Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: custom

https://packages.ecosyste.ms/registries/pypi.org/packages/custom

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Latest release: about 8 years ago
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Papers Mentioning custom 1,363

10.1371/journal.pone.0101683
High-Throughput Targeted Repeat Element Bisulfite Sequencing (HT-TREBS): Genome-Wide DNA Methylation Analysis of IAP LTR Retrotransposon
Cited by: 19
Author(s): Muhammad B. Ekram, Joomyeong Kim
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0195471
Performance comparison of three DNA extraction kits on human whole-exome data from formalin-fixed paraffin-embedded normal and tumor samples
Cited by: 35
Author(s): Eric Bonnet, Marie-Laure Moutet, Céline Baulard, Delphine Bacq‐Daian, Florian Sandron, Lilia Mesrob, Bertrand Fin, Marc Delépine, Marie-Ange Palomares, Claire Jubin, Hélène Blanché, Vincent Meyer, Anne Boland, Robert Olaso, Jean‐François Deleuze
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2018.02316
Differential Brain MicroRNA Expression Profiles After Acute and Chronic Infection of Mice With Toxoplasma gondii Oocysts
Cited by: 23
Author(s): Rui-Si Hu, Jun-Jun He, Hany M. Elsheikha, Fu-Kai Zhang, Yang Zou, Guang‐Hui Zhao, Wei Cong, Xing‐Quan Zhu
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0080961
De Novo Assembly of the Transcriptome of the Non-Model Plant Streptocarpus rexii Employing a Novel Heuristic to Recover Locus-Specific Transcript Clusters
Cited by: 21
Author(s): Matteo Chiara, David S. Horner, Alberto Spada
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0210093
The Mediterranean as a melting pot: Phylogeography of Loxosceles rufescens (Sicariidae) in the Mediterranean Basin
Cited by: 4
Author(s): Marc Massa, Enric Planas, Carles Ribera
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0015092
Efficient Double Fragmentation ChIP-seq Provides Nucleotide Resolution Protein-DNA Binding Profiles
Cited by: 40
Author(s): Michal Mokrý, Pantelis Hatzis, Ewart de Bruijn, Jan Koster, Rogier Versteeg, Jurian Schuijers, Marc van de Wetering, Victor Guryev, Hans Clevers, Edwin Cuppen
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0084785
Assessment of Whole Genome Amplification for Sequence Capture and Massively Parallel Sequencing
Cited by: 9
Author(s): Johanna Hasmats, Henrik Gréen, Cédric Oréar, Pierre Validire, Mikael Huss, Max Käller, Joakim Lundeberg
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0226719
Fast and accurate quantification of insertion-site specific transgene levels from raw seed samples using solid-state nanopore technology
Cited by: 3
Author(s): Michael D. Pearson, Leslee T. Nguyen, Yanan Zhao, William L. McKenna, Trevor J. Morin, William B. Dunbar
Software Mentions: 1
Published: almost 5 years ago
10.1186/1471-2164-12-268
Analysis of common bean expressed sequence tags identifies sulfur metabolic pathways active in seed and sulfur-rich proteins highly expressed in the absence of phaseolin and major lectins
Cited by: 34
Author(s): Fuqiang Yin, Agnieszka Pająk, Ralph Chapman, Andrew Sharpe, Shangzhi Huang, Frédéric Marsolais
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0135076
Association of SNPs in EGR3 and ARC with Schizophrenia Supports a Biological Pathway for Schizophrenia Risk
Cited by: 40
Author(s): Matthew J. Huentelman, Leela Muppana, Jason J. Corneveaux, Valentin Dinu, Jeremy J. Pruzin, Rebecca Reiman, Cassie N. Borish, Matt De Both, Amber Sabeen Ahmed, Alexandre A. Todorov, C. Robert Cloninger, Rui Zhang, Jianhua Ma, Amelia L. Gallitano
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0061376
Effect of Aging on Hedonic Appreciation of Pleasant and Unpleasant Odors
Cited by: 43
Author(s): Pauline Joussain, M Thévenet, Catherine Rouby, Moustafa Bensafi
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pntd.0007257
Marburg virus disease outbreak in Kween District Uganda, 2017: Epidemiological and laboratory findings
Cited by: 36
Author(s): Luke Nyakarahuka, Trevor Shoemaker, Stephen Balinandi, Godfrey Chemos, Benon Kwesiga, Sophia Mulei, Jackson Kyondo, Alex Tumusiime, Aaron Kofman, Ben Masiira, Shannon Whitmer, Shelley Brown, Debi Cannon, Cheng‐Feng Chiang, James Graziano, Maria Morales-Betoulle, Ketan Patel, Sara Zufan, Innocent Komakech, Nasan Natseri, Philip Musobo Chepkwurui, Bernard Lubwama, Jude Okiria, Joshua Kayiwa, Innocent Harbert Nkonwa, Patricia Eyu, Lydia Nakiire, Edward Chelangat Okarikod, Leonard Cheptoyek, Barasa Emmanuel Wangila, Michael Wanje, Patrick Tusiime, Lilian Bulage, Henry Mwebesa, Alex Riolexus Ario, Issa Makumbi, Anne Nakinsige, Allan Muruta, Miriam Nanyunja, Jaco Homsy, Bao–Ping Zhu, Lisa Nelson, Pontiano Kaleebu, Pierre E. Rollin, Stuart T. Nichol, John D. Klena, Julius J. Lutwama
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2021.646567
Characterization of the Complete Mitochondrial Genome of Basidiomycete Yeast Hannaella oryzae: Intron Evolution, Gene Rearrangement, and Its Phylogeny
Cited by: 21
Author(s): Qiang Li, Lijiao Li, Huiyu Feng, Wenying Tu, Zhijie Bao, Chuan Xiong, Xu Wang, Qing Yuan, Wenli Huang
Software Mentions: 1
Published: over 3 years ago
10.1088/1361-6463/aaf944
All-optical crosstalk-free manipulation and readout of Chronos-expressing neurons
Cited by: 11
Author(s): Navjeevan S Soor, Peter Quicke, Carmel L. Howe, Kuin Tian Pang, Mark A. A. Neil, Simon R. Schultz, Amanda J. Foust
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pntd.0002839
A Genome-Wide Analysis of Genetic Diversity in Trypanosoma cruzi Intergenic Regions
Cited by: 9
Author(s): Leonardo G. Panunzi, Fernán Agüero
Software Mentions: 1
Published: over 10 years ago
10.3389/fncir.2012.00076
Dopaminergic modulation of synaptic transmission and neuronal activity patterns in the zebrafish homolog of olfactory cortex
Cited by: 12
Author(s): Yan-Ping Zhang Schärer, Jennifer Shum, Anastasios Moressis, Rainer W. Friedrich
Software Mentions: 1
Published: almost 13 years ago
10.1186/1471-2164-14-696
MicroRNA-146 function in the innate immune transcriptome response of zebrafish embryos to Salmonella typhimurium infection
Cited by: 87
Author(s): Anita Ordas, Zakia Kanwal, Valesca Lindenberg, Julien Rougeot, Mátyás Mink, Herman P. Spaink, Annemarie H. Meijer
Software Mentions: 1
Published: about 11 years ago
10.1007/s00232-016-9913-2
UCP3 Regulates Single-Channel Activity of the Cardiac mCa1
Cited by: 10
Author(s): Lukas J. Motloch, Tina Gebing, Sara Reda, Astrid Schwaiger, Martin Wolny, Uta C. Hoppe
Software Mentions: 1
Published: over 8 years ago
10.3389/fneur.2019.01353
Intracochlear Perfusion of Tumor Necrosis Factor-Alpha Induces Sensorineural Hearing Loss and Synaptic Degeneration in Guinea Pigs
Cited by: 20
Author(s): Sachiyo Katsumi, Mehmet İlhan Şahin, Rebecca Lewis, Janani Iyer, Lukas D. Landegger, Konstantina M. Stanković
Software Mentions: 1
Published: almost 5 years ago
10.3389/fneur.2021.676352
Robotic Shoulder Rehabilitation With the Hybrid Assistive Limb in a Patient With Delayed Recovery After Postoperative C5 Palsy: A Case Report
Cited by: 4
Author(s): Shigeki Kuzuhara, Hideki Kadone, Yoshiki Shimizu, Hiroshi Takahashi, Masao Koda, K. Miura, Hiroki Watanabe, Kenji Suzuki, Yasushi Hada, Yoshiyuki Sankai, Masashi Yamazaki
Software Mentions: 1
Published: about 3 years ago
10.3389/fneur.2020.00706
Refining Planning for Stereoelectroencephalography: A Prospective Validation of Spatial Priors for Computer-Assisted Planning With Application of Dynamic Learning
Cited by: 4
Author(s): Vejay N. Vakharia, Rachel Sparks, Alejandro Granados, Anna Miserocchi, Andrew W. McEvoy, Sébastien Ourselin, John S. Duncan
Software Mentions: 1
Published: over 4 years ago
10.3389/fnins.2019.00332
Multilevel Mapping of Sexual Dimorphism in Intrinsic Functional Brain Networks
Cited by: 20
Author(s): Nina de Lacy, Elizabeth McCauley, J. Nathan Kutz, Vince D. Calhoun
Software Mentions: 1
Published: over 5 years ago
10.1098/rsif.2014.0400
The role of mechanical forces in the planar-to-bulk transition in growing <i>Escherichia coli</i> microcolonies
Cited by: 93
Author(s): Matthew A. A. Grant, Bartłomiej Wacław, Rosalind J. Allen, Pietro Cicuta
Software Mentions: 1
Published: over 10 years ago
10.3389/fnins.2016.00083
Cortical Axons, Isolated in Channels, Display Activity-Dependent Signal Modulation as a Result of Targeted Stimulation
Cited by: 16
Author(s): Marta Lewandowska, Miloš Radivojević, David Jäckel, Jan Müller, Andreas Hierlemann
Software Mentions: 1
Published: over 8 years ago
10.3389/fnins.2019.00516
Sparse Sampling of Silence Type I Errors With an Emphasis on Primary Auditory Cortex
Cited by: 5
Author(s): Francis A. M. Manno, Juan Fernández-Ruíz, Sinai H. C. Manno, Shuk Han Cheng, Condon Lau, Fernando A. Barrios
Software Mentions: 1
Published: over 5 years ago
10.3389/fnins.2019.00873
Decreased Cross-Domain Mutual Information in Schizophrenia From Dynamic Connectivity States
Cited by: 10
Author(s): Mustafa Salman, Victor M. Vergara, Eswar Damaraju, Vince D. Calhoun
Software Mentions: 1
Published: over 5 years ago
10.3389/fnins.2019.01088
Musical Role Asymmetries in Piano Duet Performance Influence Alpha-Band Neural Oscillation and Behavioral Synchronization
Cited by: 10
Author(s): Auriel Washburn, Iran R. Roman, Madeline Huberth, Nick Gang, Tysen Dauer, Wisam Reid, Chryssie Nanou, Matthew Wright, Takako Fujioka
Software Mentions: 1
Published: about 5 years ago
10.3389/fnins.2019.01404
Altered Biogenesis and MicroRNA Content of Hippocampal Exosomes Following Experimental Status Epilepticus
Cited by: 21
Author(s): Aasia Batool, Thomas Hill, N.T. Nguyen, Elena Langa, Mairéad Diviney, Catherine Mooney, Gary P. Brennan, Niamh M. C. Connolly, Amaya Sanz‐Rodriguez, Brenton Cavanagh, David C. Henshall
Software Mentions: 1
Published: almost 5 years ago
10.3389/fnins.2014.00159
Larger neural responses produce BOLD signals that begin earlier in time
Cited by: 16
Author(s): Serena Thompson, Stephen A. Engel, Cheryl A. Olman
Software Mentions: 1
Published: over 10 years ago
10.3389/fnins.2016.00001
Assessing Neurocognition via Gamified Experimental Logic: A Novel Approach to Simultaneous Acquisition of Multiple ERPs
Cited by: 11
Author(s): A. K. Nair, Arun Sasidharan, John P. John, Seema Mehrotra, Bindu M. Kutty
Software Mentions: 1
Published: almost 9 years ago
10.3389/fnins.2018.00406
Rolling Motion Along an Incline: Visual Sensitivity to the Relation Between Acceleration and Slope
Cited by: 17
Author(s): Francesca Ceccarelli, Barbara La Scaleia, Marta Russo, Benedetta Cesqui, Silvio Gravano, Maura Mezzetti, Alessandro Moscatelli, Andrea d’Avella, Francesco Lacquaniti, Myrka Zago
Software Mentions: 1
Published: over 6 years ago
10.3389/fnins.2021.633955
Prolonged Exposure to Social Stress Impairs Homeostatic Sleep Regulation
Cited by: 9
Author(s): Basma Radwan, Alvaro Yanez Touzet, Soaad Hammami, Dipesh Chaudhury
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pmed.1001890
Monitoring Pharmacologically Induced Immunosuppression by Immune Repertoire Sequencing to Detect Acute Allograft Rejection in Heart Transplant Patients: A Proof-of-Concept Diagnostic Accuracy Study
Cited by: 21
Author(s): Christopher Vollmers, Iwijn De Vlaminck, Hannah A. Valantine, Lolita Penland, Helen Luikart, Calvin Strehl, Garrett Cohen, Kiran K. Khush, Stephen R. Quake
Software Mentions: 1
Published: about 9 years ago
10.7554/eLife.63163
Sensory coding and the causal impact of mouse cortex in a visual decision
Cited by: 46
Author(s): Peter Zatka-Haas, Nicholas A. Steinmetz, Matteo Carandini, Kenneth D. Harris
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pgen.1003823
Both Rare and De Novo Copy Number Variants Are Prevalent in Agenesis of the Corpus Callosum but Not in Cerebellar Hypoplasia or Polymicrogyria
Cited by: 69
Author(s): Samin A. Sajan, Liliana Fernández, Sahar Esmaeeli Nieh, Eric Rider, Polina Bukshpun, Mari Wakahiro, Susan L. Christian, Jean Baptiste Rivière, Christopher T. Sullivan, Jyotsna Sudi, Michael J. Herriges, Alexander R. Paciorkowski, A. James Barkovich, Joseph T. Glessner, Kathleen J. Millen, Hákon Hákonarson, William B. Dobyns, Elliott H. Sherr
Software Mentions: 1
Published: about 11 years ago
10.3389/fnins.2018.00309
Source-Modeling Auditory Processes of EEG Data Using EEGLAB and Brainstorm
Cited by: 77
Author(s): Maren Stropahl, Anna‐Katharina R. Bauer, Stefan Debener, Martin G. Bleichner
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pgen.0020091
Genetic Screens for Mutations Affecting Development of Xenopus tropicalis
Cited by: 67
Author(s): Tadahiro Goda, Anita Abu-Daya, Samantha Carruthers, Matthew D. Clark, Derek L. Stemple, Lyle B. Zimmerman
Software Mentions: 1
Published: over 18 years ago
10.7554/eLife.25690
Fast two-photon imaging of subcellular voltage dynamics in neuronal tissue with genetically encoded indicators
Cited by: 152
Author(s): Simon Chamberland, Yang Hh, Michael Pan, Stephen W Evans, Sihui Guan, Mariya Chavarha, Ying‐Wei Yang, Charleen Salesse, Haodi Wu, Joseph C. Wu, Thomas R. Clandinin, Katalin Tóth, Michael Z. Lin, François St-Pierre
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pgen.1003078
Polyadenylation-Dependent Control of Long Noncoding RNA Expression by the Poly(A)-Binding Protein Nuclear 1
Cited by: 133
Author(s): Yves B. Beaulieu, Claudia L. Kleinman, Anne-Marie Landry-Voyer, Jacek Majewski, François Bachand
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pgen.1007400
Spontaneous gain of susceptibility suggests a novel mechanism of resistance to hybrid dysgenesis in Drosophila virilis
Cited by: 7
Author(s): S. Yu. Funikov, Д. А. Куликова, George S. Krasnov, Alexander P. Rezvykh, Lubov N. Chuvakova, N. G. Shostak, E. S. Zelentsova, Justin P. Blumenstiel, Michael B. Evgen’ev
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-019-5784-0
Re-evaluation of the role of Indian germplasm as center of melon diversification based on genotyping-by-sequencing analysis
Cited by: 30
Author(s): María José Gonzalo, Aurora Díaz, N.S. Dhillon, Umesh K. Reddy, Belén Picó, Antonio J. Monforte
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pgen.1009322
Limiting DNA polymerase delta alters replication dynamics and leads to a dependence on checkpoint activation and recombination-mediated DNA repair
Cited by: 7
Author(s): Natasha C. Koussa, Duncan J. Smith
Software Mentions: 1
Published: almost 4 years ago
10.3389/fphys.2018.01338
Association Between Phase Coupling of Respiratory Sinus Arrhythmia and Slow Wave Brain Activity During Sleep
Cited by: 13
Author(s): Kyuichi Niizeki, Tomoko Saitoh
Software Mentions: 1
Published: about 6 years ago
10.3389/fphys.2019.01105
Acetylcholine Delays Atrial Activation to Facilitate Atrial Fibrillation
Cited by: 17
Author(s): Jason D. Bayer, Bastiaan J. Boukens, Sébastien P.J. Krul, Caroline Roney, Antoine H.G. Driessen, Wouter R. Berger, Nicoline W. E. van den Berg, Arie O. Verkerk, Edward J. Vigmond, Ruben Coronel, Joris R. de Groot
Software Mentions: 1
Published: about 5 years ago
10.3389/fphys.2018.01424
Long-Term High-Density Extracellular Recordings Enable Studies of Muscle Cell Physiology
Cited by: 8
Author(s): Marta Lewandowska, Evgenii Bogatikov, Andreas Hierlemann, Anna Rostedt Punga
Software Mentions: 1
Published: about 6 years ago
10.3389/fphys.2017.00393
Dynamic Skin Patterns in Cephalopods
Cited by: 31
Author(s): Martin J. How, Mark D. Norman, Julian Finn, Wen-Sung Chung, N. Justin Marshall
Software Mentions: 1
Published: over 7 years ago
10.3389/fphys.2018.01483
Marker-Free Tracking for Motion Artifact Compensation and Deformation Measurements in Optical Mapping Videos of Contracting Hearts
Cited by: 21
Author(s): Jan Christoph, Stefan Luther
Software Mentions: 1
Published: about 6 years ago
10.3389/fphys.2019.00678
Aversive Training of Honey Bees in an Automated Y-Maze
Cited by: 14
Author(s): Morgane Nouvian, C. Giovanni Galizia
Software Mentions: 1
Published: over 5 years ago
10.3389/fphys.2021.622569
Two-Tiered Response of Cardiorespiratory-Cerebrovascular Network to Orthostatic Challenge
Cited by: 4
Author(s): Péter Mukli, Zoltán Zsolt Nagy, Frigyes Samuel Racz, István Portörő, András Hartmann, Orestis Stylianou, Róbert Debreczeni, Dániel Bereczki, András Eke
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2021.604593
Maternal Methadone Destabilizes Neonatal Breathing and Desensitizes Neonates to Opioid-Induced Respiratory Frequency Depression
Cited by: 6
Author(s): Austin D. Hocker, Nina R. Morrison, Matthew Selby, Adrianne G. Huxtable
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2020.01099
An Alternative Splicing Program for Mouse Craniofacial Development
Cited by: 11
Author(s): Joan E. Hooper, Kenneth L. Jones, Frances Smith, Trevor Williams, Hong Li
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pgen.1003283
PcG-Mediated Higher-Order Chromatin Structures Modulate Replication Programs at the Drosophila BX-C
Cited by: 13
Author(s): Federica Lo Sardo, Chiara Lanzuolo, Federico Comoglio, Marco De Bardi, Renato Paro, Valerio Orlando
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pgen.1000903
MicroRNA–Directed siRNA Biogenesis in Caenorhabditis elegans
Cited by: 63
Author(s): Régis L. Corrêa, Florian Steiner, Eugène Berezikov, René F. Ketting
Software Mentions: 1
Published: over 14 years ago
10.3389/fpls.2020.570778
Transcription Terminator-Mediated Enhancement in Transgene Expression in Maize: Preponderance of the AUGAAU Motif Overlapping With Poly(A) Signals
Cited by: 14
Author(s): Po-Hao Wang, Sandeep Kumar, Jia Zeng, Robert E. McEwan, Terry R. Wright, Manju Gupta
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2015.00181
Partitioning of multivariate phenotypes using regression trees reveals complex patterns of adaptation to climate across the range of black cottonwood (Populus trichocarpa)
Cited by: 6
Author(s): Regis W. Oubida, Dashzeveg Gantulga, Man Zhang, Long Zhou, Rajesh K. Bawa, Jason A. Holliday
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-2164-10-441
Reciprocal regulation by the CepIR and CciIR quorum sensing systems in Burkholderia cenocepacia
Cited by: 66
Author(s): Eoin P. O'Grady, Duber Frey Viteri, Rebecca J. Malott, Pamela A. Sokol
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pgen.1005217
Disruption of Transcriptional Coactivator Sub1 Leads to Genome-Wide Re-distribution of Clustered Mutations Induced by APOBEC in Active Yeast Genes
Cited by: 50
Author(s): Artem G. Lada, Sergei Kliver, Alok Dhar, Dmitrii E. Polev, Alexey Masharsky, Igor B. Rogozin, Youri I. Pavlov
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pgen.1004692
Genetic Influences on Translation in Yeast
Cited by: 78
Author(s): Frank W. Albert, Dale Muzzey, Jonathan S. Weissman, Leonid Kruglyak
Software Mentions: 1
Published: about 10 years ago
10.7554/eLife.32303
Extreme heterogeneity of influenza virus infection in single cells
Cited by: 191
Author(s): Alan D. Russell, Cole Trapnell, Jesse D. Bloom
Software Mentions: 1
Published: almost 7 years ago
10.7554/eLife.25260
Mechanosensory neurons control the timing of spinal microcircuit selection during locomotion
Cited by: 41
Author(s): Steven Knafo, Kevin Fidelin, Andrew Prendergast, Po-En Brian Tseng, Alexandre Parrin, Charles W. Dickey, Urs Lucas Böhm, Sophie Nunes Figueiredo, Olivier Thouvenin, Hugues Pascal‐Moussellard, Claire Wyart
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.50143
Analysis of stochastic fluctuations in responsiveness is a critical step toward personalized anesthesia
Cited by: 21
Author(s): Andrew R. McKinstry-Wu, Andrzej Z. Wasilczuk, Benjamin A Harrison, Victoria M. Bedell, Mathangi Sridharan, Jayce J Breig, Michael Pack, Max B. Kelz, Alex Proekt
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pgen.1006886
Mouse models of 17q21.31 microdeletion and microduplication syndromes highlight the importance of Kansl1 for cognition
Cited by: 27
Author(s): Thomas Arbogast, Giovanni Iacono, Claire Chevalier, Nurudeen O. Afinowi, Xander Houbaert, Matthijs C. van Eede, Christine Laliberté, Marie‐Christine Birling, Katrin Linda, Hamid Méziane, Mohammed Selloum, Tania Sorg, Nael Nadif Kasri, David A. Koolen, Henk Stunnenberg, R. Mark Henkelman, Maksym V. Kopanitsa, Yann Humeau, Bert B.A. de Vries, Yann Hérault
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pgen.1003716
Combining Quantitative Genetic Footprinting and Trait Enrichment Analysis to Identify Fitness Determinants of a Bacterial Pathogen
Cited by: 39
Author(s): Travis J. Wiles, J. Paul Norton, Colin W. Russell, Brian Dalley, Kael F. Fischer, Matthew Mulvey
Software Mentions: 1
Published: over 11 years ago
10.1098/rsif.2018.0416
Dielectric characterization of <i>Plasmodium falciparum</i> -infected red blood cells using microfluidic impedance cytometry
Cited by: 40
Author(s): Carlos Honrado, Laura Ciuffreda, Daniel Spencer, Lisa Ranford-Cartwright, Hywel Morgan
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pcbi.1005648
mRNA/protein sequence complementarity and its determinants: The impact of affinity scales
Cited by: 23
Author(s): Lukas Bartonek, Bojan Žagrović
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2021.706574
Spatial and Ecological Drivers of Genetic Structure in Greek Populations of Alkanna tinctoria (Boraginaceae), a Polyploid Medicinal Herb
Cited by: 6
Author(s): Maqshoof Ahmad, Thibault Leroy, Nikos Krigas, Eva M. Temsch, Hanna Weiss‐Schneeweiss, Christian Lexer, Eva Maria Sehr, Ovidiu Paun
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2018.00083
Mapping Late Leaf Spot Resistance in Peanut (Arachis hypogaea) Using QTL-seq Reveals Markers for Marker-Assisted Selection
Cited by: 81
Author(s): Josh Clevenger, Ye Chu, Carolina Chavarro, Stephanie Botton, A. K. Culbreath, T. G. Isleib, C. Corley Holbrook, Peggy Ozias‐Akins
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pcbi.1004270
Mechanisms of Left-Right Coordination in Mammalian Locomotor Pattern Generation Circuits: A Mathematical Modeling View
Cited by: 31
Author(s): Yaroslav I. Molkov, Bartholomew J. Bacak, Adolfo E. Talpalar, Ilya A. Rybak
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pcbi.1004197
The Role of Inhibition in a Computational Model of an Auditory Cortical Neuron during the Encoding of Temporal Information
Cited by: 17
Author(s): Daniel Bendor
Software Mentions: 1
Published: over 9 years ago
10.3389/fpls.2013.00210
A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar
Cited by: 12
Author(s): Jamie A. O’Rourke, Luis P. Íñiguez, Bruna Bucciarelli, Jeffrey Roessler, Jeremy Schmutz, Phillip E. McClean, Scott A. Jackson, Georgina Hernández, Michelle A. Graham, Robert M. Stupar, Carroll P. Vance
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12864-015-1634-x
Whole genome capture of vector-borne pathogens from mixed DNA samples: a case study of Borrelia burgdorferi
Cited by: 37
Author(s): Giovanna Carpi, Katharine S. Walter, Stephen J. Bent, Anne G. Hoen, Maria A. Diuk‐Wasser, Adalgisa Caccone
Software Mentions: 1
Published: over 9 years ago
10.3389/fpls.2018.00996
Development of Target Sequence Capture and Estimation of Genomic Relatedness in a Mixed Oak Stand
Cited by: 14
Author(s): Isabelle Lesur, Hermine Alexandre, Christophe Boury, Émilie Chancerel, Christophe Plomion, Antoine Kremer
Software Mentions: 1
Published: over 6 years ago
10.3389/fpls.2021.666117
MicroRNA-Mediated Responses to Chromium Stress Provide Insight Into Tolerance Characteristics of Miscanthus sinensis
Cited by: 12
Author(s): Gang Nie, Zongchao Liao, Minyi Zhong, Jie Zhou, Jiabang Cai, Aiyu Liu, Xia Wang, Xinquan Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2015.00249
Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.)
Cited by: 61
Author(s): C.F.S. Koning-Boucoiran, G. Esselink, M. Vukosavljev, W.P.C. van ‘t Westende, Virginia W. Gitonga, Frans A. Krens, Roeland E. Voorrips, Eric van de Weg, Dietmar Schulz, Thomas Debener, Chris Maliepaard, Paul Arens, M.J.M. Smulders
Software Mentions: 1
Published: over 9 years ago
10.3389/fpsyt.2017.00071
Identifying Electrophysiological Prodromes of Post-traumatic Stress Disorder: Results from a Pilot Study
Cited by: 8
Author(s): Chao Wang, Michelle E. Costanzo, Paul E. Rapp, David Darmon, Kylee Bashirelahi, Dominic E. Nathan, Christopher J. Cellucci, Michael J. Roy, David O. Keyser
Software Mentions: 1
Published: over 7 years ago
10.3389/fpsyt.2020.00826
Effects of Ketamine Administration on Auditory Information Processing in the Neocortex of Nonhuman Primates
Cited by: 2
Author(s): Misako Komatsu, Noritaka Ichinohe
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1002942
Noise-invariant Neurons in the Avian Auditory Cortex: Hearing the Song in Noise
Cited by: 61
Author(s): Robert C. Moore, Tyler Lee, Frédéric E. Theunissen
Software Mentions: 1
Published: over 11 years ago
10.3389/fpsyg.2019.02850
A Mobile Phone App for the Generation and Characterization of Motor Habits
Cited by: 4
Author(s): Paula Banca, Daniel McNamee, Thomas Piercy, Qiang Luo, Trevor W. Robbins
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpsyg.2014.00394
Enhanced neural synchrony between left auditory and premotor cortex is associated with successful phonetic categorization
Cited by: 33
Author(s): Jussi Alho, Fa‐Hsuan Lin, Marc Sato, Hannu Tiitinen, Mikko Sams, Iiro P. Jä̈askëlainen
Software Mentions: 1
Published: over 10 years ago
10.3389/fnsys.2014.00039
Navigational strategies underlying phototaxis in larval zebrafish
Cited by: 43
Author(s): Xiuye Chen, Florian Engert
Software Mentions: 1
Published: over 10 years ago
10.3389/fnsys.2015.00024
Neural correlates of high-risk behavior tendencies and impulsivity in an emotional Go/NoGo fMRI task
Cited by: 28
Author(s): Matthew Brown, James Benoit, Michal Juhás, R. Marc Lebel, Marnie MacKay, Ericson Dametto, Peter H. Silverstone, Florin Dolcos, Serdar Dursun, Andrew J. Greenshaw
Software Mentions: 1
Published: over 9 years ago
10.3389/fnsys.2015.00124
fMRI investigation of response inhibition, emotion, impulsivity, and clinical high-risk behavior in adolescents
Cited by: 15
Author(s): Matthew Brown, James Benoit, Michal Juhás, Ericson Dametto, Tiffanie T. Tse, Marnie MacKay, Bhaskar Sen, Alan M. Carroll, Oleksandr Hodlevskyy, Peter H. Silverstone, Florin Dolcos, Serdar Dursun, Andrew J. Greenshaw
Software Mentions: 1
Published: about 9 years ago
10.3389/fnsys.2014.00237
Propofol and sevoflurane induce distinct burst suppression patterns in rats
Cited by: 46
Author(s): Jonathan D. Kenny, M. Brandon Westover, ShiNung Ching, Emery N. Brown, Ken Solt
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12864-015-1306-x
Functional analysis of C1 family cysteine peptidases in the larval gut of Тenebrio molitor and Tribolium castaneum
Cited by: 36
Author(s): Alexander Martynov, Elena N. Elpidina, Lindsey C. Perkin, Brenda Oppert
Software Mentions: 1
Published: almost 10 years ago
10.3389/fnsys.2017.00085
Investigating the Usability and Acute Effects of a Bedside Video Console to Prefrontal Cortical Activity Alterations: A Preclinical Study in Healthy Elderly
Cited by: 8
Author(s): Ruud H. Knols, Jaap Swanenburg, Dino De Bon, Federico Gennaro, M. Wolf, Bernard Krüger, Dominique Béttex, Eling D. de Bruin
Software Mentions: 1
Published: almost 7 years ago
10.1534/g3.112.005173
Mature Microsatellites: Mechanisms Underlying Dinucleotide Microsatellite Mutational Biases in Human Cells
Cited by: 23
Author(s): Beverly A. Baptiste, Guruprasad Ananda, Noelle Strubczewski, Andrew Lutzkanin, Su Jen Khoo, Abhinaya Srikanth, Nari Kim, Kateryna D. Makova, Maria M. Krasilnikova, Kristin A. Eckert
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pcbi.1005369
Effect of mutation mechanisms on variant composition and distribution in Caenorhabditis elegans
Cited by: 5
Author(s): Jiou Wang
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pcbi.1004533
A Functional Cartography of Cognitive Systems
Cited by: 138
Author(s): Marcelo G. Mattar, Michael W. Cole, Sharon L. Thompson-Schill, Danielle S. Bassett
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pcbi.1003471
Overexpression of Heat Shock Protein 72 Attenuates NF-κB Activation Using a Combination of Regulatory Mechanisms in Microglia
Cited by: 37
Author(s): Patrick W. Sheppard, Xiaoyun Sun, Mustafa Khammash, Rona G. Giffard
Software Mentions: 1
Published: almost 11 years ago
10.1534/g3.115.025858
Formation of Extrachromosomal Circular DNA from Long Terminal Repeats of Retrotransposons in<i>Saccharomyces cerevisiae</i>
Cited by: 39
Author(s): Henrik Devitt Møller, Christina Larsen, Lance Parsons, Anders J. Hansen, Birgitte Regenberg, Tobias Mourier
Software Mentions: 1
Published: almost 9 years ago
10.7554/eLife.46084
Mouse TRPA1 function and membrane localization are modulated by direct interactions with cholesterol
Cited by: 46
Author(s): Justyna B. Startek, Brett Boonen, Alejandro López‐Requena, Ariel Talavera, Yeranddy A. Alpízar, Debapriya Ghosh, Nele Van Ranst, Bernd Nilius, Thomas Voets, Karel Talavera
Software Mentions: 1
Published: over 5 years ago
10.5713/ajas.20.0186
Effects of dietary glycerol inclusion on growth performance, carcass and meat quality characteristics, glycogen content, and meat volatile compounds in Korean cattle steers
Cited by: 4
Author(s): Min Yu Piao, Dooyoung Jung, Hyun Mi Kang, Seung Ju Park, Jin Oh Lee, Minsu Kim, Hyun Jin Kim, Do Hyun Kim, Jakyeom Seo, Cheorun Jo, Nazmul Haque, Myunggi Baik
Software Mentions: 1
Published: over 3 years ago
10.3390/antibiotics8040159
The Effect of 2-Thiocyanatopyridine Derivative 11026103 on Burkholderia Cenocepacia: Resistance Mechanisms and Systemic Impact
Cited by: 6
Author(s): Jaroslav Nunvář, Andrew M. Hogan, Silvia Buroni, Svetlana Savina, Vadim Makarov, Silvia T. Cardona, Pavel Dřevı́nek
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pcbi.1005951
The extent of ribosome queuing in budding yeast
Cited by: 62
Author(s): Alon Diament, Andrew B. Feldman, Elisheva Schochet, Martin Kupiec, Yoav Arava, Tamir Tuller
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pcbi.1005225
An Extended Normalization Model of Attention Accounts for Feature-Based Attentional Enhancement of Both Response and Coherence Gain
Cited by: 19
Author(s): Philipp Schwedhelm, B. Suresh Krishna, Stefan Treue
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pbio.1000173
Hippocampus Leads Ventral Striatum in Replay of Place-Reward Information
Cited by: 354
Author(s): Carien S. Lansink, Pieter M. Goltstein, J. Lankelma, Bruce L. McNaughton, Cyriel M. A. Pennartz
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pbio.0040125
Functional Imaging of Numerical Processing in Adults and 4-y-Old Children
Cited by: 461
Author(s): Jessica F. Cantlon, Elizabeth M. Brannon, Elizabeth Carter, Kevin A. Pelphrey
Software Mentions: 1
Published: over 18 years ago
10.1371/journal.pbio.1000063
Receptive Fields in Primate Retina Are Coordinated to Sample Visual Space More Uniformly
Cited by: 117
Author(s): Jeffrey Gauthier, Greg D. Field, Alexander Sher, Martin Greschner, Jonathon Shlens, A. M. Litke, E. J. Chichilnisky
Software Mentions: 1
Published: over 15 years ago
10.1186/s12864-016-3425-4
Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller
Cited by: 81
Author(s): Chang Xu, Mohammad Ranjbar, Zhong Wu, John DiCarlo, Yexun Wang
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pbio.3000194
Mouse screen reveals multiple new genes underlying mouse and human hearing loss
Cited by: 77
Author(s): Neil J. Ingham, Selina Pearson, Valerie E. Vancollie, Victoria Rook, Morag A. Lewis, Jing Chen, Annalisa Buniello, Elisa Martelletti, Lorenzo Preite, Clk Lam, Felix D. Weiss, Zöe Powis, Pim Suwannarat, Christopher J. Lelliott, Sally J. Dawson, Jacqueline K. White, Karen P. Steel
Software Mentions: 1
Published: over 5 years ago