Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: cutadapt
https://packages.ecosyste.ms/registries/pypi.org/packages/cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
63 versions
Latest release: about 1 year ago
14 dependent packages
40,808 downloads last month
Papers Mentioning cutadapt 1,562
10.1186/s40529-017-0191-9
A termite symbiotic mushroom maximizing sexual activity at growing tips of vegetative hyphaeCited by: 5
Author(s): Huei Mei Hsieh, Mei Chu Chung, Pao Yang Chen, Fei Man Hsu, Wen‐Wei Liao, Ai Ning Sung, Chun-Ru Lin, Rachel Wang, Yu Hsin Kao, Mei Jane Fang, Chi Yung Lai, Chieh-Chen Huang, Jyh Ching Chou, Wen Neng Chou, Bill C.H. Chang, Yu Ming Ju
Software Mentions: 1
Published: about 7 years ago
10.18632/aging.103316
Integrative analysis of miRNAs-mRNAs reveals that miR-182 up-regulation contributes to proliferation and invasion of nasopharyngeal carcinoma by targeting PTENCited by: 6
Author(s): Zhongqi Shi, Rushi Wang, Li-Gui Huang, Xiao Chen, Min Xu, Dingjun Zha, Yue Ma
Software Mentions: 1
Published: over 4 years ago
10.3389/fcimb.2020.575613
Within-Host Diversity of SARS-CoV-2 in COVID-19 Patients With Variable Disease SeveritiesCited by: 63
Author(s): Hebah A. Al-Khatib, Fatiha Benslimane, Israa Elbashir, Peter Coyle, Muna Al Maslamani, Abdullatif Al‐Khal, Asmaa A. Al Thani, Hadi M. Yassine
Software Mentions: 1
Published: about 4 years ago
10.3389/fcimb.2017.00321
Diversity of Cervical Microbiota in Asymptomatic Chlamydia trachomatis Genital Infection: A Pilot StudyCited by: 34
Author(s): Simone Filardo, Marisa Di Pietro, Maria Grazia Porpora, Nadia Recine, Alessio Farcomeni, Maria Agnese Latino, Rosa Sessa
Software Mentions: 1
Published: over 7 years ago
10.3389/fcimb.2021.628887
Functional Mapping of AGO-Associated Zika Virus-Derived Small Interfering RNAs in Neural Stem CellsCited by: 11
Author(s): Jianxiong Zeng, Zhifei Luo, Shupeng Dong, Xing Xie, Xinyan Liang, Youzhen Yan, Qiming Liang, Zhen Zhao
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2021.670935
Trehalose-Induced Remodelling of the Human Microbiota Affects Clostridioides difficile Infection Outcome in an In Vitro Colonic Model: A Pilot StudyCited by: 17
Author(s): Anthony M. Buckley, Ines B Moura, Norie Arai, William Spittal, Emma Clark, Yoshihiro Nishida, Hannah Harris, Karen L. de Mesy Bentley, Georgina Davis, Dapeng Wang, Suparna Mitra, Takanobu Higashiyama, Mark H. Wilcox
Software Mentions: 1
Published: over 3 years ago
10.3389/fcell.2021.623394
Mutations in RNA Methyltransferase Gene NSUN5 Confer High Risk of Outflow Tract MalformationCited by: 5
Author(s): Yifeng Wang, Tao Jiang, Jiani Xu, Yayun Gu, Yan Zhou, Yuan Lin, Yifei Wu, Wei Li, Cheng Wang, Bin Shen, Xuming Mo, Xiaowei Wang, Bin Zhou, Chenyue Ding, Zhibin Hu
Software Mentions: 1
Published: over 3 years ago
10.3389/fcell.2020.553728
Geniposide Alleviates Oxidative Stress of Mice With Depression-Like Behaviors by Upregulating Six3os1Cited by: 18
Author(s): Tianyu Zou, Kazuo Sugimoto, Jielin Zhang, Yongxiu Liu, Yiming Zhang, Hao Liang, Yifeng Jiang, Jing Wang, Guoxiang Duan, Cheng Mei
Software Mentions: 1
Published: about 4 years ago
10.1093/gigascience/gix053
An expanded mammal mitogenome dataset from Southeast AsiaCited by: 23
Author(s): Faezah Mohd Salleh, Jazmín Ramos‐Madrigal, Fernando Peñaloza, Shanlin Liu, S Sinding Mikkel-Holger, P Patel Riddhi, Raquel A. Martins, Dorina Lenz, Jörns Fickel, Christian Roos, Mohd Shahir Shamsir, Mohammad Shahfiz Azman, Burton K. Lim, J. Stephen, Andreas Wilting, M. Thomas P. Gilbert
Software Mentions: 1
Published: over 7 years ago
10.3389/fcell.2021.645704
Mouse Retinal Organoid Growth and Maintenance in Longer-Term CultureCited by: 12
Author(s): Manuela Völkner, Thomas Kurth, Jana Schor, Lynn J. A. Ebner, Lara Bardtke, Cagri Kavak, Jörg Hackermüller, Mike O. Karl
Software Mentions: 1
Published: over 3 years ago
10.3389/fcell.2020.591629
Transcriptome-Wide m6A Methylation in Skin Lesions From Patients With Psoriasis VulgarisCited by: 21
Author(s): Yanan Wang, Hongzhong Jin
Software Mentions: 1
Published: about 4 years ago
10.3389/fcell.2020.00430
Disease Activity-Associated Alteration of mRNA m5 C Methylation in CD4+ T Cells of Systemic Lupus ErythematosusCited by: 42
Author(s): Gangqiang Guo, Huijing Wang, Xinyu Shi, Lele Ye, Kejing Yan, Zhiyuan Chen, Huidi Zhang, Zi‐Bing Jin, Xiangyang Xue
Software Mentions: 1
Published: over 4 years ago
10.3389/fnbeh.2017.00089
Evidence for Ancestral Programming of Resilience in a Two-Hit Stress ModelCited by: 18
Author(s): Jamshid Faraji, Nabiollah Soltanpour, Mirela Ambeskovic, Fabíola Cristina Ribeiro Zucchi, Pierre Beaumier, Igor Kovalchuk, Gerlinde A. S. Metz
Software Mentions: 1
Published: over 7 years ago
10.1093/gigascience/giaa087
Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platformCited by: 5
Author(s): Marcela Sandoval-Velasco, Juan Antonio Rodríguez, Cynthia Pérez Estrada, Guojie Zhang, E Aiden, Marc A. Martı́-Renom, M. Thomas P. Gilbert, Oliver Smith
Software Mentions: 1
Published: over 4 years ago
10.3389/fnagi.2020.511562
Gut Microbiome Signatures Are Biomarkers for Cognitive Impairment in Patients With Ischemic StrokeCited by: 47
Author(s): Yi Liu, Tianyu Gong, Junmei Zhang, Qilu Gu, Xinxin Gao, Xiongpeng Weng, Jiaming Liu, Jing Sun
Software Mentions: 1
Published: about 4 years ago
10.1080/19490976.2020.1801964
A compromised developmental trajectory of the infant gut microbiome and metabolome in atopic eczemaCited by: 47
Author(s): Le Duc Huy Ta, James Chun Yip Chan, Gaik Chin Yap, Rikky W. Purbojati, Daniela I. Drautz–Moses, Yanqing Koh, Carina Jing Xuan Tay, Chiung Hui Huang, Dorinda Yan Qin Kioh, Jia Yun Woon, Elizabeth Huiwen Tham, Evelyn Xiu Ling Loo, Lynette Pei‐Chi Shek, Neerja Karnani, Angela Goh, Hugo P.S. Van Bever, Oon Hoe Teoh, Yiong Huak Chan, Christophe Lay, Jan Knol, Fabian Yap, Kok Hian Tan, Yap Seng Chong, Keith M. Godfrey, Staffan Kjelleberg, Stephan C. Schuster, Eric Chun Yong Chan, Bee Wah Lee
Software Mentions: 1
Published: about 4 years ago
10.1038/s12276-020-0470-5
Analysis of the human breast milk microbiome and bacterial extracellular vesicles in healthy mothersCited by: 35
Author(s): Su Yeong Kim, Dae Yong Yi
Software Mentions: 1
Published: over 4 years ago
10.1038/s12276-020-0469-y
Fecal microbial transplantation and a high fiber diet attenuates emphysema development by suppressing inflammation and apoptosisCited by: 39
Author(s): Yoon Ok Jang, Se Hee Lee, Jong Jin Choi, Do Hyun Kim, Je-Min Choi, Min Jong Kang, Yeon Mok Oh, Young Jun Park, Yoo Seob Shin, Sei Won Lee
Software Mentions: 1
Published: over 4 years ago
10.1038/hortres.2017.20
Additive QTLs on three chromosomes control flowering time in woodland strawberry (Fragaria vesca L.)Cited by: 20
Author(s): Samia Samad, Takeshi Kurokura, Essi V. Koskela, Tuomas Toivainen, Vipul Patel, Katriina Mouhu, Daniel J. Sargent, Timo Hytönen
Software Mentions: 1
Published: over 7 years ago
10.1002/advs.201903727
Germline Polymorphisms and Length of Survival of Nasopharyngeal Carcinoma: An Exome‐Wide Association Study in Multiple CohortsCited by: 12
Author(s): Yun‐Miao Guo, Jie‐Rong Chen, Yang Feng, Melvin L.K. Chua, Yanni Zeng, Edwin P. Hui, Allen Chan, Lin‐Quan Tang, Lin Wang, Qian Cui, Huiqiong Han, Chunling Luo, Guo‐Wang Lin, Yan Liang, Yang Liu, Z. He, Yu‐Xiang Liu, Panpan Wei, Chu‐Jun Liu, Peng Wan, Bo‐Wei Han, Xiaoyu Zuo, Enya Hui Wen Ong, Eugenia Li Ling Yeo, Kay Soon Low, Gek San Tan, Tony Kiat Hon Lim, Jacqueline Siok Gek Hwang, Bo Li, Feng Qian, Xiaojun Xia, Yunfei Xia, Josephine Mun Yee Ko, Wei Dai, Maria Li Lung, Anthony Tak-cheung Chan, Dennis Lo, Mu‐Sheng Zeng, Hai‐Qiang Mai, Jianjun Li, Yi‐Xin Zeng, Jin‐Xin Bei
Software Mentions: 1
Published: over 4 years ago
10.1186/s13068-018-1278-6
Effect of pH and temperature on microbial community structure and carboxylic acid yield during the acidogenic digestion of duckweedCited by: 24
Author(s): Özgül Calicioglu, Michael J. Shreve, Tom L. Richard, Rachel A. Brennan
Software Mentions: 1
Published: about 6 years ago
10.1038/s12276-020-00487-6
Association between the microbiomes of tonsil and saliva samples isolated from pediatric patients subjected to tonsillectomy for the treatment of tonsillar hyperplasiaCited by: 7
Author(s): Da Hyeon Choi, Ji Won Park, Ju Kwang Choi, Kyeong Eun Lee, Won Hee Lee, Jinho Yang, Ju‐Yeon Lee, Yoon Jeong Park, Chahyun Oh, Ho-Ryun Won, Bon Seok Koo, Jae Won Chang, Yoon Shin Park
Software Mentions: 1
Published: about 4 years ago
10.1038/s12276-020-0458-1
Association between the sinus microbiota with eosinophilic inflammation and prognosis in chronic rhinosinusitis with nasal polypsCited by: 14
Author(s): Ji Heui Kim, Sung Hee Kim, Ji Youn Lim, Doyeon Kim, In Seong Jeong, Dong Kyu Lee, Yong Ju Jang
Software Mentions: 1
Published: over 4 years ago
10.1200/PO.19.00014
Evaluation of Commercial Circulating Tumor DNA Test in Metastatic Prostate CancerCited by: 22
Author(s): Sinja Taavitsainen, Matti Annala, Elisa M. Ledet, Kevin Beja, Patrick J. O. Miller, Marcus W. Moses, Matti Nykter, Kim N., Oliver Sartor, Alexander W. Wyatt
Software Mentions: 1
Published: almost 5 years ago
10.1111/evo.13150
The ultimate and proximate mechanisms driving the evolution of long tails in forest deer miceCited by: 22
Author(s): Evan P. Kingsley, Krzysztof M. Kozak, Susanne Pfeifer, Dou‐Shuan Yang, Hopi E. Hoekstra
Software Mentions: 1
Published: almost 8 years ago
10.7554/eLife.03696
The neural crest is a source of mesenchymal stem cells with specialized hematopoietic stem cell niche functionCited by: 229
Author(s): Joan Isern, Andrés García‐García, Ana María Díaz Martín, Lorena Arranz, Daniel Martín-Pérez, Carlos Torroja, Fátima Sánchez-Cabo, Simón Méndez-Ferrer
Software Mentions: 1
Published: about 10 years ago
10.1038/ejhg.2015.281
Genomic complexity of urothelial bladder cancer revealed in urinary cfDNACited by: 106
Author(s): Fiona S. Togneri, Douglas G. Ward, Joseph Foster, Adam J. Devall, Paula Wojtowicz, Sofia Alyas, Fabiana Ramos Vasques, Assa Oumie, Nicholas D. James, Kar Keung Cheng, Maurice P. Zeegers, Nayneeta Deshmukh, B. O’Sullivan, Philippe Tanière, Karen G. Spink, Dominic McMullan, Mike Griffiths, Richard T. Bryan
Software Mentions: 1
Published: almost 9 years ago
10.1042/BSR20170768
MicroRNA sequence analysis identifies microRNAs associated with peri-implantitis in dogsCited by: 20
Author(s): Xiaolin Wu, Xipeng Chen, Wenxiang Mi, Tingting Wu, Qinhua Gu, Hui Huang
Software Mentions: 1
Published: about 7 years ago
10.3390/biomedicines6020041
Transcriptome Analysis of Acute Phase Liver Graft Injury in Liver TransplantationCited by: 5
Author(s): Nikki P. Lee, Haiyang Wu, Kevin Tak‐Pan Ng, Ruibang Luo, Tak Wah Lam, Chung‐Mau Lo, Kwan Man
Software Mentions: 1
Published: over 6 years ago
10.1186/s13072-018-0209-x
HAM-TBS: high-accuracy methylation measurements via targeted bisulfite sequencingCited by: 16
Author(s): Simone Roeh, Tobias Wiechmann, Susann Sauer, Maik Ködel, Elisabeth B. Binder, Nadine Provençal
Software Mentions: 1
Published: over 6 years ago
10.1111/jcmm.13940
Analysis of changes to lncRNAs and their target mRNAs in murine jejunum after radiation treatmentCited by: 8
Author(s): Qianying Lu, Wei Gong, Jinhan Wang, Kaihua Ji, Xinwei Sun, Chang Xu, Liqing Du, Yan Wang, Qiang Liu
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-017-02880-0
Gut Dysbiosis and Neurobehavioral Alterations in Rats Exposed to Silver NanoparticlesCited by: 87
Author(s): Angela B. Javurek, Dhananjay Suresh, William G. Spollen, Marcia L. Hart, Sarah A. Hansen, Mark R. Ellersieck, Nathan J. Bivens, Scott A. Givan, Anandhi Upendran, Raghuraman Kannan, Cheryl S. Rosenfeld
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-020-59529-8
Colorectal cancer diagnostic model utilizing metagenomic and metabolomic data of stool microbial extracellular vesiclesCited by: 53
Author(s): Da Jung Kim, Jinho Yang, Ho-Chan Seo, Won Hee Lee, Dong Hoon Lee, Sungmin Kym, Young Soo Park, Jae Gyu Kim, In Jin Jang, Yoon Keun Kim, Joo Youn Cho
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-019-49065-5
A new species in the major malaria vector complex sheds light on reticulated species evolutionCited by: 54
Author(s): Maite G. Barrón, Christophe Paupy, Nil Rahola, Ousman Akone‐Ella, Marc F. Ngangue, Theodel A. Wilson-Bahun, Marco Pombi, Pierre Kengne, Carlo Costantini, Frédéric Simard, Josefa González, Diégo Ayala
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-017-06256-2
Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coliCited by: 90
Author(s): Nicole Stoesser, Anna E. Sheppard, Gisele Peirano, LW Anson, Louise Pankhurst, Robert Sebra, Hang Phan, Andrew Kasarskis, Amy J Mathers, Timothy E. A. Peto, Patricia A. Bradford, Mary Motyl, A. Sarah Walker, Derrick W. Crook, Johann Pitout
Software Mentions: 1
Published: over 7 years ago
10.1038/srep31326
The genetics of an early Neolithic pastoralist from the Zagros, IranCited by: 57
Author(s): Marcos Gallego Llorente, Sarah Connell, Eppie R. Jones, DC Merrett, Yeonsu Jeon, Anders Eriksson, Veronika Siska, Cristina Gamba, Christopher Meiklejohn, Robert Beyer, Sungwon Jeon, Yun Sang Cho, Michael Hofreiter, Jihun Bhak, Andrea Manica, Ron Pinhasi
Software Mentions: 1
Published: over 8 years ago
10.1038/srep25719
Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditionsCited by: 56
Author(s): Yingyu Law, Rasmus Hansen Kirkegaard, Angel Anisa Cokro, Xianghui Liu, Krithika Arumugam, Chao Xie, Mikkel Stokholm-Bjerregaard, Daniela I. Drautz–Moses, Per Halkjær Nielsen, Stefan Wuertz, Rohan B. H. Williams
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-22473-9
A simple and robust real-time qPCR method for the detection of PIK3CA mutationsCited by: 25
Author(s): Virginia Álvarez‐García, Clare Bartos, Ieva Keraite, Urmi Trivedi, Paul M. Brennan, Maïwenn Kersaudy-Kerhoas, Karim Gharbi, Olga Oikonomidou, Nicholas R. Leslie
Software Mentions: 1
Published: over 6 years ago
10.1080/0886022X.2021.1979040
Identification of circular RNA expression profiles in renal fibrosis induced by obstructive injuryCited by: 5
Author(s): Jiangju Huang, Zhihao Zhang, Benquan Liu, Ying Gao, Jiayi Nie, Sijian Wen, Xiaomin Lai, Hua Liu
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-018-22617-x
A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathwaysCited by: 66
Author(s): Siavash Atashgahi, Bastian Hornung, Marcelle J. van der Waals, Ulisses Nunes da Rocha, Floor Hugenholtz, Bart Nijsse, Douwe Molenaar, Rob J.M. van Spanning, Alfons Johannes Maria Stams, Jan Gerritse, Hauke Smidt
Software Mentions: 1
Published: over 6 years ago
10.1007/s43032-020-00175-w
Expression of Stromal Progesterone Receptor and Differential Methylation Patterns in the Endometrium May Correlate with Response to Progesterone Therapy in Endometrial Complex Atypical HyperplasiaCited by: 5
Author(s): Adam Neal, M.I. Núñez, Tiffany Lai, Anela Tosevska, Marco Morselli, M. Amneus, Mae Zakhour, Neda A. Moatamed, Matteo Pellegrini, Sanaz Memarzadeh
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-019-53283-2
Time-coursed transcriptome analysis identifies key expressional regulation in growth cessation and dormancy induced by short days in PaulowniaCited by: 9
Author(s): Jiayuan Wang, Hongyan Wang, Tao Deng, Zhen Liu, Xuewen Wang
Software Mentions: 1
Published: about 5 years ago
10.1038/srep46037
Intestinal microbiota link lymphopenia to murine autoimmunity via PD-1+CXCR5−/dim B-helper T cell inductionCited by: 16
Author(s): Toshiki Eri, K. Kawahata, Takeyuki Kanzaki, Mitsuru Imamura, Koji Michishita, Lisa Akahira, Ei Bannai, Noritada Yoshikawa, Yoshinobu Kimura, Takeshi Satoh, Satoshi Uematsu, Hirotoshi Tanaka, Kazuhiko Yamamoto
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-12715-7
EUF1 – a newly identified gene involved in erythritol utilization in Yarrowia lipolyticaCited by: 22
Author(s): Dorota A. Rzechonek, Cécile Neuvéglise, Hugo Devillers, Waldemar Rymowicz, Aleksandra M. Mirończuk
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-019-41772-3
Extracellular small non-coding RNA contaminants in fetal bovine serum and serum-free mediaCited by: 23
Author(s): Bettina Mannerström, Riku O. Paananen, Ahmed G. Abu-Shahba, Jukka Moilanen, Riitta Seppänen‐Kaijansinkko, Sippy Kaur
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-56662-x
Type-2 Diabetics Reduces Spatial Variation of Microbiome Based on Extracellular Vesicles from Gut Microbes across Human BodyCited by: 19
Author(s): Geumkyung Nah, Sang-Cheol Park, Kangjin Kim, Sung-Min Kim, Jaehyun Park, Sanghun Lee, Sungho Won
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-017-18091-6
Enrichment of megabase-sized DNA molecules for single-molecule optical mapping and next-generation sequencingCited by: 5
Author(s): Joanna Lopacinska-Jørgensen, Jonas Nyvold Pedersen, Mads Bak, Mana M. Mehrjouy, Kristian Tølbøl Sørensen, Peter Friis Østergaard, Brian Bilenberg, Anders Kristensen, Rafael J. Taboryski, Henrik Flyvbjerg, Rodolphe Marie, Niels Tommerup, Asli N. Silahtaroglu
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12977-018-0426-1
Quantitation of the latent HIV-1 reservoir from the sequence diversity in viral outgrowth assaysCited by: 6
Author(s): Art F. Y. Poon, Jessica L. Prodger, Briana Lynch, Jun Lai, Steven J. Reynolds, Jingo Kasule, Adam A. Capoferri, Susanna L. Lamers, Christopher W. Rodriguez, Daniel Bruno, Stephen F. Porcella, Craig Martens, Thomas C. Quinn, Andrew D. Redd
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-017-09334-7
De novo transcriptome assembly for the spiny mouse (Acomys cahirinus)Cited by: 33
Author(s): Jared Mamrot, Roxane Legaie, Stacey J. Ellery, Trevor Wilson, Torsten Seemann, David Powell, David K. Gardner, David W. Walker, Peter Temple-Smith, Anthony T. Papenfuss, Hayley Dickinson
Software Mentions: 1
Published: over 7 years ago
10.1038/srep43552
Genetic architecture of threshold reaction norms for male alternative reproductive tactics in Atlantic salmon (Salmo salar L.)Cited by: 25
Author(s): Olivier Lepais, Aurélie Manicki, Stéphane Glise, Mathieu Buoro, Agnès Bardonnet
Software Mentions: 1
Published: over 7 years ago
10.1038/srep09086
Rapid genome resequencing of an atoxigenic strain of Aspergillus carbonariusCited by: 14
Author(s): F. Javier Cabañes, Walter Sanseverino, G. Castellá, M.R. Bragulat, Riccardo Aiese Cigliano, Armand Sánchez
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-019-44708-z
Uncovering of natural allelic variants of key yield contributing genes by targeted resequencing in rice (Oryza sativa L.)Cited by: 4
Author(s): Lakshminarayana R. Vemireddy, Gopalakrishnamurty Kadambari, Gautam Reddy, Vijaya Sudhakara Rao Kola, Eswarayya Ramireddy, Venkata Ramana Rao Puram, Jyothi Badri, Suresh N. Eslavath, Swarajyalakshmi N. Bollineni, B. Jeevula Naik, Sreelakshmi Chintala, Rameshbabu Pottepalem, A. Srividhya, Ranjithkumar Nagireddy, V. B. Reddy Lachagari, Reddaiah Bodanapu, Sivarama Prasad Lekkala, Navajeet Chakravartty, E. A. Siddiq
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-44638-w
Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic CasesCited by: 26
Author(s): Daniel Gaudio, Daniel Fernandes, Ryan Schmidt, Olivia Cheronet, Debora Mazzarelli, Mirko Mattia, Tadhg O’Keeffe, Robin N. M. Feeney, Cristina Cattaneo, Ron Pinhasi
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-45131-0
Assessment of low-coverage nanopore long read sequencing for SNP genotyping in doubled haploid canola (Brassica napus L.)Cited by: 21
Author(s): M. Michelle Malmberg, Germán Spangenberg, Hans D. Daetwyler, Noel O. I. Cogan
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-45210-2
High-Resolution Copy Number Patterns From Clinically Relevant FFPE MaterialCited by: 5
Author(s): Anastasia Filia, Alastair Droop, Mark Harland, Helene Thygesen, Juliette Randerson-Moor, Helen Snowden, Claire Taylor, Joey Mark S. Diaz, Joanna Poźniak, Jérémie Nsengimana, Jonathan P. Laye, Julia Newton-Bishop, D. Timothy Bishop
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-018-19198-0
Mutations in bassoon in individuals with familial and sporadic progressive supranuclear palsy-like syndromeCited by: 22
Author(s): Ichiro Yabe, Hiroaki Yaguchi, Yasutaka Kato, Yasuo Miki, Hidehisa Takahashi, Satoshi Tanikawa, Shinichi Shirai, Ikuko Takahashi, Mari Kimura, Yuka Hama, Masaaki Matsushima, Shinsuke Fujioka, Takahiro Kano, Masashi Watanabe, Shin Nakagawa, Y Kunieda, Yoshio Ikeda, Masato Hasegawa, Hiroshi Nishihara, Toshihisa Ohtsuka, Shinya Tanaka, Yoshio Tsuboi, Susumi Hatakeyama, Keiji Wakabayashi, Hidenao Sasaki
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-019-47439-3
High prevalence of the MLH1 V384D germline mutation in patients with HER2-positive luminal B breast cancerCited by: 14
Author(s): Seung Eun Lee, Hye Seung Lee, Kyoung-Yeon Kim, Jung Hoon Park, Hanseong Roh, Ha Young Park, Wan-Seop Kim
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-58324-9
Evaluation of the population structure and phylogeography of the Japanese Genji firefly, Luciola cruciata, at the nuclear DNA level using RAD-Seq analysisCited by: 12
Author(s): Dai‐ichiro Kato, Hirobumi Suzuki, Atsuhiro Tsuruta, Juri Maeda, Yoshinobu Hayashi, Kazunari Arima, Yuji Ito, Yukio Nagano
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-018-23478-0
Cellular response to persistent foot-and-mouth disease virus infection is linked to specific types of alterations in the host cell transcriptomeCited by: 20
Author(s): Lingling Han, Xiu Xin, Hailong Wang, Jiadai Li, Yanling Hao, Mingzhen Wang, Chengchao Zheng, Chao Shen
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-58659-3
Resistance to change: AMR gene dynamics on a commercial pig farm with high antimicrobial usageCited by: 32
Author(s): Jolinda Pollock, Adrian Muwonge, Michael R. Hutchings, Geoffrey Mainda, Barend M. deC. Bronsvoort, David L. Gally, Alexander Corbishley
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-018-26524-z
Molecular Diagnosis of 34 Japanese Families with Leber Congenital Amaurosis Using Targeted Next Generation SequencingCited by: 32
Author(s): Katsuhiro Hosono, Sachiko Nishina, Tadashi Yamaguchi, Satoshi Katagiri, Hirotomo Saitsu, Kentaro Kurata, Daisuke Miyamichi, Akiko Hikoya, Kei Mizobuchi, Tadashi Nakano, Shinsei Minoshima, Maki Fukami, Hiroyuki Kondo, M. Sato, Takaaki Hayashi, Noriyuki Azuma, Yoshihiro Hotta
Software Mentions: 1
Published: over 6 years ago