Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: engine

https://packages.ecosyste.ms/registries/pypi.org/packages/engine

Pure python extensible SQL database engine supporting NULL values. Formally SnakeSQL.
1 version
Latest release: over 1 year ago

Papers Mentioning engine 732

10.1371/journal.pone.0217084
Assessment of BOLD and GenBank – Their accuracy and reliability for the identification of biological materials
Cited by: 141
Author(s): Kelly A. Meiklejohn, Natalie Damaso, James Robertson
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0119941
Transcriptomic Identification of ADH1B as a Novel Candidate Gene for Obesity and Insulin Resistance in Human Adipose Tissue in Mexican Americans from the Veterans Administration Genetic Epidemiology Study (VAGES)
Cited by: 35
Author(s): Deidre Winnier, Marcel Fourcaudot, Luke Norton, Muhammad Abdul‐Ghani, Shirley L. Hu, Vidya S. Farook, Dawn K. Coletta, Satish Kumar, Sobha Puppala, Geetha Chittoor, Thomas D. Dyer, Rector Arya, Melanie A. Carless, Donna M. Lehman, Joanne E. Curran, Douglas T. Cromack, Devjit Tripathy, John Blangero, Ravindranath Duggirala, Harald H.H. Göring, Christopher P. Jenkinson
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0070642
Quantitative Proteomic Analysis of Human Lung Tumor Xenografts Treated with the Ectopic ATP Synthase Inhibitor Citreoviridin
Cited by: 28
Author(s): Yi Wu, Chih‐Lin Hu, Chun Ru Chien, Yu‐Ju Chen, Hsuan‐Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 1
Published: over 11 years ago
10.3390/cancers12010166
The Crossroads of Precision Medicine and Therapeutic Decision-Making: Use of an Analytical Computational Platform to Predict Response to Cancer Treatments
Cited by: 5
Author(s): Amélie Boichard, Stéphane Richard, Razelle Kurzrock
Software Mentions: 1
Published: almost 5 years ago
10.3390/cancers12113269
TSPAN1: A Novel Protein Involved in Head and Neck Squamous Cell Carcinoma Chemoresistance
Cited by: 18
Author(s): Yoelsis García-Mayea, Cristina Mir, Laia Carballo, Josep Castellví, Jordi Temprana-Salvador, Juan Lorente, Sergio Benavente, Juana García-Pedrero, Eva Allonca, Juan P. Rodrigo, Matilde E. Lleonart
Software Mentions: 1
Published: about 4 years ago
10.1038/s41419-018-1212-7
Loss of the candidate tumor suppressor ZEB1 (TCF8, ZFHX1A) in Sézary syndrome
Cited by: 10
Author(s): Elisabetta Caprini, Antonella Bresin, Cristina Cristofoletti, Mauro Helmer Citterich, Valeria Tocco, Enrico Scala, Alessandro Monopoli, Roberto Benucci, Maria Grazia Narducci, Giandomenico Russo
Software Mentions: 1
Published: almost 6 years ago
10.1038/celldisc.2015.20
eIF2 interactions with initiator tRNA and eIF2B are regulated by post-translational modifications and conformational dynamics
Cited by: 27
Author(s): Victoria Beilsten-Edmands, Yuliya Gordiyenko, Jocky C. K. Kung, Shabaz Mohammed, Carla Schmidt, Carol V. Robinson
Software Mentions: 1
Published: over 9 years ago
10.3390/cells8121608
Multi-Omics Integration Reveals Short and Long-Term Effects of Gestational Hypoxia on the Heart Development
Cited by: 11
Author(s): Yu Gao, Chiranjib Dasgupta, Lei Huang, Rui Song, Ziwei Zhang, Li Zhang
Software Mentions: 1
Published: almost 5 years ago
10.3390/cells9071724
The Secretome Analysis of Activated Human Renal Fibroblasts Revealed Beneficial Effect of the Modulation of the Secreted Peptidyl-Prolyl Cis-Trans Isomerase A in Kidney Fibrosis
Cited by: 4
Author(s): Gry H. Dihazi, Marwa Eltoweissy, Olaf Jahn, Björn Tampe, Michael Zeisberg, Hauke S. Wülfrath, Gerhard A. Müller, Hassan Dihazi
Software Mentions: 1
Published: over 4 years ago
10.3390/cells9030572
Extracellular Vesicles from Hyperammonemic Rats Induce Neuroinflammation and Motor Incoordination in Control Rats
Cited by: 20
Author(s): Paula Izquierdo‐Altarejos, Andrea Cabrera‐Pastor, Hernan Gonzalez-King, Carmina Montoliú, Vicente Felipo
Software Mentions: 1
Published: over 4 years ago
10.1186/1749-8546-7-16
Serum proteomic, peptidomic and metabolomic profiles in myasthenia gravis patients during treatment with Qiangji Jianli Fang
Cited by: 7
Author(s): Chunmei Wang, Yonghai Lu, Zhixi Chen, Xiaobin Liu, Huey‐Jen Lin, Hui Zhao, Jinyan Chen, Yiu Wa Kwan, Sai-Ming Ngai
Software Mentions: 1
Published: over 12 years ago
10.1002/cre2.62
Launching a new journal on the Internet in an era of fake science news and predatory publishing-doing the right thing and doing the thing right
Cited by: 3
Author(s): Asbjørn Jokstad
Software Mentions: 1
Published: almost 8 years ago
10.1007/s10157-012-0708-1
Profiling of kidney vascular endothelial cell plasma membrane proteins by liquid chromatography–tandem mass spectrometry
Cited by: 7
Author(s): Zan Liu, Bin Xu, Masaaki Nameta, Ying Zhang, Sameh Magdeldin, Yutaka Yoshida, Keiko Yamamoto, Hidehiko Fujinaka, Eishin Yaoita, Masayuki Tasaki, Yuki Nakagawa, Kazuhide Saito, Kota Takahashi, Tadashi Yamamoto
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12014-016-9133-x
Implementation and evaluation of amyloidosis subtyping by laser-capture microdissection and tandem mass spectrometry
Cited by: 55
Author(s): Peter Mollee, Samuel Boros, Dorothy Loo, Jayde E. Ruelcke, Vanessa Lakis, Kim‐Anh Lê Cao, Patricia Renaut, Michelle M. Hill
Software Mentions: 1
Published: about 8 years ago
10.1186/s12014-021-09321-1
A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19)
Cited by: 7
Author(s): Andrew T. Rajczewski, Subina Mehta, Dinh Duy An Nguyen, Björn Grüning, James E. Johnson, Thomas McGowan, Timothy J. Griffin, Pratik Jagtap
Software Mentions: 1
Published: over 3 years ago
10.1186/1559-0275-10-4
Potential tumor biomarkers identified in ovarian cyst fluid by quantitative proteomic analysis, iTRAQ
Cited by: 35
Author(s): Björg Kristjánsdóttir, Kristina Levan, Karolina Partheen, Elisabet Carlsohn, Karin Sundfeldt
Software Mentions: 1
Published: over 11 years ago
10.1177/1740774520976561
Dynamic methods for ongoing assessment of site-level risk in risk-based monitoring of clinical trials: A scoping review
Cited by: 4
Author(s): William J. Cragg, Caroline Hurley, Victoria Yorke-Edwards, Sally Stenning
Software Mentions: 1
Published: almost 4 years ago
10.6061/clinics/2016(08)04
The Internet versus pediatricians as a source of infant teething information for parents in Turkey
Cited by: 6
Author(s): Eda Haznedaroğlu, Ali Menteş
Software Mentions: 1
Published: almost 9 years ago
10.1155/2016/9656453
A Hybrid Neural Network Model for Sales Forecasting Based on ARIMA and Search Popularity of Article Titles
Cited by: 24
Author(s): Hani Omar, Van Hai Hoang, Duen‐Ren Liu
Software Mentions: 1
Published: almost 9 years ago
10.7759/cureus.5360
Google Search Trends in Oncology and the Impact of Celebrity Cancer Awareness
Cited by: 26
Author(s): Tasneem Kaleem, Timothy D. Malouff, William C. Stross, Mark R. Waddle, Daniel Miller, Audrey L Seymour, Nicholas G. Zaorsky, Robert C. Miller, Daniel M. Trifiletti, Laura A. Vallow
Software Mentions: 1
Published: over 5 years ago
10.7759/cureus.5313
Gender Differences in Article Citations by Authors from American Institutions in Major Radiology Journals
Cited by: 6
Author(s): Mingqian Huang, Kiyon Naser-Tavakolian, Michael Clifton, Ana M. Franceschi, Derek Kim, Jill Z Zhang, Mark E. Schweitzer
Software Mentions: 1
Published: over 5 years ago
10.7759/cureus.11862
Findings of Esophagogastroduodenoscopy in Patients Suspected of Upper Gastrointestinal Bleeding Referred to the Main Endoscopy Unit at King Fahad Specialist Hospital
Cited by: 0
Author(s): Abdallah Alatawi, Wejdan Aljohani, Rabab T. Aljayani, Yassmeen Alblowi, Maisaa Mokhtar M. Yousuf, Hadeel Almutairi
Software Mentions: 1
Published: almost 4 years ago
10.7759/cureus.6852
Evaluation of the Quality and Reliability of YouTube Videos on Rotator Cuff Tears
Cited by: 47
Author(s): Tolgahan Kuru, H. Yener Erken
Software Mentions: 1
Published: almost 5 years ago
10.7759/cureus.15224
Epilepsy Websites in Africa: State of the Art
Cited by: 0
Author(s): Yahya Naji, Tawab Ait Abdelmoula, Khawla Ait Mhand, Raymond Klevor, Najib Kissani
Software Mentions: 1
Published: over 3 years ago
10.7759/cureus.10719
The Impact of COVID-19 on Italian Web Users: A Quantitative Analysis of Regional Hygiene Interest and Emotional Response
Cited by: 12
Author(s): Alessandro Rovetta, Lucia Castaldo
Software Mentions: 1
Published: about 4 years ago
10.1016/j.dib.2020.105784
Traffic and log data captured during a cyber defense exercise
Cited by: 5
Author(s): Daniel Tovarňák, Stanislav Špaček, Jan Vykopal
Software Mentions: 1
Published: over 4 years ago
10.1016/j.dib.2016.06.013
Human lung epithelial cell A549 proteome data after treatment with titanium dioxide and carbon black
Cited by: 4
Author(s): Ngoc Q. Vuong, Patrick Goegan, Susantha Mohottalage, Dalibor Breznan, Marianne B. Ariganello, Andrew Williams, Fred Elisma, Subramanian Karthikeyan, Renaud Vincent, Premkumari Kumarathasan
Software Mentions: 1
Published: about 8 years ago
10.1016/j.dib.2020.105163
Data on bioactive peptides derived from chicken hydrolysate with potential alcohol dehydrogenase stabilizing activity and in silico analysis of their potential activity and applicability
Cited by: 1
Author(s): Chuqiao Xiao, Ming Zhao, Feibai Zhou, Marta Gallego, Fidel Toldrá, Leticia Mora
Software Mentions: 1
Published: over 4 years ago
10.1016/j.dib.2018.03.017
Hyperedge bundling: Data, source code, and precautions to modeling-accuracy bias to synchrony estimates
Cited by: 3
Author(s): Sheng H. Wang, Muriel Lobier, Felix Siebenhühner, Tuomas Puoliväli, Satu Palva, Satu Palva
Software Mentions: 1
Published: over 6 years ago
10.1093/database/bax099
YAAM: Yeast Amino Acid Modifications Database
Cited by: 10
Author(s): Leonardo Ledesma, Eduardo Benítez Sandoval, Uriel Cruz-Martínez, Ana María Escalante, Selene Mejía, Paola Moreno-Álvarez, E.L. Ramos Avila, Erik Velásquez García, Gerardo Coello, Francisco Torres-Quiroz
Software Mentions: 1
Published: almost 7 years ago
10.1111/j.1464-5491.2012.03765.x
Changes in physical activity and modelled cardiovascular risk following diagnosis of diabetes: 1‐year results from the ADDITION‐Cambridge trial cohort
Cited by: 11
Author(s): Ansam Barakat, Kate Williams, A. Toby Prevost, Ann‐Louise Kinmonth, Nicholas J. Wareham, Simon J. Griffin, Rebecca K. Simmons
Software Mentions: 1
Published: almost 12 years ago