Ecosyste.ms: Papers

10.3390/cells10020374

Functional and Structural Characterization of ClC-1 and Nav1.4 Channels Resulting from CLCN1 and SCN4A Mutations Identified Alone and Coexisting in Myotonic Patients
Cited by: 2
Author(s): Oscar Brenes, Raffaella Barbieri, Melissa Vásquez, Rebeca Vindas-Smith, Jeffrey Roig, Adarli Romero, Gerardo Del Valle, Luis Bermúdez-Guzmán, Sara Bertelli, Michael Pusch, Fernando Morales Montero
Software Mentions: 2
Published: almost 4 years ago

10.3390/cells9122680

Human Astrocytes Model Derived from Induced Pluripotent Stem Cells
Cited by: 26
Author(s): Nicolas Leventoux, Satoru Morimoto, Kent Imaizumi, Yuta Sato, Shinichi Takahashi, Kyoko Mashima, Mitsuru Ishikawa, Iki Sonn, Takahiro Kondo, Hirotaka Watanabe, Hideyuki Okano
Software Mentions: 2
Published: almost 4 years ago

10.3390/cells10051165

Physiological Fitness and the Pathophysiology of Chronic Lymphocytic Leukemia (CLL)
Cited by: 7
Author(s): Andrea Sitlinger, Michael A. Deal, Erwin Garcia, Dana K. Thompson, Tiffany M. Stewart, Grace MacDonald, Nicolas Devos, David L. Corcoran, Janet Staats, Jennifer Enzor, Kent J. Weinhold, Danielle M. Brander, J. Brice Weinberg, David B. Bartlett
Software Mentions: 2
Published: over 3 years ago

10.3390/cells8121570

Tristetraprolin/ZFP36 Regulates the Turnover of Autoimmune-Associated HLA-DQ mRNAs
Cited by: 4
Author(s): Laura Pisapia, Russell S. Hamilton, Federica Farina, Vito D’Agostino, Pasquale Barba, Maria Strazzullo, Alessandro Provenzani, Carmen Gianfrani, Giovanna Del Pozzo
Software Mentions: 2
Published: almost 5 years ago

10.1093/cercor/bhaa326

NECAB1 and NECAB2 are Prevalent Calcium-Binding Proteins of CB1/CCK-Positive GABAergic Interneurons
Cited by: 16
Author(s): Vivien Miczán, Krisztina Kelemen, Judit R Glavinics, Zsófia I. László, Benjámin Barti, Kata Kenesei, Máté Kisfali, István Katona
Software Mentions: 2
Published: about 4 years ago

10.1186/s13148-021-01091-9

Methylated markers accurately distinguish primary central nervous system lymphomas (PCNSL) from other CNS tumors
Cited by: 7
Author(s): Bradley M. Downs, Wanjun Ding, Leslie Cope, Christopher B. Umbricht, Wenge Li, Huihua He, Xiaokang Ke, Matthias Holdhoff, Chetan Bettegowda, Wenjing Tao, Saraswati Sukumar
Software Mentions: 2
Published: over 3 years ago

10.1101/mcs.a003293

A unique de novo gain-of-function variant in <i>CAMK4</i> associated with intellectual disability and hyperkinetic movement disorder
Cited by: 14
Author(s): Michael Zech, Daniel D. Lam, Sandrina Weber, Riccardo Berutti, Kamila Poláková, Petra Havránková, Anna Fečíková, Tim M. Strom, Evžen Ru̇žička, Robert Jech, Juliane Winkelmann
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-020-1027-9

Met-Flow, a strategy for single-cell metabolic analysis highlights dynamic changes in immune subpopulations
Cited by: 69
Author(s): Patricia J. Ahl, Richard A. Hopkins, Wen Wei Xiang, Bijin Au, Nivashini Kaliaperumal, Anna‐Marie Fairhurst, John E. Connolly
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-020-0890-8

SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation
Cited by: 16
Author(s): Wei Li, Kui Li, Ying Huang, Cong Shi, Wushu Hu, Yun Zhang, Qun‐Jie Zhang, Enhua Xia, Ge-Ran Hutang, Xun-Ge Zhu, Yunlong Liu, Yuan Liu, Yan Tong, Ting Zhu, Hui Huang, Dan Zhang, Yuan Zhao, Wenkai Jiang, Jie Yuan, Yongchao Niu, Chengwen Gao, Li‐Zhi Gao
Software Mentions: 2
Published: over 4 years ago

10.1016/j.dib.2020.106148

An automated data extraction and classification pipeline to identify a novel type of neuron within the dorsal striatum based on single-cell patch clamp and confocal imaging data
Cited by: 0
Author(s): Miaomiao Mao, Aditya Nair, George J Augustine
Software Mentions: 2
Published: about 4 years ago

10.1093/database/bay077

ChemDIS 2: an update of chemical-disease inference system
Cited by: 7
Author(s): Chun Wei Tung, Shan Shan Wang
Software Mentions: 2
Published: almost 7 years ago

10.1002/ece3.1986

18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species
Cited by: 83
Author(s): Aitor Albaina, Mikel Aguirre, David Abad, M.B. Santos, Andone Estonba
Software Mentions: 2
Published: almost 9 years ago

10.1002/ece3.6702

Species complex diversification by host plant use in an herbivorous insect: The source of Puerto Rican cactus mealybug pest and implications for biological control
Cited by: 8
Author(s): Daniel Poveda-Martínez, María Belén Aguirre, Guillermo A. Logarzo, Stephen D. Hight, Serguei V. Triapitsyn, Hilda Diaz-Sotero, M. D. Vitorino, Esteban Hasson
Software Mentions: 2
Published: over 4 years ago

10.1038/emi.2017.89

Diversity of Middle East respiratory syndrome coronaviruses in 109 dromedary camels based on full-genome sequencing, Abu Dhabi, United Arab Emirates
Cited by: 31
Author(s): Mohammed F. Yusof, Krista Queen, Yassir Mohammed Eltahir, Clinton R. Paden, Zulaikha Mohamed Abdel Hameed Al Hammadi, Ying Tao, Yán Li, Abdelmalik I. Khalafalla, Mǎng Shī, Jing Zhang, Muzammil Sayed Ahmed Elhaj Mohamed, M. H. Ahmed, Ihsaan Abdulwahab Azeez, Oum Keltoum Bensalah, Ziyada Swar Eldahab, Farida Ismail Al Hosani, Susan I. Gerber, Aron J. Hall, Suxiang Tong, Salama Suhail Al Muhairi
Software Mentions: 2
Published: almost 8 years ago

10.1155/2020/8979713

Data Mining and Systematic Pharmacology to Reveal the Mechanisms of Traditional Chinese Medicine in Recurrent Respiratory Tract Infections’ Treatment
Cited by: 5
Author(s): Changyong Luo, He Yu, Tao Yang, Chen Bai, Bing He, Yurou Yan, Tiegang Liu, Junhong Wang, Xiaohong Gu
Software Mentions: 2
Published: about 4 years ago

10.1111/eva.13254

Response to selection for parasitism of a suboptimal, low‐preference host in an aphid parasitoid
Cited by: 7
Author(s): Keith R. Hopper, Kameron T Wittmeyer, Kristen L. Kuhn, Kathryn A. Lanier
Software Mentions: 2
Published: over 3 years ago

10.12688/f1000research.10058.1

CanVar: A resource for sharing germline variation in cancer patients
Cited by: 9
Author(s): Daniel Chubb, Peter Broderick, Sara E. Dobbins, Richard S. Houlston
Software Mentions: 2
Published: almost 8 years ago

10.12688/f1000research.26848.2

CompoundHetVIP: Compound Heterozygous Variant Identification Pipeline
Cited by: 0
Author(s): Dustin Miller, Stephen R. Piccolo
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcell.2020.536389

The Distribution of Genes Associated With Regulated Cell Death Is Decoupled From the Mitochondrial Phenotypes Within Unicellular Eukaryotic Hosts
Cited by: 1
Author(s): Jérôme Teulière, Guillaume Bernard, Éric Bapteste
Software Mentions: 2
Published: about 4 years ago

10.3389/fcimb.2020.616814

Tonsil Mycobiome in PFAPA (Periodic Fever, Aphthous Stomatitis, Pharyngitis, Adenitis) Syndrome: A Case-Control Study
Cited by: 0
Author(s): Mysore V. Tejesvi, Terhi Tapiainen, Petri Vänni, Matti Uhari, Marko Suokas, Ulla Lantto, Petri Koivunen, Marjo Renko
Software Mentions: 2
Published: almost 4 years ago

10.3389/fncel.2018.00138

Inducible Knockout of the Cyclin-Dependent Kinase 5 Activator p35 Alters Hippocampal Spatial Coding and Neuronal Excitability
Cited by: 3
Author(s): Eriko Kamiki, Roman Boehringer, Denis Polygalov, Toshio Ohshima, Thomas J. McHugh
Software Mentions: 2
Published: over 6 years ago

10.3389/fchem.2019.00791

Neuraminidase-3 Is a Negative Regulator of LFA-1 Adhesion
Cited by: 13
Author(s): Md. Amran Howlader, Caishun Li, Chunxia Zou, Radhika Chakraberty, Njuacha Ebesoh, Christopher W. Cairo
Software Mentions: 2
Published: about 5 years ago

10.3389/fncom.2016.00029

Statistical Evaluation of Waveform Collapse Reveals Scale-Free Properties of Neuronal Avalanches
Cited by: 14
Author(s): Aleena Shaukat, Jean-Philippe Thivierge
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2021.671686

Whole Genome Sequencing Reveals Signatures for Artificial Selection for Different Sizes in Japanese Primitive Dog Breeds
Cited by: 2
Author(s): Guangqi Lyu, Chunyu Feng, Shiyu Zhu, Shuang Ren, Wanyi Dang, David M. Irwin, Zhe Wang
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2019.00708

Revisiting the Phylogenetic History of Helminths Through Genomics, the Case of the New Echinococcus oligarthrus Genome
Cited by: 11
Author(s): Lucas Luciano Maldonado, Juan Pablo Arrabal, Mara Cecília Rosenzvit, Guilherme Oliveira, Laura Kamenetzky
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.00407

Systematic Analysis of Non-coding RNAs Involved in the Angora Rabbit (Oryctolagus cuniculus) Hair Follicle Cycle by RNA Sequencing
Cited by: 33
Author(s): Bohao Zhao, Yang Chen, Shuaishuai Hu, Neng Yang, Manman Wang, Ming Liu, Jiali Li, Yeyi Xiao, Xinsheng Wu
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2018.00432

Dual Platform Long-Read RNA-Sequencing Dataset of the Human Cytomegalovirus Lytic Transcriptome
Cited by: 14
Author(s): Zsolt Balázs, Dóra Tombácz, Attila Szűcs, M Snyder, Zsolt Boldogkői
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2020.00948

Partial Amniote Sex Chromosomal Linkage Homologies Shared on Snake W Sex Chromosomes Support the Ancestral Super-Sex Chromosome Evolution in Amniotes
Cited by: 21
Author(s): Worapong Singchat, Syed Farhan Ahmad, Siwapech Sillapaprayoon, Narongrit Muangmai, Prateep Duengkae, Surin Peyachoknagul, Rebecca E. O’Connor, Darren K. Griffin, Kornsorn Srikulnath
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.00756

Comprehensive Profiles of mRNAs and miRNAs Reveal Molecular Characteristics of Multiple Organ Physiologies and Development in Pigs
Cited by: 5
Author(s): Muya Chen, Yi Yao, Yalan Yang, Min Zhu, Yijie Tang, Siyuan Liu, Kui Li, Zhonglin Tang
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2018.00236

Association of Transfer RNA Fragments in White Blood Cells With Antibody Response to Bovine Leukemia Virus in Holstein Cattle
Cited by: 10
Author(s): Tasia M. Taxis, Marcus E. Kehrli, Rui D’Orey-Branco, Eduardo Casas
Software Mentions: 2
Published: over 6 years ago

10.3389/fnhum.2013.00371

The visual mismatch negativity elicited with visual speech stimuli
Cited by: 22
Author(s): Benjamin T. Files, Edward T. Auer, Lynne E. Bernstein
Software Mentions: 2
Published: almost 12 years ago

10.3389/fimmu.2020.567348

Polymorphisms in STING Affect Human Innate Immune Responses to Poxviruses
Cited by: 11
Author(s): Richard B. Kennedy, Iana H. Haralambieva, Inna G. Ovsyannikova, Emily A. Voigt, Beth R. Larrabee, Daniel J. Schaid, Michael T. Zimmermann, Ann L. Oberg, Gregory A. Poland
Software Mentions: 2
Published: about 4 years ago

10.3389/fimmu.2021.668760

Resolvin D1 Improves the Treg/Th17 Imbalance in Systemic Lupus Erythematosus Through miR-30e-5p
Cited by: 22
Author(s): Cheng Tien, Shuai Ding, Shanshan Liu, Xiaojing Li, Xiaojun Tang, Lingyun Sun
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.01852

Transfer and Persistence of a Multi-Drug Resistance Plasmid in situ of the Infant Gut Microbiota in the Absence of Antibiotic Treatment
Cited by: 59
Author(s): Heidi Gumpert, Jessica Z. Kubicek-Sutherland, Andreas Porse, Nahid Karami, Christian Munck, Marius Linkevičius, Ingegerd Adlerberth, Agnes E. Wold, Dan I. Andersson, Morten Otto Alexander Sommer
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2016.01546

Photosynthetic Versatility in the Genome of Geitlerinema sp. PCC 9228 (Formerly Oscillatoria limnetica ‘Solar Lake’), a Model Anoxygenic Photosynthetic Cyanobacterium
Cited by: 27
Author(s): Sharon L. Grim, Gregory J. Dick
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2019.01011

Regional and Microenvironmental Scale Characterization of the Zostera muelleri Seagrass Microbiome
Cited by: 45
Author(s): Valentina Hurtado-McCormick, Tim Kahlke, Katherina Petrou, Thomas C. Jeffries, Peter J. Ralph, Justin R. Seymour
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2020.00179

A Workflow for Protein Structure Determination From Thin Crystal Lamella by Micro-Electron Diffraction
Cited by: 20
Author(s): Emma V. Beale, David Waterman, Corey W. Hecksel, Jason M. van Rooyen, James B. Gilchrist, James M. Parkhurst, Felix de Haas, Bart Buijsse, Gwyndaf Evans, Peijun Zhang
Software Mentions: 2
Published: over 4 years ago

10.3389/fncir.2016.00032

Feed-Forward Propagation of Temporal and Rate Information between Cortical Populations during Coherent Activation in Engineered In Vitro Networks
Cited by: 24
Author(s): Thomas B. DeMarse, Longfa Pan, Sankaraleengam Alagapan, Gregory J. Brewer, Bruce C. Wheeler
Software Mentions: 2
Published: over 8 years ago

10.3389/fninf.2021.596443

A Quick and Easy Way to Estimate Entropy and Mutual Information for Neuroscience
Cited by: 10
Author(s): Mickaël Zbili, Sylvain Rama
Software Mentions: 2
Published: over 3 years ago

10.3389/fnins.2018.00351

Partially Overlapping Brain Networks for Singing and Cello Playing
Cited by: 27
Author(s): Melanie Segado, Avrum Hollinger, Joseph Thibodeau, Virginia B. Penhune, Robert J. Zatorre
Software Mentions: 2
Published: over 6 years ago

10.3389/fnins.2019.01407

Temporal Profile of Brain Gene Expression After Prey Catching Conditioning in an Anuran Amphibian
Cited by: 3
Author(s): Vern Lewis, Frédéric Laberge, Andreas Heyland
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.606820

Interpreting Sequence Variation in PDAC-Predisposing Genes Using a Multi-Tier Annotation Approach Performed at the Gene, Patient, and Cohort Level
Cited by: 3
Author(s): Michael T. Zimmermann, Angela Mathison, Tim Stodola, Douglas B. Evans, Jenica Abrudan, Wendy Demos, Michael Tschannen, Mohammed Aldakkak, Jennifer L. Geurts, Gwen Lomberk, Susan Tsai, Raúl Urrutia
Software Mentions: 2
Published: over 3 years ago

10.3389/fphar.2018.01427

Mid-Latency Auditory Evoked Potentials Differentially Predict Sedation and Drug Level Under Opioid and Hypnotic Agents
Cited by: 7
Author(s): Gernot G. Supp, Focko L. Higgen, Joerg F. Hipp, Andreas K. Engel, Markus Siegel
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2013.00456

Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes
Cited by: 27
Author(s): Stéphane Hacquard, Christine Delaruelle, Pascal Frey, Émilie Tisserant, Annegret Kohler, Sébastien Duplessis
Software Mentions: 2
Published: almost 12 years ago

10.3389/fpls.2018.00893

Comparative Aerial and Ground Based High Throughput Phenotyping for the Genetic Dissection of NDVI as a Proxy for Drought Adaptive Traits in Durum Wheat
Cited by: 101
Author(s): Giuseppe Emanuele Condorelli, Marco Maccaferri, Maria Newcomb, Pedro Andrade-Sánchez, Jeffrey W. White, Andrew N. French, Giuseppe Notarbartolo di Sciara, Roxanne Ward, Roberto Tuberosa
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2017.00654

Grapevine Grafting: Scion Transcript Profiling and Defense-Related Metabolites Induced by Rootstocks
Cited by: 65
Author(s): Walter Chitarra, Irene Perrone, C. Avanzato, Andrea Minio, Deborah Santini, G. Gilardi, Ilenia Siciliano, M. L. Gullino, Massimo Delledonne, F. Mannini, Giorgio Gambino
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2017.02081

microRNAs and Their Targets in Apple (Malus domestica cv. “Fuji”) Involved in Response to Infection of Pathogen Valsa mali
Cited by: 13
Author(s): Feng Hu, Ming Xu, Zheng Xiang, Tongyi Zhu, Xiaoning Gao, Lili Huang
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpls.2016.00525

Population Genomic Analysis Reveals Differential Evolutionary Histories and Patterns of Diversity across Subgenomes and Subpopulations of Brassica napus L.
Cited by: 24
Author(s): Élodie Gazave, Erica E. Tassone, Daniel C. Ilut, Megan Wingerson, Erwin Datema, H. Witsenboer, James B. Davis, David Grant, John M. Dyer, Matthew A. Jenks, J. Brown, Michael A. Gore
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2013.00362

Facile mutant identification via a single parental backcross method and application of whole genome sequencing based mapping pipelines
Cited by: 30
Author(s): Robert S. Allen, Kenlee Nakasugi, Rachel L. Doran, Anthony A. Millar, Peter M. Waterhouse
Software Mentions: 2
Published: almost 12 years ago

10.3389/fnsys.2014.00004

Back to front: cerebellar connections and interactions with the prefrontal cortex
Cited by: 117
Author(s): Thomas C. Watson, Nadine Becker, Richard Apps, Matthew W. Jones
Software Mentions: 2
Published: almost 11 years ago

10.1534/g3.115.024349

The Effects of Both Recent and Long-Term Selection and Genetic Drift Are Readily Evident in North American Barley Breeding Populations
Cited by: 20
Author(s): Ana M. Poets, Mohsen Mohammadi, Kiran Seth, Hongyun Wang, Thomas J. Y. Kono, Zhou Fang, Gary J. Muehlbauer, Kevin P. Smith, Peter L. Morrell
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.116.030486

Head Transcriptomes of Two Closely Related Species of Fruit Flies of the<i>Anastrepha fraterculus</i>Group Reveals Divergent Genes in Species with Extensive Gene Flow
Cited by: 14
Author(s): Victor Borges Rezende, Carlos Congrains, André Luís A. Lima, Emeline Boni Campanini, Aline Minali Nakamura, Janaína Lima de Oliveira, Samira Chahad‐Ehlers, Iderval Sobrinho, Reinaldo Alves de Brito
Software Mentions: 2
Published: about 8 years ago

10.1534/g3.116.032797

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci
Cited by: 107
Author(s): Christina A. Cuomo, Guus Bakkeren, H. M. Khalil, Vinay Panwar, David L. Joly, Rob Linning, Sharadha Sakthikumar, Xiao Ping Song, Xian Adiconis, Fan Lin, Jonathan M. Goldberg, Joshua Z. Levin, Sarah Young, Qiandong Zeng, Y. Anikster, Myron Bruce, Meinan Wang, Chuntao Yin, Brent D. McCallum, Les J. Szabo, Scot H. Hulbert, Xianming Chen, John P. Fellers
Software Mentions: 2
Published: almost 8 years ago

10.1534/g3.119.400930

High-Quality Genome Assembly and Annotation of the Big-Eye Mandarin Fish (<i>Siniperca knerii</i>)
Cited by: 14
Author(s): Liang Lu, Jianmin Zhao, Chenhong Li
Software Mentions: 2
Published: over 4 years ago

10.1093/g3journal/jkab076

Evidence of gene nucleotide composition favoring replication and growth in a fastidious plant pathogen
Cited by: 5
Author(s): Andreína I. Castillo, Rodrigo P. P. Almeida
Software Mentions: 2
Published: over 3 years ago

10.1093/g3journal/jkab154

Genomic patterns of structural variation among diverse genotypes of <i>Sorghum bicolor</i> and a potential role for deletions in local adaptation
Cited by: 6
Author(s): Kittikun Songsomboon, Zachary Brenton, James Heuser, Stephen Kresovich, Nadia Shakoor, Todd C. Mockler, Elizabeth A. Cooper
Software Mentions: 2
Published: over 3 years ago

10.1534/genetics.117.300448

Assessing the Relationship of Ancient and Modern Populations
Cited by: 16
Author(s): Joshua G. Schraiber
Software Mentions: 2
Published: almost 7 years ago

10.1186/gb-2007-8-12-r262

Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a species-general network of aging and metabolic genes
Cited by: 121
Author(s): Christina Curtis, Gary N. Landis, Donna G. Folk, Nancy B. Wehr, Nicholas Hoe, Morris Waskar, Diana Abdueva, Dmitriy Skvortsov, Daniel Ford, Allan Luu, Ananth Badrinath, Rodney L. Levine, Timothy J. Bradley, Simon Tavaré, John Tower
Software Mentions: 2
Published: almost 18 years ago

10.1186/gb-2010-11-4-r38

Phylogenetic detection of numerous gene duplications shared by animals, fungi and plants
Cited by: 20
Author(s): Xin Zhou, Zhenguo Lin, Hong Mā
Software Mentions: 2
Published: almost 15 years ago

10.1186/gb-2011-12-10-r103

Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer
Cited by: 176
Author(s): Wigard P. Kloosterman, Marlous Hoogstraat, Oscar Paling, Masoumeh Tavakoli-Yaraki, Ivo Renkens, Joost S.P. Vermaat, Markus J. van Roosmalen, Stef van Lieshout, Isaäc J Nijman, Wijnand M. Roessingh, Ruben van ‘t Slot, José van de Belt, Victor Guryev, Marco J. Koudijs, Emile E. Voest, Edwin Cuppen
Software Mentions: 2
Published: almost 14 years ago

10.1186/gb-2013-14-8-r92

A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon
Cited by: 22
Author(s): Jingyu Zhang, Zhiwei Mao, Kang Chong
Software Mentions: 2
Published: almost 12 years ago

10.1186/gb-2013-14-12-r142

The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes
Cited by: 74
Author(s): Sarah D. Kocher, Li Cai, Wei Yang, Hao Tan, Soojin V. Yi, Xingyu Yang, Hopi E. Hoekstra, Guojie Zhang, Naomi E. Pierce, Douglas W. Yu
Software Mentions: 2
Published: almost 12 years ago

10.1186/gb-2014-15-5-r74

SoxNeuro orchestrates central nervous system specification and differentiation in Drosophila and is only partially redundant with Dichaete
Cited by: 32
Author(s): Enrico Ferrero, Bettina Fischer, Steven Russell
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13059-015-0727-9

Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution
Cited by: 107
Author(s): Pelin Sahlén, Ilgar Abdullayev, Daniel Ramsköld, Liudmila Matskova, Nemanja Rilakovic, Britta Lötstedt, Thomas Albert, Joakim Lundeberg, Rickard Sandberg
Software Mentions: 2
Published: over 9 years ago

10.1186/s13059-017-1385-x

A Reproducibility-Based Computational Framework Identifies an Inducible, Enhanced Antiviral State in Dendritic Cells from HIV-1 Elite Controllers
Cited by: 34
Author(s): Enrique Martín‐Gayo, Michael B. Cole, Kellie E. Kolb, Zhengyu Ouyang, Jacqueline Cronin, Samuel W. Kazer, José Ordovás-Montañés, Mathias Lichterfeld, Bruce D. Walker, Nir Yosef, Alex K. Shalek, Xu G. Yu
Software Mentions: 2
Published: almost 7 years ago

10.1093/gbe/evv126

A Novel Terminal-Repeat Retrotransposon in Miniature (TRIM) Is Massively Expressed in<i>Echinococcus multilocularis</i>Stem Cells
Cited by: 18
Author(s): Uriel Koziol, Santiago Radío, Pablo Smircich, Magdalena Zarowiecki, Cecilia Fernández, Klaus Brehm
Software Mentions: 2
Published: over 9 years ago

10.1093/gigascience/giaa034

CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
Cited by: 3
Author(s): Heiner Kuhl, Ling Li, Sven Wuertz, Matthias Stöck, Xu‐Fang Liang, Christophe Klopp
Software Mentions: 2
Published: over 4 years ago

10.1016/j.heares.2020.108068

Effects of age on electrophysiological measures of cochlear synaptopathy in humans
Cited by: 13
Author(s): Samuele Carcagno, Christopher J. Plack
Software Mentions: 2
Published: about 4 years ago

10.1186/s41065-017-0043-3

Genotypic and phenotypic evaluation of off-type grasses in hybrid Bermudagrass [Cynodon dactylon (L.) Pers. x C. transvaalensis Burtt-Davy] putting greens using genotyping-by-sequencing and morphological characterization
Cited by: 6
Author(s): Eric H. Reasor, James T. Brosnan, Margaret Staton, Thomas Lane, Robert N. Trigiano, Phillip A. Wadl, Joann A. Conner, Brian M. Schwartz
Software Mentions: 2
Published: over 7 years ago

10.1038/hdy.2016.107

The comparative landscape of duplications in Heliconius melpomene and Heliconius cydno
Cited by: 16
Author(s): Ana Pinharanda, Simon H. Martin, S. G. Barker, Davey Jw, Chris D. Jiggins
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41438-018-0021-6

Genotyping-by-sequencing application on diploid rose and a resulting high-density SNP-based consensus map
Cited by: 23
Author(s): Muqing Yan, David Byrne, Patricia E. Klein, Jianping Yang, Qianni Dong, Natalie Anderson
Software Mentions: 2
Published: over 6 years ago

10.1002/hbm.25010

Quality and denoising in real‐time functional magnetic resonance imaging neurofeedback: A methods review
Cited by: 34
Author(s): Stephan Heunis, Rolf Lamerichs, Svitlana Zinger, César Caballero-Gaudes, Jacobus F. A. Jansen, Bert Aldenkamp, Marcel Breeuwer
Software Mentions: 2
Published: over 4 years ago

10.1002/hbm.25009

Metastable neural dynamics underlies cognitive performance across multiple behavioural paradigms
Cited by: 25
Author(s): Thomas H. Alderson, Arun L.W. Bokde, J. A. Scott Kelso, Liam Maguire, Damien Coyle
Software Mentions: 2
Published: over 4 years ago

10.1007/s00251-019-01118-9

Conservation of molecular and cellular phenotypes of invariant NKT cells between humans and non-human primates
Cited by: 8
Author(s): Krystle K. Q. Yu, Damien B. Wilburn, Joshua A. Hackney, Patricia A. Darrah, Kathryn E. Foulds, Cyan James, Malisa T. Smith, Lichen Jing, Robert A. Seder, Mario Roederer, David M. Koelle, Willie J. Swanson, Chetan Seshadri
Software Mentions: 2
Published: over 5 years ago

10.1093/ibd/izaa188

Inflammatory Bowel Disease–Associated Changes in the Gut: Focus on Kazan Patients
Cited by: 22
Author(s): Giuseppe Lo Sasso, Lusine Khachatryan, Athanasios Kondylis, James N. D. Battey, Nicolas Sierro, Natalia Danilova, Tatiana V. Grigoryeva, Maria Markelova, Dilyara Khusnutdinova, Alexander Laikov, И. И. Салафутдинов, Yulia D Romanova, Mariia N Siniagina, Ilya Yu. Vasiliev, Eugenia A. Boulygina, Valeriya V. Solovyeva, Ekaterina Garanina, Kristina V. Kitaeva, Konstantin Ivanov, Darja S Chulpanova, Konstantin Kletenkov, Alina Valeeva, А. Х. Одинцова, M. D. Ardatskaya, Р. А. Абдулхаков, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng, С. Р. Абдулхаков
Software Mentions: 2
Published: over 4 years ago

10.3390/insects12050409

Effects of Multi-Component Backgrounds of Volatile Plant Compounds on Moth Pheromone Perception
Cited by: 2
Author(s): Lucie Conchou, Philippe Lucas, Nina Deisig, Elodie Demondion, Michel Renou
Software Mentions: 2
Published: over 3 years ago

10.1016/j.jbc.2021.101003

Development of a specific live-cell assay for native autophagic flux
Cited by: 7
Author(s): Nathaniel Safren, Elizabeth M.H. Tank, Aatika Malik, Jason P. Chua, Nicholas Santoro, Sami J. Barmada
Software Mentions: 2
Published: about 3 years ago

10.1016/j.jbc.2021.101031

Epistatic interactions promote persistence of NS3-Q80K in HCV infection by compensating for protein folding instability
Cited by: 1
Author(s): G. Dultz, Sanjay Kumar Srikakulam, Michael Konetschnik, Tetsuro Shimakami, Nadezhda T. Doncheva, Julia Dietz, Christoph Sarrazin, Ricardo M. Biondi, Stefan Zeuzem, Robert Tampé, Olga Kalinina, Christoph Welsch
Software Mentions: 2
Published: about 3 years ago

10.3390/jcm9082411

Effect of Manual Therapy and Splint Therapy in People with Temporomandibular Disorders: A Preliminary Study
Cited by: 14
Author(s): Gemma Victoria Espí-López, Anna Arnal‐Gómez, Alba Cuerda Del Pino, José Benavent-Corai, Pilar Serra-Añó, Marta Inglés
Software Mentions: 2
Published: over 4 years ago

10.1093/jxb/eru141

Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato
Cited by: 190
Author(s): Ning Liu, Shan Wu, Jason Van Houten, Ying Wang, Biao Ding, Zhangjun Fei, Thomas H. Clarke, Jason W. Reed, Esther van der Knaap
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1000560

Draft Genome Sequencing of Giardia intestinalis Assemblage B Isolate GS: Is Human Giardiasis Caused by Two Different Species?
Cited by: 244
Author(s): Oscar Franzén, Jon Jerlström-Hultqvist, Elsie Castro, Ellen Sherwood, Johan Ankarklev, David S. Reiner, Daniel Palm, Jan O. Andersson, Björn Andersson, Staffan G. Svärd
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.ppat.1002151

Transformation of Natural Genetic Variation into Haemophilus Influenzae Genomes
Cited by: 69
Author(s): Joshua Chang Mell, Svetlana Shumilina, Ira M. Hall, Rosemary J. Redfield
Software Mentions: 2
Published: over 13 years ago

10.1007/s13238-018-0572-1

Dgcr8 deletion in the primitive heart uncovered novel microRNA regulating the balance of cardiac-vascular gene program
Cited by: 10
Author(s): Xi Chen, Lin Wang, Rujin Huang, Hui Qiu, Peizhe Wang, Da‐Ren Wu, Yonglin Zhu, Ming Jia, Yangming Wang, Jianbin Wang, Jie Na
Software Mentions: 2
Published: over 6 years ago

10.1098/rsos.191900

Signals interpreted as archaic introgression appear to be driven primarily by faster evolution in Africa
Cited by: 11
Author(s): William Amos
Software Mentions: 2
Published: over 4 years ago

10.1126/sciadv.abe1969

Microrheology reveals simultaneous cell-mediated matrix stiffening and fluidization that underlie breast cancer invasion
Cited by: 17
Author(s): Brad A. Krajina, Bauer L. LeSavage, Julien G. Roth, Audrey Zhu, Pamela C. Cai, Andrew J. Spakowitz, Sarah C. Heilshorn
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41597-019-0024-7

Geo-referenced population-specific microsatellite data across American continents, the MacroPopGen Database
Cited by: 24
Author(s): Elizabeth R. Lawrence, Javiera N. Benavente, Jean‐Michel Matte, Kia Marin, Zachery R. R. Wells, Thaïs A. Bernos, Nia Krasteva, Andrew Habrich, Gabrielle A. Nessel, Ramela Arax Koumrouyan, Dylan J. Fraser
Software Mentions: 2
Published: over 5 years ago

10.1038/srep05421

Ataxia telangiectasia derived iPS cells show preserved x-ray sensitivity and decreased chromosomal instability
Cited by: 34
Author(s): Yoshihiro Fukawatase, Masashi Toyoda, Koji Okamura, Ken Nakamura, Kazuhiko Nakabayashi, Shuji Takada, Mayu Yamazaki-Inoue, Akira Masuda, Michiyo Nasu, Kenichiro Hata, Kazunori Hanaoka, Akon Higuchi, Kaiyo Takubo, Akihiro Umezawa
Software Mentions: 2
Published: over 10 years ago

10.1038/srep10918

Opioid Exacerbation of Gram-positive sepsis, induced by Gut Microbial Modulation, is Rescued by IL-17A Neutralization
Cited by: 73
Author(s): Jingjing Meng, Santanu Banerjee, Dan Li, Gregory M. Sindberg, Fuyuan Wang, Jing Ma, Sabita Roy
Software Mentions: 2
Published: over 9 years ago

10.1038/srep14941

Profiling RNA editing in human tissues: towards the inosinome Atlas
Cited by: 187
Author(s): Ernesto Picardi, Caterina Manzari, Francesca Mastropasqua, Italia Aiello, Anna Maria D’Erchia, Graziano Pesole
Software Mentions: 2
Published: about 9 years ago

10.1038/srep17763

Identification and comparative analysis of complement C3-associated microRNAs in immune response of Apostichopus japonicus by high-throughput sequencing
Cited by: 19
Author(s): Lei Zhong, Zhen Feng, Yu Zhai, Yuan Cao, Si Zhang, Yaqing Chang
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep24350

Differential neural mechanisms for early and late prediction error detection
Cited by: 12
Author(s): Rahim Malekshahi, Anil K. Seth, Amalia Papanikolaou, Zenon Mathews, Niels Birbaumer, Paul F. M. J. Verschure, Andrea Caria
Software Mentions: 2
Published: over 8 years ago

10.1038/srep25945

Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study
Cited by: 173
Author(s): Christian Milani, Andrea Ticinesi, J. Gerritsen, Antonio Nouvenne, Gabriele Andrea Lugli, Leonardo Mancabelli, Francesca Turroni, Sabrina Duranti, Marta Mangifesta, Alice Viappiani, Chiara Ferrario, Marcello Maggio, Fulvio Lauretani, Willem M. de Vos, Douwe van Sinderen, Tiziana Meschi, Marco Ventura
Software Mentions: 2
Published: over 8 years ago

10.1038/srep26719

Involvement of Auxin and Brassinosteroid in Dwarfism of Autotetraploid Apple (Malus × domestica)
Cited by: 69
Author(s): Yue Ma, Xue Hou, Lei Zhang, Feng Zhang, C. Ou, Feng Wang, Zhihong Zhang
Software Mentions: 2
Published: over 8 years ago

10.1038/srep27040

Homoeologue expression insights into the basis of growth heterosis at the intersection of ploidy and hybridity in Cyprinidae
Cited by: 22
Author(s): Li Ren, Wuhui Li, Min Tao, Qinbo Qin, Jing Luo, Jing Chai, Chenchen Tang, Jun Xiao, Xiaojun Tang, Guoliang Lin, Chun Zhang, Wei Duan, Yunhan Hong, Shaojun Liu
Software Mentions: 2
Published: over 8 years ago

10.1038/srep40577

Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut
Cited by: 129
Author(s): Manish K. Pandey, Gaurav Agarwal, Sandip M. Kale, Josh Clevenger, Spurthi N. Nayak, Manda Sriswathi, Annapurna Chitikineni, Carolina Chavarro, Xiaoping Chen, Hari D. Upadhyaya, Manish K. Vishwakarma, S. C. de M. Leal-Bertioli, Xuanqiang Liang, David J. Bertioli, Bao‐Zhu Guo, Scott A. Jackson, Peggy Ozias‐Akins, Rajeev K. Varshney
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep40579

Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts
Cited by: 160
Author(s): Matthew J. Neave, Craig Michell, Amy Apprill, Christian R. Voolstra
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep44283

Analysis of Campylobacter jejuni infection in the gnotobiotic piglet and genome-wide identification of bacterial factors required for infection
Cited by: 15
Author(s): Stefan P. W. de Vries, Aileen Linn, Kareen Macleod, Amanda MacCallum, Simon P. Hardy, Gill Douce, E.D. Watson, Mark P. Dagleish, H. Thompson, Andy Stevenson, David J. Kennedy, Abiyad Baig, Chris Coward, Duncan J. Maskell, David George Emslie Smith, A. Grant, Paul Everest
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-00971-6

Gene expression profiling describes the genetic regulation of Meloidogyne arenaria resistance in Arachis hypogaea and reveals a candidate gene for resistance
Cited by: 27
Author(s): Josh Clevenger, Ye Chu, Larissa Arrais Guimarães, Thiago Maia, David J. Bertioli, S. C. de M. Leal-Bertioli, Patricia Timper, C. Corley Holbrook, Peggy Ozias‐Akins
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-01543-4

Integrated single- and two-photon light sheet microscopy using accelerating beams
Cited by: 34
Author(s): Peeter Piksarv, Dominik Marti, Tuan Le, Angelika Unterhuber, Lindsey H. Forbes, Melissa R. Andrews, A. Stingl, Wolfgang Drexler, Peter E. Andersen, Kishan Dholakia
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-10515-7

A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei
Cited by: 32
Author(s): David B. Jones, Dean R. Jerry, Mehar S. Khatkar, Herman W. Raadsma, H. van der Steen, Jeffrey Prochaska, Sylvain Forêt, Kyall R. Zenger
Software Mentions: 2
Published: about 7 years ago