Optimize the Favorable Contribution of Parents to Progeny
Cited by: 8
Author(s): Chin Jian Yang, Rajiv Sharma, Gregor Gorjanc, Sarah Hearne, W. Powell, Ian Mackay
Software Mentions: 4
Published: over 4 years ago

10.1534/g3.120.401733

Maximum <i>a posteriori</i> Threshold Genomic Prediction Model for Ordinal Traits
Cited by: 3
Author(s): Abelardo Montesinos‐López, Humberto Gutiérrez Pulido, Osval A. Montesinos-L֯ópez, J. Crossa
Software Mentions: 4
Published: about 4 years ago

10.1186/1471-2156-13-24

Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system
Cited by: 4
Author(s): Ross E. Curtis, Anuj Goyal, Eric P. Xing
Software Mentions: 4
Published: over 12 years ago

10.1038/s41420-018-0133-7

A two-microRNA-based signature predicts first-line chemotherapy outcomes in advanced colorectal cancer patients
Cited by: 14
Author(s): Jia Liu, Zhi Zuo, Wei Wang, Qi Zhao, Miao Zhen Qiu, Hui Luo, Zhan Hong Chen, Hai Yu Mo, Feng Wang, Dong Yang, Yun Wang, Wei Xiao, Qi Wu, Huai-Qiang Ju, Zhao Lei Zeng
Software Mentions: 4
Published: almost 6 years ago

10.1002/gepi.22374

Multi‐tissue transcriptome‐wide association studies
Cited by: 8
Author(s): Nastasiya F. Grinberg, Chris Wallace
Software Mentions: 4
Published: almost 4 years ago

10.1590/1678-4685-GMB-2018-0269

Large miRNA survival analysis reveals a prognostic four-biomarker signature for triple negative breast cancer
Cited by: 15
Author(s): Fernando Andrade, Akinori Nakata, Noriko Gotoh, André Fujita
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12985-021-01561-9

Lymphocyte–monocyte–neutrophil index: a predictor of severity of coronavirus disease 2019 patients produced by sparse principal component analysis
Cited by: 4
Author(s): Yingjie Qi, Jian-An Jia, Huiming Li, Nagen Wan, Shuqin Zhang, Xiaoling Ma
Software Mentions: 4
Published: over 3 years ago

10.1186/s12863-017-0533-3

Resampling-based tests for Lasso in genome-wide association studies
Cited by: 12
Author(s): Jaron Arbet, Matt McGue, Snigdhansu Chatterjee, Saonli Basu
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.102556

Robust immunoscore model to predict the response to anti-PD1 therapy in melanoma
Cited by: 14
Author(s): Run‐Cong Nie, Shu Qiang Yuan, Yun Wang, Yan Yu Cai, Shi Chen, Shu Man Li, Jie Zhou, Guo Ming Chen, Tian Qi Luo, Zhi Wei Zhou, Yuan Fang Li
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13059-017-1203-5

Multi-tissue DNA methylation age predictor in mouse
Cited by: 307
Author(s): Thomas M. Stubbs, Marc Jan Bonder, Anne-Katrien Stark, Felix Krueger, Ferdinand von Meyenn, Oliver Stegle, Wolf Reik
Software Mentions: 4
Published: over 7 years ago

10.1186/s13059-020-02006-2

Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets
Cited by: 29
Author(s): Brenda Marquina-Sanchez, Nikolaus Fortelny, Matthias Farlik, Andhira Vieira, Patrick Collombat, Christoph Bock, Stefan Kubicek
Software Mentions: 4
Published: over 4 years ago

10.1098/rstb.2019.0666

Neurons in primate prefrontal cortex signal valuable social information during natural viewing
Cited by: 4
Author(s): Geoffrey K. Adams, Wei Song Ong, J. M. Pearson, Karli Watson, Michael L. Platt
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12885-020-07194-5

A panel of DNA methylation signature from peripheral blood may predict colorectal cancer susceptibility
Cited by: 12
Author(s): Justina Ucheojor Onwuka, Dapeng Li, Yupeng Liu, Hao Huang, Jing Xu, Ying Liu, Yuanyuan Zhang, Yong Zhao
Software Mentions: 4
Published: over 4 years ago

10.1093/gigascience/giaa044

Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity
Cited by: 9
Author(s): Benjamin B. Chu, Kevin L. Keys, Christopher A. German, Hua Zhou, Jin Zhou, Eric M. Sobel, Janet S. Sinsheimer, Kenneth Lange
Software Mentions: 4
Published: over 4 years ago

10.1093/gigascience/giaa110

Interpreting k-mer–based signatures for antibiotic resistance prediction
Cited by: 12
Author(s): Magali Jaillard, Mattia Palmieri, Alex van Belkum, Pierre Mahé
Software Mentions: 4
Published: about 4 years ago

10.1093/gigascience/giab002

The Gene Expression Deconvolution Interactive Tool (GEDIT): accurate cell type quantification from gene expression data
Cited by: 26
Author(s): Brian B. Nadel, David Lopez, Dennis Montoya, Feiyang Ma, Hannah Waddel, Misha M Khan, Serghei Mangul, Matteo Pellegrini
Software Mentions: 4
Published: almost 4 years ago

10.1136/gutjnl-2016-313681

A novel prognostic model for transplant-free survival in primary sclerosing cholangitis
Cited by: 74
Author(s): E M de Vries, Junfeng Wang, Kate D. Williamson, Mariska Leeflang, Kirsten Boonstra, Rinse K. Weersma, Ulrich Beuers, Roger W. Chapman, Ronald B. Geskus, Cyriel Y. Ponsioen
Software Mentions: 4
Published: over 7 years ago

10.1186/s12885-021-08173-0

Comprehensive analyses of competing endogenous RNA networks reveal potential biomarkers for predicting hepatocellular carcinoma recurrence
Cited by: 3
Author(s): Ping Yan, Zuotian Huang, Tong Mou, Yunhai Luo, Yanyao Liu, Baoyong Zhou, Zhen-Rui Cao, Zhongjun Wu
Software Mentions: 4
Published: over 3 years ago

10.1038/s41437-021-00412-1

A guide for kernel generalized regression methods for genomic-enabled prediction
Cited by: 12
Author(s): Abelardo Montesinos‐López, Osval A. Montesinos-L֯ópez, J. Cricelio Montesinos-López, Carlos Flores-Cortés, Roberto De Rosa, J. Crossa
Software Mentions: 4
Published: over 3 years ago

10.3389/fnagi.2021.609043

Ongoing Oscillatory Electrophysiological Alterations in Frail Older Adults: A MEG Study
Cited by: 4
Author(s): Isabel Suárez-Méndez, Stefan Walter, David López‐Sanz, Natalia Pasquín, R. López Bernabé, Ernesto Castillo Gallo, Myriam Valdés, Francisco del Pozo, Fernando Maestú, Leocadio Rodrı́guez-Mañas
Software Mentions: 4
Published: almost 4 years ago

10.3390/ijms221910393

Relationships between Mitochondrial Function, AMPK, and TORC1 Signaling in Lymphoblasts with Premutation Alleles of the FMR1 Gene
Cited by: 2
Author(s): Paul R. Fisher, Claire Y. Allan, Oana Sanislav, Anna Atkinson, Kevin R.W. Ngoei, Bruce E. Kemp, Elsdon Storey, Danuta Z. Loesch, Sarah J. Annesley
Software Mentions: 4
Published: about 3 years ago

10.1001/jamanetworkopen.2018.6937

Machine Learning–Based Prediction of Clinical Outcomes for Children During Emergency Department Triage
Cited by: 150
Author(s): Tadahiro Goto, Carlos A. Camargo, Mohammad Kamal Faridi, Robert J. Freishtat, Kohei Hasegawa
Software Mentions: 4
Published: almost 6 years ago

10.3389/fdata.2021.672460

Comprehensive Data Integration Approach to Assess Immune Responses and Correlates of RTS,S/AS01-Mediated Protection From Malaria Infection in Controlled Human Malaria Infection Trials
Cited by: 5
Author(s): William Chad Young, Lindsay N. Carpp, Sidhartha Chaudhury, Jason A. Regules, Elke S. Bergmann‐Leitner, Christian F. Ockenhouse, Ulrike Wille-Reece, Allan C. deCamp, Ellis Hughes, Celia Mahoney, Suresh Pallikkuth, Savita Pahwa, S. Moses Dennison, Sarah V. Mudrak, S. Munir Alam, Kelly E. Seaton, Rachel L. Spreng, Jon Fallon, Ashlin Michell, Fernando Ulloa‐Montoya, Margherita Coccia, Erik Jongert, Galit Alter, Georgia D. Tomaras, Raphaël Gottardo
Software Mentions: 4
Published: over 3 years ago

10.1001/jamanetworkopen.2021.0591

A Pilot Study Using Frequent Inpatient Assessments of Suicidal Thinking to Predict Short-Term Postdischarge Suicidal Behavior
Cited by: 36
Author(s): Shirley B. Wang, Daniel D L Coppersmith, Evan M. Kleiman, Kate H. Bentley, Alexander J. Millner, Rebecca Fortgang, Patrick Mair, Walter Dempsey, Jeff C. Huffman, Matthew K. Nock
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-021-07911-8

Construction of the optimization prognostic model based on differentially expressed immune genes of lung adenocarcinoma
Cited by: 6
Author(s): Yuanliang Zhai, Bin Zhao, Yuzhen Wang, Lina Li, Jingjin Li, Li Xu, Linhan Chang, Qian Chen, Zhijun Liao
Software Mentions: 4
Published: over 3 years ago

10.7717/peerj.10812

Construction of an immune-related signature with prognostic value for colon cancer
Cited by: 2
Author(s): Yunxia Lv, Xinyi Wang, Yu Ren, Xiaorui Fu, Taiyuan Li, Qunguang Jiang
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-020-07331-0

LINC00649 underexpression is an adverse prognostic marker in acute myeloid leukemia
Cited by: 11
Author(s): Chao Guo, Ya-yue Gao, Qianqian Ju, Chunxia Zhang, Ming Gong, Zhenling Li
Software Mentions: 4
Published: about 4 years ago

10.1186/s12885-020-07712-5

Construction of a nine DNA repair-related gene prognostic classifier to predict prognosis in patients with endometrial carcinoma
Cited by: 7
Author(s): Jinhui Liu, Pinping Jiang, Xucheng Chen, Yujie Shen, Guoliang Cui, Ziyan Ma, Shaojie Zhao, Yan Zhang
Software Mentions: 4
Published: almost 4 years ago

10.1002/1878-0261.12158

Prognostic value of an immunohistochemical signature in patients with esophageal squamous cell carcinoma undergoing radical esophagectomy
Cited by: 20
Author(s): Meng Ji, Junhua Zhang, Yingjie Xiu, Yan Jin, Jiaqing Xiang, Yongzhan Nie, Shihua Fu, Kuaile Zhao
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13148-020-00898-2

Integrated epigenetic biomarkers in circulating cell-free DNA as a robust classifier for pancreatic cancer
Cited by: 28
Author(s): Feng Cao, Ailin Wei, Xiaofan Hu, Yijing He, Jun Zhang, Lin Xia, Kailing Tu, Jue Yuan, Ziheng Guo, Hongying Liu, Dan Xie, Ang Li
Software Mentions: 4
Published: over 4 years ago

10.1002/1878-0261.12811

High‐grade serous peritoneal cancer follows a high stromal response signature and shows worse outcome than ovarian cancer
Cited by: 1
Author(s): Francis Jacob, Rosa Lina Marchetti, André B. Kind, Kenneth J. Russell, Andreas Schoetzau, Viola Heinzelmann‐Schwarz
Software Mentions: 4
Published: about 4 years ago

10.1186/s12885-021-08201-z

Predictive nomogram for postoperative pancreatic fistula following pancreaticoduodenectomy: a retrospective study
Cited by: 8
Author(s): Jian Shen, Feng Guo, Yan Sun, Jingyuan Zhao, Jin Hu, Zunxiang Ke, Yushun Zhang, Xin Jin, Heshui Wu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-021-08796-3

Pan-cancer evaluation of gene expression and somatic alteration data for cancer prognosis prediction
Cited by: 3
Author(s): Xingyu Zheng, Christopher I. Amos, H. Robert Frost
Software Mentions: 4
Published: about 3 years ago

10.1515/med-2020-0142

An immune-relevant signature of nine genes as a prognostic biomarker in patients with gastric carcinoma
Cited by: 1
Author(s): Bing Wang, Yang Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12885-021-08207-7

Five long non-coding RNAs establish a prognostic nomogram and construct a competing endogenous RNA network in the progression of non-small cell lung cancer
Cited by: 8
Author(s): Yongjun Yu, Kewei Ren
Software Mentions: 4
Published: over 3 years ago

10.7150/jca.48664

MMP9 and IGFBP1 Regulate Tumor Immune and Drive Tumor Progression in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Tianbo Xu, Su Gao, Jingchong Liu, Yu Huang, Ke Chen, Xiaoping Zhang
Software Mentions: 4
Published: almost 4 years ago

10.7150/jca.57260

Construction of a ceRNA Network and a Prognostic lncRNA Signature associated with Vascular Invasion in Hepatocellular Carcinoma based on Weighted Gene Co-Expression Network Analysis
Cited by: 10
Author(s): Haisu Tao, Li Jiang, Junjie Liu, Tong Yuan, Erlei Zhang, Huifang Liang, Zhiyong Huang
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12885-020-07532-7

Establishment of an immune-related gene pair model to predict colon adenocarcinoma prognosis
Cited by: 8
Author(s): Jihang Luo, Puyu Liu, Leibo Wang, Yi Huang, Yuanyan Wang, Wenjing Geng, Duo Chen, Yifeng Bai, Zichen Yang
Software Mentions: 4
Published: about 4 years ago

10.7150/jca.54475

Development and Validation of a Nomogram based on cell growth-related Biomarkers for Oral Squamous Cell Carcinoma
Cited by: 1
Author(s): Yanjie Shuai, Yuansheng Duan, Mengqian Zhou, Kai Yue, Dandan Liu, Yan Fang, Yuxuan Wang, Yi‐Long Wu, Ze Zhang, Xudong Wang
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12885-015-1530-4

Expression of pre-selected TMEMs with predicted ER localization as potential classifiers of ccRCC tumors
Cited by: 77
Author(s): Tomasz Wrzesiński, Małgorzata Szeląg, Wojciech A Cieślikowski, Agnieszka Ida, Rachel Giles, Elżbieta Zodro, Joanna Szumska, Joanna Poźniak, Zbigniew Kwias, Hans A.R. Bluyssen, Joanna Wesoły
Software Mentions: 4
Published: over 9 years ago

10.1111/jcmm.13941

Deciphering molecular properties of hypermutated gastrointestinal cancer
Cited by: 8
Author(s): Wangxiong Hu, Yanmei Yang, Weiting Ge, Shu Zheng
Software Mentions: 4
Published: about 6 years ago

10.1111/jcmm.14779

Four transcription profile–based models identify novel prognostic signatures in oesophageal cancer
Cited by: 9
Author(s): Tongyan Liu, Panqi Fang, Chencheng Han, Zhongliang Ma, Weizhang Xu, Wenjia Xia, Jingwen Hu, Yongming Xu, Lin Xu, Rong Yin, Siwei Wang, Qin Zhang
Software Mentions: 4
Published: about 5 years ago

10.1111/jcmm.14748

Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
Cited by: 6
Author(s): Yuanlei Chen, Shangjun Jiang, Zeyi Lu, Dingwei Xue, Liqun Xia, Jinmei Lu, Huan Wang, Liwei Xu, Liyang Li, Gonghui Li
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12885-021-08478-0

Ferroptosis-related gene signature predicts the prognosis in Oral squamous cell carcinoma patients
Cited by: 18
Author(s): Hongyu Li, Xiliu Zhang, Yi Chen, Yi He, Xun Chen, Wei Zhao, Dongsheng Yu
Software Mentions: 4
Published: over 3 years ago

10.1515/med-2021-0307

Development and validation of a nomogram for predicting severity in patients with hemorrhagic fever with renal syndrome: A retrospective study
Cited by: 2
Author(s): Zheng Yang, Qinming Hu, Zhipeng Feng, Yi Sun
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12915-020-00783-7

Tropomyosin 1 genetically constrains in vitro hematopoiesis
Cited by: 8
Author(s): Christopher S. Thom, Chintan Jobaliya, Kimberly Lorenz, Jean Ann Maguire, Alyssa Gagne, Paul Gadue, Deborah L. French, Benjamin F. Voight
Software Mentions: 4
Published: over 4 years ago

10.1111/jcmm.16696

Establishment and experimental validation of an immune miRNA signature for assessing prognosis and immune landscape of patients with colorectal cancer
Cited by: 28
Author(s): Zaoqu Liu, Taoyuan Lu, Yanli Wang, Dechao Jiao, Zhaonan Li, Libo Wang, Long Liu, Chunguang Guo, Yanan Zhao, Xinwei Han
Software Mentions: 4
Published: over 3 years ago

10.3389/fcell.2021.709241

Characterization of Immune-Related Long Non-coding RNAs to Construct a Novel Signature and Predict the Prognosis and Immune Landscape of Soft Tissue Sarcoma
Cited by: 1
Author(s): Zhengjun Lin, Ke Pang, Hongli Liu, Xianghong Zhang, Jia Wan, Tao Zheng, Tang Liu, Weijun Peng
Software Mentions: 4
Published: about 3 years ago

10.3389/fcell.2021.646982

Identification of an Immune-Related Risk Signature Correlates With Immunophenotype and Predicts Anti-PD-L1 Efficacy of Urothelial Cancer
Cited by: 7
Author(s): Pengju Li, Shihui Hao, Yongkang Ye, Jinhuan Wei, Yuanyan Tang, Liang Tan, Zhuangyao Liao, Mingxiao Zhang, Jiaying Li, Chengpeng Gui, Jiefei Xiao, Yong Huang, Xu Chen, Jianping Cao, Junhang Luo, Wei Chen
Software Mentions: 4
Published: over 3 years ago

10.1155/2018/9157194

Childcare Correlates of Physical Activity, Sedentary Behavior, and Adiposity in Preschool Children: A Cross-Sectional Analysis of the SPLASHY Study
Cited by: 10
Author(s): Amar Arhab, Nadine Messerli‐Bürgy, Tanja H. Kakebeeke, Stefano Lanzi, Kerstin Stülb, Annina Zysset, Claudia S. Leeger‐Aschmann, Einat A. Schmutz, Andrea Meyer, Simone Munsch, Susi Kriemler, Oskar G. Jenni, Jardena J. Puder
Software Mentions: 4
Published: about 6 years ago

10.1186/s13148-020-00966-7

DNA methylation signatures to predict the cervicovaginal microbiome status
Cited by: 3
Author(s): Nuno R. Nené, James E. Barrett, Allison Jones, Iona Evans, Daniel Reisel, John F. Timms, Tobias Paprotka, Andreas Leimbach, D. Franchi, Nicoletta Colombo, Line Bjørge, Michal Zikán, David Cibula, Martin Widschwendter
Software Mentions: 4
Published: about 4 years ago

10.7717/peerj.11074

Identification of a novel autophagy signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jian Duan, Youming Lei, Guoli Lv, Yinqiang Liu, Zhao Wei, Qingmei Yang, Xin Su, Zhijian Song, Leilei Lu, Yunfei Shi
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers11091377

MALDI-MSI as a Complementary Diagnostic Tool in Cytopathology: A Pilot Study for the Characterization of Thyroid Nodules
Cited by: 22
Author(s): Giulia Capitoli, Isabella Piga, Stefania Galimberti, Davide Leni, Angela Ida Pincelli, Mattia Garancini, Francesca Clerici, Allia Mahajneh, Virginia Brambilla, Andrew Smith, Fulvio Magni, Fabio Pagni
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.202636

Identification and validation of a two-gene metabolic signature for survival prediction in patients with kidney renal clear cell carcinoma
Cited by: 6
Author(s): Xudong Guo, Zhuolun Sun, Shaobo Jiang, Xunbo Jin, Hanbo Wang
Software Mentions: 3
Published: over 3 years ago

10.1186/s12935-020-1104-7

Immune-related gene signature for predicting the prognosis of head and neck squamous cell carcinoma
Cited by: 47
Author(s): Yangyang She, Xiangbo Kong, Yaping Ge, Ping Yin, Yong Li, Jieyu Chen, Feng Gao, Si-Lian Fang
Software Mentions: 3
Published: almost 5 years ago

10.18632/aging.202327

Identification of a novel immune microenvironment signature predicting survival and therapeutic options for bladder cancer
Cited by: 9
Author(s): Yi‐Lin Yan, Zhengnan Huang, Jinming Cai, Pengyu Tang, Fang Zhang, Mingyue Tan, Bing Shen
Software Mentions: 3
Published: almost 4 years ago

10.1093/jxb/eraa302

Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species
Cited by: 24
Author(s): Léa Roch, Sylvain Prigent, Holger Klose, Coffi-Belmys Cakpo, Bertrand Beauvoit, Catherine Deborde, Laëtitia Fouillen, Pierre Van Delft, Daniel Jacob, Björn Usadel, Zhanwu Dai, Michel Génard, Gilles Vercambre, Sophie Colombié, Annick Moing, Yves Gibon
Software Mentions: 3
Published: over 4 years ago

10.7150/ijms.46780

The prognostic value and potential mechanism of Matrix Metalloproteinases among Prostate Cancer
Cited by: 13
Author(s): Xinyu Geng, Chunyang Chen, Yuhua Huang, Jianquan Hou
Software Mentions: 3
Published: almost 5 years ago

10.7150/jca.57231

A clinical prediction model identifies a subgroup with inferior survival within intermediate risk acute myeloid leukemia
Cited by: 8
Author(s): Xiaoxia Hu, Bianhong Wang, Qi Chen, Aijie Huang, Weijia Fu, Lixia Liu, Ying Zhang, Gusheng Tang, Hui Cheng, Xiong Ni, Lei Gao, Jie Chen, Li Chen, Weiping Zhang, Jianmin Yang, Shanbo Cao, Li Yu, Jianmin Wang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13046-021-02016-3

Identification and monitoring of mutations in circulating cell-free tumor DNA in hepatocellular carcinoma treated with lenvatinib
Cited by: 22
Author(s): Yoshiko Fujii, Atsushi Ono, C. Nelson Hayes, Hiroshi Aikata, Masami Yamauchi, Shinsuke Uchikawa, Kenichiro Kodama, Yuji Teraoka, Hatsue Fujino, Takashi Nakahara, Eisuke Murakami, Daiki Miki, Wataru Okamoto, Tomokazu Kawaoka, Masataka Tsuge, Michio Imamura, Kazuaki Chayama
Software Mentions: 3
Published: over 3 years ago

10.1155/2021/5596924

Gut Microbiota-Related Effects of Tanhuo Decoction in Acute Ischemic Stroke
Cited by: 22
Author(s): Qian Guo, Xiaoqing Jiang, Can Ni, Linjing Li, Li Chen, Yaqi Wang, Mo Li, Chunhui Wang, Li Gao, Huaiqiu Zhu, Juexian Song
Software Mentions: 3
Published: over 3 years ago

10.1186/s12866-020-01829-0

Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study
Cited by: 26
Author(s): Shirin Moossavi, Kelsey Fehr, Hooman Derakhshani, Hind Sbihi, Bianca Robertson, Lars Bode, Jeffrey R. Brook, Stuart E. Turvey, Theo J. Moraes, Allan B. Becker, Piushkumar J. Mandhane, Malcolm R. Sears, Ehsan Khafipour, Padmaja Subbarao, Meghan B. Azad
Software Mentions: 3
Published: over 4 years ago

10.1093/gigascience/giaa076

Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network
Cited by: 30
Author(s): Xiang Zhou, Hua Chai, Huiying Zhao, Ching Hsing Luo, Yuedong Yang
Software Mentions: 3
Published: over 4 years ago

10.1186/s40246-018-0179-x

Bayesian variable selection for parametric survival model with applications to cancer omics data
Cited by: 10
Author(s): Weiwei Duan, Ruyang Zhang, Yang Zhao, Sipeng Shen, Yongyue Wei, Feng Chen, David C. Christiani
Software Mentions: 3
Published: about 6 years ago

10.1038/srep31619

Multitask learning improves prediction of cancer drug sensitivity
Cited by: 77
Author(s): Han Yuan, Ivan Paskov, Hristo S. Paskov, Álvaro González, Christina Leslie
Software Mentions: 3
Published: over 8 years ago

10.1186/s12936-021-03604-6

Evaluation of the durability and use of long‐lasting insecticidal nets in Nicaragua
Cited by: 8
Author(s): Emperatriz Lugo Villalta, Aida Mercedes Soto Bravo, Lucrecia Vizcaino, Nicole Dzuris, Marco A. Delgado, Michael Green, Stephen C. Smith, Audrey Lenhart, Alexandre Macedo de Oliveira
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0054885

A Biophysical Model for Identifying Splicing Regulatory Elements and Their Interactions
Cited by: 6
Author(s): Ji Wen, Zhibin Chen, Xiaodong Cai
Software Mentions: 3
Published: almost 12 years ago

10.3389/fonc.2021.600546

Radiomic Analysis of Contrast-Enhanced Mammography With Different Image Types: Classification of Breast Lesions
Cited by: 3
Author(s): Simin Wang, Ning Mao, Shaofeng Duan, Qin Li, Ruimin Li, Tingting Jiang, Zhongyi Wang, Haizhu Xie, Yajia Gu
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-12-211

Fast empirical Bayesian LASSO for multiple quantitative trait locus mapping
Cited by: 78
Author(s): Xiaodong Cai, Anhui Huang, Shizhong Xu
Software Mentions: 3
Published: over 13 years ago

10.3390/cancers13143616

Risk Score Generated from CT-Based Radiomics Signatures for Overall Survival Prediction in Non-Small Cell Lung Cancer
Cited by: 27
Author(s): Viet-Huan Le, Quang-Hien Kha, Truong Nguyen Khanh Hung, Nguyen Quoc Khanh Le
Software Mentions: 3
Published: over 3 years ago

10.1186/s12874-016-0128-0

Comparison of predictive modeling approaches for 30-day all-cause non-elective readmission risk
Cited by: 45
Author(s): Liping Tong, Cole Erdmann, Marina Daldalian, Jing Li, Tina Esposito
Software Mentions: 3
Published: over 8 years ago

10.1128/mSphere.00104-20

HIV Is Associated with Modified Humoral Immune Responses in the Setting of HIV/TB Coinfection
Cited by: 13
Author(s): Esther van Woudenbergh, Edward B. Irvine, Leela Davies, Marwou de Kock, Willem A. Hanekom, Cheryl L. Day, Sarah M. Fortune, Galit Alter
Software Mentions: 3
Published: over 4 years ago

10.1038/srep17282

Protein profiling reveals consequences of lifestyle choices on predicted biological aging
Cited by: 35
Author(s): Stefan Enroth, Sofia Bosdotter Enroth, Åsa Johansson, Ulf Gyllensten
Software Mentions: 3
Published: almost 9 years ago

10.3390/cancers12061629

Identification of a Blood-Based Protein Biomarker Panel for Lung Cancer Detection
Cited by: 19
Author(s): Victoria El-Khoury, Anna Schritz, Sang Yoon Kim, Antoine Lesur, Katriina Sertamo, François Bernardin, Konstantinos Pétritis, Patrick Pirrotte, Cheryl Selinsky, Jeffrey R. Whiteaker, Haizhen Zhang, Jacob J. Kennedy, Chenwei Lin, Lik Wee Lee, Ping Yan, Nhan L. Tran, Landon J. Inge, Khaled Chalabi, G. Anton Decker, Rolf Bjerkvig, Amanda G. Paulovich, Guy Berchem, Yeoun Jin Kim
Software Mentions: 3
Published: over 4 years ago

10.18632/aging.202838

The effectiveness of continuous renal replacement therapy in critical COVID-19 patients with cytokine release syndrome: a retrospective, multicenter, descriptive study from Wuhan, China
Cited by: 5
Author(s): Huiling Xiang, Bin Song, Yuanyuan Zhang, Jianduan Zhang, Jing Xiong
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-017-03199-6

Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences
Cited by: 11
Author(s): Munazah Andrabi, Andrew P. Hutchins, Diego Miranda‐Saavedra, Hidetoshi Kono, Ruth Nussinov, Kenji Mizuguchi, Shandar Ahmad
Software Mentions: 3
Published: over 7 years ago

10.3389/fchem.2020.00738

Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation
Cited by: 3
Author(s): Giulia Biosa, Diana Giurghita, Eugenio Alladio, Marco Vincenti, Tereza Neocleous
Software Mentions: 3
Published: about 4 years ago

10.1038/s41398-021-01606-1

Who benefits most from expectancy effects? A combined neuroimaging and antidepressant trial in depressed older adults
Cited by: 3
Author(s): Sigal Zilcha‐Mano, Meredith L. Wallace, Patrick J. Brown, Joel R. Sneed, Steven P. Roose, Bret R. Rutherford
Software Mentions: 3
Published: about 3 years ago

10.3390/vaccines8020225

Uncovering Distinct Primary Vaccination-Dependent Profiles in Human Bordetella pertussis Specific CD4+ T-Cell Responses Using a Novel Whole Blood Assay
Cited by: 10
Author(s): Eleonora E. Lambert, Véronique Corbière, Jacqueline A. M. van Gaans-van den Brink, M. Duijst, Prashanna Balaji Venkatasubramanian, Elles Simonetti, Martijn Huynen, Dimitri Diavatopoulos, Pauline Versteegen, Guy A. M. Berbers, Françoise Mascart, Cécile A. C. M. van
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0229210

Scores for sepsis detection and risk stratification – construction of a novel score using a statistical approach and validation of RETTS
Cited by: 14
Author(s): Lisa Mellhammar, Adam Linder, Jonas Tverring, Bértil Christensson, John H. Boyd, Per Åkesson, Fredrik Kahn
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2020.585259

Construction and Validation of a Novel Glycometabolism-Related Gene Signature Predicting Survival in Patients With Ovarian Cancer
Cited by: 8
Author(s): Lixiao Liu, Luya Cai, Chuan Liu, Shanshan Yu, Bingxin Li, Linmin Pan, Jinduo Zhao, Ye Zhao, Wenfeng Li, Xiaojian Yan
Software Mentions: 3
Published: about 4 years ago

10.7150/thno.47882

Plasma protein-based signature predicts distant metastasis and induction chemotherapy benefit in Nasopharyngeal Carcinoma
Cited by: 13
Author(s): Ye‐Lin Liang, Junyan Li, Qian Li, Ling‐Long Tang, Lei Chen, Yan‐Ping Mao, Qing‐Mei He, Xiaojing Yang, Yuan Liu, Xiaohong Hong, Yin Zhao, Shiwei He, Ying Guo, Yaqin Wang, Panpan Zhang, Na Liu, Ying‐Qin Li, Jingfei Ma
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2019.00996

Identification of a Nine-Gene Signature and Establishment of a Prognostic Nomogram Predicting Overall Survival of Pancreatic Cancer
Cited by: 131
Author(s): Mei Wu, Xiaobin Li, Taiping Zhang, Ziwen Liu, Yupei Zhao
Software Mentions: 3
Published: about 5 years ago

10.3390/nu11030576

Fatty Acids Composition of Blood Cell Membranes and Peripheral Inflammation in the PREDIMED Study: A Cross-Sectional Analysis
Cited by: 13
Author(s): Jananee Muralidharan, Christopher Papandreou, Aleix Sala‐Vila, Núria Rosique-Esteban, Montserrat Fitó, Ramón Estruch, Miguel Ángel Martínez‐González, Dolores Corella, Emilio Ros, Cristina Razquín, Olga Castañer, Jordi Salas‐Salvadó, Mònica Bulló
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.102931

Using ESTIMATE algorithm to establish an 8-mRNA signature prognosis prediction system and identify immunocyte infiltration-related genes in Pancreatic adenocarcinoma
Cited by: 51
Author(s): Zhaoqing Meng, Dianyun Ren, Kun Zhang, Jingyuan Zhao, Xin Jin, Heshui Wu
Software Mentions: 3
Published: over 4 years ago

10.1186/s40644-021-00407-5

Application of contrast-enhanced CT radiomics in prediction of early recurrence of locally advanced oesophageal squamous cell carcinoma after trimodal therapy
Cited by: 13
Author(s): Shengjun Tang, Jing Ou, Jun Liu, Yu Wu, Changqiang Wu, Tianwu Chen, Xiaoming Zhang, Rui Li, Mengjie Tang, Yang Long, Bang-guo Tan, Fulin Lu, Jiani Hu
Software Mentions: 3
Published: over 3 years ago

10.2196/22835

Depression, Anxiety, and Lifestyle Among Essential Workers: A Web Survey From Brazil and Spain During the COVID-19 Pandemic
Cited by: 50
Author(s): Raquel Brandini De Boni, Vicent Balanzá‐Martínez, Jurema Corrêa da Mota, Taiane de Azevedo Cardoso, Pedro Ballester, Beatriz Atienza-Carbonell, Francisco I. Bastos, Flávio Kapczinski
Software Mentions: 3
Published: about 4 years ago

10.1186/s12885-021-08351-0

A stemness-based eleven-gene signature correlates with the clinical outcome of hepatocellular carcinoma
Cited by: 10
Author(s): Lei Hong, Yu Zhou, Xiangbang Xie, Wanrui Wu, Changsheng Shi, Heping Lin, Zhenjing Shi
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2019.01160

A Long Non-coding RNA Signature to Improve Prognostic Prediction of Pancreatic Ductal Adenocarcinoma
Cited by: 16
Author(s): Chixing Zhou, Shun Wang, Qiang Zhou, Jin Zhao, Xianghou Xia, Wanyong Chen, Yan Zheng, Min Xue, Feng Yang, Deliang Fu, Yuehui Yin, Manar Atyah, Lun–Xiu Qin, Yue Zhao, Christiane Bruns, Hongyan Jia, Ning Ren, Qiongzhu Dong
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.103363

Biomarkers of aging and lung function in the normative aging study
Cited by: 14
Author(s): Cuicui Wang, Allan C. Just, Jonathan Heiss, Brent A. Coull, Lifang Hou, Yinan Zheng, David Sparrow, Pantel Vokonas, Andrea A. Baccarelli, Joel Schwartz
Software Mentions: 3
Published: over 4 years ago

10.1186/s13148-018-0575-z

A urine-based DNA methylation assay, ProCUrE, to identify clinically significant prostate cancer
Cited by: 25
Author(s): Fang Zhao, Ekaterina Olkhov‐Mitsel, Shivani Kamdar, Renu Jeyapala, Julia Garcia, Rachel Hurst, Marcelino Yazbek Hanna, Robert Mills, Alexandra V. Tuzova, Eve O’Reilly, Sarah Kelly, Christopher S. Cooper, Daniel Brewer, Antoinette S. Perry, Jeremy Clark, Neil Fleshner, Bharati Bapat
Software Mentions: 3
Published: about 6 years ago

10.3390/vaccines8010004

Systems Vaccinology for a Live Attenuated Tularemia Vaccine Reveals Unique Transcriptional Signatures That Predict Humoral and Cellular Immune Responses
Cited by: 21
Author(s): Muktha S. Natrajan, Nadine Rouphael, Lilin Lai, Dmitri Kazmin, Travis L. Jensen, David S. Weiss, Chris Ibegbu, Marcelo B. Sztein, William F. Hooper, Heather Hill, Evan J. Anderson, Robert A. Johnson, Patrick Sanz, Bali Pulendran, Johannes Goll, Mark J. Mulligan
Software Mentions: 3
Published: almost 5 years ago

10.3389/fdata.2020.00018

Theory In, Theory Out: The Uses of Social Theory in Machine Learning for Social Science
Cited by: 27
Author(s): Jason Radford, Kenneth Joseph
Software Mentions: 3
Published: over 4 years ago

10.1001/jamanetworkopen.2018.1018

Development and Validation of an Electronic Health Record–Based Machine Learning Model to Estimate Delirium Risk in Newly Hospitalized Patients Without Known Cognitive Impairment
Cited by: 94
Author(s): Andrew Wong, A. E. Young, April S. Liang, Ralph Gonzales, Vanja C. Douglas, Dexter Hadley
Software Mentions: 3
Published: over 6 years ago

10.1186/s13148-020-00988-1

High-resolution analyses of human sperm dynamic methylome reveal thousands of novel age-related epigenetic alterations
Cited by: 23
Author(s): Mingju Cao, Xiaojian Shao, Peter Chan, Warren A. Cheung, Tony Kwan, Tomi Pastinen, Bernard Robaire
Software Mentions: 3
Published: almost 4 years ago

10.18632/aging.101590

A multi-tissue full lifespan epigenetic clock for mice
Cited by: 144
Author(s): Michael J. Thompson, Karolina Chwiałkowska, Liudmilla Rubbi, Aldons J. Lusis, Richard C. Davis, Anuj Srivastava, Ron Korstanje, Gary A. Churchill, Steve Horvath, Matteo Pellegrini
Software Mentions: 3
Published: about 6 years ago

10.1007/s11222-019-09914-9

High-dimensional regression in practice: an empirical study of finite-sample prediction, variable selection and ranking
Cited by: 21
Author(s): Fan Wang, Sach Mukherjee, Sylvia Richardson, Steven M. Hill
Software Mentions: 3
Published: almost 5 years ago

10.1186/1755-8794-4-26

Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients
Cited by: 107
Author(s): Michael Elashoff, James A. Wingrove, Philip Beineke, Susan E. Daniels, Whittemore G. Tingley, Steven Rosenberg, Szilárd Vörös, William E. Kraus, Geoffrey S. Ginsburg, Robert S. Schwartz, Stephen G. Ellis, Naheem Tahirkheli, Ron Waksman, John McPherson, Alexandra J. Lansky, Eric J. Topol
Software Mentions: 3
Published: over 13 years ago

10.1007/s12561-016-9185-5

Classification of Large-Scale Remote Sensing Images for Automatic Identification of Health Hazards
Cited by: 5
Author(s): Mark A. Wolters, C. B. Dean
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12885-020-06843-z

Hospitalization and definitive radiotherapy in lung cancer: incidence, risk factors and survival impact
Cited by: 6
Author(s): Sarah Z. Hazell, Nicholas Mai, Wei Fu, Chen Hu, Cole Friedes, Alex Negron, Khinh Ranh Voong, Josephine Feliciano, Peijin Han, Samantha Myers, Todd McNutt, Russell K. Hales
Software Mentions: 3
Published: over 4 years ago

Projects: pypi: glmnet

Papers Mentioning glmnet 1,607