Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: gene

https://packages.ecosyste.ms/registries/pypi.org/packages/gene

gene
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Latest release: about 5 years ago
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Papers Mentioning gene 185

10.3389/fgene.2021.682856
Overexpression of SHMT2 Predicts a Poor Prognosis and Promotes Tumor Cell Growth in Bladder Cancer
Cited by: 14
Author(s): Peng Zhang, Qian Yang
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2021.738068
A Comprehensive Prognostic and Immunological Analysis of a Six-Gene Signature Associated With Glycolysis and Immune Response in Uveal Melanoma
Cited by: 8
Author(s): Jun Li, Jianjun Lu, Wenli Li
Software Mentions: 2
Published: almost 3 years ago
10.3389/fonc.2021.636591
Molecular Classification Based on Prognostic and Cell Cycle-Associated Genes in Patients With Colon Cancer
Cited by: 7
Author(s): Zhiyuan Zhang, Meiling Ji, Jie Li, Qi Wu, Yuesheng Huang, Guodong He, Jiacheng Xu
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2019.00299
Overexpression of Cotton a DTX/MATE Gene Enhances Drought, Salt, and Cold Stress Tolerance in Transgenic Arabidopsis
Cited by: 63
Author(s): Lei Pu, Richard Odongo Magwanga, Joy Nyangasi Kirungu, Yangguang Hu, Qi Dong, Xiaoyan Cai, Zhongli Zhou, Xingxing Wang, Zhenmei Zhang, Yuqing Hou, Kunbo Wang, Fang Liu
Software Mentions: 2
Published: over 5 years ago
10.1080/19490976.2019.1651596
Mucosal IgG in inflammatory bowel disease – a question of (sub)class?
Cited by: 10
Author(s): Tomas Castro‐Dopico, Menna R. Clatworthy
Software Mentions: 2
Published: about 5 years ago
10.7150/jca.53697
Identification of tumor mutation burden-related hub genes and the underlying mechanism in melanoma
Cited by: 8
Author(s): Chuan Zhang, Dan Dang, Chenlu Liu, Yuqian Wang, Xianling Cong
Software Mentions: 2
Published: over 3 years ago
10.1038/srep41711
Therapeutic properties of Scutellaria baicalensis in db/db mice evaluated using Connectivity Map and network pharmacology
Cited by: 18
Author(s): Bu-Yeo Kim, Kwang Hoon Song, Chi-Yeon Lim, Su-In Cho
Software Mentions: 2
Published: over 7 years ago
10.1155/2014/546347
Multiple Components of the VHL Tumor Suppressor Complex Are Frequently Affected by DNA Copy Number Loss in Pheochromocytoma
Cited by: 7
Author(s): David A. Rowbotham, Katey S.S. Enfield, Victor D. Martínez, Kelsie L. Thu, Emily A. Vucic, Greg L. Stewart, Kevin L. Bennewith, Wan L. Lam
Software Mentions: 2
Published: over 10 years ago
10.1038/s41389-020-0239-7
MeCP2 facilitates breast cancer growth via promoting ubiquitination-mediated P53 degradation by inhibiting RPL5/RPL11 transcription
Cited by: 25
Author(s): Dongdong Tong, Jing Zhang, Xiaofei Wang, Qian Li, Li Ying Liu, Juan Yang, Bo Guo, Lei Ni, Lingyu Zhao, Chen Huang
Software Mentions: 2
Published: over 4 years ago
10.3892/or.2015.4038
A novel method to identify pathways associated with renal cell carcinoma based on a gene co-expression network
Cited by: 4
Author(s): Xiyun Ruan, Hongyun Liu, Bo Liu, Jie Chen, Shi‐Bao Zhang, Zeqiang Sun, Shuangqing Liu, Fahai Sun, Qingyong Liu
Software Mentions: 2
Published: over 9 years ago
10.7554/eLife.62592
A feedback loop between the androgen receptor and 6-phosphogluoconate dehydrogenase (6PGD) drives prostate cancer growth
Cited by: 13
Author(s): Joanna L. Gillis, Josephine A Hinneh, Natalie K. Ryan, Swati Irani, Max Moldovan, Lake‐Ee Quek, Raj K. Shrestha, Adrienne R. Hanson, Jianling Xie, Andrew J. Hoy, Jeff Holst, Margaret M. Centenera, Ian G. Mills, David J. Lynn, Luke A. Selth, Lisa M. Butler
Software Mentions: 2
Published: about 3 years ago
10.7554/eLife.59686
Dichotomous role of the human mitochondrial Na+/Ca2+/Li+ exchanger NCLX in colorectal cancer growth and metastasis
Cited by: 35
Author(s): Trayambak Pathak, Maxime Guéguinou, Vonn Walter, Céline Delierneux, Martin Johnson, Xuexin Zhang, Ping Xin, Ryan E. Yoast, Scott M. Emrich, Gregory S. Yochum, Israel Sekler, Walter A. Koltun, Donald L. Gill, Nadine Hempel
Software Mentions: 2
Published: about 4 years ago
10.3390/ijms18040805
Radiogenomic Analysis of Oncological Data: A Technical Survey
Cited by: 97
Author(s): Mariarosaria Incoronato, Marco Aiello, Teresa Infante, Carlo Cavaliere, Anna Grimaldi, Peppino Mirabelli, Serena Monti, Marco Salvatore
Software Mentions: 2
Published: over 7 years ago
10.18632/oncotarget.24341
Methotrexate sensitizes drug-resistant metastatic melanoma cells to <i>BRAF</i> V600E inhibitors dabrafenib and encorafenib
Cited by: 8
Author(s): Kayleigh C. Ross, Kevin F Chin, Dae-Hwan Kim, Christopher D. Marion, Timothy Yen, Vikram Bhattacharjee
Software Mentions: 2
Published: over 6 years ago
10.3390/diagnostics10080606
The Oncogenic Roles of PTTG1 and PTTG2 Genes and Pseudogene PTTG3P in Head and Neck Squamous Cell Carcinomas
Cited by: 9
Author(s): Inga Grzechowiak, Justyna Graś, Dominika Szymańska, Martyna Biernacka, Kacper Guglas, Paulina Poter, Andrzej Maćkiewicz, Tomasz Kolenda
Software Mentions: 1
Published: about 4 years ago
10.3389/fonc.2019.01567
THBS1 Is a Novel Serum Prognostic Factors of Acute Myeloid Leukemia
Cited by: 16
Author(s): Lifei Zhu, Qiong Li, Xiaoguo Wang, Jun Liao, Wei Zhang, Lei Gao, Yao Liu, Cheng Zhang, Xi Zhang, Jun Rao, Peiyan Kong
Software Mentions: 1
Published: over 4 years ago
10.1093/database/baaa086
OUP accepted manuscript
Cited by: 2
Author(s): Yu‐Tian Tao, Xiao‐Bao Ding, Jie Jin, Haibo Zhang, Wen‐Ping Guo, Li Ruan, Qiao‐lei Yang, Pengcheng Chen, Heng Yao, Xin Chen
Software Mentions: 1
Published: over 4 years ago
10.3389/fonc.2018.00430
Multi-Omics Profiling of the Tumor Microenvironment: Paving the Way to Precision Immuno-Oncology
Cited by: 50
Author(s): Francesca Finotello, Federica Eduati
Software Mentions: 1
Published: almost 6 years ago
10.3389/fonc.2020.572672
Reduction of Bladder Cancer Chemosensitivity Induced by the Effect of HOXA-AS3 as a ceRNA for miR-455-5p That Upregulates Notch1
Cited by: 11
Author(s): Dajin Chen, Shangzhi Xie, Ying Wu, Yu Cui, Ying Cai, Lan Lan, Hao Yang, Jianghua Chen, Wei Chen
Software Mentions: 1
Published: over 3 years ago
10.1093/database/bax054
CTD2 Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network
Cited by: 19
Author(s): Bülent Arman Aksoy, Vlado Dančík, Kenneth Smith, Jessica N. Mazerik, Ji Zhou, Benjamin Groß, Olga Nikolova, Nadia Jaber, Andrea Califano, Stuart L. Schreiber, Daniela S. Gerhard, Leandro Hermida, Subhashini Jagu, Chris Sander, Aris Floratos, Paul A. Clemons
Software Mentions: 1
Published: over 7 years ago
10.1038/s41419-020-03205-2
Long noncoding RNA ASB16-AS1 inhibits adrenocortical carcinoma cell growth by promoting ubiquitination of RNA-binding protein HuR
Cited by: 15
Author(s): Bo Long, Xufei Yang, Xixia Xu, Xiaoxin Li, Xinjie Xu, Xuebin Zhang, Shuyang Zhang
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41419-020-03212-3
HDAC8-dependent deacetylation of PKM2 directs nuclear localization and glycolysis to promote proliferation in hepatocellular carcinoma
Cited by: 22
Author(s): Ruixue Zhang, Mingxue Shen, Chin‐Chen Wu, Yumei Chen, Jing Lü, Jiajin Li, Li Zhao, Huannan Meng, Xiang Zhou, Gang Huang, Xiaoping Zhao, Jianjun Li
Software Mentions: 1
Published: almost 4 years ago
10.3389/fonc.2021.633430
HOXA5 Is Recognized as a Prognostic-Related Biomarker and Promotes Glioma Progression Through Affecting Cell Cycle
Cited by: 7
Author(s): Fengqin Ding, Ping Chen, Pengfei Bie, Wenhua Piao, Quan Cheng
Software Mentions: 1
Published: about 3 years ago
10.3389/fonc.2018.00496
Clinical Significance of Elevated S100A8 Expression in Breast Cancer Patients
Cited by: 26
Author(s): Dujuan Wang, Guo-Hong Liu, Balu Wu, Li Chen, Lihua Zeng, Yunbao Pan
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0022116
Gene Expression Pattern in Transmitochondrial Cytoplasmic Hybrid Cells Harboring Type 2 Diabetes-Associated Mitochondrial DNA Haplogroups
Cited by: 48
Author(s): Seungwoo Hwang, Soo Heon Kwak, Jong Bhak, Hae Sun Kang, You Ri Lee, Bo Kyung Koo, Kyong Soo Park, Hong Kyu Lee, Young Min Cho
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0096178
A Pilot Genome-Scale Profiling of DNA Methylation in Sporadic Pituitary Macroadenomas: Association with Tumor Invasion and Histopathological Subtype
Cited by: 33
Author(s): Chao Ling, Matthew Pease, Lingling Shi, Vasu Punj, Mark S. Shiroishi, Deborah Commins, Daniel J. Weisenberger, Kai Wang, Gabriel Zada
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0012693
Self-Contained Gene-Set Analysis of Expression Data: An Evaluation of Existing and Novel Methods
Cited by: 62
Author(s): Brooke L. Fridley, Gregory D. Jenkins, Joanna M. Biernacka
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pgen.1000061
Primary Coenzyme Q Deficiency in Pdss2 Mutant Mice Causes Isolated Renal Disease
Cited by: 107
Author(s): Min Peng, Marni J. Falk, Volker H. Haase, Rhonda King, Erzsébet Polyák, Mary Selak, Marc Yudkoff, Wayne W. Hancock, Ray Meade, Ryoichi Saiki, Adam Lunceford, Catherine F. Clarke, David L. Gasser
Software Mentions: 1
Published: over 16 years ago
10.18632/aging.101668
Myoblasts rely on TAp63 to control basal mitochondria respiration
Cited by: 4
Author(s): Veronica Ciuffoli, Anna Maria Lena, Alessandra Gambacurta, Gerry Melino, Eleonora Candi
Software Mentions: 1
Published: almost 6 years ago
10.3389/fonc.2021.668707
Poor Prognosis and Therapeutic Responses in LILRB1-Expressing M2 Macrophages-Enriched Gastric Cancer Patients
Cited by: 5
Author(s): Yawei Zhang, Han Wang, Xiaoyu Xu, Huifang Liu, Tong Hao, Saifu Yin, Changhua Zhang, Yulong He
Software Mentions: 1
Published: about 3 years ago
10.3389/fphys.2020.00510
MiR-181d-5p Targets KLF6 to Improve Ischemia/Reperfusion-Induced AKI Through Effects on Renal Function, Apoptosis, and Inflammation
Cited by: 28
Author(s): Yue Zhang, Chenyu Li, Guan Chen, Bin Zhou, Lin Wang, Chengyu Yang, Zhen Li, Jie Dai, Liang Zhao, Wei Jiang, Yan Xu
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1005074
Systems Biology-Based Investigation of Cellular Antiviral Drug Targets Identified by Gene-Trap Insertional Mutagenesis
Cited by: 49
Author(s): Feixiong Cheng, James L. Murray, Junfei Zhao, Jinsong Sheng, Zhongming Zhao, Donald H. Rubin
Software Mentions: 1
Published: about 8 years ago
10.1186/s12967-021-03037-4
Age and gender differences in ACE2 and TMPRSS2 expressions in oral epithelial cells
Cited by: 18
Author(s): Jinghui Peng, Jiwei Sun, Jiajia Zhao, Xuliang Deng, Fengyuan Guo, Lili Chen
Software Mentions: 1
Published: about 3 years ago
10.3390/genes9010016
SNCA Is a Functionally Low-Expressed Gene in Lung Adenocarcinoma
Cited by: 38
Author(s): Yuanliang Yan, Zhijie Xu, Xiaofang Hu, Long Qian, Zhi Li, Yangying Zhou, Shuang Dai, Shuangshuang Zeng, Zhicheng Gong
Software Mentions: 1
Published: over 6 years ago
10.3390/genes9070361
GADD45B as a Prognostic and Predictive Biomarker in Stage II Colorectal Cancer
Cited by: 25
Author(s): Zhixun Zhao, Yibo Gao, Xu Guan, Zheng Liu, Zheng Jiang, Xiuyun Liu, Huixin Lin, Ming Yang, Chunxiang Li, Rulai Yang, Shuangmei Zou, Xishan Wang
Software Mentions: 1
Published: about 6 years ago
10.3390/genes10070492
Cloudy with a Chance of Insights: Context Dependent Gene Regulation and Implications for Evolutionary Studies
Cited by: 20
Author(s): Elisa Buchberger, Micael Reis, Ting-Hsuan Lu, Nico Posnien
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pbio.1001461
ELF5 Suppresses Estrogen Sensitivity and Underpins the Acquisition of Antiestrogen Resistance in Luminal Breast Cancer
Cited by: 73
Author(s): Maria Kalyuga, David Gallego‐Ortega, Heather Lee, Daniel Roden, Mark J. Cowley, C. Elizabeth Caldon, Andrew Stone, Stephanie L. Allerdice, Fátima Valdés-Mora, Rosalind Launchbury, Aaron L. Statham, Nicola J. Armstrong, M. Chehani Alles, Alex Young, Andrea Egger, Wendy W.Y. Au, Catherine Piggin, Cara J. Evans, Anita Ledger, Tilman Brummer, Samantha Oakes, Warren Kaplan, Julia Margaret Wendy Gee, Robert Ian Nicholson, Robert L. Sutherland, Alexander Swarbrick, Matthew J. Naylor, Susan J. Clark, Jason S. Carroll, Christopher J. Ormandy
Software Mentions: 1
Published: over 11 years ago
10.1111/pbi.12850
High-resolution mapping of the pericentromeric region on wheat chromosome arm 5AS harbouring the Fusarium head blight resistance QTL<i>Qfhs.ifa-5A</i>
Cited by: 35
Author(s): Maria Buerstmayr, Barbara Steiner, Christian Wagner, Petra Schwarz, Klaus Brugger, Delfina Barabaschi, Andrea Volante, Giampiero Valè, Luigi Cattivelli, Hermann Buerstmayr
Software Mentions: 1
Published: almost 7 years ago
10.1186/s13073-018-0590-x
Landscape of genomic alterations in high-grade serous ovarian cancer from exceptional long- and short-term survivors
Cited by: 70
Author(s): S.Y. Cindy Yang, Stéphanie Lheureux, Katherine Karakasis, Julia V. Burnier, Jeffery P. Bruce, Derek L. Clouthier, Arnavaz Danesh, Rene Quevedo, Mark Dowar, Youstina Hanna, Tiantian Li, Lin Lü, Wei Xu, Blaise A. Clarke, Pamela S. Ohashi, Patricia Shaw, Trevor J. Pugh, Amit M. Oza
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms20123087
Transcriptional Regulation of gga-miR-451 by AhR:Arnt in Mycoplasma gallisepticum (HS Strain) Infection
Cited by: 12
Author(s): Yabo Zhao, Yali Fu, Yingfei Sun, Meiling Zou, Xiuli Peng
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.7899
Identification of key genes and multiple molecular pathways of metastatic process in prostate cancer
Cited by: 13
Author(s): Lihuang Guo, Mingyue Lin, Zhenbo Cheng, Yi Chen, Yue Huang, Ke Xu
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13567-019-0649-8
Spleen and head kidney differential gene expression patterns in trout infected with Lactococcus garvieae correlate with spleen granulomas
Cited by: 22
Author(s): Rosario Castro, Julio Coll, M. Mar Blanco, Antonio Rodríguez‐Bertos, Luc Jouneau, J. F. Fernández‐Garayzábal, Alicia Gibello
Software Mentions: 1
Published: over 5 years ago
10.3390/molecules24040760
Therapeutic Effects of HIF-1α on Bone Formation around Implants in Diabetic Mice Using Cell-Penetrating DNA-Binding Protein
Cited by: 10
Author(s): Seung-Yong Oh, Jae Ho Shin, Il Koo Kim, Jung Ho Kim, Jae Seung Moon, Sang Kyou Lee, Jae Hoon Lee
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms22189947
Impact of Oncogenic Targets by Tumor-Suppressive miR-139-5p and miR-139-3p Regulation in Head and Neck Squamous Cell Carcinoma
Cited by: 7
Author(s): Ayaka Koma, Shunichi Asai, Chikashi Minemura, Sachi Oshima, Takashi Kinoshita, Naoko Kikkawa, Keiichi Koshizuka, Shogo Moriya, Atsushi Kasamatsu, Toyoyuki Hanazawa, Katsuhiro Uzawa, Naohiko Seki
Software Mentions: 1
Published: about 3 years ago
10.4172/2157-2518.1000198
Differential Effect of Active Smoking on Gene Expression in Male and Female Smokers
Cited by: 36
Author(s): Sunirmal Paul, Sally A. Amundson
Software Mentions: 1
Published: over 10 years ago
10.1111/jcmm.16582
A novel autophagy‐related lncRNA survival model for lung adenocarcinoma
Cited by: 37
Author(s): Liwei Wu, Wen Zhu, Yanzheng Song, Lin Wang
Software Mentions: 1
Published: over 3 years ago
10.1002/cam4.2360
Reduced m6A modification predicts malignant phenotypes and augmented Wnt/PI3K‐Akt signaling in gastric cancer
Cited by: 181
Author(s): Cheng Zhang, Mengqi Zhang, Shaohua Ge, Wenwen Huang, Xun Lin, Jing Gao, Jifang Gong, Lin Shen
Software Mentions: 1
Published: about 5 years ago
10.1007/s00429-016-1194-0
Genetics of structural connectivity and information processing in the brain
Cited by: 16
Author(s): Sudheer Giddaluru, Thomas Espeseth, Alireza Salami, Lars T. Westlye, Anders Lundquist, Andrea Christoforou, Sven Cichon, Rolf Adolfsson, Vidar M. Steen, Ivar Reinvang, Lars Göran Nilsson, Stéphanie Le Hellard, Lars Nyberg
Software Mentions: 1
Published: over 8 years ago
10.1042/BSR20200437
Identification of a subpopulation of long-term tumor-initiating cells in colon cancer
Cited by: 5
Author(s): Linglong Peng, Yong Xiong, Rong Wang, Xiang Ling, He Zhou, Haitao Gu
Software Mentions: 1
Published: about 4 years ago
10.3390/biom11070998
The Molecular Landscape Influencing Prognoses of Epithelial Ovarian Cancer
Cited by: 3
Author(s): Chao Lien Liu, Ray-Hwang Yuan, Tsui Lien Mao
Software Mentions: 1
Published: about 3 years ago
10.1186/s13104-018-3594-0
Transcriptional network analysis on brains reveals a potential regulatory role of PPP1R3F in autism spectrum disorders
Cited by: 5
Author(s): Abolfazl Doostparast Torshizi, Jubao Duan, Kai Wang
Software Mentions: 1
Published: about 6 years ago
10.1038/srep20036
Dietary soy and meat proteins induce distinct physiological and gene expression changes in rats
Cited by: 32
Author(s): Shangxin Song, Guido Hooiveld, Mengjie Li, Zhanming Fan, Wei Zhang, Xinglian Xu, Michael Müller
Software Mentions: 1
Published: over 8 years ago
10.1038/srep30934
Prolactin Pro-Differentiation Pathway in Triple Negative Breast Cancer: Impact on Prognosis and Potential Therapy
Cited by: 30
Author(s): Vanessa M. López‐Ozuna, Ibrahim Y. Hachim, Mahmood Y. Hachim, Jean-Jacques Lebrun, Suhad Ali
Software Mentions: 1
Published: about 8 years ago
10.1038/srep40942
CD1− and CD1+ porcine blood dendritic cells are enriched for the orthologues of the two major mammalian conventional subsets
Cited by: 22
Author(s): Jane C. Edwards, Helen Everett, M. Pedrera, Helen Mokhtar, Emanuele Marchi, Ferran Soldevila, Daryan A. Kaveh, Philip J. Hogarth, Helen L. Johns, Javier Núñez-García, Falko Steinbach, Helen Crooke, Simon P. Graham
Software Mentions: 1
Published: over 7 years ago
10.1186/ar2779
Tumor necrosis factor α-induced adipose-related protein expression in experimental arthritis and in rheumatoid arthritis
Cited by: 27
Author(s): Akira Inoue, Isao Matsumoto, Yôko Tanaka, Keiichi Iwanami, Akira Kanamori, Naoyuki Ochiai, Daisuke Goto, Satoshi Ito, Takayuki Sumida
Software Mentions: 1
Published: over 15 years ago
10.1186/s12920-015-0096-y
Metabolic changes in type 2 diabetes are reflected in peripheral blood cells, revealing aberrant cytotoxicity, a viral signature, and hypoxia inducible factor activity
Cited by: 19
Author(s): Tineke C. T. M. van der Pouw Kraan, Weena J. Chen, Mathijs C. Bunck, Daniël H. van Raalte, N.J. van der Zijl, Renate E. van Genugten, Liselotte van Bloemendaal, Josefien M. Baggen, Erik H. Serné, Michaëla Diamant, Anton J.G. Horrevoets
Software Mentions: 1
Published: over 9 years ago
10.1186/s12864-016-3042-2
Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening
Cited by: 29
Author(s): Michael K. Kießling, Sven Schuierer, Silke Stertz, Martin Beibel, Sebastian Bergling, Judith Knehr, Walter Carbone, Cheryl de Vallière, Joëlle Tchinda, Tewis Bouwmeester, Klaus Seuwen, Gerhard Rogler, Guglielmo Roma
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-017-18080-9
Integration of miRNA and gene expression profiles suggest a role for miRNAs in the pathobiological processes of acute Trypanosoma cruzi infection
Cited by: 35
Author(s): Ludmila Rodrigues Pinto Ferreira, Frederico Moraes Ferreira, Laurie Laugier, Stéphanie Cabantous, Isabela Cunha Navarro, Darlan da Silva Cândido, Vagner Carvalho Rigaud, Juliana Monte Real, Glaucia Vilar Pereira, Isabela Resende Pereira, Leonardo Alexandre de Souza Ruivo, Ramendra Pati Pandey, Marilda Savoia, Jorge Kalil, Joseli Lannes-Vieira, Hidehiko Nakaya, Christophe Chevillard, Edécio Cunha‐Neto
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-70280-y
Network-based modeling of drug effects on disease module in systemic sclerosis
Cited by: 8
Author(s): Ki-Jo Kim, Su‐Jin Moon, Kyung-Su Park, Ilias Tagkopoulos
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-021-96344-1
Cancer-associated fibroblasts are associated with poor prognosis in solid type of lung adenocarcinoma in a machine learning analysis
Cited by: 18
Author(s): Kyueng‐Whan Min, Dong-Hoon Kim, Yung‐Kyun Noh, Byoung Kwan Son, Mi Jung Kwon, Ji-Yong Moon
Software Mentions: 1
Published: about 3 years ago
10.1186/1471-2407-8-394
Gene expression meta-analysis identifies metastatic pathways and transcription factors in breast cancer
Cited by: 66
Author(s): Mads Thomassen, Qihua Tan, Torben A. Kruse
Software Mentions: 1
Published: almost 16 years ago
10.1186/s12885-019-6436-0
DNA methylation of SFRP1, SFRP2, and WIF1 and prognosis of postoperative colorectal cancer patients
Cited by: 31
Author(s): Xinyan Li, Jinming Fu, Haoran Bi, Anqi Ge, Tingting Xia, Yupeng Liu, Hongru Sun, Dapeng Li, Yashuang Zhao
Software Mentions: 1
Published: almost 5 years ago
10.1016/j.stemcr.2018.01.020
The Chromatin Remodeler BPTF Activates a Stemness Gene-Expression Program Essential for the Maintenance of Adult Hematopoietic Stem Cells
Cited by: 26
Author(s): Bowen Xu, Ling Cai, Jason M. Butler, Dongliang Chen, Xiongdong Lu, David F. Allison, Rui Lu, Shahin Rafii, Joel S. Parker, Deyou Zheng, Gang Greg Wang
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2105-8-453
Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
Cited by: 7
Author(s): Tae-Min Kim, Yeun‐Jun Chung, Mun-Gan Rhyu, Myeong Ho Jung
Software Mentions: 1
Published: almost 17 years ago
10.1038/s41398-017-0086-2
Loneliness 5 years ante-mortem is associated with disease-related differential gene expression in postmortem dorsolateral prefrontal cortex
Cited by: 21
Author(s): Turhan Canli, Lei Yu, Xiaoqing Yu, Hongyu Zhao, Debra Fleischman, Robert S. Wilson, Philip L. De Jager, David A. Bennett
Software Mentions: 1
Published: over 6 years ago
10.1186/s13046-016-0426-8
RETRACTED ARTICLE: TLE3 represses colorectal cancer proliferation by inhibiting MAPK and AKT signaling pathways
Cited by: 17
Author(s): Run-Wei Yang, Yingyue Zeng, Wen Wei, Yejia Cui, Huiying Sun, Yue-Long Cai, Xin-Xin Nian, Yun-Teng Hu, Yuping Quan, Shenglu Jiang, Meng Wang, Yan Zhao, Jun-Feng Qiu, Mingxuan Li, Jia-Huan Zhang, Miao He, Liang Li, Yan‐Qing Ding, Wenting Liao
Software Mentions: 1
Published: almost 8 years ago
10.1523/JNEUROSCI.1277-17.2017
Identification of Two Classes of Somatosensory Neurons That Display Resistance to Retrograde Infection by Rabies Virus
Cited by: 37
Author(s): Gioele W. Albisetti, Alexander Ghanem, Edmund Foster, Karl‐Klaus Conzelmann, Hanns Ulrich Zeilhofer, Hendrik Wildner
Software Mentions: 1
Published: almost 7 years ago
10.18632/oncotarget.11436
Genetic variants of genes in the Notch signaling pathway predict overall survival of non-small cell lung cancer patients in the PLCO study
Cited by: 16
Author(s): Yinghui Xu, Yanru Wang, Hongliang Liu, Xiaozheng Kang, Wei Li, Qingyi Wei
Software Mentions: 1
Published: about 8 years ago
10.1111/acel.12840
Tau protein aggregation is associated with cellular senescence in the brain
Cited by: 326
Author(s): Nicolas Musi, Joseph M. Valentine, Kathryn R. Sickora, Eric Baeuerle, Cody S. Thompson, Qiang Shen, Miranda E. Orr
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12859-016-1285-1
A decision analysis model for KEGG pathway analysis
Cited by: 41
Author(s): Junli Du, Manlin Li, Zhifa Yuan, Mancai Guo, Jiuzhou Song, Xiaozhen Xie, Yulin Chen
Software Mentions: 1
Published: almost 8 years ago
10.1155/2017/6873197
Pathway-Driven Approaches of Interaction between Oxidative Balance and Genetic Polymorphism on Metabolic Syndrome
Cited by: 24
Author(s): Ho-Sun Lee, Taesung Park
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.25217
HIF-1α is required for disturbed flow-induced metabolic reprogramming in human and porcine vascular endothelium
Cited by: 110
Author(s): David Wu, Ru-Ting Huang, Robert B. Hamanaka, Matthew Krause, Myounghak Oh, Cheng-Hsiang Kuo, Recep Niğdelioğlu, Angelo Y. Meliton, Leah J. Witt, Guohao Dai, Mete Civelek, Nanduri R. Prabhakar, Yun Fang, Gökhan M. Mutlu
Software Mentions: 1
Published: over 7 years ago
10.3389/fimmu.2018.02992
Resveratrol Attenuates Allergic Asthma and Associated Inflammation in the Lungs Through Regulation of miRNA-34a That Targets FoxP3 in Mice
Cited by: 61
Author(s): Esraah Alharris, Hasan Alghetaa, Ratanesh Seth, Saurabh Chatterjee, Narendra P. Singh, Mitzi Nagarkatti, Prakash Nagarkatti
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2017.00121
Zebra Fish Lacking Adaptive Immunity Acquire an Antiviral Alert State Characterized by Upregulated Gene Expression of Apoptosis, Multigene Families, and Interferon-Related Genes
Cited by: 14
Author(s): Pablo García-Valtanen, Alicia Martínez‐López, Azucena López-Muñoz, Melissa Belló-Pérez, Regla María Medina-Gali, María del Mar Ortega-Villaizán, Mónica Varela, António Figueras, Víctoriano Mulero, Beatriz Novoa, A. Estepa, Julio Coll
Software Mentions: 1
Published: over 7 years ago
10.3389/fimmu.2021.661323
Tumor NLRP3-Derived IL-1β Drives the IL-6/STAT3 Axis Resulting in Sustained MDSC-Mediated Immunosuppression
Cited by: 35
Author(s): Isak W. Tengesdal, Alberto Dinarello, Nicholas E. Powers, Matthew A. Burchill, Leo A. B. Joosten, Carlo Marchetti, Charles A. Dinarello
Software Mentions: 1
Published: about 3 years ago
10.3389/fimmu.2021.660488
Human Hyaluronidase PH20 Potentiates the Antitumor Activities of Mesothelin-Specific CAR-T Cells Against Gastric Cancer
Cited by: 17
Author(s): Ruocong Zhao, Yuanbin Cui, Yongfang Zheng, Shanglin Li, Jiang Lv, Qianni Wu, Youguo Long, Suna Wang, Yao Yao, Wei Wei, Jie Yang, Bin-Chao Wang, Zhenfeng Zhang, Hui Zeng, Yangqiu Li
Software Mentions: 1
Published: about 3 years ago
10.3389/fmicb.2015.00952
The vaginal isolate Lactobacillus paracasei LPC-S01 (DSM 26760) is suitable for oral administration
Cited by: 25
Author(s): Silvia Balzaretti, Valentina Taverniti, Greta Rondini, Giorgio Marcolegio, Mario Minuzzo, Maria Chiara Remagni, Walter Fiore, Stefania Arioli, Simone Guglielmetti
Software Mentions: 1
Published: about 9 years ago
10.3389/fmolb.2021.648752
The Prognostic Value of PERK in Cancer and Its Relationship With Immune Cell Infiltration
Cited by: 9
Author(s): Peng Wang, Liying Han, Mei Yu, Zhengyu Cao, Xiaoning Li, Yunxia Shao
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.694490
Novel Immune Infiltrating Cell Signature Based on Cell Pair Algorithm Is a Prognostic Marker in Cancer
Cited by: 25
Author(s): Hao Zhang, Zeyu Wang, Ziyu Dai, Wantao Wu, Hui Cao, Shuyu Li, Nan Zhang, Quan Cheng
Software Mentions: 1
Published: about 3 years ago
10.3389/fcell.2021.709069
Long Non-coding RNA Double Homeobox A Pseudogene 8: A Novel Oncogenic Propellant in Human Cancer
Cited by: 4
Author(s): Chen Xue, Xiaona Cai, Junjun Jia
Software Mentions: 1
Published: almost 3 years ago
10.3389/fonc.2021.642134
Bromodomain Inhibition Attenuates the Progression and Sensitizes the Chemosensitivity of Osteosarcoma by Repressing GP130/STAT3 Signaling
Cited by: 5
Author(s): Yafei Jiang, Gangyang Wang, Haoran Mu, Xiao‐Jun Ma, Zhuoying Wang, Yu Lv, Tao Zhang, Jing Xu, Jinzeng Wang, Yunqi Li, Jing Han, Mengkai Yang, Zongyi Wang, Ke Zeng, Xinmeng Jin, Song Xue, Mingzhu Yin, Wei Sun, Yingqi Hua, Zhengdong Cai
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.657984
Identification of Target PTEN-Based miR-425 and miR-576 as Potential Diagnostic and Immunotherapeutic Biomarkers of Colorectal Cancer With Liver Metastasis
Cited by: 5
Author(s): Xiaoyun Hu, Qiuchen Chen, Hao Guo, Kuo Li, Boshi Fu, Yu Chen, Haishan Zhao, Minjie Wei, Yalun Li, Huizhe Wu
Software Mentions: 1
Published: about 3 years ago
10.1002/2211-5463.13140
The lncRNA ALMS1‐IT1 may promote malignant progression of lung adenocarcinoma via AVL9‐mediated activation of the cyclin‐dependent kinase pathway
Cited by: 16
Author(s): Tian Luan, Tianye Zhang, Zhonghua Lv, Bixi Guan, Jianyu Xu, Jian Li, Mingxu Li, Sen Hu
Software Mentions: 1
Published: over 3 years ago
10.1016/j.exphem.2020.11.005
The RUNX1/RUNX1T1 network: translating insights into therapeutic options
Cited by: 13
Author(s): Laura E. Swart, Olaf Heidenreich
Software Mentions: 1
Published: over 3 years ago