pypi: custom | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0152851

Building a Robust Tumor Profiling Program: Synergy between Next-Generation Sequencing and Targeted Single-Gene Testing
Cited by: 9
Author(s): Matthew Hiemenz, Stephan Kadauke, David Lieberman, David B. Roth, Jianhua Zhao, Christopher D. Watt, Robert Daber, Jennifer J.D. Morrissette
Software Mentions: 1
Published: over 8 years ago

10.1523/JNEUROSCI.0955-20.2020

Nonhuman Primates Satisfy Utility Maximization in Compliance with the Continuity Axiom of Expected Utility Theory
Cited by: 12
Author(s): Simone Ferrari-Toniolo, Philipe M. Bujold, Fabian Grabenhorst, Raymundo Báez-Mendoza, Wolfram Schultz
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0227525

Phylogenomics indicates the “living fossil” Isoetes diversified in the Cenozoic
Cited by: 18
Author(s): Daniel P. Wood, Guillaume Besnard, David J. Beerling, Colin P. Osborne, Pascal‐Antoine Christin
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0115965

Compete to Play: Trade-Off with Social Contact in Long-Tailed Macaques (Macaca fascicularis)
Cited by: 11
Author(s): Sébastien Ballesta, Gilles Reymond, Mathieu Pozzobon, Jean‐René Duhamel
Software Mentions: 1
Published: almost 10 years ago

10.1111/evo.13421

Phanerozoic survivors: Actinopterygian evolution through the Permo‐Triassic and Triassic‐Jurassic mass extinction events
Cited by: 23
Author(s): Fiann M. Smithwick, Thomas L. Stubbs
Software Mentions: 1
Published: almost 7 years ago

10.12688/f1000research.8237.1

Advancing cardiovascular tissue engineering
Cited by: 17
Author(s): George A. Truskey
Software Mentions: 1
Published: over 8 years ago

10.12688/f1000research.7485.1

Prediction of fine-tuned promoter activity from DNA sequence
Cited by: 4
Author(s): Geoffrey H. Siwo, Andrew K. Rider, Aiping Tan, Richard S. Pinapati, Scott J. Emrich, Nitesh V. Chawla, Michael T. Ferdig
Software Mentions: 1
Published: almost 9 years ago

10.1155/2016/3989310

Diabetic Macular Ischemia Diagnosis: Comparison between Optical Coherence Tomography Angiography and Fluorescein Angiography
Cited by: 47
Author(s): José Maurício Botto de Barros Garcia, Talita Toledo Lima, Ricardo Noguera Louzada, Alessandra Thomé Rassi, David Leonardo Cruvinel Isaac, Marcos Pereira de Ávila
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2164-11-109

Erratum to: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
Cited by: 51
Author(s): Erica Mica, Viviana Piccolo, Massimo Delledonne, Alberto Ferrarini, Mario Pezzotti, Cesare Casati, Cristian Del Fabbro, Giorgio Valle, Alberto Policriti, Michèle Morgante, Graziano Pesole, Mario Enrico Pè, David S. Horner
Software Mentions: 1
Published: almost 15 years ago

10.3389/fnagi.2021.679585

Repetitive Transcranial Magnetic Stimulation of the Dorsolateral Prefrontal Cortex Modulates Electroencephalographic Functional Connectivity in Alzheimer’s Disease
Cited by: 4
Author(s): Yi Guo, Di Ge, Brenton Hordacre, Xiaolin Su, Nan Yan, Siyan Chen, Huixia Ren, Xue Shi, Min Cai, Sirui Zhang, Xiaoyong Lan
Software Mentions: 1
Published: over 3 years ago

10.3389/fnbeh.2019.00087

Optogenetic Stimulation of the Basolateral Amygdala Increased Theta-Modulated Gamma Oscillations in the Hippocampus
Cited by: 13
Author(s): Nathan S. Ahlgrim, Joseph R. Manns
Software Mentions: 1
Published: over 5 years ago

10.3389/fnbeh.2018.00207

Neural Activity Predicts Reaction in Primates Long Before a Behavioral Response
Cited by: 10
Author(s): Mohsen Parto Dezfouli, Mohammad Bagher Khamechian, Stefan Treue, Moein Esghaei, Mohammad Reza Daliri
Software Mentions: 1
Published: about 6 years ago

10.3389/fnbeh.2014.00421

Distinct neuronal populations in the basal forebrain encode motivational salience and movement
Cited by: 28
Author(s): Irene Avila, Shih‐Chieh Lin
Software Mentions: 1
Published: almost 10 years ago

10.3389/fnbeh.2015.00284

Cholinergic and ghrelinergic receptors and KCNQ channels in the medial PFC regulate the expression of palatability
Cited by: 16
Author(s): Marc A. Parent, Linda M. Amarante, Kyra Swanson, Mark Laubach
Software Mentions: 1
Published: about 9 years ago

10.3389/fbioe.2020.00770

Differences in Muscle Synergy Symmetry Between Subacute Post-stroke Patients With Bioelectrically-Controlled Exoskeleton Gait Training and Conventional Gait Training
Cited by: 18
Author(s): Chun Kwang Tan, Hideki Kadone, Hiroki Watanabe, Aiki Marushima, Yasushi Hada, Masashi Yamazaki, Yoshiyuki Sankai, Akira Matsumura, Kenji Suzuki
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0119489

Ensemble Empirical Mode Decomposition Analysis of EEG Data Collected during a Contour Integration Task
Cited by: 34
Author(s): Karema Al-Subari, Saad Al-Baddai, Ana Maria Tomé, Gregor Volberg, Rainer Hammwöhner
Software Mentions: 1
Published: over 9 years ago

10.3389/fcell.2020.00536

Ultrarapid Delayed Rectifier K+ Channelopathies in Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes
Cited by: 7
Author(s): Sarah Hilderink, Harsha D. Devalla, Leontien Bosch, Ronald Wilders, Arie O. Verkerk
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0205867

HP1B is a euchromatic Drosophila HP1 homolog with links to metabolism
Cited by: 8
Author(s): Benjamin B. Mills, Andrew D. Thomas, Nicole C. Riddle
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0038173

The Song Must Go On: Resilience of the Songbird Vocal Motor Pathway
Cited by: 21
Author(s): Barish B. Poole, Jeffrey E. Markowitz, Timothy J. Gardner
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-15-212

A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes
Cited by: 42
Author(s): Shawn R. Starkenburg, Kyungyoon J. Kwon, Ramesh K. Jha, Cedar McKay, Michael A. Jacobs, Olga Chertkov, Scott N. Twary, Gabrielle Rocap, Rose Ann Cattolico
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0071554

Systematic Pharmacogenomics Analysis of a Malay Whole Genome: Proof of Concept for Personalized Medicine
Cited by: 24
Author(s): Mohd Zaki Salleh, Lay Kek Teh, Lian Shien Lee, Rose Iszati Ismet, Ashok Patowary, Kandarp Joshi, Asher Pasha, Azni Zain Ahmed, Roziah Mohd Janor, Ahmad Sazali Hamzah, Aishah Adam, Khalid Yusoff, Boon Peng Hoh, Fazleen Haslinda Mohd Hatta, Mohamad Izwan Ismail, Vinod Scaria, Sridhar Sivasubbu
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0031433

Auditory Function in the Tc1 Mouse Model of Down Syndrome Suggests a Limited Region of Human Chromosome 21 Involved in Otitis Media
Cited by: 8
Author(s): Stephanie Kuhn, Neil J. Ingham, Selina Pearson, Susan Gribble, Stephen Clayton, Karen P. Steel, Walter Marcotti
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-15-1073

Edge effects in calling variants from targeted amplicon sequencing
Cited by: 13
Author(s): Ravi Vijaya Satya, John DiCarlo
Software Mentions: 1
Published: almost 11 years ago

10.3389/fcimb.2021.638014

Harnessing Colon Chip Technology to Identify Commensal Bacteria That Promote Host Tolerance to Infection
Cited by: 23
Author(s): Francesca S. Gazzaniga, Diogo M. Camacho, Meng Wu, Matheus F Silva Palazzo, Alexandre Dinis, Francis Nadine Grafton, Mark Cartwright, Michael Super, Dennis L. Kasper, Donald E. Ingber
Software Mentions: 1
Published: over 3 years ago

10.3389/fncel.2019.00315

Group I mGluR-Mediated Activation of Martinotti Cells Inhibits Local Cortical Circuitry in Human Cortex
Cited by: 14
Author(s): Tim Kroon, Julia Dawitz, Ioannis Kramvis, Jasper J. Anink, Joshua Obermayer, Matthijs B. Verhoog, René Wilbers, Natalia A. Goriounova, Sander Idema, Johannes C. Baayen, Eleonora Aronica, Huibert D. Mansvelder, Rhiannon M. Meredith
Software Mentions: 1
Published: over 5 years ago

10.1523/ENEURO.0190-19.2019

Dopamine Depletion Affects Vocal Acoustics and Disrupts Sensorimotor Adaptation in Songbirds
Cited by: 12
Author(s): Varun Saravanan, Lukas A. Hoffmann, Amanda L. Jacob, Gordon J Berman, Samuel J. Sober
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-12-521

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing
Cited by: 51
Author(s): Lingling Gao, James K. Hane, Lars G. Kamphuis, Rhonda C. Foley, Bu‐Jun Shi, Craig A. Atkins, Karam B. Singh
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-13-94

Genome wide expression profiling of two accession of G. herbaceum L. in response to drought
Cited by: 44
Author(s): Alok Ranjan, Deepti Nigam, Mehar Hasan Asif, Ruchi Singh, Sanjay Ranjan, Shrikant Mantri, Neha Pandey, Ila Trivedi, Krishan Mohan, Satya Narayan Jena, Bhupendra Koul, Rakesh Tuli, Uday V. Pathre, Samir V. Sawant
Software Mentions: 1
Published: over 12 years ago

10.3389/fncom.2015.00092

Role of the site of synaptic competition and the balance of learning forces for Hebbian encoding of probabilistic Markov sequences
Cited by: 4
Author(s): Kristofer E. Bouchard, Surya Ganguli, Michael S. Brainard
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2019.00661

Differential microRNA Expression in Porcine Endometrium Involved in Remodeling and Angiogenesis That Contributes to Embryonic Implantation
Cited by: 17
Author(s): Linjun Hong, Ruize Liu, Xiwu Qiao, Xingwang Wang, Shouqi Wang, Jiaqi Li, Zhenfang Wu, Hao Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-020-6625-x

Conserved associations between G-quadruplex-forming DNA motifs and virulence gene families in malaria parasites
Cited by: 16
Author(s): Hunter L. Gage, Catherine J. Merrick
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-15-881

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes
Cited by: 116
Author(s): Andreas Steiner, David Stucki, Mireia Coscollá, Sònia Borrell, Sébastien Gagneux
Software Mentions: 1
Published: about 10 years ago

10.1107/S2052252520005977

A simple model for vacancy order and disorder in defective half-Heusler systems
Cited by: 23
Author(s): Nikolaj Roth, Tiejun Zhu, Bo B. Iversen
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2019.00646

Analysis of Long Non-Coding RNA and mRNA Expression Profiling in Immature and Mature Bovine (Bos taurus) Testes
Cited by: 52
Author(s): Yuan Gao, Shipeng Li, Zhenyu Lai, Ziqing Zhou, Fei Wu, Yongzhen Huang, Xianyong Lan, Chuzhao Lei, Hong Chen, Ruihua Dang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.605292

Transcriptome and Small RNA Combined Sequencing Analysis of Cold Tolerance in Non-heading Chinese Cabbage
Cited by: 0
Author(s): Jin Wang, Qinxue Zhang, Xiong You, Xilin Hou
Software Mentions: 1
Published: over 3 years ago

10.1523/ENEURO.0229-18.2019

Optogenetically-Induced Population Discharge Threshold as a Sensitive Measure of Network Excitability
Cited by: 8
Author(s): David C. Klorig, Greg E. Alberto, Thuy K. Smith, Dwayne W. Godwin
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0074056

Genome-Wide Discovery and Information Resource Development of DNA Polymorphisms in Cassava
Cited by: 14
Author(s): Tetsuya Sakurai, Keiichi Mochida, Takuhiro Yoshida, Kenji Akiyama, Manabu Ishitani, Motoaki Seki, Kazuo Shinozaki
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0174299

Discovery of genome-wideSNPs by RAD-seqand the genetic diversity of captive hog deer (Axis porcinus)
Cited by: 4
Author(s): Wei Wang, Yan Huang, Jianqiu Yu, Jun Yi, Yu Qu, Maozhong Fu, Ang Chen, Hui Tang, Lili Niu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0024913

Multiple Statistical Analysis Techniques Corroborate Intratumor Heterogeneity in Imaging Mass Spectrometry Datasets of Myxofibrosarcoma
Cited by: 94
Author(s): Emrys A. Jones, Alexandra van Remoortere, René J. M. van Zeijl, Pancras C.W. Hogendoorn, Judith V.M.G. Bovée, André M. Deelder, Liam A. McDonnell
Software Mentions: 1
Published: about 13 years ago

10.1186/s12864-015-1403-x

Transcriptome analysis of cattle muscle identifies potential markers for skeletal muscle growth rate and major cell types
Cited by: 46
Author(s): Bing Guo, P. L. Greenwood, L. M. Café, Guanghong Zhou, Wangang Zhang, Brian P. Dalrymple
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2013.00126

Expression, covariation, and genetic regulation of miRNA Biogenesis genes in brain supports their role in addiction, psychiatric disorders, and disease
Cited by: 27
Author(s): Megan K. Mulligan, Candice DuBose, Junming Yue, Michael F. Miles, Lu Lu, Kristin Hamre
Software Mentions: 1
Published: almost 12 years ago

10.18632/oncotarget.11910

TumorNext: A comprehensive tumor profiling assay that incorporates high resolution copy number analysis and germline status to improve testing accuracy
Cited by: 8
Author(s): Phillip Gray, Huy Gia Vuong, Pei Ching Tsai, Hsaio Mei Lu, Wenbo Mu, Vickie Hsuan, Jayne Hoo, Swati Shah, Lisa Uyeda, Susanne Fox, Harshil Patel, Mike F. Janicek, Sandra M. Brown, Lavinia Dobrea, Lawrence D. Wagman, Elizabeth R. Plimack, Ranee Mehra, Erica A. Golemis, Marijo Bilušić, Matthew R. Zibelman, Aaron Elliott
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2014.00341

Methylated DNA is over-represented in whole-genome bisulfite sequencing data
Cited by: 54
Author(s): Lexiang Ji, Takahiko Sasaki, Xiaoxiao Sun, Ping Ma, Zachary A. Lewis, Robert J. Schmitz
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0201534

Genome-wide SNP discovery and evaluation of genetic diversity among six Chinese indigenous cattle breeds in Sichuan
Cited by: 13
Author(s): Wei Wang, Jia Gan, Donghui Fang, Hui Tang, Wang Huai, Jun Yi, Maozhong Fu
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2017.00026

Temporal Genetic Dynamics of an Experimental, Biparental Field Population of Phytophthora capsici
Cited by: 17
Author(s): Maryn O. Carlson, Élodie Gazave, Michael A. Gore, Christine D. Smart
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0190530

The centrosomin CM2 domain is a multi-functional binding domain with distinct cell cycle roles
Cited by: 12
Author(s): Y. Rose Citron, Carey J. Fagerstrom, Bettina Keszthelyi, Bo Huang, Nasser M. Rusan, Mark J. S. Kelly, David A. Agard
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-018-4736-4

Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep
Cited by: 15
Author(s): Yufang Liu, J. Zhang, Qiao Xu, Xiaolong Kang, Kejun Wang, Keliang Wu, Meiying Fang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0060604

Assembly of a Marine Viral Metagenome after Physical Fractionation
Cited by: 18
Author(s): Jennifer R. Brum, Alexander I. Culley, Grieg F. Steward
Software Mentions: 1
Published: over 11 years ago

10.3389/fgene.2020.00488

GC-AG Introns Features in Long Non-coding and Protein-Coding Genes Suggest Their Role in Gene Expression Regulation
Cited by: 16
Author(s): Monah Abou Alezz, Ludovica Celli, Giulia Belotti, Antonella Lisa, Silvia Bione
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2015.00244

How well do whole exome sequencing results correlate with medical findings? A study of 89 Mayo Clinic Biobank samples
Cited by: 8
Author(s): Sumit Middha, Noralane M. Lindor, Shannon K. McDonnell, Janet E. Olson, Kiley J. Johnson, Eric D. Wieben, Gianrico Farrugia, James R. Cerhan, Stephen N. Thibodeau
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0113908

HIV-1 Infection Causes a Down-Regulation of Genes Involved in Ribosome Biogenesis
Cited by: 22
Author(s): Claudia L. Kleinman, Margherita Doria, Elisa Orecchini, Erica Giuliani, Silvia Galardi, Nicolas Jay, Alessandro Michienzi
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0087053

Identification of the Maize Gravitropism Gene lazy plant1 by a Transposon-Tagging Genome Resequencing Strategy
Cited by: 23
Author(s): Thomas P. Howard, Andy Hayward, Anthony Tordillos, Christopher A Fragoso, Marlene Aparecida Moreno, Joseph M. Tohme, Albert P. Kausch, John P. Mottinger, Stephen L. Dellaporta
Software Mentions: 1
Published: almost 11 years ago

10.3389/fnhum.2015.00007

Brain Responses to Musical Feature Changes in Adolescent Cochlear Implant Users
Cited by: 35
Author(s): Bjørn Petersen, Ethan Weed, Pascale Sandmann, Elvira Brattico, Mads Hansen, Stine Derdau Sørensen, Peter Vuust
Software Mentions: 1
Published: almost 10 years ago

10.3389/fnhum.2016.00133

Behavioral and EEG Evidence for Auditory Memory Suppression
Cited by: 11
Author(s): Maya E. Cano, Robert T. Knight
Software Mentions: 1
Published: over 8 years ago

10.3389/fnhum.2019.00377

Single-Trial Mechanisms Underlying Changes in Averaged P300 ERP Amplitude and Latency in Military Service Members After Combat Deployment
Cited by: 5
Author(s): Amy Trongnetrpunya, Paul E. Rapp, Chao Wang, David Darmon, Michelle E. Costanzo, Dominic E. Nathan, Michael J. Roy, Christopher J. Cellucci, David O. Keyser
Software Mentions: 1
Published: about 5 years ago

10.3389/fnhum.2015.00419

A pilot study of disparity vergence and near dissociated phoria in convergence insufficiency patients before vs. after vergence therapy
Cited by: 17
Author(s): Tara L. Alvarez
Software Mentions: 1
Published: over 9 years ago

10.3389/fnhum.2016.00504

Pre-stimulus Alpha Oscillations and Inter-subject Variability of Motor Evoked Potentials in Single- and Paired-Pulse TMS Paradigms
Cited by: 38
Author(s): Zafer İşcan, Maria Nazarova, Tommaso Fedele, Evgeny Blagovechtchenski, Vadim V. Nikulin
Software Mentions: 1
Published: about 8 years ago

10.3389/fnhum.2020.00036

Children With Unilateral Cerebral Palsy Utilize More Cortical Resources for Similar Motor Output During Treadmill Gait
Cited by: 17
Author(s): Matthew R. Short, Diane L. Damiano, Yushin Kim, Thomas C. Bulea
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-9-345

Highly conserved gene order and numerous novel repetitive elements in genomic regions linked to wing pattern variation in Heliconius butterflies
Cited by: 50
Author(s): Riccardo Papa, Clayton M. Morrison, James R. Walters, Brian A. Counterman, Rui Chen, Georg Halder, Laura Ferguson, Nicola Chamberlain, Richard H. ffrench-Constant, Durrell D. Kapan, Chris D. Jiggins, Robert D. Reed, W. Owen McMillan
Software Mentions: 1
Published: almost 17 years ago

10.3389/fnhum.2016.00154

Differential Processing of Consonance and Dissonance within the Human Superior Temporal Gyrus
Cited by: 16
Author(s): Francine Foo, David King-Stephens, Peter B. Weber, Kenneth D. Laxer, Josef Parvizi, Robert T. Knight
Software Mentions: 1
Published: over 8 years ago

10.3389/fnhum.2018.00217

Fatigue Influences the Recruitment, but Not Structure, of Muscle Synergies
Cited by: 29
Author(s): Pablo Ortega-Auriol, Thor F. Besier, Winston D. Byblow, Angus J. C. McMorland
Software Mentions: 1
Published: over 6 years ago

10.1016/j.ijpara.2017.10.006

Ancient diversity and geographical sub-structuring in African buffalo Theileria parva populations revealed through metagenetic analysis of antigen-encoding loci
Cited by: 25
Author(s): Johanneke D. Hemmink, Tatjana Sitt, Roger Pellé, Lin‐Mari de Klerk‐Lorist, Brian Shiels, Philip G. Toye, W. Ivan Morrison, William Weir
Software Mentions: 1
Published: over 6 years ago

Projects: pypi: custom

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