Ecosyste.ms: Papers

10.1038/s41598-018-20578-9

Distractor displacements during saccades are reflected in the time-course of saccade curvature
Cited by: 11
Author(s): Jonathan van Leeuwen, Artem V. Belopolsky
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-22701-2

Whole transcriptome profiling of Late-Onset Alzheimer’s Disease patients provides insights into the molecular changes involved in the disease
Cited by: 91
Author(s): Anita Annese, Caterina Manzari, Claudia Lionetti, Ernesto Picardi, David S. Horner, Matteo Chiara, Mariano Francesco Caratozzolo, Apollonia Tullo, Bruno Fosso, Graziano Pesole, Anna Maria D’Erchia
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-28630-4

Sexual ancestors generated an obligate asexual and globally dispersed clone within the model diatom species Thalassiosira pseudonana
Cited by: 17
Author(s): Julie A. Koester, Chris T. Berthiaume, Naozumi Hiranuma, Micaela S. Parker, Vaughn Iverson, Rhonda Morales, Walter L. Ruzzo, E. Virginia Armbrust
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-28847-3

Shorter-lived neural taste representations in obese compared to lean individuals
Cited by: 12
Author(s): Samyogita Hardikar, Raphael Wallroth, Arno Villringer, Kathrin Ohla
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-31775-x

Using high-throughput sequencing to investigate the factors structuring genomic variation of a Mediterranean grasshopper of great conservation concern
Cited by: 12
Author(s): María José González‐Serna, Pedro J. Cordero, Joaquín Ortego
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-36042-7

Nanopore-based detection and characterization of yam viruses
Cited by: 49
Author(s): Denis Filloux, Emmanuel Fernandez, Étienne Loire, Lisa Claude, Serge Galzi, Thierry Candresse, Stephan Winter, M. L. Jeeva, T. Makeshkumar, Darren P. Martin, Denis Filloux
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-018-37857-0

Heterodera glycines utilizes promiscuous spliced leaders and demonstrates a unique preference for a species-specific spliced leader over C. elegans SL1
Cited by: 3
Author(s): Stacey N. Barnes, Rick E. Masonbrink, Thomas R. Maier, Arun S. Seetharam, Anoop Sindhu, Andrew J. Severin, Thomas J. Baum
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-42530-1

Proteins that physically interact with the phosphatase Cdc14 in Candida albicans have diverse roles in the cell cycle
Cited by: 17
Author(s): Iliyana N. Kaneva, Ian Sudbery, Mark J. Dickman, Peter E. Sudbery
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-59678-w

PDCD4 controls the G1/S-phase transition in a telomerase-immortalized epithelial cell line and affects the expression level and translation of multiple mRNAs
Cited by: 7
Author(s): Astrid Haas, Benedikt S. Nilges, Sebastian A. Leidel, Karl‐Heinz Klempnauer
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-59797-4

Decimated little brown bats show potential for adaptive change
Cited by: 23
Author(s): Giorgia G. Auteri, L. Lacey Knowles
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-65135-5

Arabinogalactan-proteins of Zostera marina L. contain unique glycan structures and provide insight into adaption processes to saline environments
Cited by: 35
Author(s): Lukas Pfeifer, Thomas Shafee, Kim L. Johnson, Antony Bacic, Birgit Classen
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-65822-3

Baseline and Disease-Induced Transcriptional Profiles in Children with Sickle Cell Disease
Cited by: 3
Author(s): Susan E Creary, Chandra L. Shrestha, Kavitha Kotha, Abena Minta, James Fitch, Lisa Jaramillo, Shuzhong Zhang, Swaroop Pinto, Rohan Thompson, Octavio Ramilo, Peter White, M. Asuncion Mejias, Benjamin T. Kopp
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-68302-w

Intraarticular injection of liposomal adenosine reduces cartilage damage in established murine and rat models of osteoarthritis
Cited by: 16
Author(s): Carmen Corciulo, Cristina Castro, Thomas R. Coughlin, Samson T. Jacob, Li Zhu, David Fenyö, Daniel B. Rifkin, Oran D. Kennedy, Bruce N. Cronstein
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-71125-4

Active vision in immersive, 360° real-world environments
Cited by: 19
Author(s): Amanda J. Haskins, Jeff Mentch, Thomas L. Botch, Caroline E. Robertson
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-72260-8

Network Hamiltonian models reveal pathways to amyloid fibril formation
Cited by: 8
Author(s): Yue Yu, Gianmarc Grazioli, Megha H. Unhelkar, Rachel W. Martin, Carter T. Butts
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-73253-3

Reconstruction and analysis of genome-scale metabolic model of weak Crabtree positive yeast Lachancea kluyveri
Cited by: 9
Author(s): Piyush Nanda, Pradipta Patra, Manali Das, Amit Ghosh
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-80128-0

Perceptual decisions are biased toward relevant prior choices
Cited by: 16
Author(s): Helen Feigin, Shira Baror, Moshe Bar, Adam Zaidel
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-80583-9

Metagenomic insights of the infant microbiome community structure and function across multiple sites in the United States
Cited by: 32
Author(s): Giorgio Casaburi, Rebbeca M. Duar, Heather K. Brown, Ryan D. Mitchell, Sufyan Kazi, Stephanie Chew, Orla Cagney, Robin L. Flannery, Karl G. Sylvester, Steven A. Frese, Bethany M. Henrick, Sara M. Freeman
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-87455-w

Motor and sensory features successfully decode autism spectrum disorder and combine with the original RDoC framework to boost diagnostic classification
Cited by: 12
Author(s): Laura Harrison, Anastasiya Kats, Emily Kilroy, Christiana Butera, Aditya Jayashankar, Ümit Keleş, Lisa Aziz‐Zadeh
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-85896-x

BonZeb: open-source, modular software tools for high-resolution zebrafish tracking and analysis
Cited by: 8
Author(s): Nicholas C. Guilbeault, Jordan Guerguiev, Michael S. Martin, Isabelle Tate, Tod R. Thiele
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89630-5

Identification and Classification of Rare Variants in NPC1 and NPC2 in Quebec
Cited by: 2
Author(s): Lahoud Touma, Marjorie Labrecque, Martine Tétreault, Antoine Duquette
Software Mentions: 2
Published: over 3 years ago

10.1080/14686996.2019.1614980

Ozone ultrafine bubble water induces the cellular signaling involved in oxidative stress responses in human periodontal ligament fibroblasts
Cited by: 13
Author(s): Anongwee Leewananthawet, Shin’ichi Arakawa, Tokuju Okano, Ryô Kinoshita, Hiroshi Ashida, Yuichi Izumi, Toshihiko Suzuki
Software Mentions: 2
Published: over 5 years ago

10.1186/s40793-015-0098-6

Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel
Cited by: 9
Author(s): Saima Zubair, Anne Fischer, Anne Liljander, Jochen Meens, Jan Hegerman, Hadrien Gourlé, Richard P. Bishop, Ina Roebbelen, Mario Younan, Mudassir Imran Mustafa, Muhammad Mushtaq, Erik Bongcam‐Rudloff, Joerg Jores
Software Mentions: 2
Published: about 9 years ago

10.1093/synbio/ysz026

Rapid generation of sequence-diverse terminator libraries and their parameterization using quantitative Term-Seq
Cited by: 11
Author(s): Andrew J. Hudson, Hans-Joachim Wieden
Software Mentions: 2
Published: almost 6 years ago

10.1101/2021.03.15.435416

phastSim: efficient simulation of sequence evolution for pandemic-scale datasets
Cited by: 8
Author(s): Nicola De Maio, Lukas Weilguny, Conor R Walker, Yatish Turakhia, Russ Corbett‐Detig, Nick Goldman
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.01038-17

Combining Comprehensive Analysis of Off-Site Lambda Phage Integration with a CRISPR-Based Means of Characterizing Downstream Physiology
Cited by: 2
Author(s): Tao Yu, Markus W. Covert
Software Mentions: 2
Published: about 7 years ago

10.1128/mBio.01050-17

Effects of Mutations on Replicative Fitness and Major Histocompatibility Complex Class I Binding Affinity Are Among the Determinants Underlying Cytotoxic-T-Lymphocyte Escape of HIV-1 Gag Epitopes
Cited by: 12
Author(s): Yushen Du, Tianhao Zhang, Lei Dai, Xiaojuan Zheng, Aleksandr M. Gorin, John Oishi, Ting-Ting Wu, Janice Yoshizawa, Xinmin Li, Otto O. Yang, Otoniel Martı́nez-Maza, Roger Detels, Ren Sun
Software Mentions: 2
Published: almost 7 years ago

10.1128/mBio.01419-18

Azithromycin Resistance through Interspecific Acquisition of an Epistasis-Dependent Efflux Pump Component and Transcriptional Regulator in Neisseria gonorrhoeae
Cited by: 119
Author(s): Crista B. Wadsworth, Brian J. Arnold, Mohamad Sater, Yonatan H. Grad
Software Mentions: 2
Published: about 6 years ago

10.1128/mBio.02415-19

A CRISPR Interference System for Efficient and Rapid Gene Knockdown in Caulobacter crescentus
Cited by: 21
Author(s): Mathilde Guzzo, Lennice K. Castro, Christopher R Reisch, Monica S. Guo, Michael T. Laub
Software Mentions: 2
Published: over 4 years ago

10.1128/mBio.02107-20

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona
Cited by: 27
Author(s): Jason T. Ladner, Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts, Krystal Sheridan, Ashlyn Pfeiffer, Hayley Yaglom, Darrin Lemmer, Jason W. Sahl, Emily A Kaelin, Rabia Maqsood, Nicholas A. Bokulich, Grace Quirk, Thomas D. Watts, Kenneth Komatsu, Victor Waddell, Efrem S. Lim, J. Gregory Caporaso, David M. Engelthaler, Michael Worobey, Paul Keim
Software Mentions: 2
Published: about 4 years ago

10.1128/mSphereDirect.00552-17

Cooperating H3N2 Influenza Virus Variants Are Not Detectable in Primary Clinical Samples
Cited by: 24
Author(s): Katherine S Xue, Alexander L. Greninger, Ailyn C. Pérez-Osorio, Jesse D. Bloom
Software Mentions: 2
Published: over 6 years ago

10.1128/mSphere.00218-18

Rifampin- or Capreomycin-Induced Remodeling of the <i>Mycobacterium smegmatis</i> Mycolic Acid Layer Is Mitigated in Synergistic Combinations with Cationic Antimicrobial Peptides
Cited by: 10
Author(s): DeDe Kwun-Wai Man, Tokuwa Kanno, Giorgia Manzo, Brian D. Robertson, Jason T. Lam, A. James Mason
Software Mentions: 2
Published: about 6 years ago

10.1128/mSystems.00131-18

Finer-Scale Phylosymbiosis: Insights from Insect Viromes
Cited by: 23
Author(s): Brittany A. Leigh, Sarah R. Bordenstein, Andrew Brooks, Aram Mikaelyan, Seth R. Bordenstein
Software Mentions: 2
Published: about 6 years ago

10.1107/S2052252518017621

Homochiral and racemic MicroED structures of a peptide repeat from the ice-nucleation protein InaZ
Cited by: 14
Author(s): Chih-Te Zee, Calina Glynn, Marcus Gallagher-Jones, Jennifer Miao, C. Santiago, Duilio Cascio, Tamir Gonen, M.R. Sawaya, José A. Rodríguez
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.jgg.2015.03.011

A Genome-Wide CRISPR Library for High-Throughput Genetic Screening in Drosophila Cells
Cited by: 51
Author(s): Andrew Bassett, Lesheng Kong, Ji‐Long Liu
Software Mentions: 2
Published: over 9 years ago

10.3390/ijerph17217779

Method for Quantifying Variation in the Resistance of Electronic Cigarette Coils
Cited by: 6
Author(s): Qutaiba Saleh, Edward Hensel, Risa J Robinson
Software Mentions: 2
Published: about 4 years ago

10.2196/resprot.3966

Feasibility of a Dynamic Web Guidance Approach for Personalized Physical Activity Prescription Based on Daily Information From Wearable Technology
Cited by: 8
Author(s): Crystal L. Coolbaugh, Stephen C Raymond, David Hawkins
Software Mentions: 2
Published: over 9 years ago

10.1099/jmm.0.001280

Impact of different SARS-CoV-2 assays on laboratory turnaround time
Cited by: 8
Author(s): Bastian Marquis, Onya Opota, Katia Jaton, Gilbert Greub
Software Mentions: 2
Published: over 3 years ago

10.1007/s00239-017-9801-0

The Distribution of Miniature Impala Elements and SIX Genes in the Fusarium Genus is Suggestive of Horizontal Gene Transfer
Cited by: 32
Author(s): Peter van Dam, Martijn Rep
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.29550

Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo
Cited by: 76
Author(s): Michael Stadler, Jenna E. Haines, Michael B. Eisen
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.13403

Mixed-mode oscillations and population bursting in the pre-Bötzinger complex
Cited by: 38
Author(s): Bartholomew J. Bacak, Taegyo Kim, Jeffrey C. Smith, Jonathan E. Rubin, Ilya A. Rybak
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.41444

The RNA helicase UPF1 associates with mRNAs co-transcriptionally and is required for the release of mRNAs from gene loci
Cited by: 35
Author(s): Anand Kumar Singh, Subhendu Roy Choudhury, Sandip De, Jie Zhang, Stephen Kissane, Vibha Dwivedi, Preethi Ramanathan, Marija Petrić, Luisa Orsini, Daniel Hebenstreit
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.61167

Feeding state functionally reconfigures a sensory circuit to drive thermosensory behavioral plasticity
Cited by: 26
Author(s): Asuka Takeishi, Jihye Yeon, Nathan Harris, Wenxing Yang, Piali Sengupta
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.01149

Nanoscale protein architecture of the kidney glomerular basement membrane
Cited by: 133
Author(s): Hani Suleiman, Lei Zhang, Robyn Roth, John E. Heuser, Jeffrey H. Miner, Andréy S. Shaw, Adish Dani
Software Mentions: 2
Published: about 11 years ago

10.7554/eLife.15200

Rewiring MAP kinases in Saccharomyces cerevisiae to regulate novel targets through ubiquitination
Cited by: 11
Author(s): Benjamin Groves, Arjun Khakhar, Cory M. Nadel, Richard G. Gardner, Georg Seelig
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.37105

Acute control of the sleep switch in Drosophila reveals a role for gap junctions in regulating behavioral responsiveness
Cited by: 29
Author(s): Michael Troup, Melvyn Yap, Chelsie Rohrscheib, Martyna Grabowska, Deniz Ertekin, Roshini Randeniya, Benjamin Kottler, Aoife Larkin, Kelly Munro, Paul J. Shaw, Bruno van Swinderen
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.49872

Dendritic NMDA receptors in parvalbumin neurons enable strong and stable neuronal assemblies
Cited by: 38
Author(s): Jonathan Cornford, Marion Mercier, Marco Leite, Vincent Magloire, Michael Häusser, Dimitri M. Kullmann
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.18270

MYC activation and BCL2L11 silencing by a tumour virus through the large-scale reconfiguration of enhancer-promoter hubs
Cited by: 74
Author(s): C. David Wood, Hildegonda Veenstra, Sarika Khasnis, Andrea Gunnell, Helen Webb, Claire Shannon-Lowe, Simon Andrews, Cameron S. Osborne, Michelle J. West
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.67236

High-resolution, genome-wide mapping of positive supercoiling in chromosomes
Cited by: 27
Author(s): Monica S. Guo, Ryo Kawamura, Megan L Littlehale, John F. Marko, Michael T. Laub
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.44812

Disentangling strictly self-serving mutations from win-win mutations in a mutualistic microbial community
Cited by: 11
Author(s): Samuel F.M. Hart, Jose Mario Bello Pineda, Chi‐Chun Chen, Robin Green, Wenying Shou
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.44941

Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining
Cited by: 9
Author(s): Isa Kristina Kirk, Christian Simon, Karina Banasik, Peter Christoffer Holm, Amalie Dahl Haue, Peter Bjødstrup Jensen, Lars Juhl Jensen, Cristina Leal Rodríguez, Mette Krogh Pedersen, Robert Eriksson, Henrik Ullits Andersen, Thomas Almdal, Jette Bork-Jensen, Niels Grarup, Knut Borch‐Johnsen, Oluf Pedersen, Flemming Pociot, Torben Hansen, Regine Bergholdt, Peter Rossing, Søren Brunak
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.55414

Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment
Cited by: 22
Author(s): Zachary D. Blount, Rohan Maddamsetti, Nkrumah A. Grant, Sumaya T Ahmed, Tanush Jagdish, Jessica Baxter, Brooke A. Sommerfeld, Alice Tillman, Jeremy P. Moore, Joan L. Slonczewski, Jeffrey E. Barrick, Richard E. Lenski
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.62046

Single-molecule view of coordination in a multi-functional DNA polymerase
Cited by: 10
Author(s): Raymond F. Pauszek, Rajan Lamichhane, Arishma Rajkarnikar Singh, David P. Millar
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.15175

Diagnostic potential of tumor DNA from ovarian cyst fluid
Cited by: 29
Author(s): Yuxuan Wang, Karin Sundfeldt, Constantina Mateoiu, Ie Ming Shih, Robert J. Kurman, Joy Schaefer, Natalie Silliman, Isaac Kinde, Simeon Springer, Michael B. Foote, Björg Kristjánsdóttir, Nathan T. James, Kenneth W. Kinzler, Nickolas Papadopoulos, Luis A. Díaz, Bert Vogelstein
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.45530

The genetic factors of bilaterian evolution
Cited by: 38
Author(s): Peter Heger, Wen Zheng, Anna Rottmann, Kristen A. Panfilio, Thomas Wiehe
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.26875

Parallel evolution of influenza across multiple spatiotemporal scales
Cited by: 107
Author(s): Katherine S Xue, Terry Stevens-Ayers, Angela P Campbell, Janet A. Englund, Steven A. Pergam, Michael Boeckh, Jesse D. Bloom
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.30094

Dissection of affinity captured LINE-1 macromolecular complexes
Cited by: 59
Author(s): Martin S. Taylor, Ilya Altukhov, Kelly R. Molloy, Paolo Mita, Hua Jiang, Emily M. Adney, Aleksandra Wudzinska, Sana Badri, Dimitry D Ischenko, George Eng, Kathleen H. Burns, David Fenyö, Brian T. Chait, Dmitry Alexeev, Michael P. Rout, Jef D. Boeke, John LaCava
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.45105

Single-cell lineage tracing by endogenous mutations enriched in transposase accessible mitochondrial DNA
Cited by: 83
Author(s): Jin Xu, Kevin A. Nuno, Ulrike M. Litzenburger, Yanyan Qi, M. Ryan Corces, Ravindra Majeti, Howard Y. Chang
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.00994

A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity
Cited by: 145
Author(s): Alyson Ashe, Tony Bélicard, Jérémie Le Pen, Peter Sarkies, Lise Frézal, Nicolas J Lehrbach, Marie‐Anne Félix, Eric A. Miska
Software Mentions: 2
Published: about 11 years ago

10.3390/ijms161125951

Construction of the High-Density Genetic Linkage Map and Chromosome Map of Large Yellow Croaker (Larimichthys crocea)
Cited by: 26
Author(s): Jingqun Ao, Jia Li, Xinxin You, Yinnan Mu, Yang Ding, Kaiqiong Mao, Chao Bian, Pengfei Mu, Qiong Shi, Xinhua Chen
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms17111887

Generation and Characterisation of a Reference Transcriptome for Lentil (Lens culinaris Medik.)
Cited by: 39
Author(s): Shimna Sudheesh, Preeti Verma, John W. Forster, Noel O. I. Cogan, Sukhjiwan Kaur
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms19010101

Genome-Wide Analysis of Long Non-Coding RNAs in Potato and Their Potential Role in Tuber Sprouting Process
Cited by: 19
Author(s): Xiaodong Hou, Yongmei Du, Xinmin Liu, Hongbo Zhang, Yanhua Liu, Yan Ning, Zhongfeng Zhang
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20102585

Salt Tolerance Improvement in Rice through Efficient SNP Marker-Assisted Selection Coupled with Speed-Breeding
Cited by: 63
Author(s): Masud Rana, Takeshi Takamatsu, Marouane Baslam, Kentaro Kikuchi, Kazuyoshi Itoh, Naoki Harada, Toshie Sugiyama, Takayuki Ohnishi, Tetsu Kinoshita, Hiroki Takagi, Toshiaki Mitsui
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21062162

Bulked Segregant Analysis Coupled with Whole-Genome Sequencing (BSA-Seq) Mapping Identifies a Novel pi21 Haplotype Conferring Basal Resistance to Rice Blast Disease
Cited by: 21
Author(s): Tingmin Liang, Wenchao Chi, Likun Huang, Mengyu Qu, Shubiao Zhang, Ziqiang Chen, Zaijie Chen, Dagang Tian, Gui Shuang Ying, Xiaofeng Chen, Zonghua Wang, Weiqi Tang, Songbiao Chen
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.6527

Metronomic topotecan impedes tumor growth of<i>MYCN</i>-amplified neuroblastoma cells<i>in vitro</i>and<i>in vivo</i>by therapy induced senescence
Cited by: 36
Author(s): Sabine Taschner‐Mandl, Magdalena Schwarz, Johanna Blaha, Maximilian Kauer, Florian Kromp, Nelli Frank, Fikret Rifatbegovic, Tamara Weiss, Ruth Ladenstein, M Hohenegger, Inge M. Ambros, Peter F. Ambros
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.13666

Mapping heterogeneity in patient-derived melanoma cultures by single-cell RNA-seq
Cited by: 65
Author(s): Tobias Gerber, Edith Willscher, Henry Loeffler‐Wirth, Lydia Hopp, Dirk Schadendorf, Manfred Schartl, Ulf Anderegg, J. Gray Camp, Barbara Treutlein, Hans Binder, Manfred Kunz
Software Mentions: 2
Published: almost 8 years ago

10.1111/jsr.12910

Procedural memory consolidation is associated with heart rate variability and sleep spindles
Cited by: 9
Author(s): Frank J. van Schalkwijk, Theresa Hauser, Kerstin Hoedlmoser, Mohamed Ameen, Frank H. Wilhelm, Cornelia Sauter, Gerhard Klösch, Doris Moser, Georg Gruber, P. Anderer, B. Saletu, Silvia Parapatics, J. Zeitlhofer, Manuel Schabus
Software Mentions: 2
Published: about 5 years ago

10.1186/s12967-019-2129-3

Identifying genetic variants underlying medication-induced osteonecrosis of the jaw in cancer and osteoporosis: a case control study
Cited by: 23
Author(s): Kye Hwa Lee, Su Hwan Kim, Chang Hyen Kim, Byung Joo Min, Grace Juyun Kim, Younggyun Lim, Hun-Sung Kim, Kang Min Ahn, Ju Han Kim
Software Mentions: 2
Published: about 5 years ago

10.1523/ENEURO.0255-19.2019

Superficial Bound of the Depth Limit of Two-Photon Imaging in Mouse Brain
Cited by: 46
Author(s): Kevin T. Takasaki, Reza Abbasi-Asl, Jack Waters
Software Mentions: 2
Published: almost 5 years ago

10.1523/ENEURO.0151-19.2019

Characteristics of Waveform Shape in Parkinson’s Disease Detected with Scalp Electroencephalography
Cited by: 67
Author(s): Nicko Jackson, Scott R. Cole, Bradley Voytek, Nicole C. Swann
Software Mentions: 2
Published: over 5 years ago

10.1523/ENEURO.0050-15.2016

EPSPs Measured in Proximal Dendritic Spines of Cortical Pyramidal Neurons
Cited by: 30
Author(s): Corey D. Acker, Erika Hoyos, Leslie M. Loew
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0125985

Genomic Analysis Reveals the Molecular Basis for Capsule Loss in the Group B Streptococcus Population
Cited by: 28
Author(s): Roberto Rosini, Edmondo Campisi, Matteo De Chiara, Hervé Tettelin, Daniela Rinaudo, Chiara Toniolo, Matteo M. E. Metruccio, Silvia Guidotti, Uffe B. Skov Sørensen, Mogens Kilian, Mário Ramirez, Robert Janulczyk, Claudio Donati, Guido Grandi, Immaculada Margarit
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2020.577853

The Landscape of Severe Combined Immunodeficiency Newborn Screening in the United States in 2020: A Review of Screening Methodologies and Targets, Communication Pathways, and Long-Term Follow-Up Practices
Cited by: 4
Author(s): Ruthanne Sheller, Jelili Ojodu, Emma Griffin, Sari Edelman, Careema Yusuf, Trey Pigg, Alissa Huston, Brian Fitzek, John G Boyle, Sikha Singh
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0086940

Megalencephaly Syndromes: Exome Pipeline Strategies for Detecting Low-Level Mosaic Mutations
Cited by: 18
Author(s): William Tapper, Nicola Foulds, Nicholas C. P. Cross, Paula Aranaz, Joannah Score, Claire Hidalgo-Curtis, David Robinson, Jane Gibson, Sarah Ennis, I. Karen Temple, Andrew Collins
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0101418

De Novo Transcriptomes of a Mixotrophic and a Heterotrophic Ciliate from Marine Plankton
Cited by: 22
Author(s): Luciana F. Santoferrara, Stephanie M. Guida, Huan Zhang, George B. McManus
Software Mentions: 1
Published: over 10 years ago

10.3389/fimmu.2021.607217

Use of IFNγ/IL10 Ratio for Stratification of Hydrocortisone Therapy in Patients With Septic Shock
Cited by: 14
Author(s): Rainer König, Amol Kolte, Olaf Ahlers, Marcus Oswald, Veiko Krauss, Daniela Roell, Oliver Sommerfeld, George Dimοpoulos, Iraklis Tsangaris, Eleni Antoniadou, Neeraja Jaishankar, Holger Bogatsch, Markus Löffler, Markus Rödel, Marina Garcia-Moreno, Lorena Tuchscherr, Charles L. Sprung, Mervyn Singer, Frank M. Brunkhorst, Michael Oppert, Herwig Gerlach, Ralf A. Claus, Sina M. Coldewey, Josef Briegel, Evangelos J. Giamarellos‐Bourboulis, Didier Keh, Michael Bauer
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0029949

Discovery of T Cell Antigens by High-Throughput Screening of Synthetic Minigene Libraries
Cited by: 21
Author(s): Brian D. Hondowicz, Katharine V. Schwedhelm, Arnold Kas, Michael Tasch, Crystal A. Rawlings, Nirasha Ramchurren, Martin W. McIntosh, Leonard A. D’Amico, Srinath Sanda, Nathan Standifer, Jay Shendure, Brad Stone
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.ijppaw.2020.04.005

Diversity of trypanosomes in wildlife of the Kafue ecosystem, Zambia
Cited by: 12
Author(s): David Squarre, Kyoko Hayashida, Alex Kiarie Gaithuma, Herman M. Chambaro, Nobuyoshi Kawai, Ladslav Moonga, Boniface Namangala, Chihiro Sugimoto, Junya Yamagishi
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2019.00129

Identification of Subject-Specific Immunoglobulin Alleles From Expressed Repertoire Sequencing Data
Cited by: 61
Author(s): Daniel Gadala-Maria, Moriah Gidoni, Susanna Marquez, Jason A. Vander Heiden, Justin T. Kos, Corey T. Watson, Kevin O’Connor, Gur Yaari, Steven H. Kleinstein
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0152781

Reduction of Pavlovian Bias in Schizophrenia: Enhanced Effects in Clozapine-Administered Patients
Cited by: 16
Author(s): Matthew A. Albrecht, James A. Waltz, James F. Cavanagh, Michael J. Frank, James M. Gold
Software Mentions: 1
Published: over 8 years ago

10.3389/fnint.2020.561524

Spooky Interaction at a Distance in Cave and Surface Dwelling Electric Fishes
Cited by: 10
Author(s): Eric S. Fortune, Nicole Andanar, Manu S. Madhav, Ravikrishnan P. Jayakumar, Noah J. Cowan, Maria Elina Bichuette, Daphne Soares
Software Mentions: 1
Published: about 4 years ago

10.3389/fnint.2014.00050

Functional activity within the frontal eye fields, posterior parietal cortex, and cerebellar vermis significantly correlates to symmetrical vergence peak velocity: an ROI-based, fMRI study of vergence training
Cited by: 44
Author(s): Tara L. Alvarez, Raj Jaswal, Suril Gohel, Bharat B. Biswal
Software Mentions: 1
Published: over 10 years ago

10.3389/fnint.2015.00044

Memory bias in the temporal bisection point
Cited by: 13
Author(s): Joshua M. Levy, Vijay Mohan K. Namboodiri, Marshall G. Hussain Shuler
Software Mentions: 1
Published: over 9 years ago

10.3389/fnint.2017.00041

Spatial Frequency Selectivity Is Impaired in Dopamine D2 Receptor Knockout Mice
Cited by: 3
Author(s): Bruno Oliveira Ferreira de Souza, Mira Abou Rjeili, Clémentine Quintana, Jean‐Martin Beaulieu, Christian Casanova
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0158631

Comparative Transcriptional Analyses of Francisella tularensis and Francisella novicida
Cited by: 7
Author(s): S. Sarva, Robert H. Waldo, Robert J. Belland, Karl E. Klose
Software Mentions: 1
Published: over 8 years ago

10.3389/fmed.2021.650231

How Genetics Might Explain the Unusual Link Between Malaria and COVID-19
Cited by: 12
Author(s): Marta Rusmini, Paolo Uva, Antonio Amoroso, Manlio Tolomeo, Andrea Cavalli
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.593542

Evolution of Antibiotic Resistance in Surrogates of Francisella tularensis (LVS and Francisella novicida): Effects on Biofilm Formation and Fitness
Cited by: 15
Author(s): Fabrice Biot, Beth A. Bachert, Kevin D. Mlynek, Ronald G. Toothman, G. I. Koroleva, Sean Lovett, Christopher P. Klimko, Gustavo Palacios, Christopher K. Cote, Jason T. Ladner, Joel A. Bozue
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2017.02354

Delineating the Origins of Vibrio parahaemolyticus Isolated from Outbreaks of Acute Hepatopancreatic Necrosis Disease in Asia by the Use of Whole Genome Sequencing
Cited by: 15
Author(s): Songzhe Fu, Huiqin Tian, Dawei Wei, Xiaojun Zhang, Ying Liu
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0035445

Altered Metabolic Signature in Pre-Diabetic NOD Mice
Cited by: 16
Author(s): Rasmus Bødker Madsen, Viqar Banday, Thomas Moritz, Johan Trygg, Kristina Lejon
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2016.02002

Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium
Cited by: 8
Author(s): Songzhe Fu, Sophie Octavia, Qinning Wang, Mark M. Tanaka, Chin Yen Tay, Vitali Sintchenko, Ruiting Lan
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2013.00063

Metagenomic evidence for sulfur lithotrophy by Epsilonproteobacteria as the major energy source for primary productivity in a sub-aerial arctic glacial deposit, Borup Fiord Pass
Cited by: 40
Author(s): Katherine E. Wright, Charles H. D. Williamson, Stephen E. Grasby, John R. Spear, Alexis S. Templeton
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0021743

Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis
Cited by: 89
Author(s): Máximo Rivarola, Jeffrey T. Foster, Agnes P. Chan, Amber Williams, Danny W. Rice, Xinyue Liu, Admasu Melake-Berhan, Heather Huot Creasy, Daniela Puiu, M. J. Rosovitz, Hoda Khouri, Stephen M. Beckstrom-Sternberg, Gerard J. Allan, Paul Keim, Jacques Ravel, Pablo D. Rabinowicz
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2019.02546

In vitro Activity and Heteroresistance of Omadacycline Against Clinical Staphylococcus aureus Isolates From China Reveal the Impact of Omadacycline Susceptibility by Branched-Chain Amino Acid Transport System II Carrier Protein, Na/Pi Cotransporter Family Protein, and Fibronectin-Binding Protein
Cited by: 15
Author(s): Bing Bai, Qisheng Wang, Zhaoxia Pu, Guangjian Xu, Fan Zhang, Chen Zhong, Xinghuai Sun, Jinxin Zheng, Peiyu Li, Qi Deng, Zhijian Yu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0001511

K+ Channel Regulator KCR1 Suppresses Heart Rhythm by Modulating the Pacemaker Current If
Cited by: 29
Author(s): Guido Michels, Fikret Er, Ismail F. Khan, Jeannette Endres-Becker, Mathias C. Brandt, Natig Gassanov, David C. Johns, Uta C. Hoppe
Software Mentions: 1
Published: almost 17 years ago

10.3389/fmicb.2019.02373

Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework
Cited by: 27
Author(s): Javier del Campo, Thierry J. Heger, Raquel Rodríguez‐Martínez, Alexandra Z. Worden, Thomas A. Richards, Ramón Massana, Patrick J. Keeling
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.01747

Metatranscriptomics Reveals the Functions and Enzyme Profiles of the Microbial Community in Chinese Nong-Flavor Liquor Starter
Cited by: 61
Author(s): Yuhong Huang, Zhuolin Yi, Yanling Jin, Mengjun Huang, Kai He, Dayu Liu, Huibo Luo, Dong Zhao, Hui He, Yang Fang, Hai Zhao
Software Mentions: 1
Published: about 7 years ago

10.3390/antibiotics9110729

The Cell Envelope Stress Response of Bacillus subtilis towards Laspartomycin C
Cited by: 3
Author(s): Angelika Diehl, Thomas M. Wood, Susanne Gebhard, Nathaniel I. Martin, Georg Fritz
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2020.573430

Comprehensive Genome Analysis of 6,000 USA SARS-CoV-2 Isolates Reveals Haplotype Signatures and Localized Transmission Patterns by State and by Country
Cited by: 16
Author(s): Lishuang Shen, Jennifer Dien Bard, Jaclyn A. Biegel, Alexander R. Judkins, Xiaowu Gai
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2019.02163

Microfluidics and Metabolomics Reveal Symbiotic Bacterial–Fungal Interactions Between Mortierella elongata and Burkholderia Include Metabolite Exchange
Cited by: 28
Author(s): Jessie K. Uehling, Matthew R. Entler, Hannah R. Meredith, Larry J. Millet, Collin M. Timm, Jayde A. Aufrecht, Gregory Bonito, Nancy L. Engle, Jessy Labbé, Mitchel J. Doktycz, Scott T. Retterer, Joseph W. Spatafora, Jason E. Stajich, Timothy J. Tschaplinski, Rytas Vilgalys
Software Mentions: 1
Published: about 5 years ago

10.1186/s13018-015-0283-8

The influence of distal screw length on the primary stability of volar plate osteosynthesis—a biomechanical study
Cited by: 29
Author(s): Sebastian Felix Baumbach, Alexander Synek, Hannes Traxler, Wolf Mutschler, Dieter H. Pahr, Cheng Yan
Software Mentions: 1
Published: about 9 years ago