Ecosyste.ms: Papers

10.12688/f1000research.14013.2

Taxa: An R package implementing data standards and methods for taxonomic data
Cited by: 23
Author(s): Zachary Foster, Scott Chamberlain, Niklaus J. Grünwald
Software Mentions: 12
Published: over 5 years ago

10.1371/journal.pcbi.1007358

Seven quick tips for analysis scripts in neuroimaging
Cited by: 11
Author(s): Marijn van Vliet
Software Mentions: 8
Published: about 4 years ago

10.1186/s12915-019-0734-5

Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long-read data
Cited by: 25
Author(s): Ellie E. Armstrong, Ryan W. Taylor, Danny E. Miller, Christopher B. Kaelin, Gregory S. Barsh, Elizabeth A. Hadly, Dmitri A. Petrov
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2019.02372

Phylogeography and Ecological Niche Shape the Cichlid Fish Gut Microbiota in Central American and African Lakes
Cited by: 25
Author(s): Laura Baldo, Joan Lluís Riera, Walter Salzburger, Marta Barluenga
Software Mentions: 5
Published: over 4 years ago

10.15252/msb.156172

Comprehensive assembly of novel transcripts from unmapped human RNA‐Seq data and their association with cancer
Cited by: 17
Author(s): Majid Kazemian, Min Ren, Jian-Xin Lin, Wei Liao, Rosanne Spolski, Warren J. Leonard
Software Mentions: 5
Published: almost 9 years ago

10.3389/fcimb.2019.00216

Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis
Cited by: 78
Author(s): Anna Lundmark, Yue Hu, Mikael Huss, Gunnar Johannsen, Anders F. Andersson, Tülay Yucel‐Lindberg
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.4839

Toward accurate species‐level metabarcoding of arthropod communities from the tropical forest canopy
Cited by: 44
Author(s): Thomas J. Creedy, Wui Shen Ng, Alfried P. Vogler
Software Mentions: 5
Published: over 5 years ago

10.1186/s13104-016-2064-9

DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses
Cited by: 40
Author(s): Marie Lisandra Zepeda Mendoza, Kristine Bohmann, Aldo Carmona Baez, M. Thomas P. Gilbert
Software Mentions: 4
Published: about 8 years ago

10.3390/nu11061390

Influence of Socio-Economic and Psychosocial Profiles on the Human Breast Milk Bacteriome of South African Women
Cited by: 14
Author(s): Anna Ojo-Okunola, Shantelle Claassen-Weitz, Kilaza Samson Mwaikono, Sugnet Gardner-Lubbe, Dan J. Stein, Heather J. Zar, Mark P. Nicol, Elloise du Toit
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0085611

Saliva from Obese Individuals Suppresses the Release of Aroma Compounds from Wine
Cited by: 87
Author(s): Paola Piombino, Alessandro Genovese, Sabrina Esposito, Luigi Moio, Pier Paolo Cutolo, Angela Chambery, Valeria Severino, Elisabetta Moneta, Daniel P. Smith, Sarah M. Owens, Jack A. Gilbert, Danilo Ercolini
Software Mentions: 3
Published: over 10 years ago

10.1186/s12866-018-1367-5

Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study
Cited by: 13
Author(s): Martin Steen Mortensen, Bo Jensen, Jeanne V.A. Williams, Asker Brejnrod, Lee O’Brien Andersen, Dennis Röser, Bente Utoft Andreassen, Andreas Munk Petersen, Christen Rune Stensvold, Søren J. Sørensen, Karen A. Krogfelt
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2017.01832

Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
Cited by: 79
Author(s): Stephanie D. Jurburg, Inês Nunes, Asker Brejnrod, Samuel Jacquiod, Anders Priemé, Søren J. Sørensen, Jan Dirk van Elsas, Joana Falcão Salles
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-54446-x

High throughput barcoding method for genome-scale phasing
Cited by: 13
Author(s): David Redin, Tobias Frick, Hooman Aghelpasand, Max Käller, Erik Borgström, Remi‐André Olsen, Afshin Ahmadian
Software Mentions: 3
Published: over 4 years ago

10.1186/s12938-016-0222-x

Detection of Aβ plaque deposition in MR images based on pixel feature selection and class information in image level
Cited by: 2
Author(s): Yongming Li, Xinjian Zhu, Wang Pin, Jie Wang, Shujun Liu, Fan Li, Mingguo Qiu
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-017-4346-6

RNA-seq-based genome annotation and identification of long-noncoding RNAs in the grapevine cultivar ‘Riesling’
Cited by: 14
Author(s): Zachary N. Harris, László Kovács, Jason P. Londo
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0015951

A New Highly Conserved Antibiotic Sensing/Resistance Pathway in Firmicutes Involves an ABC Transporter Interplaying with a Signal Transduction System
Cited by: 29
Author(s): Stéphanie Coumes-Florens, Céline Brochier-Armanet, Annick Guiseppi, François Denizot, Maryline Foglino
Software Mentions: 1
Published: over 13 years ago

10.1120/jacmp.v15i4.4889

Automating checks of plan check automation
Cited by: 21
Author(s): Tarek Halabi, Hsiao‐Ming Lu
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0124182

Impact of Anodal and Cathodal Transcranial Direct Current Stimulation over the Left Dorsolateral Prefrontal Cortex during Attention Bias Modification: An Eye-Tracking Study
Cited by: 70
Author(s): Alexandre Heeren, Chris Baeken, Marie‐Anne Vanderhasselt, Pierre Philippot, Rudi De Raedt
Software Mentions: 1
Published: about 9 years ago

10.1007/s40520-015-0517-y

Recommendations for the conduct of clinical trials for drugs to treat or prevent sarcopenia
Cited by: 85
Author(s): Jean Yves Reginster, Cyrus Cooper, René Rizzoli, John А. Kanis, Geoff Appelboom, Ivan Bautmans, Heike A. Bischoff‐Ferrari, Maarten Boers, Maria Luisa Brandi, Olivier Bruyère, Antonio Cherubini, Bruno Flamion, Roger A. Fielding, Andrea Ildikó Gáspárik, Luc J. C. van Loon, Eugène McCloskey, Bruce Mitlak, Alberto Pilotto, Suzanne Reiter-Niesert, Yves Rolland, Y Tsouderos, Marjolein Visser, Alfonso J. Cruz-Jentoft
Software Mentions: 1
Published: over 8 years ago