Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: engine

https://packages.ecosyste.ms/registries/pypi.org/packages/engine

Pure python extensible SQL database engine supporting NULL values. Formally SnakeSQL.
1 version
Latest release: over 1 year ago

Papers Mentioning engine 732

10.1042/BSR20180536
Differential expression of NPM, GSTA3, and GNMT in mouse liver following long-term in vivo irradiation by means of uranium tailings
Cited by: 3
Author(s): Yi Liang, Hongxiang Mu, Nan Hu, Jing Sun, Jie Yin, Keren Dai, Dongyang Long, Dexin Ding
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-020-77535-8
Proteomics analysis of serum small extracellular vesicles for the longitudinal study of a glioblastoma multiforme mouse model
Cited by: 11
Author(s): Federica Anastasi, Francesco Greco, Marialaura Dilillo, Eleonora Vannini, Valentina Cappello, Laura Baroncelli, Mario Costa, Mauro Gemmi, Matteo Caleo, Liam A. McDonnell
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-61686-9
Comparing Social media and Google to detect and predict severe epidemics
Cited by: 36
Author(s): Loukas Samaras, Elena García‐Barriocanal, Miguel-Ángel Sicília
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-019-53833-8
Age and sex subgroups vulnerable to copycat suicide: evaluation of nationwide data in South Korea
Cited by: 7
Author(s): Hahn Yi, Jae Cheol Hwang, Hyun‐Jin Bae, Namkug Kim
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-020-57665-9
Proteomic analysis reveals potential factors associated with enhanced EPS production in Streptococcus thermophilus ASCC 1275
Cited by: 11
Author(s): Aparna Padmanabhan, Tong Yin, Qinglong Wu, Clive Lo, Nagendra P. Shah
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-77346-x
Acute pathophysiological myocardial changes following intra-cardiac electrical shocks using a proteomic approach in a sheep model
Cited by: 4
Author(s): Alexandre Bodin, Valérie Labas, Arnaud Bisson, Ana-Paula Teixeira-Gomes, Hélène Blasco, Daniel Tomas, Lucie Combes‐Soia, Paulo Marcelo, Élodie Miquelestorena-Standley, Christophe Baron, Denis Angoulvant, Dominique Babuty, Nicolas Clémenty
Software Mentions: 2
Published: about 4 years ago
10.1186/s12978-019-0804-8
Prevalence of unwanted pregnancy in Iranian women: a systematic review and meta-analysis
Cited by: 7
Author(s): Rostam Jalali, Masoud Mohammadi, Asad Vaisi-Raygani, Akram Ghobadi, Nader Salari
Software Mentions: 2
Published: about 5 years ago
10.1098/rsos.200622
Gait coordination in overground walking with a virtual reality avatar
Cited by: 4
Author(s): Artur A Soczawa-Stronczyk, Mateusz Bocian
Software Mentions: 2
Published: over 4 years ago
10.1038/srep29823
Systematic investigation of transcription factors critical in the protection against cerebral ischemia by Danhong injection
Cited by: 31
Author(s): Junying Wei, Yanqiong Zhang, Qiang Jia, Mingwei Liu, Defeng Li, Yi Zhang, Lei Song, Yanzhen Hu, Minghua Xian, Hongjun Yang, Chen Ding, Lusheng Huang
Software Mentions: 2
Published: over 8 years ago
10.1002/pmic.201100578
jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats
Cited by: 28
Author(s): Johannes Griss, Florian Reisinger, Henning Hermjakob, Juan Antonio Vizcaíno
Software Mentions: 2
Published: over 12 years ago
10.3390/proteomes7010008
Comparative Proteome-Wide Analysis of Bone Marrow Microenvironment of β-Thalassemia/Hemoglobin E
Cited by: 6
Author(s): Saranyoo Ponnikorn, Rungrawee Mongkolrob, Suwit Klongthalay, Sittiruk Roytrakul, Kitima Srisanga, Sumalee Tungpradabkul, Suradej Hongeng
Software Mentions: 2
Published: over 5 years ago
10.1155/2020/4741237
A Phenotypic Characterization of Two Isolates of a Multidrug-Resistant Outbreak Strain of <i>Mycobacterium tuberculosis</i> with Opposite Epidemiological Fitness
Cited by: 2
Author(s): Jinlong Bei, María Mercedes Bigi, Analı́a Lima, Qi Zhang, Federico Carlos Blanco, Beatriz López, Ting Yu, Zhilin Wang, Zhangyan Dai, Zhuang Chen, Angel Cataldi, Marı́a del Carmen Sasiain, Viviana Ritacco, Silvia de la Barrera, Marcelo Soria, Rosario Durán, Fabiana Bigi
Software Mentions: 2
Published: over 4 years ago
10.1111/acel.12261
Exome sequencing of three cases of familial exceptional longevity
Cited by: 14
Author(s): Timothy P. Cash, Guillermo Pita, Orlando Domı́nguez, María R. Alonso, Leticia T. Moreno, Consuelo Borrás, Leocadio Rodrı́guez-Mañas, Catalina Santiago, Nuria Garatachea, Alejandro Lucía, Juan A. Avellana, José Viña, Anna González‐Neira, Manuel Serrano
Software Mentions: 2
Published: over 10 years ago
10.1093/braincomms/fcaa141
Non-invasive measurement of fasciculation frequency demonstrates diagnostic accuracy in amyotrophic lateral sclerosis
Cited by: 6
Author(s): Arina Tamborska, James A. Bashford, Aidan Wickham, Raquel Iniesta, Urooba Masood, Cristina Cabassi, Domen Planinc, Emma F. Hodson-Tole, Emmanuel M. Drakakis, Martyn G. Boutelle, Kerry Mills, Christopher E. Shaw
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12913-017-2450-6
Patient reported outcome measures for measuring dignity in palliative and end of life care: a scoping review
Cited by: 16
Author(s): Bridget Johnston, Kate Flemming, Melanie Narayanasamy, Carolyn Coole, Beth Hardy
Software Mentions: 2
Published: over 7 years ago
10.1186/1477-5956-7-9
A novel approach to denoising ion trap tandem mass spectra
Cited by: 27
Author(s): Jiarui Ding, Jinhong Shi, Guy G. Poirier, Fang‐Xiang Wu
Software Mentions: 2
Published: over 15 years ago
10.3390/s20216022
Voice Communication in Noisy Environments in a Smart House Using Hybrid LMS+ICA Algorithm
Cited by: 10
Author(s): Radek Martínek, Jan Vaňuš, Jan Nedoma, Michael Fridrich, Jaroslav Frnda, Aleksandra Kawala-Sterniuk
Software Mentions: 2
Published: about 4 years ago
10.3390/s20226552
Head-Mounted Display-Based Application for Cognitive Training
Cited by: 18
Author(s): José Varela-Aldás, Guillermo Palacios-Navarro, Rebecca E. Amariglio, Iván García‐Magariño
Software Mentions: 2
Published: about 4 years ago
10.1002/prp2.305
Physiologically based pharmacokinetic modeling of tea catechin mixture in rats and humans
Cited by: 16
Author(s): F. C. P. Law, Meicun Yao, Huichang Bi, Stephen Lam
Software Mentions: 2
Published: over 7 years ago
10.3390/s21062046
Exploring Signals on L5/E5a/B2a for Dual-Frequency GNSS Precise Point Positioning
Cited by: 5
Author(s): Nacer Naciri, André Hauschild, Sunil Bisnath
Software Mentions: 2
Published: over 3 years ago
10.1093/jxb/eraa194
Uncovering the role of a positive selection site of wax ester synthase/diacylglycerol acyltransferase in two closely related Stipa species in wax ester synthesis under drought stress
Cited by: 4
Author(s): Yunqiang Yang, Zhili Zhou, Yan Li, Yanqiu Lv, Danni Yang, Shihai Yang, Jianshuang Wu, Xiong Li, Zheng Gu, Xudong Sun, Yongping Yang
Software Mentions: 2
Published: over 4 years ago
10.1186/s13643-015-0125-0
Applying systematic review search methods to the grey literature: a case study examining guidelines for school-based breakfast programs in Canada
Cited by: 401
Author(s): Katelyn Godin, Jackie Stapleton, Sharon I. Kirkpatrick, Rhona M. Hanning, Scott T. Leatherdale
Software Mentions: 2
Published: about 9 years ago
10.7717/peerj-cs.449
An architecture for non-linear discovery of aggregated multimedia document web search results
Cited by: 4
Author(s): Abdur Rehman Khan, Umer Rashid, Khalid Saleem, Adeel Ahmed
Software Mentions: 2
Published: over 3 years ago
10.1186/s13643-021-01709-2
Mapping evidence on standards and quality of care for older persons in long-term care facilities: a scoping review protocol
Cited by: 3
Author(s): Letasha Kalideen, Pragashnie Govender, Jacqueline Van Wyk, Desmond Kuupiel
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.ppat.1006001
The Listeria monocytogenes PASTA Kinase PrkA and Its Substrate YvcK Are Required for Cell Wall Homeostasis, Metabolism, and Virulence
Cited by: 61
Author(s): Daniel A. Pensinger, Kyle Boldon, Grischa Y. Chen, William J.B. Vincent, Sherman Kyle, Min Xiong, Adam J. Schaenzer, Emily R. Forster, Jörn Coers, Rob Striker, John-Demian Sauer
Software Mentions: 2
Published: about 8 years ago
10.3390/proteomes6040039
Exploring Morphine-Triggered PKC-Targets and Their Interaction with Signaling Pathways Leading to Pain via TrkA
Cited by: 12
Author(s): Darlene Aparecida Pena, Mariana Lemos Duarte, Dimitrius T. Pramio, Lakshmi A. Devi, Deborah Schechtman
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-021-98201-7
Proteomic and molecular dynamic investigations of PTM-induced structural fluctuations in breast and ovarian cancer
Cited by: 6
Author(s): Д. А. Тихонов, Liudmila I. Kulikova, Arthur T. Kopylov, Vladimir R. Rudnev, Alexander A. Stepanov, Kristina A. Malsagova, Alexander Izotov, Д. А. Куликов, Aleksei Zulkarnaev, Dmitry Enikeev, Natalia V. Potoldykova, Anna L. Kaysheva
Software Mentions: 2
Published: about 3 years ago
10.1007/s13361-018-2000-4
Oligomerisation of Synaptobrevin-2 Studied by Native Mass Spectrometry and Chemical Cross-Linking
Cited by: 12
Author(s): Sabine Wittig, Caroline Haupt, Waldemar Hoffmann, Susann Kostmann, Kevin Pagel, Carla Schmidt
Software Mentions: 2
Published: over 6 years ago
10.1186/s12913-015-0933-x
A systematic review of hospital accreditation: the challenges of measuring complex intervention effects
Cited by: 151
Author(s): Kirsten Brubakk, Gunn Elisabeth Vist, Geir Bukholm, Paul Barach, Ole Tjomsland
Software Mentions: 2
Published: over 9 years ago
10.1074/jbc.M115.700930
The Rab-binding Profiles of Bacterial Virulence Factors during Infection
Cited by: 12
Author(s): Ernest C. So, Gunnar N. Schroeder, Danielle Carson, Corinna Mattheis, Aurélie Mousnier, Malgorzata Broncel, Edward W. Tate, Gad Frankel
Software Mentions: 2
Published: over 8 years ago
10.1093/gigascience/giaa028
Binning unassembled short reads based on k-mer abundance covariance using sparse coding
Cited by: 6
Author(s): Olexiy Kyrgyzov, Vincent Prost, Stéphane Gazut, Bruno Farcy, Thomas Brüls
Software Mentions: 2
Published: over 4 years ago
10.1136/bmjopen-2020-042860
Global impact of tobacco control policies on smokeless tobacco use: a systematic review protocol
Cited by: 9
Author(s): Monika Arora, Aastha Chugh, Neha Jain, Masuma Pervin Mishu, Melanie Boeckmann, Suranji Dahanayake, Jappe Eckhardt, Sarah Forberger, Rumana Huque, Mona Kanaan, Zohaib Khan, Ravi Mehrotra, Muhammad Aziz Rahman, Anne Readshaw, Aziz Sheikh, Kamran Siddiqi, Aishwarya Vidyasagaran, Omara Dogar
Software Mentions: 2
Published: almost 4 years ago
10.1007/s10791-017-9306-x
There’s a creepy guy on the other end at Google!: engaging middle school students in a drawing activity to elicit their mental models of Google
Cited by: 24
Author(s): Christie Kodama, Beth St. Jean, Mega Subramaniam, Natalie Greene Taylor
Software Mentions: 2
Published: over 7 years ago
10.1074/jbc.RA119.007504
The priming factor CAPS1 regulates dense-core vesicle acidification by interacting with rabconnectin3β/WDR7 in neuroendocrine cells
Cited by: 7
Author(s): Ellen Crummy, Muralidharan Mani, John C. Thellman, Thomas F.J. Martin
Software Mentions: 2
Published: over 5 years ago
10.1534/g3.115.017053
The Mosaic Mutants of Cucumber: A Method to Produce Knock-Downs of Mitochondrial Transcripts
Cited by: 9
Author(s): Angel R. Del Valle-Echevarria, Agnieszka Kiełkowska, Grzegorz Bartoszewski, Michael J. Havey
Software Mentions: 2
Published: over 9 years ago
10.3389/fpls.2016.00905
Gibberellin-Stimulation of Rhizome Elongation and Differential GA-Responsive Proteomic Changes in Two Grass Species
Cited by: 10
Author(s): Xiqing Ma, Bingru Huang
Software Mentions: 2
Published: over 8 years ago
10.3389/fonc.2020.598508
Cancer During Pregnancy: How to Handle the Bioethical Dilemmas?—A Scoping Review With Paradigmatic Cases-Based Analysis
Cited by: 10
Author(s): Diogo Alpuim Costa, José Guilherme Gonçalves Nobre, Susana Baptista de Almeida, Marisa Horta Ferreira, Inês Gonçalves, Sofía Braga, Diogo Pais
Software Mentions: 2
Published: almost 4 years ago
10.3389/fmicb.2020.594743
Systematic Analysis of Lysine Lactylation in the Plant Fungal Pathogen Botrytis cinerea
Cited by: 37
Author(s): Mingming Gao, Ning Zhang, Wenxing Liang
Software Mentions: 2
Published: about 4 years ago
10.3389/fphar.2018.01089
Empirical Scoring Functions for Structure-Based Virtual Screening: Applications, Critical Aspects, and Challenges
Cited by: 170
Author(s): Isabella Alvim Guedes, Felipe Siconha S Pereira, Laurent E. Dardenne
Software Mentions: 2
Published: about 6 years ago
10.3390/genes12070991
Machine Learning Prediction of Biomarkers from SNPs and of Disease Risk from Biomarkers in the UK Biobank
Cited by: 11
Author(s): Erik Widén, Timothy G. Raben, Louis Lello, Stephen Hsu
Software Mentions: 2
Published: over 3 years ago
10.1074/jbc.RA120.015694
α2-Macroglobulin-like protein 1 can conjugate and inhibit proteases through their hydroxyl groups, because of an enhanced reactivity of its thiol ester
Cited by: 5
Author(s): Seandean L. Harwood, Nadia Sukusu Nielsen, Kathrine Tejlgård Jensen, Peter Kresten Nielsen, Ida B. Thøgersen, Jan J. Enghild
Software Mentions: 2
Published: almost 4 years ago
10.3389/fcell.2020.624985
Integrative Proteomic and Phosphoproteomic Analyses of Granulosa Cells During Follicular Atresia in Porcine
Cited by: 4
Author(s): Feng Yang, Qiang Liu, Yanhong Chen, Huizhen Ye, Han Wang, Shenming Zeng
Software Mentions: 2
Published: almost 4 years ago
10.1002/2211-5463.13166
Three‐dimensional structures of avian beta‐microseminoproteins: insight from the chicken egg‐specific beta‐microseminoprotein 3 paralog
Cited by: 2
Author(s): Franck Coste, Thierry Moreau, Valérie Labas, Magali Chessé, Mégane Brégeon, Hervé Meudal, Karine Loth, B. Castaing, Nicolas Guyot, Sophie Réhault-Godbert
Software Mentions: 2
Published: over 3 years ago
10.3389/fgene.2021.656526
Identification of miRNA-Mediated Subpathways as Prostate Cancer Biomarkers Based on Topological Inference in a Machine Learning Process Using Integrated Gene and miRNA Expression Data
Cited by: 0
Author(s): Ziyu Ning, Shuang Yu, Yanqiao Zhao, Xiaoming Sun, Haibin Wu, Xiaoyang Yu
Software Mentions: 2
Published: over 3 years ago
10.1186/s13017-021-00395-8
Global impact of COVID-19 pandemic on road traffic collisions
Cited by: 76
Author(s): Yasin Jemal Yasin, Michal Grivna, Fikri M. Abu‐Zidan
Software Mentions: 2
Published: about 3 years ago
10.1186/s13017-021-00390-z
Systematic review of the efficacy of a hybrid operating theatre in the management of severe trauma
Cited by: 2
Author(s): Chun Yuet Khoo, Yi Song Terence Liew, Sachin Mathur
Software Mentions: 2
Published: about 3 years ago
10.3390/e22030261
A Method Based on GA-CNN-LSTM for Daily Tourist Flow Prediction at Scenic Spots
Cited by: 24
Author(s): Wen‐Xing Li, Haidong Rui, Changyong Liang, Li Jiang, Shuping Zhao, Keqing Li
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2021.663019
Pathological Features of Enterovirus 71-Associated Brain and Lung Damage in Mice Based on Quantitative Proteomic Analysis
Cited by: 9
Author(s): Yuefei Jin, Dong Liu, Tiantian Sun, Yue Du, Yanlei Gao, Ronghua Ding, Wangquan Ji, Weiguo Zhang, Haiyan Yang, Shuaiyin Chen, Guangcai Duan
Software Mentions: 2
Published: over 3 years ago
10.1093/database/baw040
RegenBase: a knowledge base of spinal cord injury biology for translational research
Cited by: 10
Author(s): Alison Callahan, Saminda Abeyruwan, Hassan Al-Ali, Kazuhiko Sakurai, Adam R. Ferguson, Phillip G. Popovich, Nigam H. Shah, Ubbo Visser, John L. Bixby, Vance Lemmon
Software Mentions: 2
Published: almost 9 years ago
10.1007/s41701-019-00065-w
The SFU Opinion and Comments Corpus: A Corpus for the Analysis of Online News Comments
Cited by: 38
Author(s): Varada Kolhatkar, Han‐Han Wu, Luca Cavasso, Emilie Francis, Kavan Shukla, Maïté Taboada
Software Mentions: 2
Published: about 5 years ago
10.1038/s42003-019-0394-6
Isolation and mass spectrometry based hydroxyproline mapping of type II collagen derived from Capra hircus ear cartilage
Cited by: 13
Author(s): Pintu Maity, Debabrata Dutta, Sayan Ganguly, Kausik Kapat, Krishna Dixit, Amit Roy Chowdhury, Ramapati Samanta, Narayan Chandra Das, Pallab Datta, Amit Kumar Das, Santanu Dhara
Software Mentions: 2
Published: over 5 years ago
10.1002/1878-0261.12506
Joint action of miR‐126 and MAPK/PI3K inhibitors against metastatic melanoma
Cited by: 13
Author(s): Francesca Pedini, Gabriele De Luca, Federica Felicetti, Rossella Puglisi, Alessandra Boe, Maria Beatrice Arasi, Federica Fratini, Gianfranco Mattia, Massimo Spada, Simona Caporali, Mauro Biffoni, Alessandro Giuliani, Alessandra Caré, Nadia Felli
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2105-12-S2-S6
Processing SPARQL queries with regular expressions in RDF databases
Cited by: 11
Author(s): Jin Soo Lee, Minh Duc Pham, Ji‐Hwan Lee, Wook-Shin Han, Hune Cho, Hwanjo Yu, Jeong Hoon Lee
Software Mentions: 2
Published: over 13 years ago
10.1155/2016/1281379
ATIPS: Automatic Travel Itinerary Planning System for Domestic Areas
Cited by: 13
Author(s): Hsien-Tsung Chang, Yi-Ming Chang, Meng-Tze Tsai
Software Mentions: 2
Published: almost 9 years ago
10.3389/fmicb.2020.564350
Global Proteomic Analysis of Lysine Crotonylation in the Plant Pathogen Botrytis cinerea
Cited by: 7
Author(s): Ning Zhang, Zhenzhou Yang, Wenxing Liang, Mengjie Liu
Software Mentions: 2
Published: about 4 years ago
10.1186/1758-2946-4-1
Making SharePoint® Chemically Aware™
Cited by: 43
Author(s): Kartik Tallapragada, Joseph H. Chewning, David C. Kombo, Beverly Ludwick
Software Mentions: 2
Published: almost 13 years ago
10.1371/journal.pone.0220568
Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome
Cited by: 6
Author(s): Dragana Lagundžin, Wen Feng Hu, Henry C.-H. Law, Kimiko L. Krieger, Fangfang Qiao, Emalie J. Clement, Andjela Drincic, Olgica Nedić, Michael J. Naldrett, Sophie Alvarez, Nicholas T. Woods
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0045921
Patterns of Information-Seeking for Cancer on the Internet: An Analysis of Real World Data
Cited by: 57
Author(s): Yishai Ofran, Ora Paltiel, Dan Pelleg, Jacob M. Rowe, Elad Yom-Tov
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pone.0149637
Proteome Based Construction of the Lymphocyte Function-Associated Antigen 1 (LFA-1) Interactome in Human Dendritic Cells
Cited by: 2
Author(s): Christina Eich, Edwin Lasonder, Luis J. Cruz, Inge Reinieren-Beeren, Alessandra Cambi, Carl G. Figdor, Sonja I. Buschow
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12884-016-0856-5
Internet use by pregnant women seeking pregnancy-related information: a systematic review
Cited by: 259
Author(s): Padaphet Sayakhot, Mary Carolan
Software Mentions: 2
Published: over 8 years ago
10.15252/msb.20167357
Proteomics reveals the effects of sustained weight loss on the human plasma proteome
Cited by: 171
Author(s): Philipp Geyer, Nicolai J. Wewer Albrechtsen, Stefka Tyanova, Niklas Graßl, Eva W. Iepsen, Julie Lundgren, Sten Madsbad, Jens J. Holst, Signe S. Torekov, Matthias Mann
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0091433
Detection of Viral Proteins in Human Cells Lines by Xeno-Proteomics: Elimination of the Last Valid Excuse for Not Testing Every Cellular Proteome Dataset for Viral Proteins
Cited by: 3
Author(s): Alexey Chernobrovkin, Roman A. Zubarev
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0246548
Urban-rural differences in COVID-19 exposures and outcomes in the South: A preliminary analysis of South Carolina
Cited by: 94
Author(s): Qian Huang, Sarah Jackson, Sahar Derakhshan, Logan Lee, Erika O. Pham, Amber Jackson, Susan L. Cutter
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12864-015-1753-4
Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis
Cited by: 44
Author(s): Long-Yau Lin, Chia‐Lang Hsu, Chih‐Lin Hu, Shiao Yun Ko, Hsu-Liang Hsieh, Hsuan‐Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 2
Published: over 9 years ago
10.1016/j.dib.2015.02.013
Supporting data for comparative proteomic analysis of Listeria monocytogenes ATCC 7644 exposed to a sublethal concentration of nisin
Cited by: 0
Author(s): Kendi Nishino Miyamoto, Karina Mariante Monteiro, Karin da Silva Caumo, Karina Rodrigues Lorenzatto, Henrique Bunselmeyer Ferreira, Adriano Brandelli
Software Mentions: 2
Published: over 9 years ago
10.1093/database/bav037
PEIMAN 1.0: Post-translational modification Enrichment, Integration and Matching ANalysis
Cited by: 8
Author(s): Payman Nickchi, Mohieddin Jafari, Shiva Kalantari
Software Mentions: 2
Published: almost 10 years ago
10.3390/molecules25246003
Structure-Based Discovery and Bioactivity Evaluation of Novel Aurora-A Kinase Inhibitors as Anticancer Agents via Docking-Based Comparative Intermolecular Contacts Analysis (dbCICA)
Cited by: 10
Author(s): Majd S. Hijjawi, Reem Fawaz Abutayeh, Mutasem O. Taha
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0113924
IgG Antibodies to Cyclic Citrullinated Peptides Exhibit Profiles Specific in Terms of IgG Subclasses, Fc-Glycans and a Fab-Peptide Sequence
Cited by: 31
Author(s): Susanna L. Lundström, Cátia Fernandes‐Cerqueira, A. Jimmy Ytterberg, Elena Ossipova, Aase Hensvold, Per‐Johan Jakobsson, Vivianne Malmström, Anca I. Catrina, Lars Klareskog, Karin Lundberg, Roman A. Zubarev
Software Mentions: 2
Published: almost 10 years ago
10.1186/s12870-014-0412-2
NexGenEx-Tom: a gene expression platform to investigate the functionalities of the tomato genome
Cited by: 16
Author(s): Hamed Bostan, Maria Luisa Chiusano
Software Mentions: 2
Published: almost 10 years ago
10.1186/s12889-019-7850-6
A review of the impact of financing mechanisms on maternal health care in Australia
Cited by: 10
Author(s): Haylee Fox, Stephanie M. Topp, Emily Callander, Daniel Lindsay
Software Mentions: 2
Published: about 5 years ago
10.1186/s12864-019-6151-x
Proteomic analysis showing the signaling pathways involved in the rhizome enlargement process in Nelumbo nucifera
Cited by: 16
Author(s): Dingding Cao, Rebecca Njeri Damaris, Yue Zhang, Meihui Liu, Ming Li, Pingfang Yang
Software Mentions: 2
Published: about 5 years ago
10.4178/epih.e2018041
A review of methods to estimate the visibility factor for bias correction in network scale-up studies
Cited by: 7
Author(s): Ali-Akbar Haghdoost, Milad Ahmadi Gohari, Ali Mirzazadeh, Farzaneh Zolala, Mohammad Reza Baneshi
Software Mentions: 2
Published: over 6 years ago
10.3389/fnbeh.2017.00122
Using Virtual Reality to Assess Ethical Decisions in Road Traffic Scenarios: Applicability of Value-of-Life-Based Models and Influences of Time Pressure
Cited by: 60
Author(s): Leon René Sütfeld, Richard Gast, Peter König, Gordon Pipa
Software Mentions: 2
Published: over 7 years ago
10.3389/fbioe.2020.01028
Evaluation of the Enzymatic Arsenal Secreted by Myceliophthora thermophila During Growth on Sugarcane Bagasse With a Focus on LPMOs
Cited by: 12
Author(s): Maria Angela B. Grieco, Mireille Haon, Sacha Grisel, Ana Lúcia Oliveira-Carvalho, Augusto Vieira Magalhães, Russolina B. Zingali, Nei Pereira, Jean‐Guy Berrin
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0228708
Investigating the ferric ion binding site of magnetite biomineralisation protein Mms6
Cited by: 10
Author(s): Andrea E. Rawlings, Panah Liravi, Sybilla Corbett, Alex S. Holehouse, Sarah S. Staniland
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2018.01316
A Bcl-2 Associated Athanogene (bagA) Modulates Sexual Development and Secondary Metabolism in the Filamentous Fungus Aspergillus nidulans
Cited by: 4
Author(s): Sachin Jain, Philipp Wiemann, Elizabeth Thill, Brett Williams, Nancy P. Keller, Mehdi Kabbage
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0151087
Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli
Cited by: 25
Author(s): P. Javidpour, Samuel Deutsch, Vivek K. Mutalik, Nathan J. Hillson, Young-Mo Kim, Jay D. Keasling, Harry R. Beller
Software Mentions: 2
Published: over 8 years ago
10.3389/fnmol.2018.00438
Ca2+ Requirements for Long-Term Depression Are Frequency Sensitive in Purkinje Cells
Cited by: 14
Author(s): C G Zamora Chimal, Erik De Schutter
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12904-019-0495-5
Telehealth in palliative care is being described but not evaluated: a systematic review
Cited by: 85
Author(s): Sophie Hancock, Nancy Preston, Helen Jones, Amy Gadoud
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0228134
Proteomic profiling of proteins in the dorsal horn of the spinal cord in dairy cows with chronic lameness
Cited by: 2
Author(s): Daniel Herzberg, Pablo Strobel, Heine Yacob Müller, Constanza Meneses, Mads Werner, Hedie Bustamante
Software Mentions: 2
Published: almost 5 years ago
10.3389/fpsyg.2020.562506
Virtual Trauma Interventions for the Treatment of Post-traumatic Stress Disorders: A Scoping Review
Cited by: 15
Author(s): Thiemo Knaust, Anna Felnhofer, Oswald D. Kothgassner, Helge Höllmer, Robert-Jacek Gorzka, Holger Schulz
Software Mentions: 2
Published: about 4 years ago
10.3389/fvets.2021.660565
A Systematic Review on Validated Precision Livestock Farming Technologies for Pig Production and Its Potential to Assess Animal Welfare
Cited by: 49
Author(s): Yaneth Gómez, Anna H. Stygar, I.J.M.M. Boumans, E.A.M. Bokkers, Lene Juul Pedersen, Jarkko Niemi, Matti Pastell, Xavier Manteca, Pol Llonch
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0166424
LivePhantom: Retrieving Virtual World Light Data to Real Environments
Cited by: 3
Author(s): Hoshang Kolivand, Mark Billinghurst, Mohd Shahrizal Sunar
Software Mentions: 2
Published: almost 8 years ago
10.3390/pathogens9020145
Comparative Transcriptome Analysis of Two Cucumber Cultivars with Different Sensitivity to Cucumber Mosaic Virus Infection
Cited by: 10
Author(s): Z Šubr, Lukáš Predajňa, Katarína Šoltýs, Boris Bokor, Jaroslav Budiš, Miroslav Glasa
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2105-10-326
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)
Cited by: 112
Author(s): Thomas C. Wiegers, Allan Peter Davis, K. Bretonnel Cohen, Lynette Hirschman, Carolyn J. Mattingly
Software Mentions: 2
Published: about 15 years ago
10.1371/journal.pone.0052353
Duplication of C7orf58, WNT16 and FAM3C in an Obese Female with a t(7;22)(q32.1;q11.2) Chromosomal Translocation and Clinical Features Resembling Coffin-Siris Syndrome
Cited by: 5
Author(s): Jun Zhu, Jun Qiu, Gregg Magrane, Malak Abedalthagafi, Andrea Zanko, Mahin Golabi, Farid Chehab
Software Mentions: 2
Published: almost 12 years ago
10.1074/mcp.RA120.002359
Plasma Proteomes Can Be Reidentifiable and Potentially Contain Personally Sensitive and Incidental Findings
Cited by: 17
Author(s): Philipp E. Geyer, Sebastian Porsdam Mann, Peter V. Treit, Matthias Mann
Software Mentions: 2
Published: almost 4 years ago
10.1186/1471-2202-11-95
Proteomic characterization of an isolated fraction of synthetic proteasome inhibitor (PSI)-induced inclusions in PC12 cells might offer clues to aggresomes as a cellular defensive response against proteasome inhibition by PSI
Cited by: 8
Author(s): Xing'an Li, Yingjiu Zhang, Peng Xie, Jinhua Piao, Yihong Hu, Ming Chen, Tao Liu, Linsen Hu
Software Mentions: 2
Published: over 14 years ago
10.1172/jci.insight.98575
Comprehensive immunoproteogenomic analyses of malignant pleural mesothelioma
Cited by: 36
Author(s): Hyun-Sung Lee, Hee-Jin Jang, Jong Min Choi, Jun Zhang, Veronica Lenge De Rosen, Thomas M. Wheeler, Ju-Seog Lee, Thuydung Tu, Peter T. Jindra, Ronald H. Kerman, Sung Yun Jung, Farrah Kheradmand, David J. Sugarbaker, Bryan M. Burt
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0021991
A Novel Role of Protein Tyrosine Kinase2 in Mediating Chloride Secretion in Human Airway Epithelial Cells
Cited by: 7
Author(s): Lianchun Liang, Owen M. Woodward, Zhaohui Chen, Robert J. Cotter, William B. Guggino
Software Mentions: 2
Published: over 13 years ago
10.3390/cancers13040724
SILAC-Based Quantitative Proteomic Analysis of Oxaliplatin-Resistant Pancreatic Cancer Cells
Cited by: 11
Author(s): Young Eun Kim, Min Jung Kim, Min-Jeong Song, Tae‐Young Kim, Ho Hee Jang, Dukjin Kang
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0119217
Climate Envelope Modeling and Dispersal Simulations Show Little Risk of Range Extension of the Shipworm, Teredo navalis (L.), in the Baltic Sea
Cited by: 13
Author(s): Christin Appelqvist, Zyad Al‐Hamdani, Per R. Jonsson, Jonathan N. Havenhand
Software Mentions: 2
Published: over 9 years ago
10.1186/1476-4598-12-62
Biochemical and biological characterization of exosomes containing prominin-1/CD133
Cited by: 90
Author(s): Germana Rappa, Javier Mercapide, Fabio Anzanello, R. Marshall Pope, Aurelio Lorico
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0235071
Results of targeted next-generation sequencing in children with cystic kidney diseases often change the clinical diagnosis
Cited by: 11
Author(s): Lena Obeidová, Tomáš Seeman, Filip Fencl, Květa Bláhová, J. Hojný, Veronika Elišáková, Jana Reiterová, J Štekrová
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0204457
Expression of a recombinant, 4'-Phosphopantetheinylated, active M. tuberculosis fatty acid synthase I in E. coli
Cited by: 3
Author(s): Shoshana Baron, Yoav Peleg, Jacob Grunwald, David Morgenstern, Nadav Elad, Moshe Peretz, Shira Albeck, Yishai Levin, John T. Welch, Kim A. DeWeerd, Alon Schwarz, Yigal Burstein, Ron Diskin, Zippora Shakked, Oren Zimhony
Software Mentions: 2
Published: about 6 years ago
10.1186/1477-5956-6-25
A simple and reliable protocol for mouse serum proteome profiling studies by use of two-dimensional electrophoresis and MALDI TOF/TOF mass spectrometry
Cited by: 10
Author(s): Maria Stella Ritorto, Jürgen Borlak
Software Mentions: 2
Published: almost 17 years ago
10.1371/journal.pone.0166119
Protein O-Mannosylation in the Murine Brain: Occurrence of Mono-O-Mannosyl Glycans and Identification of New Substrates
Cited by: 22
Author(s): Markus F. Bartels, Patrick R. Winterhalter, Jin Yu, Yan Liu, Mark Lommel, Frank Möhrlen, Huaiyu Hu, Ten Feizi, Ulrika Westerlind, Thomas Ruppert, Sabine Strahl
Software Mentions: 2
Published: about 8 years ago
10.3390/mps3010015
A Fast and Accurate Method to Identify and Quantify Enzymes in Brush-Border Membranes: In Situ Hydrolysis Followed by Nano LC-MS/MS
Cited by: 7
Author(s): Antonio Brun, Melisa E Magallanes, Carlos Martı́nez del Rio, Gregory A. Barrett-Wilt, William H. Karasov, Enrique Caviedes‐Vidal
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0001440
Gene Characterization Index: Assessing the Depth of Gene Annotation
Cited by: 9
Author(s): Danielle Kemmer, Raf M. Podowski, Dimas Yusuf, Jochen Brumm, Warren A. Cheung, Claes Wahlestedt, Boris Lenhard, Wyeth W. Wasserman
Software Mentions: 2
Published: almost 17 years ago
10.1371/journal.pone.0250051
Isolation and characterization of a novel bacteriophage WO from Allonemobius socius crickets in Missouri
Cited by: 7
Author(s): Jonah Kupritz, John Martin, Kerstin Fischer, Kurt C. Curtis, Joseph R. Fauver, Yuefang Huang, Young‐Jun Choi, Wandy L. Beatty, Makedonka Mitreva, Peter U. Fischer
Software Mentions: 2
Published: over 3 years ago