Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: emcee

https://packages.ecosyste.ms/registries/pypi.org/packages/emcee

The Python ensemble sampling toolkit for MCMC
24 versions
Latest release: almost 2 years ago
118 dependent packages
90,954 downloads last month

Papers Mentioning emcee 22

10.1107/S1600576718017296

<i>refnx</i>: neutron and X-ray reflectometry analysis in Python
Cited by: 95
Author(s): Andrew Nelson, Stuart W. Prescott
Software Mentions: 8
Published: almost 6 years ago

Nonlinear effects of intrinsic dynamics on temporal encoding in a model of avian auditory cortex
Cited by: 1
Author(s): Christof Fehrman, Tyler D. Robbins, C. Daniel Meliza
Software Mentions: 5
Published: over 3 years ago

10.1098/rstb.2019.0175

Pronounced somatic bottleneck in mitochondrial DNA of human hair
Cited by: 17
Author(s): Alison Barrett, Barbara Arbeithuber, Arslan Zaidi, Peter R. Wilton, Ian M. Paul, Rasmus Nielsen, Kateryna D. Makova
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41597-019-0086-6

Posterior samples of the parameters of binary black holes from Advanced LIGO, Virgo’s second observing run
Cited by: 8
Author(s): S. De, C. Biwer, Collin D. Capano, A. Nitz, D. A. Brown
Software Mentions: 4
Published: over 5 years ago

10.3389/fneur.2020.00370

Dopamine Buffering Capacity Imaging: A Pharmacodynamic fMRI Method for Staging Parkinson Disease
Cited by: 5
Author(s): Kevin J. Black, Haley Acevedo, Jonathan M. Koller
Software Mentions: 4
Published: over 4 years ago

10.15252/msb.20199355

Bayesian modeling reveals metabolite‐dependent ultrasensitivity in the cyanobacterial circadian clock
Cited by: 10
Author(s): Hong Li, Danylo Lavrentovich, Archana G. Chavan, Eugene Leypunskiy, Eileen Li, Charles H. Matthews, Andy LiWang, Michael J. Rust, Aaron R. Dinner
Software Mentions: 3
Published: over 4 years ago

10.1038/srep42765

Duration of SHIV production by infected cells is not exponentially distributed: Implications for estimates of infection parameters and antiviral efficacy
Cited by: 31
Author(s): C. Beauchemin, Tomoyuki Miura, Shingo Iwami
Software Mentions: 3
Published: almost 8 years ago

10.1107/S160057672100563X

Determining the maximum information gain and optimizing experimental design in neutron reflectometry using the Fisher information
Cited by: 6
Author(s): James H. Durant, Lucas Wilkins, Keith T. Butler, Jonathan Cooper
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0126115

Impact of the H275Y and I223V Mutations in the Neuraminidase of the 2009 Pandemic Influenza Virus In Vitro and Evaluating Experimental Reproducibility
Cited by: 44
Author(s): Éric Paradis, Lady Tatiana Pinilla, Benjamin P. Holder, Yacine Abed, Guy Boivin, C. Beauchemin
Software Mentions: 2
Published: over 9 years ago

10.1080/14686996.2020.1791676

Materials informatics approach to understand aluminum alloys
Cited by: 11
Author(s): Ryo Tamura, Makoto Watanabe, Hiroaki Mamiya, Kota Washio, Masao Yano, Katsunori Danno, Akira Kato, Tetsuya Shoji
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep24154

Avian influenza viruses that cause highly virulent infections in humans exhibit distinct replicative properties in contrast to human H1N1 viruses
Cited by: 34
Author(s): Philippe Simon, Marc-Antoine de La Vega, Éric Paradis, Emelissa J Mendoza, Kevin M. Coombs, Darwyn Kobasa, C. Beauchemin
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pcbi.1005688

A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium
Cited by: 18
Author(s): Oliver J. Maclaren, Aimée Parker, Carmen Pin, Simon R. Carding, Alastair Watson, Alexander G. Fletcher, Helen M. Byrne, Phillip K. Maini
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1008375

Quantification of Ebola virus replication kinetics in vitro
Cited by: 8
Author(s): Laura E. Liao, Jonathan Carruthers, Sophie J. Smither, Cl Virology Team, Simon A. Weller, E. Diane Williamson, Thomas R. Laws, Isabel García-Dorival, Julian A. Hiscox, Benjamin P. Holder, C. Beauchemin, Alan S. Perelson, Martín López‐García, Grant Lythe, John N. Barr, Carmen Molina-Parı́s
Software Mentions: 2
Published: about 4 years ago

10.3390/s17112491

Extrinsic Parameter Calibration for Line Scanning Cameras on Ground Vehicles with Navigation Systems Using a Calibration Pattern
Cited by: 10
Author(s): Alexander Wendel, James Underwood
Software Mentions: 1
Published: about 7 years ago

10.3390/v12050547

Modelling Degradation and Replication Kinetics of the Zika Virus In Vitro Infection
Cited by: 6
Author(s): Veronika Bernhauerová, Veronica V. Rezelj, Marco Vignuzzi
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0222289

Characterization of sequentially-staged cancer cells using electrorotation
Cited by: 22
Author(s): Claudia Trainito, Dan Sweeney, Jaka Čemažar, Eva M. Schmelz, Olivier Français, Bruno Le Pioufle, Rafael V. Davalos
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0216161

Modelling the key drivers of an aerial Phytophthora foliar disease epidemic, from the needles to the whole plant
Cited by: 6
Author(s): Mireia Gómez-Gallego, Ralf Gommers, Martin K.‐F. Bader, N. Williams
Software Mentions: 1
Published: over 5 years ago

10.1111/gbi.12440

Carbon cycle inverse modeling suggests large changes in fractional organic burial are consistent with the carbon isotope record and may have contributed to the rise of oxygen
Cited by: 20
Author(s): Joshua Krissansen‐Totton, Michael A. Kipp, David C. Catling
Software Mentions: 1
Published: over 3 years ago

10.1098/rsos.200063

The unexpected narrowness of eccentric debris rings: a sign of eccentricity during the protoplanetary disc phase
Cited by: 19
Author(s): Grant M. Kennedy
Software Mentions: 1
Published: over 4 years ago

10.1098/rsos.211065

Efficient Bayesian inference of fully stochastic epidemiological models with applications to COVID-19
Cited by: 3
Author(s): Yuting I. Li, Günther Turk, Paul Rohrbach, Patrick Pietzonka, Julian Kappler, Rajesh Singh, Jaromír Doležal, Timothy Ekeh, Lukas Kikuchi, Joseph D. Peterson, Austen Bolitho, Hideki Kobayashi, Michael E. Cates, R. Adhikari, Robert L. Jack
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-91544-1

A hidden Markov model for lymphatic tumor progression in the head and neck
Cited by: 5
Author(s): Roman Ludwig, Bertrand Pouymayou, Panagiotis Balermpas, Jan Unkelbach
Software Mentions: 1
Published: over 3 years ago

10.26508/lsa.201800277

Competition in the chaperone-client network subordinates cell-cycle entry to growth and stress
Cited by: 13
Author(s): David F. Moreno, Eva Parisi, Galal Yahya, Federico Vaggi, Attila Csikász‐Nagy, Martí Aldea
Software Mentions: 1
Published: over 5 years ago