Projects: pypi: ecmtool
https://packages.ecosyste.ms/registries/pypi.org/packages/ecmtool
Calculates elementary conversion modes (Urbanczik & Wagner, 2005) of metabolic networks.
11 versions
Latest release: about 5 years ago
60 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Systems Biology Lab, Vrije Universiteit Amsterdam (organization)
This is the code repository of the Systems Biology Lab. Our lab studies the molecular networks inside cells that give rise to cell behaviour and fitness. Academic
This is the code repository of the Systems Biology Lab. Our lab studies the molecular networks inside cells that give rise to cell behaviour and fitness. Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+8
Science terms in README
4 scientific terms found in README -
+10
DOI references
1 DOI references found in README -
+6
Academic links
1 academic links found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
No scientific terms found in keywords/classifiers
Very Likely Science (100)
Papers Mentioning ecmtool 3
10.1126/sciadv.abh2433
Metabolic control of nitrogen fixation in rhizobium-legume symbiosesCited by: 31
Author(s): Carolin C. M. Schulte, Khushboo Borah, Rachel M. Wheatley, Jason Terpolilli, Gerhard Saalbach, Nick Crang, Daan H. de Groot, R. G. Ratcliffe, Nicholas J. Kruger, Antonis Papachristodoulou, Philip S. Poole
Software Mentions: 3
Published: almost 5 years ago
10.1016/j.patter.2020.100177
Unlocking Elementary Conversion Modes: ecmtool Unveils All Capabilities of Metabolic NetworksCited by: 9
Author(s): Tom J. Clement, Erik B. Baalhuis, Bas Teusink, Frank J. Bruggeman, Robert Planqué, Daan H. de Groot
Software Mentions: 2
Published: over 5 years ago
10.3390/metabo11050257
Understanding FBA Solutions under Multiple Nutrient LimitationsCited by: 4
Author(s): Eunice van Pelt-KleinJan, Daan H. de Groot, Bas Teusink
Software Mentions: 1
Published: about 5 years ago