Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: finder
https://packages.ecosyste.ms/registries/pypi.org/packages/finder
Command line interface for searching a given pattern in the given directory/file paths
3 versions
Latest release: over 7 years ago
48 downloads last month
Papers Mentioning finder 236
10.3390/v6062444
Molecular Characterization of Watermelon Chlorotic Stunt Virus (WmCSV) from PalestineCited by: 14
Author(s): Mohammed S. Ali‐Shtayeh, Rana M. Jamous, Omar B. Mallah, Salam Y. Abu-Zeitoun
Software Mentions: 1
Published: over 10 years ago
10.3390/v11111027
Viromics Reveal a Number of Novel RNA Viruses in Swedish MosquitoesCited by: 27
Author(s): Pontus Öhlund, Juliette Hayer, Hanna Lundén, Jenny C. Hesson, Anne-Lie Blomström
Software Mentions: 1
Published: about 5 years ago
10.3390/v12070730
Beyond Cholera: Characterization of zot-Encoding Filamentous Phages in the Marine Fish Pathogen Vibrio anguillarumCited by: 14
Author(s): Jesper Juel Mauritzen, Daniel Castillo, Demeng Tan, Sine Lo Svenningsen, Mathias Middelboe
Software Mentions: 1
Published: over 4 years ago
10.3390/v13071384
Bacteriophages fEV-1 and fD1 Infect Yersinia pestisCited by: 6
Author(s): Mikael Skurnik, Salla Jaakkola, Laura Mattinen, Lotta von Ossowski, Ayesha Nawaz, Maria I. Pajunen, Lotta Happonen
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.6774
Molecular characterization and phylogenetic analysis of a <i>Squash leaf curl virus</i> isolate from Baja California Sur, MexicoCited by: 6
Author(s): Diana Medina-Hernández, María Goretty Caamal-Chan, Mayela Vargas-Salinas, Abraham Loera-Muro, Aarón Barraza, Ramón Jaime Holguín-Peña
Software Mentions: 1
Published: over 5 years ago
10.3390/ph13090241
Silencing of Exosomal miR-181a Reverses Pediatric Acute Lymphocytic Leukemia Cell ProliferationCited by: 18
Author(s): Shabirul Haque, Sarah R. Vaiselbuh
Software Mentions: 1
Published: about 4 years ago
10.3390/plants9101272
Molecular Characterization of the Complete Coding Sequence of Olive Leaf Yellowing-Associated VirusCited by: 8
Author(s): Ana Belén Ruiz-García, Thierry Candresse, Célia Canales, Félix Morán, Carlos Machado de Oliveira, Edson Bertolini, Antonio Olmos
Software Mentions: 1
Published: about 4 years ago
10.3390/plants10040776
Genome-Wide Transcriptomic Identification and Functional Insight of Lily WRKY Genes Responding to Botrytis Fungal DiseaseCited by: 7
Author(s): Shipra Kumari, Bashistha Kumar Kanth, Ju Young Ahn, Jong Hwa Kim, Geung–Joo Lee
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pcbi.1000383
A Structure-Based Approach for Detection of Thiol Oxidoreductases and Their Catalytic Redox-Active Cysteine ResiduesCited by: 26
Author(s): Stefano M. Marino, Vadim N. Gladyshev
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pcbi.1000908
Computational Prediction and Experimental Verification of New MAP Kinase Docking Sites and Substrates Including Gli Transcription FactorsCited by: 74
Author(s): Thomas Whisenant, David T. Ho, Ryan W. Benz, Jeffrey S. Rogers, Robyn M. Kaake, Elizabeth A. Gordon, Lan Huang, Pierre Baldi, Lee Bardwell
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0206382
Molecular characterization of an unusual new plant RNA virus reveals an evolutionary link between two different virus familiesCited by: 6
Author(s): Sun‐Jung Kwon, Gug-Seoun Choi, Boram Choi, Jang‐Kyun Seo
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0145223
Clustered Regularly Interspaced Short Palindromic Repeats Are emm Type-Specific in Highly Prevalent Group A StreptococciCited by: 5
Author(s): Po Xing Zheng, Yuen Chi Chan, Chien-Shun Chiou, Chuan Chiang-Ni, Shu Ying Wang, Pei Jane Tsai, Woei Jer Chuang, Yee Shin Lin, Ching Chuan Liu, Jiunn Jong Wu
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0134147
Characterization by Small RNA Sequencing of Taro Bacilliform CH Virus (TaBCHV), a Novel BadnavirusCited by: 25
Author(s): Syeda Amber Kazmi, Zuokun Yang, Ní Hóng, Guoping Wang, Yanfen Wang
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0195835
p73, like its p53 homolog, shows preference for inverted repeats forming cruciformsCited by: 10
Author(s): Jana Čechová, Jan Coufal, Eva Brázdová Jagelská, Miroslav Fojta, Václav Brázda
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0103963
Transcriptome Wide Identification and Validation of Calcium Sensor Gene Family in the Developing Spikes of Finger Millet Genotypes for Elucidating Its Role in Grain Calcium AccumulationCited by: 47
Author(s): Uma Maheshwar Singh, Muktesh Chandra, S. C. Shankhdhar, Anil Kumar
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0012666
Evidence of Transfer by Conjugation of Type IV Secretion System Genes between Bartonella Species and Rhizobium radiobacter in AmoebaCited by: 33
Author(s): Watcharee Saisongkorh, Caroline Robert, Bernard La Scola, Didier Raoult, Jean‐Marc Rolain
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0124053
Identification and Molecular Characterisation of a Novel Mu-Like Bacteriophage, SfMu, of Shigella flexneriCited by: 19
Author(s): Richa Jakhetia, Naresh K. Verma
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0057122
The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis)Cited by: 136
Author(s): Yoji Nakamura, Naoto Sasaki, Masahiro Kobayashi, Nobuhiko Ojima, Motoshige Yasuike, Yuya Shigenobu, Masataka Satomi, Yoshiya Fukuma, Koji Shiwaku, Atsumi Tsujimoto, Takanori Kobayashi, Ichiro Nakayama, Fuminari Ito, Kazuhiro Nakajima, Motohiko Sano, Tokio Wada, Satoru Kuhara, Kiyoshi Inouye, Takashi Gojobori, Kazuho Ikeo
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0070744
Hepatitis C Virus Induced miR200c Down Modulates FAP-1, a Negative Regulator of Src Signaling and Promotes Hepatic FibrosisCited by: 41
Author(s): S. Ramachandran, Haseeb Ilias Basha, Nayan J. Sarma, Yiing Lin, Jeffrey S. Crippin, William C. Chapman, Thalachallour Mohanakumar
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0018179
Regulatory Response to Carbon Starvation in Caulobacter crescentusCited by: 65
Author(s): Leticia Britos, Eduardo Abeliuk, Thomas Taverner, Mary Lipton, Harley H. McAdams, Lucy Shapiro
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0257878
Large-scale identification of extracellular plant miRNAs in mammals implicates their dietary intakeCited by: 4
Author(s): Xi Chen, Lu Liu, Qinjie Chu, Shuo Sun, Yixuan Wu, Tong Zhou, Weijia Fang, Michael P. Timko, Longjiang Fan
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.pone.0014009
Characterisation of PduS, the pdu Metabolosome Corrin Reductase, and Evidence of Substructural Organisation within the Bacterial MicrocompartmentCited by: 34
Author(s): Joshua B. Parsons, Andrew D. Lawrence, Kirsty J. McLean, Andrew W. Munro, Stephen E. J. Rigby, Martin J. Warren
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0095088
Molecular Characterization and Expression Analysis of Chloroplast Protein Import Components in Tomato (Solanum lycopersicum)Cited by: 14
Author(s): Yan Jin, James H. Campbell, Bernard R. Glick, Matthew D. Smith, Yan Liang
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0053020
Familiar Hypopigmentation Syndrome in Sheep Associated with Homozygous Deletion of the Entire Endothelin Type-B Receptor GeneCited by: 12
Author(s): Gesine Lühken, Katharina Fleck, Alfredo Pauciullo, M. Huisinga, G. Erhardt
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0093765
Studies on Inhibition of Respiratory Cytochrome bc1 Complex by the Fungicide Pyrimorph Suggest a Novel Inhibitory MechanismCited by: 25
Author(s): Yumei Xiao, Lothar Esser, Fei Zhou, Chang Li, Yihui Zhou, Chao Yu, Zhaohai Qin, Di Xia
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0141514
A Novel SLC27A4 Splice Acceptor Site Mutation in Great Danes with IchthyosisCited by: 22
Author(s): Julia Metzger, Anne Wöhlke, R. Mischke, Annalena Hoffmann, M. Hewicker‐Trautwein, Eva-Maria Küch, Hassan Y. Naim, O. Distl
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0185720
The anti-myeloma activity of bone morphogenetic protein 2 predominantly relies on the induction of growth arrest and is apoptosis-independentCited by: 6
Author(s): Charlotte Lagler, Mohamed El-Mesery, Alexander C. Kübler, Urs Müller‐Richter, Thorsten Stühmer, J. Curtis Nickel, Thomas Müller, Harald Wajant, Axel Seher
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0046023
Sequence Features Contributing to Chromosomal Rearrangements in Neisseria gonorrhoeaeCited by: 12
Author(s): Russell Spencer-Smith, Eldho M. Varkey, Mark D. Fielder, Lori Snyder
Software Mentions: 1
Published: about 12 years ago
10.1007/s10577-015-9515-3
Highly distinct chromosomal structures in cowpea (Vigna unguiculata), as revealed by molecular cytogenetic analysisCited by: 24
Author(s): Aiko Iwata‐Otsubo, Jer-Young Lin, Navdeep Gill, Scott A. Jackson
Software Mentions: 1
Published: almost 9 years ago
10.1007/s00284-020-01972-x
Complete Genome Sequence of Pantoea ananatis Strain NN08200, an Endophytic Bacterium Isolated from SugarcaneCited by: 7
Author(s): Quan Zeng, Guoying Shi, ZeMei Nong, XueLian Ye, ChunJin Hu
Software Mentions: 1
Published: over 4 years ago
10.1007/s00259-018-3953-z
Defining the optimal method for measuring baseline metabolic tumour volume in diffuse large B cell lymphomaCited by: 101
Author(s): Hajira Ilyas, N. George Mikhaeel, Joel Dunn, Fareen Rahman, Henrik Møller, Daniel Smith, Sally F. Barrington
Software Mentions: 1
Published: almost 7 years ago
10.3389/fcimb.2017.00052
The Tudor Staphylococcal Nuclease Protein of Entamoeba histolytica Participates in Transcription Regulation and Stress ResponseCited by: 6
Author(s): Javier Cázares-Ápatiga, Christian Medina-Gómez, Bibiana Chávez‐Munguía, Mercedes Calixto-Gálvez, Esther Orozco, Carlos Vázquez‐Calzada, Aarón Martínez-Higuera, Mario A. Rodríguez
Software Mentions: 1
Published: over 7 years ago
10.3389/fgene.2012.00206
Molecular mechanisms of genetic variation and transcriptional regulation of CYP2C19Cited by: 27
Author(s): Nuala A. Helsby, Kathryn Burns
Software Mentions: 1
Published: almost 13 years ago
10.3389/fgene.2021.627402
Mitochondrial Genome Structures and Phylogenetic Analyses of Two Tropical Characidae FishesCited by: 18
Author(s): Cheng‐He Sun, Hongyi Liu, Nan Xu, Xiaoli Zhang, Zhang Qun, Bo‐Ping Han
Software Mentions: 1
Published: almost 4 years ago
10.3389/fimmu.2020.606721
Immune Checkpoint Molecules—Inherited Variations as Markers for Cancer RiskCited by: 23
Author(s): Marta Wagner, Monika Jasek, Lidia Karabon
Software Mentions: 1
Published: almost 4 years ago