pypi: excel | Projects | Ecosyste.ms: Papers

10.1111/mec.14084

Divergence of annual and perennial species in the Brassicaceae and the contribution of cis-acting variation atFLCorthologues
Cited by: 58
Author(s): Christiane Kiefer, Edouard Severing, Robert Karl, Sara Bergonzi, Marcus A. Koch, Achim Tresch, George Coupland
Software Mentions: 4
Published: over 7 years ago

10.1186/s40168-017-0363-6

Pancreatic cyst fluid harbors a unique microbiome
Cited by: 53
Author(s): Shan Li, Gwenny M. Fuhler, Nahush Bn, Tony Jose, Marco J. Bruno, Maikel P. Peppelenbosch, Sergey R. Konstantinov
Software Mentions: 4
Published: about 7 years ago

10.1136/bmjopen-2019-035640

Prevalence and clinical implications of respiratory viruses in stable chronic obstructive pulmonary disease (COPD) and exacerbations: a systematic review and meta-analysis protocol
Cited by: 8
Author(s): Anastasia Maria Kefala, Rebecca Fortescue, Gioulinta S. Alimani, Prodromos Kanavidis, Melissa McDonnell, Emmanouil Magiorkinis, Spyridon Megremis, Dimitrios Paraskevis, Chrysa Voyiatzaki, Georgios A. Mathioudakis, Effie Papageorgiou, Nikolaos G. Papadopoulos, Jørgen Vestbo, Apostolos Beloukas, Alexander G. Mathioudakis
Software Mentions: 4
Published: over 4 years ago

10.1038/s41398-021-01309-7

Gut microbial taxa elevated by dietary sugar disrupt memory function
Cited by: 42
Author(s): Emily E. Noble, C. Anders Olson, Elizabeth A. Davis, Linda Tsan, Yen‐Wei Chen, Ruth Schade, Clarissa Liu, Andrea N. Suarez, Roshonda B. Jones, Claire de La Serre, Xia Yang, Elaine Y. Hsiao, Scott E. Kanoski
Software Mentions: 4
Published: over 3 years ago

10.1080/21505594.2021.1958057

Transcriptional response of Aspergillus fumigatus to copper and the role of the Cu chaperones
Cited by: 6
Author(s): Duaa Anabosi, Zohar Meir, Yana Shadkchan, Mariana Handelman, Ammar Abou-Kandil, Annie Yap, Daniel Urlings, Morgan Gold, Sven Krappmann, Hubertus Haas, Nir Osherov
Software Mentions: 4
Published: about 3 years ago

10.3389/fmicb.2017.00548

Transcriptomic and Metabolomics Profiling of Phage–Host Interactions between Phage PaP1 and Pseudomonas aeruginosa
Cited by: 26
Author(s): Xia Zhao, Mengyu Shen, Xingyu Jiang, Wei Shen, Qian Zhong, Yuhui Yang, Yinling Tan, Melissa Agnello, Xuesong He, Fuquan Hu, Shuai Le
Software Mentions: 4
Published: over 7 years ago

10.3389/fimmu.2020.608895

Gentamicin Induced Microbiome Adaptations Associate With Increased BCAA Levels and Enhance Severity of Influenza Infection
Cited by: 6
Author(s): Ye Sun, Zi He, Jiajia Li, Saisai Gong, Shunzong Yuan, Tao Li, Nianzhi Ning, Xing Li, Liangyan Zhang, Fanghong Chen, Li Zhan, Jianxin Wang, Di Luo, Hui Wang
Software Mentions: 4
Published: over 3 years ago

10.1186/s12916-020-01726-3

COVID-19 length of hospital stay: a systematic review and data synthesis
Cited by: 385
Author(s): Eleanor M. Rees, Emily Nightingale, Yalda Jafari, Naomi R. Waterlow, Samuel Clifford, Carl A. B. Pearson, Thibaut Jombart, Simon R. Procter, Gwenan M. Knight
Software Mentions: 4
Published: about 4 years ago

10.1186/s12913-020-05806-1

Limited predictive value of admission time in clinical psychiatry
Cited by: 0
Author(s): Peter Kreuzer, Stefan Günther, Jorge Simões, Michael Ziereis, Berthold Langguth
Software Mentions: 4
Published: about 4 years ago

10.1016/j.stem.2020.07.019

Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation
Cited by: 36
Author(s): Daniel Ortmann, Stephanie Brown, Anne Czechanski, Selcan Aydin, Daniele Muraro, Yuanhua Huang, Rute Tomaz, Anna Osnato, Giovanni Canu, Brandon T Wesley, Daniel A. Skelly, Oliver Stegle, Tae-Young Choi, Gary A. Churchill, Christopher L. Baker, Peter J. Rugg‐Gunn, Steven C. Munger, Laura G. Reinholdt, Ludovic Vallier
Software Mentions: 4
Published: about 4 years ago

10.1186/1471-2105-14-S7-S14

Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements
Cited by: 16
Author(s): Swaraj Basu, Ferenc Müller, Remo Sanges
Software Mentions: 4
Published: over 11 years ago

10.1186/1471-2105-5-130

Cited by: 92
Author(s): Sook Jung, Christopher Jesudurai, Margaret Staton, Zhidian Du, Stephen P. Ficklin, Il-Hyung Cho, Albert G. Abbott, Jeffrey Tomkins, Dorrie Main
Software Mentions: 4
Published: almost 21 years ago

10.1371/journal.pone.0237397

Spatial heterogeneity of coral reef benthic communities in Kenya
Cited by: 5
Author(s): Juliet Karisa, David Obura, Chaolun Allen Chen
Software Mentions: 4
Published: about 4 years ago

10.1016/j.celrep.2013.08.012

In Vivo T-Box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuromesodermal Bipotency
Cited by: 95
Author(s): George E. Gentsch, Nick Owens, Stephen R. Martin, Paul Piccinelli, Tiago Faial, Matthew Trotter, Michael J. Gilchrist, James C. Smith
Software Mentions: 4
Published: about 11 years ago

10.1186/s12864-017-4122-7

Chemosensory gene expression in olfactory organs of the anthropophilic Anopheles coluzzii and zoophilic Anopheles quadriannulatus
Cited by: 25
Author(s): Giridhar Athrey, Luciano V. Cosme, Zachary R. Popkin-Hall, Sharmila Pathikonda, Willem Takken, Michel A. Slotman
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0246446

Using touchscreen equipped operant chambers to study animal cognition. Benefits, limitations, and advice
Cited by: 8
Author(s): Benjamin M Seitz, Kelsey McCune, Maggie MacPherson, Luisa Bergeron, Aaron P. Blaisdell, Corina J. Logan
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0245222

Early Holocene Scandinavian foragers on a journey to affluence: Mesolithic fish exploitation, seasonal abundance and storage investigated through strontium isotope ratios by laser ablation (LA‐MC-ICP‐MS)
Cited by: 9
Author(s): Adam Boëthius, Mathilda Kjällquist, Melanie Kielman‐Schmitt, Torbjörn Ahlström, Lars Larsson
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12859-020-3402-4

proMAD: semiquantitative densitometric measurement of protein microarrays
Cited by: 1
Author(s): Anna Jaeschke, Hagen Eckert, Laura J. Bray
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0124671

From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows
Cited by: 158
Author(s): Dáithí C. Murray, Megan L. Coghlan, Michael Bunce
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0093846

The SLE Transcriptome Exhibits Evidence of Chronic Endotoxin Exposure and Has Widespread Dysregulation of Non-Coding and Coding RNAs
Cited by: 104
Author(s): Lei Shi, Zhe Zhang, Angela M Yu, Wei Wang, Zhi Wei, Ehtisham Akhter, Kelly Maurer, Patrícia Costa-Reis, Li Song, Michelle Petri, Kathleen E. Sullivan
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0185207

Escape Excel: A tool for preventing gene symbol and accession conversion errors
Cited by: 8
Author(s): Eric A. Welsh, Paul A. Stewart, Brent M. Kuenzi, James A. Eschrich
Software Mentions: 4
Published: about 7 years ago

10.1038/srep26846

Transcriptome analysis of human ageing in male skin shows mid-life period of variability and central role of NF-κB
Cited by: 48
Author(s): Daniel Haustead, Andrew Stevenson, Vishal Saxena, Fiona Marriage, Martin J Firth, Robyn C Silla, Lisa W. Martin, Katharine F. Adcroft, Suzanne Rea, Philip J. Day, Phillip E. Melton, Fiona Wood, Mark W. Fear
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2407-9-396

An informatics supported web-based data annotation and query tool to expedite translational research for head and neck malignancies
Cited by: 12
Author(s): Waqas Amin, Hyunseok P. Kang, Ann Marie Egloff, Harpreet Singh, Kerry Trent, Jennifer Ridge-Hetrick, Raja R. Seethala, Jennifer R. Grandis, Anil V. Parwani
Software Mentions: 4
Published: about 15 years ago

10.1038/srep23518

The chemosensory receptors of codling moth Cydia pomonella–expression in larvae and adults
Cited by: 46
Author(s): William B. Walker, Francisco Gonzalez, Stephen F. Garczynski, Peter Witzgall
Software Mentions: 4
Published: over 8 years ago

10.3390/ani10050784

The Effect of Age, Stage of the Annual Production Cycle and Pregnancy-Rank on the Relationship between Liveweight and Body Condition Score in Extensively Managed Romney Ewes
Cited by: 7
Author(s): Jimmy Semakula, René A. Corner-Thomas, S. T. Morris, Hugh T. Blair, P. R. Kenyon
Software Mentions: 3
Published: over 4 years ago

10.1186/1756-0500-5-52

Meta-analyses and Forest plots using a microsoft excel spreadsheet: step-by-step guide focusing on descriptive data analysis
Cited by: 545
Author(s): Jeruza Lavanholi Neyeloff, Sandra Cristina Pereira Costa Fuchs, Leila Beltrami Moreira
Software Mentions: 3
Published: almost 13 years ago

10.3390/vaccines8010114

Advanced Safety and Genetic Stability in Mice of a Novel DNA-Launched Venezuelan Equine Encephalitis Virus Vaccine with Rearranged Structural Genes
Cited by: 8
Author(s): Dylan M. Johnson, Kevin J. Sokoloski, Jenny D. Jokinen, Tia L. Pfeffer, Yong Kyu Chu, Robert S. Adcock, Donghoon Chung, Irina Tretyakova, Peter Pushko, Igor S. Lukashevich
Software Mentions: 3
Published: over 4 years ago

10.11604/pamj.supp.2019.33.2.17116

Strengthening immunization service delivery post Ebola virus disease (EVD) outbreak in Liberia 2015-2017
Cited by: 5
Author(s): Adolphus T Clarke, Nicholas Blidi, Joseph Yokie, Mary Momolu, Chukwuemeka Agbo, Roland Tuopileyi, Julius Monday Rude, Mohammed Abdu Seid, Dereje Yohannes, Zakari Wambai, Alex Gasasira, Laura Skrip, Ngozi Kennedy, Evans Lablah, Joseph Okeibunor, Mamoudou Harouna Djingarey, Ambrose Talisuna, Ali Ahmed Yahaya, Soatiana Rajatonirina, Ibrahima Socé Fall
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40900-021-00305-x

The use of digital storytelling of patients’ stories as an approach to translating knowledge: a scoping review
Cited by: 15
Author(s): Elly Park, Mary Forhan, Allyson Jones
Software Mentions: 3
Published: about 3 years ago

10.3390/molecules23112954

Molecular Modeling and In Vitro Studies of a Neutral Oxime as a Potential Reactivator for Acetylcholinesterase Inhibited by Paraoxon
Cited by: 15
Author(s): Reuel L. de Paula, Joyce S. F. D. de Almeida, Samir F. A. Cavalcante, Arlan da Silva Gonçalves, Alessandro B. C. Simas, Tanos C. C. França, Martin Vališ, Kamil Kuča, Eugenie Nepovimová, José Mauro Granjeiro
Software Mentions: 3
Published: about 6 years ago

10.1155/2017/1278932

Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis
Cited by: 39
Author(s): Georgios A. Pavlopoulos, David Páez-Espino, Nikos C. Kyrpides, Ioannis Iliopoulos
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pntd.0003372

An Updated Insight into the Sialotranscriptome of Triatoma infestans: Developmental Stage and Geographic Variations
Cited by: 35
Author(s): Alexandra Schwarz, Nora Medrano-Mercado, Günter A. Schaub, Cláudio J. Struchiner, M. D. Bargues, Michael Z. Levy, José M. C. Ribeiro
Software Mentions: 3
Published: almost 10 years ago

10.3390/biom11081133

TCMacro: A Simple and Robust ImageJ-Based Method for Automated Measurement of Tail Coiling Activity in Zebrafish
Cited by: 2
Author(s): Kevin Adi Kurnia, Fiorency Santoso, Bonifasius Putera Sampurna, Gilbert Audira, Jong-Chin Huang, Kelvin H.‐C. Chen, Chung-Der Hsiao
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22031167

Glutamine Uptake via SNAT6 and Caveolin Regulates Glutamine–Glutamate Cycle
Cited by: 14
Author(s): Nikhil R. Gandasi, Vasiliki Arapi, Michel‐Edwar Mickael, Prajakta A. Belekar, Louise Granlund, Lakshmi Kothegala, Robert Fredriksson, Sonchita Bagchi
Software Mentions: 3
Published: almost 4 years ago

10.7554/eLife.63101

Investigation of Drosophila fruitless neurons that express Dpr/DIP cell adhesion molecules
Cited by: 12
Author(s): Savannah G Brovero, Julia C Fortier, Hongru Hu, Pamela C Lovejoy, Nicole R. Newell, Colleen M Palmateer, Ruei-Ying Tzeng, Pei-Tseng Lee, Kai Zinn, Michelle N. Arbeitman
Software Mentions: 3
Published: over 3 years ago

10.1186/s12936-018-2517-9

Screening and field performance of powder-formulated insecticides on eave tube inserts against pyrethroid resistant Anopheles gambiae s.l.: an investigation into ‘actives’ prior to a randomized controlled trial in Côte d’Ivoire
Cited by: 9
Author(s): Welbeck A. Oumbouke, Innocent Z. Tia, Antoine M. G. Barreaux, Alphonsine A. Koffi, Eleanore D. Sternberg, Matthew B. Thomas, Raphaël N’Guessan
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.43877

Detailed analysis of chick optic fissure closure reveals Netrin-1 as an essential mediator of epithelial fusion
Cited by: 27
Author(s): Holly Hardy, James Prendergast, Aara Patel, Sunit Dutta, Violeta Trejo-Reveles, Hannah Kröger, Andrea R. Yung, Lisa V. Goodrich, Brian P. Brooks, Jane C. Sowden, Joe Rainger
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.22037

Operon mRNAs are organized into ORF-centric structures that predict translation efficiency
Cited by: 119
Author(s): David H Burkhardt, Silvi Rouskin, Yan Zhang, Gene-Wei Li, Jonathan S. Weissman, Carol A. Gross
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12984-020-00788-x

Commercial head-mounted display virtual reality for upper extremity rehabilitation in chronic stroke: a single-case design study
Cited by: 23
Author(s): Mattias Erhardsson, Margit Alt Murphy, Katharina S. Sunnerhagen
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms21113746

Differential Secretome Profiling of Human Osteoarthritic Synoviocytes Treated with Biotechnological Unsulfated and Marine Sulfated Chondroitins
Cited by: 15
Author(s): Rosita Russo, Valentina Vassallo, Antonietta Stellavato, Mariangela Valletta, Donatella Cimini, Paolo V. Pedone, Chiara Schiraldi, Angela Chambery
Software Mentions: 3
Published: over 4 years ago

10.1186/bcr3672

A genomic analysis of mouse models of breast cancer reveals molecular features ofmouse models and relationships to human breast cancer
Cited by: 71
Author(s): Daniel P. Hollern, Eran R. Andrechek
Software Mentions: 3
Published: over 10 years ago

10.1042/BSR20193708

In silico approach to predict pancreatic β-cells classically secreted proteins
Cited by: 1
Author(s): Erika Pinheiro-Machado, Tatiana Orli Milkewitz Sandberg, Celina Pihl, Per Hägglund, Michał Marzec
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.64691

Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors
Cited by: 23
Author(s): Manoj Kumar Rathinaswamy, Zied Gaieb, Kaelin D Fleming, Chiara Borsari, Noah J Harris, Brandon E Moeller, Matthias P. Wymann, Rommie E. Amaro, John E. Burke
Software Mentions: 3
Published: over 3 years ago

10.1155/2018/5206758

Evolution and Expression Divergence of E2 Gene Family under Multiple Abiotic and Phytohormones Stresses inBrassica rapa
Cited by: 8
Author(s): Nadeem Khan, Chunmei Hu, Waleed Amjad Khan, Emal Naseri, Koeun Han, Hansong Dong, Xilin Hou
Software Mentions: 3
Published: about 6 years ago

10.1155/2018/6023457

Genome-Wide Identification, Classification, and Expression Divergence of Glutathione-Transferase Family in Brassica rapa under Multiple Hormone Treatments
Cited by: 18
Author(s): Nadeem Khan, Chunmei Hu, Waleed Amjad Khan, Xilin Hou
Software Mentions: 3
Published: almost 7 years ago

10.1515/jib-2018-0080

Gene Expression Studies to Identify Significant Genes in AR, MTOR, MAPK Pathways and their Overlapping Regulatory Role in Prostate Cancer
Cited by: 0
Author(s): Nimisha Asati, Abhinav Mishra, Ayush Shukla, Tiratha Raj Singh
Software Mentions: 3
Published: over 5 years ago

10.3390/biology9090260

Computational and Transcriptome Analyses Revealed Preferential Induction of Chemotaxis and Lipid Synthesis by SARS-CoV-2
Cited by: 7
Author(s): Hibah Shaath, Nehad M. Alajez
Software Mentions: 3
Published: about 4 years ago

10.6026/97320630013269

Potential Hemoglobin A/F role in clinical Malaria
Cited by: 1
Author(s): Vikky Awasthi, Debprasad Chattopadhyay, Jyoti Das
Software Mentions: 3
Published: about 7 years ago

10.7554/eLife.19466

Origin and evolution of transporter substrate specificity within the NPF family
Cited by: 78
Author(s): Morten Jørgensen, Deyang Xu, Christoph Crocoll, Heidi A. Ernst, David Ramírez, Mohammed Saddik Motawia, Carl Erik Olsen, Osman Mirza, Hussam Hassan Nour-Eldin
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.17243

Human intracranial recordings link suppressed transients rather than 'filling-in' to perceptual continuity across blinks
Cited by: 40
Author(s): Tal Golan, Ido Davidesco, Meir Meshulam, David M. Groppe, Pierre Mégevand, Erin Yeagle, Matthew S Goldfinger, Michal Harel, Lucía Melloni, Charles E. Schroeder, Leon Y. Deouell, Ashesh D. Mehta, Rafael Malach
Software Mentions: 3
Published: about 8 years ago

10.1111/obr.12524

Animal models of maternal high fat diet exposure and effects on metabolism in offspring: a meta-regression analysis
Cited by: 82
Author(s): George Ribaroff, Elizabeth Wastnedge, Amanda J. Drake, Richard M. Sharpe, Thomas K. Chambers
Software Mentions: 3
Published: over 7 years ago

10.1155/2018/5912194

Pyroptosis of MCF7 Cells Induced by the Secreted Factors of hUCMSCs
Cited by: 16
Author(s): Yang Jiao, Hang Zhao, Guodong Chen, Xiongbo Sang, Luhan Yang, Zhen Hou, Wei Si, Bingrong Zheng
Software Mentions: 3
Published: about 6 years ago

10.1155/2021/2807236

Research on the Undulatory Motion Mechanism of Seahorse Based on Dynamic Mesh
Cited by: 3
Author(s): Xinyu Quan, Ximing Zhao, Shijie Zhang, Jie Zhou, Nan Yu, Xuyan Hou
Software Mentions: 3
Published: about 3 years ago

10.1186/s13102-021-00318-9

Incidence, severity and perceived susceptibility of COVID-19 in the UK CrossFit population
Cited by: 5
Author(s): Athalie Redwood‐Brown, Grant W. Ralston, Jennifer Wilson
Software Mentions: 3
Published: about 3 years ago

10.1038/srep34315

Unravelling molecular mechanisms from floral initiation to lipid biosynthesis in a promising biofuel tree species, Pongamia pinnata using transcriptome analysis
Cited by: 21
Author(s): Rachapudi Venkata Sreeharsha, Shalini Mudalkar, Kambam Tamna Singha, A. Ramachandra Reddy
Software Mentions: 3
Published: about 8 years ago

10.1038/srep41328

PrimerSuite: A High-Throughput Web-Based Primer Design Program for Multiplex Bisulfite PCR
Cited by: 32
Author(s): Jennifer Lu, Andrew D. Johnston, Philippe Berichon, Kelin Ru, Darren Korbie, Matt Trau
Software Mentions: 3
Published: almost 8 years ago

10.1038/srep20795

Effects of TRP channel agonist ingestion on metabolism and autonomic nervous system in a randomized clinical trial of healthy subjects
Cited by: 28
Author(s): Stéphanie Michlig, Jenny Meylan Merlini, Maurice Beaumont, Mirko Ledda, Aude Tavenard, Rajat Mukherjee, Susana Camacho, Johannes le Coutre
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12885-015-1337-3

Transcriptional changes associated with resistance to inhibitors of epidermal growth factor receptor revealed using metaanalysis
Cited by: 3
Author(s): Sidra Younis, Qamar Javed, Miroslav Blumenberg
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.ppat.1008803

Closely related reovirus lab strains induce opposite expression of RIG-I/IFN-dependent versus -independent host genes, via mechanisms of slow replication versus polymorphisms in dsRNA binding σ3 respectively
Cited by: 17
Author(s): Adil Mohamed, Prathyusha Konda, Heather E. Eaton, Shashi Gujar, James R. Smiley, Maya Shmulevitz
Software Mentions: 3
Published: about 4 years ago

10.1186/s12870-021-02919-5

Superoxide dismutase (SOD) as a selection criterion for triticale grain yield under drought stress: a comprehensive study on genomics and expression profiling, bioinformatics, heritability, and phenotypic variability
Cited by: 39
Author(s): Armin Saed-Moucheshi, Fatemeh Sohrabi, Elham Fasihfar, Fatemeh Baniasadi, Mehrnaz Riasat, Ali-Akbar Mozafari
Software Mentions: 3
Published: over 3 years ago

10.3762/bjnano.8.101

Needs and challenges for assessing the environmental impacts of engineered nanomaterials (ENMs)
Cited by: 34
Author(s): Michelle Romero-Franco, Hilary Godwin, Muhammad Bilal, Yoram Cohen
Software Mentions: 3
Published: over 7 years ago

10.1186/s13002-021-00432-5

What interferes with conducting free lists? A comparative ethnobotanical experiment
Cited by: 4
Author(s): Melise Pessôa Araujo Meireles, Ulysses Paulino Albuquerque, Patrícia Muniz de Medeiros
Software Mentions: 3
Published: almost 4 years ago

10.3390/genes12071081

Nuclear Organization during Hepatogenesis in Zebrafish Requires Uhrf1
Cited by: 3
Author(s): Bhavani P. Madakashira, Chi Zhang, Filippo Macchi, Elena Magnani, Kirsten C. Sadler
Software Mentions: 3
Published: over 3 years ago

10.3389/fpsyg.2019.02007

Primes and Consequences: A Systematic Review of Meritocracy in Intergroup Relations
Cited by: 22
Author(s): Andreia Madeira, Rui Costa-Lopes, John F. Dovidio, Gonçalo Freitas, Mafalda F. Mascarenhas
Software Mentions: 3
Published: about 5 years ago

10.1186/s12711-021-00664-9

A genome-wide scan to identify signatures of selection in two Iranian indigenous chicken ecotypes
Cited by: 14
Author(s): Elaheh Rostamzadeh Mahdabi, Ali Esmailizadeh, Ahmad Ayatollahi Mehrgardi, Masood Asadi Fozi
Software Mentions: 3
Published: about 3 years ago

10.3389/fpls.2020.602313

Rapid and Detailed Characterization of Transgene Insertion Sites in Genetically Modified Plants via Nanopore Sequencing
Cited by: 7
Author(s): Paula Andrea Giraldo, Hiroshi Shinozuka, Germán Spangenberg, K. F. Smith, Noel O. I. Cogan
Software Mentions: 3
Published: almost 4 years ago

10.3389/fnins.2019.01037

Clustering the Brain With “CluB”: A New Toolbox for Quantitative Meta-Analysis of Neuroimaging Data
Cited by: 6
Author(s): Manuela Berlingeri, Francantonio Devoto, Francesca Gasparini, Aurora Saibene, Silvia Corchs, Lucia Clemente, L Danelli, Marcello Gallucci, Riccardo Borgoni, N. Alberto Borghese, Eraldo Paulesu
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2018.00717

An Immortalized Genetic Mapping Population for Perennial Ryegrass: A Resource for Phenotyping and Complex Trait Mapping
Cited by: 4
Author(s): Janaki Velmurugan, Dan Milbourne, V. Connolly, J. Heslop‐Harrison, Ulrike C. M. Anhalt, M.B. Lynch, Susanne Barth
Software Mentions: 3
Published: over 6 years ago

10.1186/s13059-021-02342-x

nPhase: an accurate and contiguous phasing method for polyploids
Cited by: 14
Author(s): Omar Abou Saada, Andreas Tsouris, Chris Eberlein, Anne Friedrich, Joseph Schacherer
Software Mentions: 3
Published: over 3 years ago

10.1186/s12885-019-5801-3

A new pragmatic design for dose escalation in phase 1 clinical trials using an adaptive continual reassessment method
Cited by: 20
Author(s): Bernard V. North, Hemant M. Kocher, Peter Sasieni
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2407-8-107

Two-dimensional electrophoretic comparison of metastatic and non-metastatic human breast tumors using in vitrocultured epithelial cells derived from the cancer tissues
Cited by: 19
Author(s): Jan Vydra, Irena Selicharová, Kateřina Smutná, Miloslav Šanda, Eva Matoušková, Eva Buršíková, Markéta Prchalová, Z Velenská, David Coufal, Jiřı́ Jiráček
Software Mentions: 3
Published: over 16 years ago

10.3389/fmicb.2018.01926

Endophytic Bacterial Community Structure and Function of Herbaceous Plants From Petroleum Hydrocarbon Contaminated and Non-contaminated Sites
Cited by: 20
Author(s): Rhea Lumactud, Roberta R. Fulthorpe
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2020.579929

Population Genetic Analysis of the Theileria annulata Parasites Identified Limited Diversity and Multiplicity of Infection in the Vaccine From India
Cited by: 12
Author(s): Sonti Roy, Vasundhra Bhandari, Madhumanti Barman, Pankaj Kumar, Vandna Bhanot, Jaspreet Singh Arora, Sanjeev Singh, Paresh Sharma
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2018.01074

Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities
Cited by: 83
Author(s): Vanessa Nessner Kavamura, Rifat Hayat, Ian M. Clark, Maike Rossmann, Rodrigo Mendes, P. R. Hirsch, Tim H. Mauchline
Software Mentions: 3
Published: over 6 years ago

10.1186/s12865-019-0294-z

Immunoglobulin G responses against falciparum malaria specific antigens are higher in children with homozygous sickle cell trait than those with normal hemoglobin
Cited by: 4
Author(s): George M. Bwire, Mtebe Majigo, Robert Makalla, Lillian Nkinda, Akili Mawazo, Mucho Mizinduko, Julie Makani
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-019-2624-9

Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions
Cited by: 4
Author(s): Norbert Bokros, S. Popescu, George V. Popescu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12913-020-05929-5

Change and improvement 50 years in the making: a scoping review of the use of soft systems methodology in healthcare
Cited by: 9
Author(s): Hanna Augustsson, Kate Churruca, Jeffrey Braithwaite
Software Mentions: 3
Published: almost 4 years ago

10.1186/1471-2105-12-13

A Platform for Processing Expression of Short Time Series (PESTS)
Cited by: 16
Author(s): Ayan Sinha, Marianthi Markatou
Software Mentions: 3
Published: almost 14 years ago

10.12688/f1000research.14488.3

Missing the point: are journals using the ideal number of decimal places?
Cited by: 0
Author(s): Adrian Barnett
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-015-0860-1

Treelink: data integration, clustering and visualization of phylogenetic trees
Cited by: 9
Author(s): Christian Allende, Erik Sohn, Cedric Little
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0223313

The impact of leishmaniasis on mental health and psychosocial well-being: A systematic review
Cited by: 37
Author(s): Malini Pires, Barry Wright, Paul M. Kaye, Virgínia da Conceição, Rachel Churchill
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0235385

A scientometric analysis of birth cohorts in South Asia: Way forward for Pakistan
Cited by: 4
Author(s): Ahmed Waqas, Shamsa Zafar, Deborah A Lawlor, John Wright, Assad Hafeez, Irshad Ahmad, Siham Sikander, Atıf Rahman
Software Mentions: 3
Published: over 4 years ago

10.1038/s41418-018-0101-z

The mitochondrial citrate carrier, SLC25A1, drives stemness and therapy resistance in non-small cell lung cancer
Cited by: 75
Author(s): Harvey R. Fernandez, Shreyas M Gadre, Mingjun Tan, Garrett T. Graham, Rami Mosaoa, Martin S Ongkeko, Kyu Ah Kim, Rebecca B. Riggins, Erika Parasido, Iacopo Petrini, Stefania Pacini, Amrita K. Cheema, Rency S. Varghese, Habtom W. Ressom, Kun Zhang, Christopher Albanese, Aykut Üren, Mikell Paige, Giuseppe Giaccone, Maria Laura Avantaggiati
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0006826

Comprehensive mRNA Expression Profiling Distinguishes Tauopathies and Identifies Shared Molecular Pathways
Cited by: 35
Author(s): Iraad F. Bronner, Zoltán Bochdanovits, Patrizia Rizzu, Wouter Kamphorst, Rivka Ravid, John van Swieten, Peter Heutink
Software Mentions: 3
Published: about 15 years ago

10.1371/journal.pone.0222651

Analyzing data from the digital healthcare exchange platform for surveillance of antibiotic prescriptions in primary care in urban Kenya: A mixed-methods study
Cited by: 13
Author(s): Legese A. Mekuria, Tobias F. De Rinke Wit, Nicole Spieker, Ramona Koech, Robert Nyarango, Stanley Ndwiga, Christine Fenenga, Alice Ogink, Constance Schultsz, Anja van’t Hoog
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0221826

Genome wide genetic dissection of wheat quality and yield related traits and their relationship with grain shape and size traits in an elite × non-adapted bread wheat cross
Cited by: 36
Author(s): Ajay Kumar, Éder Eduardo Mantovani, Şenay Şimşek, Shalu Jain, Elias M. Elias, Maryati Mohamed
Software Mentions: 3
Published: about 5 years ago

10.1186/1471-2164-12-593

A co-ordinated interaction between CTCF and ER in breast cancer cells
Cited by: 56
Author(s): Caryn S. Ross-Innes, Gordon D. Brown, Jason S. Carroll
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0138297

EEGNET: An Open Source Tool for Analyzing and Visualizing M/EEG Connectome
Cited by: 62
Author(s): Mahmoud Hassan, Mohamad Shamas, Mohamad Khalil, Wassim El Falou, Fabrice Wendling
Software Mentions: 3
Published: about 9 years ago

10.1186/s12859-016-1139-x

CerealsDB 3.0: expansion of resources and data integration
Cited by: 38
Author(s): Paul Wilkinson, Mark Winfield, Gary Barker, Simon Tyrrell, Xingdong Bian, Alexandra M. Allen, Amanda Burridge, Jane A. Coghill, Christy Waterfall, Mario Cáccamo, Robert P. Davey, Keith J. Edwards
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0245687

The Epidemiology of first and second-line drug-resistance Mycobacterium tuberculosis complex common species: Evidence from selected TB treatment initiating centers in Ethiopia
Cited by: 11
Author(s): Biniyam Dagne, Kassu Desta, Rahel Fekade, Misikir Amare, Mekonnen Tadesse, Getu Diriba, Betselot Zerihun, Melak Getu, Waganeh Sinshaw, Getachew Seid, Dinka Fekadu Gamtesa, Gebeyehu Assefa, Ayinalem Alemu
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0027816

Proteomic Signatures of Human Oral Epithelial Cells in HIV-Infected Subjects
Cited by: 23
Author(s): Elizabeth Yohannes, Santosh K. Ghosh, Bin Jiang, Thomas S. McCormick, Aaron Weinberg, Edward M. Hill, Faddy Faddoul, Mark R. Chance
Software Mentions: 3
Published: about 13 years ago

10.1371/journal.pone.0232644

TargetDB: A target information aggregation tool and tractability predictor
Cited by: 9
Author(s): Stéphane De Cesco, John B. Davis, P.E. Brennan
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0066701

Filling the Knowledge Gap: Measuring HIV Prevalence and Risk Factors among Men Who Have Sex with Men and Female Sex Workers in Tripoli, Libya
Cited by: 30
Author(s): Joseph J. Valadez, Sima Berendes, Caroline Jeffery, Joanna Thomson, Hussain Ben Othman, León Danon, Abdullah A. Turki, Rabea Saffialden, Lusine Mirzoyan
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0161907

Cerebral Autoregulation Real-Time Monitoring
Cited by: 8
Author(s): Adi Tsalach, Eliahu Ratner, Stas Lokshin, Zmira Silman, Ilan Breskin, Nahum Budin, Moshe Kamar
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-019-6332-7

SMaSH: Sample matching using SNPs in humans
Cited by: 7
Author(s): Maximillian S. Westphal, David Frankhouser, Carmine M. Sonzone, Peter G. Shields, Pearlly S. Yan, Ralf Bundschuh
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-015-2215-8

Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation
Cited by: 13
Author(s): Alexandra Tallafuß, Meghan W. Kelly, Dan Gibson, Peter Batzel, Kate V. Karfilis, Jonathan A. Eisen, Kryn Stankunas, John H. Postlethwait, Philip Washbourne
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0245023

Effect of high-intensity interval training on metabolic parameters in women with polycystic ovary syndrome: A systematic review and meta-analysis of randomized controlled trials
Cited by: 15
Author(s): Ivanaldo Santos, Fernando Antônio Santana de Souza Nunes, Victor Sabino de Queiros, Ricardo Ney Cobucci, Pedro Brüch Dantas, Gustavo Mafaldo Soares, Breno Guilherme de Araújo Tinôco Cabral, Técia Maria de Oliveira Maranhão, Paulo Moreira Silva Dantas
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0159177

Immunophenotypic and Ultrastructural Analysis of Mast Cells in Hermansky-Pudlak Syndrome Type-1: A Possible Connection to Pulmonary Fibrosis
Cited by: 11
Author(s): Arnold S. Kirshenbaum, Glenn Cruse, Avanti Desai, Geethani Bandara, Maarten Leerkes, Chyi‐Chia Richard Lee, Elizabeth R. Fischer, Kevin O’Brien, Bernadette R. Gochuico, Kelly D. Stone, William A. Gahl, Dean D. Metcalfe
Software Mentions: 3
Published: over 8 years ago

10.3389/fphar.2021.657486

Caspase-11-Gasdermin D-Mediated Pyroptosis Is Involved in the Pathogenesis of Atherosclerosis
Cited by: 34
Author(s): Mengqing Jiang, Xuejing Sun, Suzhen Liu, Tao Yan, Yunming Shi, Yuanyuan Bai, Yujie Wang, Qiong Yang, Qize Yang, Weihong Jiang, Hong Yuan, Qixia Jiang, Jingjing Cai
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0249877

Comprehensive approach to HIV/AIDS testing and linkage to treatment among men who have sex with men in Curitiba, Brazil
Cited by: 2
Author(s): Marly Marques da Cruz, Vanda Lúcia Cota, Nena Lentini, Trista Bingham, Gregory Parent, Solange Kanso, Liza Regina Bueno Rosso, Bernardo Machado De Almeida, Raquel Maria Cardoso Torres, Cristiane Yumi Nakamura, Ana Carolina Faria e Silva Santelli
Software Mentions: 3
Published: over 3 years ago

Projects: pypi: excel

Papers Mentioning excel 2,995