pypi: environment | Projects | Ecosyste.ms: Papers

10.1186/s12859-020-03845-3

Validation of a yellow fever vaccine model using data from primary vaccination in children and adults, re-vaccination and dose-response in adults and studies with immunocompromised individuals
Cited by: 3
Author(s): Carla Rezende Barbosa Bonin, Guilherme Côrtes Fernandes, Reinaldo de Menezes Martins, Luiz Antônio Bastos Camacho, Andréa Teixeira-Carvalho, Lícia Maria Henrique da Mota, Sheila Maria Barbosa de Lima, Ana Carolina Campi-Azevedo, Olindo Assis Martins‐Filho, Rodrigo Weber dos Santos, Marcelo Lobosco
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-79082-8

Human extrahepatic and intrahepatic cholangiocyte organoids show region-specific differentiation potential and model cystic fibrosis-related bile duct disease
Cited by: 37
Author(s): Monique M A Verstegen, Floris J.M. Roos, Ksenia Burka, Helmuth Gehart, Myrthe Jager, Maaike de Wolf, Marcel J. C. Bijvelds, Hugo R. de Jonge, Arif Ibrahim Ardisasmita, Nick A. van Huizen, Henk P. Roest, Jeroen de Jonge, Michael Koch, Francesco Pampaloni, Sabine A. Fuchs, Imre F. Schene, Theo M. Luider, Hubert P.J. van der Doef, Frank Bodewes, Ruben H J de Kleine, Bart Spee, Gert‐Jan Kremers, Hans Clevers, Jan N. M. IJzermans, Edwin Cuppen, Luc J. W. van der Laan
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0090178

An Integrative Analysis of the Dynamics of Landscape- and Local-Scale Colonization of Mediterranean Woodlands by Pinus halepensis
Cited by: 10
Author(s): Efrat Sheffer, Charles D. Canham, Jaime Kigel, Avi Perevolotsky
Software Mentions: 3
Published: over 10 years ago

10.1186/1471-2105-14-18

JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison
Cited by: 9
Author(s): Phillip Seitzer, Tu Anh Ngoc Huynh, Marc T. Facciotti
Software Mentions: 3
Published: almost 12 years ago

10.1186/1471-2105-10-50

EMMA 2 – A MAGE-compliant system for the collaborative analysis and integration of microarray data
Cited by: 66
Author(s): Michael Dondrup, Stefan P. Albaum, Thasso Griebel, Kolja Henckel, Sebastian Jünemann, Tim Kahlke, Christiane Katja Kleindt, H. Küster, Burkhard Linke, Dominik Mertens, Virginie Mittard-Runte, Heiko Neuweger, Kai J. Runte, Andreas Tauch, Felix Tille, Alfred Pühler, Alexander Goesmann
Software Mentions: 3
Published: almost 16 years ago

10.1186/1752-0509-4-124

Molecular mechanistic associations of human diseases
Cited by: 11
Author(s): Philip Stegmaier, Mathias Krull, Nico Voss, Alexander Kel, Edgar Wingender
Software Mentions: 3
Published: about 14 years ago

10.1038/s41598-018-32020-1

Structural robustness of mammalian transcription factor networks reveals plasticity across development
Cited by: 3
Author(s): José Luis Caldú-Primo, Elena Álvarez-Buylla, José Dávila-Velderrain
Software Mentions: 3
Published: about 6 years ago

10.1186/1471-2458-13-455

Baseline predictors of treatment outcome in Internet-based alcohol interventions: a recursive partitioning analysis alongside a randomized trial
Cited by: 12
Author(s): Matthijs Blankers, Maarten W. J. Koeter, Gerard M. Schippers
Software Mentions: 3
Published: over 11 years ago

10.1002/ajhb.22825

Disentangling the associations between parental BMI and offspring body composition using the four‐component model
Cited by: 9
Author(s): Delan Devakumar, Carlos Grijalva-Eternod, Mario Cortina‐Borja, Jane Williams, Mary Fewtrell, Jonathan C. K. Wells
Software Mentions: 3
Published: almost 9 years ago

10.3390/s141122039

IoT-Based User-Driven Service Modeling Environment for a Smart Space Management System
Cited by: 19
Author(s): Hoan-Suk Choi, Woo-Seop Rhee
Software Mentions: 3
Published: about 10 years ago

10.1186/1471-2229-14-185

Genome-wide analysis reveals divergent patterns of gene expression during zygotic and somatic embryo maturation of Theobroma cacaoL., the chocolate tree
Cited by: 25
Author(s): Siela N. Maximova, Sergio Florez, Xiangling Shen, Nicolas Niemenak, Yufan Zhang, Wayne R. Curtis, Mark J. Guiltinan
Software Mentions: 3
Published: over 10 years ago

10.1107/S2059798320014114

The low-cost Shifter microscope stage transforms the speed and robustness of protein crystal harvesting
Cited by: 13
Author(s): Nathan Wright, P. Collins, L. Koekemoer, T. Krojer, R. Talon, Elliot R Nelson, Mingda Ye, Radosław P. Nowak, Joseph Newman, Jia Tsing Ng, Nick Mitrovich, Helton Wiggers, F. von Delft
Software Mentions: 3
Published: almost 4 years ago

10.3390/cancers13030439

Retrospective Validation of a 168-Gene Expression Signature for Glioma Classification on a Single Molecule Counting Platform
Cited by: 4
Author(s): Paul Tran, Lynn Tran, Khaled Bin Satter, Sharad Purohit, John Nechtman, Diane Hopkins, Bruno dos Santos, Roni J. Bollag, Ravindra Kolhe, Suash Sharma, Jin‐Xiong She
Software Mentions: 3
Published: almost 4 years ago

10.1007/s11306-014-0727-x

Predicting retention time in hydrophilic interaction liquid chromatography mass spectrometry and its use for peak annotation in metabolomics
Cited by: 76
Author(s): Mingshu Cao, Karl Fraser, Jan Huege, Tom Featonby, Susanne Rasmussen, Chris S. Jones
Software Mentions: 3
Published: about 10 years ago

10.3390/ijms21103621

Computational Simulations to Guide Enzyme-Mediated Prodrug Activation
Cited by: 11
Author(s): Milica Marković, Shimon Ben‐Shabat, Arik Dahan
Software Mentions: 3
Published: over 4 years ago

10.1186/s13578-016-0110-x

Bioinformatic analysis reveals the expression of unique transcriptomic signatures in Zika virus infected human neural stem cells
Cited by: 44
Author(s): Alyssa J. Rolfe, Dale B. Bosco, Jingying Wang, Richard S. Nowakowski, Jianqing Fan, Yi Ren
Software Mentions: 2
Published: over 8 years ago

10.1186/s42523-020-00036-6

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study
Cited by: 10
Author(s): Karen R. Muñana, Megan E. Jacob, Benjamin J. Callahan
Software Mentions: 2
Published: over 4 years ago

10.3390/ani11061786

Cryptosporidium spp. Infections in Combination with Other Enteric Pathogens in the Global Calf Population
Cited by: 4
Author(s): Beate Conrady, Michael Brunauer, Franz-Ferdinand Roch
Software Mentions: 2
Published: over 3 years ago

10.1186/s13613-017-0349-3

The host response in critically ill sepsis patients on statin therapy: a prospective observational study
Cited by: 8
Author(s): Maryse A. Wiewel, Brendon P. Scicluna, Lonneke A. van Vught, Arie J. Hoogendijk, Aeilko H. Zwinderman, René Lutter, Janneke Horn, Olaf L. Cremer, Marc J. M. Bonten, Marcus J. Schultz, Tom van der Poll
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13613-021-00930-5

Association between delay in intensive care unit admission and the host response in patients with community-acquired pneumonia
Cited by: 6
Author(s): Liza Pereverzeva, Fabrice Uhel, Hessel Peters Sengers, Olaf L. Cremer, Marcus J. Schultz, Marc Bonten, Brendon P. Scicluna, Tom van der Poll
Software Mentions: 2
Published: about 3 years ago

10.1186/1471-2105-6-166

Cited by: 49
Author(s): Mark Reimers, John N. Weinstein
Software Mentions: 2
Published: almost 20 years ago

10.1186/s12859-018-2127-0

AceTree: a major update and case study in the long term maintenance of open-source scientific software
Cited by: 20
Author(s): Braden Katzman, Doris Tang, Anthony Santella, Zhirong Bao
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-8-386

Large scale statistical inference of signaling pathways from RNAi and microarray data
Cited by: 45
Author(s): Holger Froehlich, Mark Fellmann, Holger Sueltmann, Annemarie Poustka, Tim Beißbarth
Software Mentions: 2
Published: about 17 years ago

10.1186/1471-2105-10-272

Correlating gene and protein expression data using Correlated Factor Analysis
Cited by: 15
Author(s): Chuen Seng Tan, Agus Salim, Alexander Ploner, Janne Lehtiö, Kee Seng Chia, Yudi Pawitan
Software Mentions: 2
Published: about 15 years ago

10.1186/1472-6750-10-47

Optimization and analysis of a quantitative real-time PCR-based technique to determine microRNA expression in formalin-fixed paraffin-embedded samples
Cited by: 40
Author(s): Rashmi S. Goswami, Levi Waldron, Jerry Machado, Nilva K. Cervigne, Wei Xu, Patrícia P. Reis, Denis Bailey, Igor Jurišica, Michael Crump, Suzanne Kamel‐Reid
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2407-10-640

Evaluation of FTIR Spectroscopy as a diagnostic tool for lung cancer using sputum
Cited by: 156
Author(s): Paul D. Lewis, Keir Lewis, Robin Ghosal, Sion C. Bayliss, Amanda J. Lloyd, John W. Wills, A. Ruth Godfrey, P. Kloer, Luis A. J. Mur
Software Mentions: 2
Published: about 14 years ago

10.1186/s12898-014-0030-8

Coexistence mechanisms at multiple scales in mosquito assemblages
Cited by: 23
Author(s): Gabriel Zorello Laporta, Maria Anice Mureb Sallum
Software Mentions: 2
Published: about 10 years ago

10.1186/s12862-014-0164-5

Impact of thermal stress on evolutionary trajectories of pathogen resistance in three-spined stickleback (Gasterosteus aculeatus)
Cited by: 27
Author(s): Franziska Schade, Lisa N S Shama, K. Mathias Wegner
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-016-3463-y

Transcriptomic evidence for the control of soybean root isoflavonoid content by regulation of overlapping phenylpropanoid pathways
Cited by: 15
Author(s): Mehran Dastmalchi, Patrick Chapman, Jaeju Yu, Ryan E Austin, Sangeeta Dhaubhadel
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12916-017-0881-x

Detection of antibiotic resistance is essential for gonorrhoea point-of-care testing: a mathematical modelling study
Cited by: 28
Author(s): Stephanie M Fingerhuth, Nicola Low, Sebastian Bonhoeffer, Christian L. Althaus
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2202-12-S1-O17

Slow integration leads to persistent action potential firing in distal axons of coupled interneurons
Cited by: 3
Author(s): Mark Sheffield, Tyler K. Best, Brett D. Mensh, William L. Kath, Nelson Spruston
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2229-10-14

SoyDB: a knowledge database of soybean transcription factors
Cited by: 105
Author(s): Zheng Wang, Marc Libault, Trupti Joshi, Babu Valliyodan, Henry T. Nguyen, Dong Xu, Gary Stacey, Jianlin Cheng
Software Mentions: 2
Published: almost 15 years ago

10.1186/1471-2229-8-32

Spatial distribution of transcript changes in the maize primary root elongation zone at low water potential
Cited by: 92
Author(s): William G. Spollen, Wen-Jing Tao, Babu Valliyodan, Kegui Chen, Lindsey G. Hejlek, Jong-Joo Kim, Mary E. LeNoble, Jinming Zhu, Hans J. Bohnert, David A. Henderson, Daniel P. Schachtman, Georgia Davis, Gordon K. Springer, Robert E. Sharp, Henry T. Nguyen
Software Mentions: 2
Published: over 16 years ago

10.1186/s12889-020-09582-9

Health status of female Moldovan migrants to Italy by health literacy level and age group: a descriptive study
Cited by: 5
Author(s): Francesca Alice Vianello, Federica Zaccagnini, Carlo Pinato, Pietro Maculan, Alessandra Buja
Software Mentions: 2
Published: about 4 years ago

10.1186/s12889-016-2846-y

Midlife work ability and mobility limitation in old age among non-disability and disability retirees - a prospective study
Cited by: 15
Author(s): Monika E. von Bonsdorff, Taina Rantanen, Timo Törmäkangas, Jenni Kulmala, Timo Hinrichs, Jorma Seitsamo, Clas‐Håkan Nygård, Juhani Ilmarinen, Mikaela B. von Bonsdorff
Software Mentions: 2
Published: almost 9 years ago

10.1136/bmjdrc-2020-001441

Metabolic recovery after weight loss surgery is reflected in serum microRNAs
Cited by: 15
Author(s): Susana Sangiao‐Alvarellos, Konstantinos Theofilatos, Temo Barwari, Clemens Gutmann, Kaloyan Takov, Bhawana Singh, Paula Juiz-Valiña, Bárbara María Varela-Rodriguez, Elena Outeiriño-Blanco, Elisa Duregotti, Anna Zampetaki, Lukas Lunger, Christoph Ebenbichler, Herbert Tilg, María Jesús García-Brao, Peter Willeit, Enrique Mena, Stefan Kiechl, Fernando Cordido, Manuel Mayr
Software Mentions: 2
Published: about 4 years ago

10.3758/s13428-020-01444-x

Sensor-based proximity metrics for team research. A validation study across three organizational contexts
Cited by: 2
Author(s): Jörg Müller, Julio Meneses, Anne Laure Humbert, Elisabeth Guenther
Software Mentions: 2
Published: over 4 years ago

10.1242/bio.035196

Epigenetic modifications by polyphenolic compounds alter gene expression in the hippocampus
Cited by: 13
Author(s): Tal Frolinger, Francis Herman, Abhijeet Sharma, Steven Sims, Jun Wang, Giulio Maria Pasinetti
Software Mentions: 2
Published: almost 7 years ago

10.1007/s10544-019-0406-9

POISED-5, a portable on-board electrochemical impedance spectroscopy biomarker analysis device
Cited by: 9
Author(s): M. Anne Sawhney, R. Steven Conlan
Software Mentions: 2
Published: over 5 years ago

10.1093/brain/awx094

ATAD3 gene cluster deletions cause cerebellar dysfunction associated with altered mitochondrial DNA and cholesterol metabolism
Cited by: 98
Author(s): Rajesh K. Desai, Ann E. Frazier, Romina Durigon, Harshil Patel, Aleck W.E. Jones, Ilaria Dalla Rosa, Nicole J. Lake, Alison G. Compton, Hayley S. Mountford, Elena J. Tucker, Alice Mitchell, Deborah J. Jackson, Abdul Karim Sesay, Miriam Di Re, Lambert P. van den Heuvel, Derek Burke, David Francis, Sebastian Lunke, George McGillivray, Simone Mandelstam, Fanny Mochel, Boris Keren, Claude Jardel, Anne Turner, Peter Ian Andrews, Jan A.M. Smeitink, Johannes N. Spelbrink, Simon Heales, Masakazu Kohda, Akira Ohtake, Kei Murayama, Yasushi Okazaki, Anne Lombès, Ian Holt, David R. Thorburn, Antonella Spinazzola
Software Mentions: 2
Published: over 7 years ago

10.1007/s10552-020-01366-1

Bladder cancer stage and mortality: urban vs. rural residency
Cited by: 8
Author(s): Marina Deuker, Lara Franziska Stolzenbach, Claudia Collà Ruvolo, Luigi Nocera, Zhe Tian, Frederik C. Roos, Andreas Becker, Luis A. Kluth, Derya Tilki, Shahrokh F. Shariat, Fred Saad, Felix K.‐H. Chun, Pierre I. Karakiewicz
Software Mentions: 2
Published: about 4 years ago

10.1016/j.ccell.2017.08.001

Increased Vascular Permeability in the Bone Marrow Microenvironment Contributes to Disease Progression and Drug Response in Acute Myeloid Leukemia
Cited by: 163
Author(s): Diana Passaro, Alessandro Di Tullio, Ander Abarrategi, Kevin Rouault-Pierre, Katherine T. Foster, Linda Ariza‐McNaughton, Beatriz Montaner, Probir Chakravarty, Leena Bhaw, Giovanni Diana, François Lassailly, John G. Gribben, Dominique Bonnet
Software Mentions: 2
Published: about 7 years ago

10.1007/s10985-018-9423-x

The wild bootstrap for multivariate Nelson–Aalen estimators
Cited by: 11
Author(s): Tobias Bluhmki, Dennis Dobler, Jan Beyersmann, Markus Pauly
Software Mentions: 2
Published: over 6 years ago

10.1155/2018/6808934

RIG-I Signaling via MAVS Is Dispensable for Survival in Lethal Influenza Infection <i>In Vivo</i>
Cited by: 10
Author(s): Wenxin Wu, Xiaoqiu Wang, Wei Zhang, Lili Tian, J. Leland Booth, Elizabeth S. Duggan, Sunil S. More, Lin Liu, Mikhail G. Dozmorov, Jordan P. Metcalf
Software Mentions: 2
Published: about 6 years ago

10.3390/medsci6010023

Network-Based Identification of Altered Stem Cell Pluripotency and Calcium Signaling Pathways in Metastatic Melanoma
Cited by: 8
Author(s): Ben Hur Neves de Oliveira, Carla Dalmaz, Fares Zeidán-Chuliá
Software Mentions: 2
Published: over 6 years ago

10.3390/metabo11080542

A Mediation Approach to Discovering Causal Relationships between the Metabolome and DNA Methylation in Type 1 Diabetes
Cited by: 1
Author(s): Tim Vigers, Lauren A. Vanderlinden, Randi K. Johnson, Patrick M. Carry, Ivana V. Yang, Brian C. DeFelice, Alexander Kaizer, Laura Pyle, Marian Rewers, Oliver Fiehn, Jill M. Norris, Katerina Kechris
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms8111829

Behind Taxonomic Variability: The Functional Redundancy in the Tick Microbiome
Cited by: 24
Author(s): Agustı́n Estrada-Peña, Alejandro Cabezas‐Cruz, Dasiel Obregón
Software Mentions: 2
Published: about 4 years ago

10.1074/mcp.TIR118.001131

MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides
Cited by: 87
Author(s): Christoph Wichmann, Florian Meier, Sebastian Virreira Winter, Andreas-David Brunner, Jürgen Cox, Matthias Mann
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules26030737

Molecular Structure, In Vitro Anticancer Study and Molecular Docking of New Phosphate Derivatives of Betulin
Cited by: 13
Author(s): Elwira Chrobak, Maria Jastrzębska, Ewa Bębenek, Monika Kadela-Tomanek, Krzysztof Marciniec, Małgorzata Latocha, R. Wrzalik, Joachim Kusz, Stanisław Boryczka
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40248-019-0168-5

Predictive factors for exacerbation and re-exacerbation in chronic obstructive pulmonary disease: an extension of the Cox model to analyze data from the Swiss COPD cohort
Cited by: 10
Author(s): Pascal Urwyler, Nebal Abu Hussein, Pierre Olivier Bridevaux, Prashant N. Chhajed, Thomas Geiser, Peter Grendelmeier, Ladina Joos Zellweger, Malcolm Kohler, Sabrina Maier, David Malka, Michael Tamm, Robert Thurnheer, Thomas Dieterle, Joerg D. Leuppi
Software Mentions: 2
Published: almost 6 years ago

10.3897/zookeys.1043.68316

Two species? – Limits of the species concepts in the pygmy grasshoppers of the Tetrix bipunctata complex (Orthoptera, Tetrigidae)
Cited by: 1
Author(s): Valentin Moser, Hannes Baur, Arne W. Lehmann, Gerlind U. C. Lehmann
Software Mentions: 2
Published: over 3 years ago

10.1186/s13071-017-2280-8

Epidemiology of taeniosis/cysticercosis in Europe, a systematic review: Western Europe
Cited by: 61
Author(s): Minerva Laranjo‐González, Brecht Devleesschauwer, Chiara Trevisan, Alberto Allepuz, Smaragda Sotiraki, Annette Abraham, Mariana Boaventura Afonso, Joachim Blocher, Luı́s Cardoso, José Manuel Correia da Costa, Pierre Dorny, Sarah Gabriël, Jacinto Gomes, María Ángeles Gómez Morales, Pikka Jokelainen, Miriam Kaminski, B. Krt, Pascal Magnussen, Lucy J. Robertson, Veronika Schmidt, Erich Schmutzhard, G. Suzanne A. Smit, Barbara Šoba, Christen Rune Stensvold, Jože Starič, Karin Troell, Aleksandra Vergles Rataj, Madalena Vieira-Pinto, Manuela Vilhena, Nicola A. Wardrop, Andrea Sylvia Winkler, Véronique Dermauw
Software Mentions: 2
Published: over 7 years ago

10.1186/1756-3305-7-395

Molecular characterization of flaviviruses from field-collected mosquitoes in northwestern Italy, 2011–2012
Cited by: 27
Author(s): F. Rizzo, Francesco Cerutti, Marco Ballardini, Andrea Mosca, Nicoletta Vitale, Maria Cristina Radaelli, Rosanna Desiato, Marino Prearo, Alessandra Pautasso, Cristina Casalone, Pier Luigi Acutis, Simone Peletto, Maria Lucia Mandola
Software Mentions: 2
Published: about 10 years ago

10.1186/s13071-020-04167-2

Dynamic proteomic analysis of Aedes aegypti Aag-2 cells infected with Mayaro virus
Cited by: 8
Author(s): Anna Fernanda Vasconcellos, Samuel Coelho Mandacaru, A. S. de Oliveira, Wagner Fontes, Reynaldo Magalhães Melo, Marcelo Valle de Sousa, Renato O. Resende, Sébastien Charneau
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj.67

Whose name is it anyway? Varying patterns of possessive usage in eponymous neurodegenerative diseases
Cited by: 13
Author(s): Michael R. MacAskill, Tim Anderson
Software Mentions: 2
Published: over 11 years ago

10.1007/s40037-018-0478-x

Analysis of question text properties for equality monitoring
Cited by: 2
Author(s): Daniel Zahra, Steven Burr
Software Mentions: 2
Published: about 6 years ago

10.1111/plb.12730

The pattern of 1-aminocyclopropane-1-carboxylate oxidase induction in the tomato leaf petiole abscission zone is independent of expression of the ribonuclease-LX-encoding LeLX gene
Cited by: 1
Author(s): Marko Chersicola, Aleš Kladnik, Magda Tušek Žnidarič, Amnon Lers, Marina Dermastia
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1003291

miR-199a-5p Is Upregulated during Fibrogenic Response to Tissue Injury and Mediates TGFbeta-Induced Lung Fibroblast Activation by Targeting Caveolin-1
Cited by: 209
Author(s): Christian L. Lino Cardenas, Imène Sarah Hénaoui, Elisabeth Courcot, Christoph Roderburg, Christelle Cauffiez, Sébastien Aubert, Marie‐Christine Copin, B. Wallaert, François Glowacki, Edmone Dewaeles, Jadranka Milošević, Julien Maurizio, John Tedrow, Brice Marcet, Jean-Marc Lo-Guidice, Naftali Kaminski, Pascal Barbry, Tom Luedde, Michaël Perrais, Bernard Mari, Nicolas Pottier
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pntd.0008757

Risk mapping of scrub typhus infections in Qingdao city, China
Cited by: 4
Author(s): Hualei Xin, Peng Fu, Jing Sun, Shengjie Lai, Wenbiao Hu, Archie C. A. Clements, Jianping Sun, Jing Cui, Simon I. Hay, Xiaojing Li, Zhongjie Li
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0046141

Particulate Organic Matter Distribution along the Lower Amazon River: Addressing Aquatic Ecology Concepts Using Fatty Acids
Cited by: 21
Author(s): Jean-Michel Mortillaro, François Rigal, Hervé Rybarczyk, Marcelo Bernardes, Gwénaël Abril, Tarik Méziane
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0237431

Determining levels of cryptic diversity within the endemic frog genera, Indirana and Walkerana, of the Western Ghats, India
Cited by: 5
Author(s): Vijay Ramesh, S. P. Vijayakumar, Trisha Gopalakrishna, Aditi Jayarajan, Kartik Shanker
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0063780

Testing the Utility of an Integrated Analysis of Copy Number and Transcriptomics Datasets for Inferring Gene Regulatory Relationships
Cited by: 3
Author(s): Xin Yi Goh, Richard Newton, Lorenz Wernisch, Rebecca C. Fitzgerald
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0123624

Evolutionary Distance of Amino Acid Sequence Orthologs across Macaque Subspecies: Identifying Candidate Genes for SIV Resistance in Chinese Rhesus Macaques
Cited by: 3
Author(s): Cody T. Ross, Morteza Roodgar, David Glenn Smith
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0023525

OASIS: Online Application for the Survival Analysis of Lifespan Assays Performed in Aging Research
Cited by: 256
Author(s): Jae-Seong Yang, Hyun Jun Nam, Mihwa Seo, Seong Kyu Han, Y. S. Choi, Hong Gil Nam, Seung-Jae Lee, Sanguk Kim
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0239410

Simulation metamodeling approach to complex design of garment assembly lines
Cited by: 3
Author(s): Ocident Bongomin, Josphat Igadwa Mwasiagi, Eric Oyondi Nganyi, Ildephonse Nibikora
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0248884

Sex differences in coronary artery calcium progression: The Korea Initiatives on Coronary Artery Calcification (KOICA) registry
Cited by: 3
Author(s): Won–Jae Lee, Goo-Yeong Cho, Sang Young Cho, Ingyu Hwang, Sun Hwa Kim, Heesun Lee, Hyo Eun Park, Eun Ju Chun, Yong Jin Kim, Seung Young Choi, Sung Hak Park, Hyuk-Soo Han, Jidong Sung, Hae Ok Jung, Hyuk Jae Chang
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0013735

A Pilot Study of Circulating miRNAs as Potential Biomarkers of Early Stage Breast Cancer
Cited by: 349
Author(s): Hua Zhao, Jie Shen, Leonard Medico, Dan Wang, Christine B. Ambrosone, Song Liu
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0180385

Autoimmunity and allergy control in adults submitted to complete thymectomy early in infancy
Cited by: 13
Author(s): Susana L. Silva, Adriana S. Albuquerque, Andreia J. Amaral, Quan Zhen Li, Catarina Mota, Rémi Cheynier, Rui M. M. Victorino, Maria Conceição Pereira-Santos, Ana E. Sousa
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0046454

Reproducibility, Performance, and Clinical Utility of a Genetic Risk Prediction Model for Prostate Cancer in Japanese
Cited by: 30
Author(s): Shusuke Akamatsu, Atsushi Takahashi, Ryo Takata, Michiaki Kubo, Takahiro Inoue, Takashi Morizono, Tatsuhiko Tsunoda, Naoyuki Kamatani, Christopher A. Haiman, Peggy Wan, Gary K. Chen, Loı̈c Le Marchand, Laurence N. Kolonel, Brian E. Henderson, Tomoaki Fujioka, Tomonori Habuchi, Yusuke Nakamura, Osamu Ogawa, Hidewaki Nakagawa
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0199569

Prediction of insect pest distribution as influenced by elevation: Combining field observations and temperature-dependent development models for the coffee stink bug, Antestiopsis thunbergii (Gmelin)
Cited by: 38
Author(s): Abdelmutalab G. A. Azrag, Christian Walter Werner Pirk, Abdullahi Ahmed Yusuf, Fabrice Pinard, Saliou Niassy, Gladys Mosomtai, Régis Babin
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0251909

Development and validation of the facial scale (FaceSed) to evaluate sedation in horses
Cited by: 3
Author(s): Anderson Rodrigues de Oliveira, Miguel Gozalo‐Marcilla, Simone K Ringer, Stijn Schauvliege, Mariana Werneck Fonseca, Pedro Henrique Esteves Trindade, José Nicolau Próspero Puoli Filho, Stélio Pacca Loureiro Luna
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0231713

Carbon metabolic rates and GHG emissions in different wetland types of the Ebro Delta
Cited by: 12
Author(s): Daniel Morant, Antonio Picazo, Carlos Rochera, Anna C. Santamans, Javier Miralles‐Lorenzo, Alba Camacho-Santamans, Carles Ibàñez, Maite Martínez-Eixarch, Antonio Camacho
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0116262

Data Mining Strategies to Improve Multiplex Microbead Immunoassay Tolerance in a Mouse Model of Infectious Diseases
Cited by: 10
Author(s): Akshay Mani, Resmi Ravindran, Soujanya Mannepalli, Daniel P. Vang, Paul A. Luciw, Michael Hogarth, Imran Khan, Viswanathan V Krishnan
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0134752

Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants
Cited by: 25
Author(s): Frank O. Aylward, Lily Khadempour, Daniel M. Tremmel, Bradon R. McDonald, Carrie Nicora, Si Wu, Ronald J. Moore, Daniel J. Orton, Matthew E. Monroe, Paul Piehowski, Samuel O. Purvine, Richard Smith, Mary Lipton, Kristin Burnum-Johnson, Cameron R. Currie
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0065323

Why Even More Clinical Research Studies May Be False: Effect of Asymmetrical Handling of Clinically Unexpected Values
Cited by: 22
Author(s): Matthew Shun-Shin, Dárrel P. Francis
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0035679

Disease Dynamics and Bird Migration—Linking Mallards Anas platyrhynchos and Subtype Diversity of the Influenza A Virus in Time and Space
Cited by: 57
Author(s): Gunnar Gunnarsson, Neus Latorre‐Margalef, Keith A. Hobson, Steven L. Van Wilgenburg, Johan Elmberg, Björn Olsén, Ron A. M. Fouchier, Jonas Waldenström
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0090437

Functional Responses and Resilience of Boreal Forest Ecosystem after Reduction of Deer Density
Cited by: 12
Author(s): Marianne Bachand, Stéphanie Pellerin, Marco Moretti, Isabelle Aubin, Jean‐Pierre Tremblay, Steeve D. Cǒté, Monique Poulin
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0216944

Identification and quantification of defective virus genomes in high throughput sequencing data using DVG-profiler, a novel post-sequence alignment processing algorithm
Cited by: 14
Author(s): Trent J. Bosma, Konstantinos Karagiannis, Luis V. Santana‐Quintero, Natalia A. Ilyushina, Tatiana Zagorodnyaya, Svetlana Petrovskaya, Majid Laassri, Raymond P. Donnelly, Steven A. Rubin, Vahan Simonyan, Christian Sauder
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0006637

Nonlinear Time Series Analysis of Nodulation Factor Induced Calcium Oscillations: Evidence for Deterministic Chaos?
Cited by: 13
Author(s): Saul Hazledine, Jongho Sun, Derin B. Wysham, J. Allan Downie, Giles Oldroyd, Richard J. Morris
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0234732

Elevated galectin-3 in women with gestational diabetes mellitus, a new surrogate for cardiovascular disease in women
Cited by: 12
Author(s): Yeela Talmor‐Barkan, Chava Chezar-Azerrad, Boris Kruchin, Dorit Leshem-Lev, Amos Levi, Eran Hadar, Ran Kornowski, Kinneret Tenenbaum-Gavish, Avital Porter
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0066566

A Unified Proteochemometric Model for Prediction of Inhibition of Cytochrome P450 Isoforms
Cited by: 42
Author(s): Maris Lapins, Apilak Worachartcheewan, Ola Spjuth, Valentin Georgiev, Virapong Prachayasittikul, Chanin Nantasenamat, Jarl E. S. Wikberg
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0100288

Computational Model of Erratic Arrhythmias in a Cardiac Cell Network: The Role of Gap Junctions
Cited by: 12
Author(s): A. Casaleggio, Michael L. Hines, Michele Migliore
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0024146

A New Basal Caniform (Mammalia: Carnivora) from the Middle Eocene of North America and Remarks on the Phylogeny of Early Carnivorans
Cited by: 23
Author(s): Susumu Tomiya
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0085134

Quality Control Methods in Accelerometer Data Processing: Identifying Extreme Counts
Cited by: 27
Author(s): Carly Rich, Marco Geraci, Lucy J Griffiths, Francesco Sera, Carol Dezateux, Mario Cortina‐Borja
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13054-019-2569-4

Quantitative lung ultrasonography: a putative new algorithm for automatic detection and quantification of B-lines
Cited by: 74
Author(s): Claudia Brusasco, Gregorio Santori, Elisa Bruzzo, Rosella Trò, Chiara Robba, Guido Tavazzi, Fabio Guarracino, Francesco Forfori, Patrizia Boccacci, Francesco Corradi
Software Mentions: 2
Published: about 5 years ago

10.1016/j.ebiom.2016.07.022

Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer
Cited by: 60
Author(s): Sarah L. Kerns, Leila Dorling, Laura Fachal, Søren M. Bentzen, Paul D.P. Pharoah, Daniel R. Barnes, Antonio Gómez-Caamaño, Ana Carballo, David P. Dearnaley, Paula Peleteiro, S. Gulliford, Emma Hall, Kyriaki Michailidou, Ángel Carracedo, Michael Sia, Richard G. Stock, Nelson N. Stone, Matthew R. Sydes, Jonathan P. Tyrer, Shahana Ahmed, Matthew Parliament, Harry Ostrer, Barry S. Rosenstein, Ana Vega, N.G. Burnet, Alison M. Dunning, Gillian C. Barnett, Catharine M L West
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.2092

A Bayesian approach for temporally scaling climate for modeling ecological systems
Cited by: 10
Author(s): Max Post van der Burg, Michael J. Anteau, Lisa A. McCauley, Mark T. Wiltermuth
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.2657

Effects of biotic interactions on modeled species' distribution can be masked by environmental gradients
Cited by: 50
Author(s): William Godsoe, Janet Franklin, F. Guillaume Blanchet
Software Mentions: 2
Published: almost 8 years ago

10.1002/ece3.4522

Taxonomy-based hierarchical analysis of natural mortality: polar and subpolar phocid seals
Cited by: 4
Author(s): Irina S. Trukhanova, Paul B. Conn, Peter L. Boveng
Software Mentions: 2
Published: about 6 years ago

10.1289/EHP158

Urban Dust Microbiome: Impact on Later Atopy and Wheezing
Cited by: 40
Author(s): Christina Tischer, Fabian Weikl, Alexander J. Probst, Marie Standl, Joachim Heinrich, Karin Pritsch
Software Mentions: 2
Published: almost 8 years ago

10.1155/2021/9952060

The Research on the Treatment of Metastatic Skin Cutaneous Melanoma by Huanglian Jiedu Decoction Based on the Analysis of Immune Infiltration Analysis
Cited by: 0
Author(s): Ding Li, Shifang Li, Xiaoyuan Li, Xiaowei Sun, Tian-Yue Sun, Guo-Jie Hu
Software Mentions: 2
Published: over 3 years ago

10.12688/f1000research.27393.3

Towards establishing extracellular vesicle-associated RNAs as biomarkers for HER2+ breast cancer
Cited by: 2
Author(s): Colin L. Hisey, Petr Tomek, Yohanes Nursalim, Larry Chamley, Euphemia Leung
Software Mentions: 2
Published: over 3 years ago

10.3389/fbioe.2021.616830

A Bioinspired in vitro Lung Model to Study Particokinetics of Nano-/Microparticles Under Cyclic Stretch and Air-Liquid Interface Conditions
Cited by: 32
Author(s): Ali Doryab, Mehmet Berat Taskin, Philipp Stahlhut, Andreas Schröppel, Sezer Orak, Carola Voss, Arti Ahluwalia, Markus Rehberg, Anne Hilgendorff, Tobias Stöger, Jürgen Gröll, Otmar Schmid
Software Mentions: 2
Published: almost 4 years ago

10.3389/fchem.2019.00899

Vienna LiverTox Workspace—A Set of Machine Learning Models for Prediction of Interactions Profiles of Small Molecules With Transporters Relevant for Regulatory Agencies
Cited by: 14
Author(s): Floriane Montanari, Bernhard Knasmüller, Stefan Michael Kohlbacher, Christoph Hillisch, Christine Baierová, Melanie Grandits, Gerhard Ecker
Software Mentions: 2
Published: almost 5 years ago

10.3389/fncom.2021.650050

A Deep Learning Approach for Automatic Seizure Detection in Children With Epilepsy
Cited by: 56
Author(s): Ahmed M. Abdelhameed, Magdy Bayoumi
Software Mentions: 2
Published: over 3 years ago

10.3389/fendo.2016.00002

IGF-Binding Proteins in Type-1 Diabetes Are More Severely Altered in the Presence of Complications
Cited by: 18
Author(s): Ashok Sharma, Sharad Purohit, Shruti Sharma, Shan Bai, Wenbo Zhi, Sithara Raju Ponny, Diane Hopkins, Leigh Steed, Bruce W. Bode, Stephen W. Anderson, Jin‐Xiong She
Software Mentions: 2
Published: almost 9 years ago

10.3389/fgene.2013.00049

Maternal Diet during Pregnancy Induces Gene Expression and DNA Methylation Changes in Fetal Tissues in Sheep
Cited by: 81
Author(s): Xianyong Lan, Evan C. Cretney, Jenna Kropp Schmidt, Karam Khateeb, Mary Anne Berg, Francisco Peñagaricano, Ronald R. Magness, A. E. Radunz, Hasan Khatib
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2016.01976

Microbial Community Structure and Function of Soil Following Ecosystem Conversion from Native Forests to Teak Plantation Forests
Cited by: 25
Author(s): Vidya de Gannes, Isaac Bekele, Denny Dipchansingh, Mark N. Wuddivira, Sunshine De Cairies, Mattias Boman, William J. Hickey
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2015.01362

The Metabolically Active Bacterial Microbiome of Tonsils and Mandibular Lymph Nodes of Slaughter Pigs
Cited by: 12
Author(s): Evelyne Mann, Beate Pinior, Stefanie U. Wetzels, Barbara U. Metzler‐Zebeli, Martin Wagner, Stephan Schmitz‐Esser
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2017.01809

Dietary Heme Induces Gut Dysbiosis, Aggravates Colitis, and Potentiates the Development of Adenomas in Mice
Cited by: 103
Author(s): Marco Constante, Gabriela Fragoso, Annie Calvé, Macha Samba-Mondonga, Manuela M. Santos
Software Mentions: 2
Published: about 7 years ago

Projects: pypi: environment

Papers Mentioning environment 569