Ecosyste.ms: Papers

10.1371/journal.pone.0090595

Countering Countermeasures: Detecting Identity Lies by Detecting Conscious Breakthrough
Cited by: 23
Author(s): Howard Bowman, Marco Filetti, Abdulmajeed Alsufyani, Dirk P. Janssen, Li Su
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0056185

High-Resolution Mutational Profiling Suggests the Genetic Validity of Glioblastoma Patient-Derived Pre-Clinical Models
Cited by: 24
Author(s): Shawn Yost, Sandra Pastorino, Sophie Rozenzhak, Erin N. Smith, Ying S. Chao, Pengfei Jiang, Santosh Kesari, Kelly A. Frazer, Olivier Harismendy
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41398-017-0060-z

Altered avalanche dynamics in a developmental NMDAR hypofunction model of cognitive impairment
Cited by: 26
Author(s): Saurav Seshadri, Andreas Klaus, Daniel E. Winkowski, Patrick O. Kanold, Dietmar Plenz
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0117050

Novel Exons and Splice Variants in the Human Antibody Heavy Chain Identified by Single Cell and Single Molecule Sequencing
Cited by: 17
Author(s): Christopher Vollmers, Lolita Penland, Jad Kanbar, Stephen R. Quake
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41398-018-0124-8

Polygenic risk for schizophrenia and measured domains of cognition in individuals with psychosis and controls
Cited by: 44
Author(s): Rebecca Shafee, Pranav Nanda, Jaya Padmanabhan, Neeraj Tandon, Ney Alliey‐Rodriguez, Sreeja Kalapurakkel, Daniel J. Weiner, Raquel E. Gur, Richard S.E. Keefe, S. Kristian Hill, Jeffrey R. Bishop, Brett A. Clementz, Carol A. Tamminga, Elliot S. Gershon, Godfrey D. Pearlson, Matcheri S. Keshavan, John A. Sweeney, Steven A. McCarroll, Elise Robinson
Software Mentions: 1
Published: over 6 years ago

10.1016/j.celrep.2020.108529

Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch
Cited by: 18
Author(s): Laura C. Lehmann, Luka Bačić, Graeme Hewitt, Klaus Brackmann, Anton Sabantsev, Guillaume Gaullier, Sofia Pytharopoulou, Gianluca Degliesposti, Hanneke Okkenhaug, Song Tan, Alessandro Costa, J. Mark Skehel, Simon J. Boulton, Sebastian Deindl
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0171053

Genotyping-by-Sequencing in a Species Complex of Australian Hummock Grasses (Triodia): Methodological Insights and Phylogenetic Resolution
Cited by: 24
Author(s): Benjamin M. Anderson, Kevin R. Thiele, Siegfried L. Krauss, Matthew D. Barrett
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41422-018-0097-4

A dynamic N6-methyladenosine methylome regulates intrinsic and acquired resistance to tyrosine kinase inhibitors
Cited by: 136
Author(s): Fei Yan, Aref Al‐Kali, Zijie Zhang, Jun Li, Jiuxia Pang, Na Zhao, Chuan He, Mark R. Litzow, Shujun Liu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0002457

The Early ANTP Gene Repertoire: Insights from the Placozoan Genome
Cited by: 44
Author(s): Bernd Schierwater, Kai Kamm, Mansi Srivastava, Daniel S. Rokhsar, Rafael D. Rosengarten, Stephen L. Dellaporta
Software Mentions: 1
Published: over 16 years ago

10.1186/s12877-015-0080-6

Novel use of the Nintendo Wii board as a measure of reaction time: a study of reproducibility in older and younger adults
Cited by: 14
Author(s): Martin Grønbech Jørgensen, Sentha Paramanathan, Jesper Ryg, Tahir Masud, Stig Andersen
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-6-29

Global transcriptome analysis of the C57BL/6J mouse testis by SAGE: evidence for nonrandom gene order
Cited by: 31
Author(s): Petr Divina, Čestmı́r Vlček, Petr Strnad, Václav Pačes, Jiřı́ Forejt
Software Mentions: 1
Published: over 19 years ago

10.1007/s00415-020-09915-z

Different EEG brain activity in right and left handers during visually induced self-motion perception
Cited by: 10
Author(s): Michaela McAssey, James Dowsett, V. Kirsch, Thomas Brandt, Marianne Dieterich
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-016-2388-9

A benchmark study on error-correction by read-pairing and tag-clustering in amplicon-based deep sequencing
Cited by: 30
Author(s): Tian Hao Zhang, Nicholas C. Wu, Ren Sun
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0083744

Microbial Dysbiosis Is Associated with Human Breast Cancer
Cited by: 344
Author(s): Caiyun Xuan, Jaime Shamonki, Alice Chung, Maggie L. DiNome, Maureen A. Chung, Peter A. Sieling, Delphine J. Lee
Software Mentions: 1
Published: almost 11 years ago

10.3390/cells9061368

Insulin-like Growth Factor-1 and IGF Binding Proteins Predict All-Cause Mortality and Morbidity in Older Adults
Cited by: 33
Author(s): William B. Zhang, Sandra Aleksić, Ting Gao, Erica Weiss, Eleni Demetriou, Joe Verghese, Roee Holtzer, Nir Barzilai, Sofiya Milman
Software Mentions: 1
Published: over 4 years ago

10.1152/jn.00731.2015

Imaging fictive locomotor patterns in larval<i>Drosophila</i>
Cited by: 106
Author(s): Stefan R. Pulver, Timothy George Bayley, Adam L. Taylor, Jimena Berni, Michael Bate, Berthold Hedwig
Software Mentions: 1
Published: about 9 years ago

10.1152/jn.01009.2015

Fractionation of muscle activity in rapid responses to startling cues
Cited by: 27
Author(s): Lauren Dean, Stuart N. Baker
Software Mentions: 1
Published: over 7 years ago

10.1093/cercor/bhv043

Prefrontal Gamma Oscillations Encode Tonic Pain in Humans
Cited by: 173
Author(s): Enrico Schulz, May E, Martina Postorino, Laura Tiemann, Moritz M. Nickel, Viktor Witkovský, Paul Schmidt, Joachim Groß, Markus Ploner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0063048

Variation in Heterozygosity Predicts Variation in Human Substitution Rates between Populations, Individuals and Genomic Regions
Cited by: 23
Author(s): William Amos
Software Mentions: 1
Published: over 11 years ago

10.1128/AEM.02168-17

Metagenomics Reveals the Impact of Wastewater Treatment Plants on the Dispersal of Microorganisms and Genes in Aquatic Sediments
Cited by: 114
Author(s): Binh Chu, Morgan Petrovich, Adit Chaudhary, Donald J. Wright, Brian T. Murphy, George F. Wells, Rachel Poretsky
Software Mentions: 1
Published: over 6 years ago

10.1039/d0sc06516a

Nanoscale electrochemistry in a copper/aqueous/oil three-phase system: surface structure–activity-corrosion potential relationships
Cited by: 26
Author(s): Enrico Daviddi, Viacheslav Shkirskiy, Paul M. Kirkman, Mathew P. Robin, Cameron Luke Bentley, Patrick R. Unwin
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13630-018-0056-1

Assaying sensory ciliopathies using calcium biosensor expression in zebrafish ciliated olfactory neurons
Cited by: 15
Author(s): Judith G.M. Bergboer, Cameron Wyatt, Christina Austin‐Tse, Emre Yaksi, Iain A. Drummond
Software Mentions: 1
Published: over 6 years ago

10.1161/CIRCULATIONAHA.119.043450

Cardiac Energetics in Patients With Aortic Stenosis and Preserved Versus Reduced Ejection Fraction
Cited by: 17
Author(s): Mark Peterzan, William T. Clarke, Craig A. Lygate, Hannah A. Lake, Justin Y. C. Lau, Jack J. Miller, Errin Johnson, Jennifer Rayner, Moritz Hundertmark, Rana Sayeed, Mario Petrou, George Krasopoulos, Vivek Srivastava, Stefan Neubauer, Christopher T. Rodgers, Oliver J Rider
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.00431-19

Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information
Cited by: 17
Author(s): Ana Georgina Cobián Güemes, Yan Wei Lim, Robert A. Quinn, Douglas Conrad, Sean Benler, Heather Maughan, Robert A. Edwards, Thomas Brettin, Adrian Cantu, Daniel A. Cuevas, Rohaum Hamidi, Pieter C. Dorrestein, Forest Rohwer
Software Mentions: 1
Published: over 5 years ago

10.1093/cid/ciz517

Changes in the Molecular Epidemiology of Pediatric Bacterial Meningitis in Senegal After Pneumococcal Conjugate Vaccine Introduction
Cited by: 7
Author(s): Mouhamadou A. Sonko, Felix S. Dube, Catherine Okoi, Amadou Diop, Aliou Thiongane, Madikay Senghore, Peter Sylvanus Ndow, Archibal Worwui, P.M. Faye, Baidy Dieye, Idrissa Bâ, Aliou Diallo, Diop Boly, Ousmane Ndiaye, Moussa Cissé, Jason M. Mwenda, Brenda Kwambana-Adams, Martín Antonio
Software Mentions: 1
Published: about 5 years ago

10.1093/cid/ciz506

Hospital-based Surveillance Provides Insights Into the Etiology of Pediatric Bacterial Meningitis in Yaoundé, Cameroon, in the Post-Vaccine Era
Cited by: 4
Author(s): Angeline Boula, Madikay Senghore, R Ngoh, Flaubert Tassadjo, Marie‐Christine Fonkoua, Ariane Nzouankeu, Mina Kenkela Njiki, Jeanne Musi, Sandrine Rachel Kingue Bebey, Madeline Ngo Baleba, Angeline Nkembe, Sidonie Médjina, Peter Sylvanus Ndow, Archibald Worwui, Marie Kobela, Marceline Nimpa, Jason M. Mwenda, Aboubacar N’diaye, Brenda Kwambana-Adams, Martín Antonio
Software Mentions: 1
Published: about 5 years ago

10.1093/cid/ciz473

Etiology of Pediatric Bacterial Meningitis Pre- and Post-PCV13 Introduction Among Children Under 5 Years Old in Lomé, Togo
Cited by: 8
Author(s): Enyonam Tsolenyanu, Rowan E Bancroft, Abdul Karim Sesay, Madikay Senghore, Mawouto Fiawoo, D.A.E. Akolly, M Godonou, Novissi Tsogbalé, Ségla Tigossou, Leopold D. Tientcheu, Anoumou Dagnra, Y.D. Atakouma, Peter Sylvanus Ndow, Archibald Worwui, Dadja Essoya Landoh, Jason M. Mwenda, Joseph Nsiari-Muzeyi Biey, Bernard Ntsama, Brenda Kwambana-Adams, Martín Antonio
Software Mentions: 1
Published: about 5 years ago

10.3758/s13415-020-00838-w

Neural and behavioral traces of error awareness
Cited by: 13
Author(s): Hans Kirschner, Jil Humann, Jan Derrfuß, Claudia Danielmeier, Markus Ullsperger
Software Mentions: 1
Published: about 4 years ago

10.1186/s41235-020-00228-3

Emotional judgments of scenes are influenced by unintentional averaging
Cited by: 4
Author(s): Yavin Alwis, Jason Haberman
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-15-761

Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary
Cited by: 38
Author(s): J. Molnár, Tibor Nagy, Viktor Stéger, Gábor Tóth, Ferenc Marincs
Software Mentions: 1
Published: about 10 years ago

10.1038/s42003-021-01654-9

DeepLabStream enables closed-loop behavioral experiments using deep learning-based markerless, real-time posture detection
Cited by: 16
Author(s): Jens F. Schweihoff, Matvey Loshakov, И. П. Павлова, Laura Kück, Laura A. Ewell, Martin K. Schwarz
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-8-118

Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis
Cited by: 14
Author(s): Ana Carolina Fierro, Raphaël Thuret, Laurent Coen, Muriel Perron, Barbara Demeneix, Maurice Wegnez, Gábor Gyapay, Jean Weissenbach, Patrick Wincker, A Mazabraud, Nicolas Pollet
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0029792

Development of a Model System to Identify Differences in Spring and Winter Oat
Cited by: 15
Author(s): Aakash Chawade, Pernilla Lindén, Marcus Bräutigam, Rickard Jönsson, Anders Jönsson, Thomas Moritz, Olof Olsson
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0206270

Bodily sensations in social scenarios: Where in the body?
Cited by: 7
Author(s): Giovanni Novembre, Marco Zanon, India Morrison, Elisabetta Ambron
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0200517

The effects of beetroot juice supplementation on exercise economy, rating of perceived exertion and running mechanics in elite distance runners: A double-blinded, randomized study
Cited by: 17
Author(s): Carlos Balsalobre-Fernández, Blanca Romero-Moraleda, Rocío Cupeiro, Ana B. Peinado, Javier Butragueño, Pedro J. Benito
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-021-02325-5

Quantitative characterization of recombinase-based digitizer circuits enables predictable amplification of biological signals
Cited by: 6
Author(s): Katherine Kiwimagi, Justin Letendre, Benjamin H. Weinberg, Junmin Wang, Mingzhe Chen, Leandro Watanabe, Chris J. Myers, Jacob Beal, Wilson Wong, Ron Weiss
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-021-01670-9

Multimodal in vivo recording using transparent graphene microelectrodes illuminates spatiotemporal seizure dynamics at the microscale
Cited by: 21
Author(s): Nicolette Driscoll, Richard Rosch, Brendan B. Murphy, Arian Ashourvan, Ramya Vishnubhotla, Olivia O. Dickens, A. T. Charlie Johnson, Kathryn A. Davis, Brian Litt, Danielle S. Bassett, Hajime Takano, Flavia Vitale
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0014202

De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology
Cited by: 135
Author(s): Jacob E. Crawford, Wamdaogo M. Guelbeogo, Antoine Sanou, Alphonse Traoré, Kenneth D. Vernick, N’Falé Sagnon, Brian P. Lazzaro
Software Mentions: 1
Published: almost 14 years ago

10.1128/AAC.00605-18

Fitness Costs and the Rapid Spread of <i>kelch13</i> -C580Y Substitutions Conferring Artemisinin Resistance
Cited by: 56
Author(s): Shalini Nair, Xue Li, Grace A Arya, Marina McDew-White, Marco Ferrari, François Nosten, Tim Anderson
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0146062

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome
Cited by: 92
Author(s): Loren Honaas, Eric Wafula, Norman J. Wickett, Joshua P. Der, Yeting Zhang, Patrick P. Edger, Naomi Altman, J. Chris Pires, James H. Leebens‐Mack, Claude W. dePamphilis
Software Mentions: 1
Published: almost 9 years ago

10.1038/s42003-018-0263-8

Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction
Cited by: 46
Author(s): Marcus Gallagher-Jones, Colin Ophus, Karen C. Bustillo, David R. Boyer, Ouliana Panova, Calina Glynn, Chih-Te Zee, Jim Ciston, Kevin Canton Mancia, Andrew M. Minor, José A. Rodríguez
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0025084

Biochemical, Structural and Molecular Dynamics Analyses of the Potential Virulence Factor RipA from Yersinia pestis
Cited by: 15
Author(s): Rodrigo Torres, Robert V. Swift, Nicholas Chim, Nicole M. Wheatley, Benson Lan, Brian R. Atwood, Céline Pujol, B. Sankaran, James B. Bliska, Rommie E. Amaro, Celia W. Goulding
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0061702

Influence of Retinal Image Shifts and Extra-Retinal Eye Movement Signals on Binocular Rivalry Alternations
Cited by: 8
Author(s): Joke P. Kalisvaart, Jeroen Goossens
Software Mentions: 1
Published: over 11 years ago

10.1038/s42003-021-02348-y

Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida)
Cited by: 18
Author(s): Gustavo Sánchez, Fernando Ángel Fernández-Álvarez, Morag Taite, Chikatoshi Sugimoto, Jeffrey Jolly, Oleg Simakov, Ferdinand Marlétaz, A. Louise Allcock, Daniel S. Rokhsar
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-021-02488-1

In situ imaging reveals disparity between prostaglandin localization and abundance of prostaglandin synthases
Cited by: 8
Author(s): Kyle D. Duncan, Xiaofei Sun, Erin Baker, Sudhansu K. Dey, Ingela Lanekoff
Software Mentions: 1
Published: over 3 years ago

10.2135/cropsci2017.07.0442

Impact of Mislabeling on Genomic Selection in Cassava Breeding
Cited by: 11
Author(s): Shiori Yabe, Hiroyoshi Iwata, Jean‐Luc Jannink
Software Mentions: 1
Published: over 6 years ago

10.7759/cureus.11334

Composition and Laboratory Correlation of Commercial Probiotics in India
Cited by: 11
Author(s): Dhanasekhar Kesavelu, Anusha Rohit, Iddya Karunasagar
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0202505

Role of the circadian clock in the statistics of locomotor activity in Drosophila
Cited by: 7
Author(s): Guadalupe Cascallares, Sabrina Riva, Diana Franco, Sebastián Risau-Gusman, Pablo M. Gleiser
Software Mentions: 1
Published: about 6 years ago

10.1016/j.cub.2021.01.026

Real-time dialogue between experimenters and dreamers during REM sleep
Cited by: 40
Author(s): Karen Konkoly, Kristoffer Appel, Emma Chabani, Anastasia Mangiaruga, Jarrod Gott, Remington Mallett, Bruce Caughran, Sarah Witkowski, Nathan W. Whitmore, Christopher Y. Mazurek, Jonathan Berent, Frederik D. Weber, Başak Türker, Smaranda Leu‐Semenescu, Jean Baptiste Maranci, Gordon Pipa, Isabelle Arnulf, Delphine Oudiette, Martin Dresler, Ken A. Paller
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0020561

Integration of Expressed Sequence Tag Data Flanking Predicted RNA Secondary Structures Facilitates Novel Non-Coding RNA Discovery
Cited by: 7
Author(s): Paul M. Krzyzanowski, Feodor D. Price, Enrique M. Muro, Michael A. Rudnicki, Miguel A. Andrade‐Navarro
Software Mentions: 1
Published: over 13 years ago

10.1016/j.cub.2011.09.025

A Head View-Invariant Representation of Gaze Direction in Anterior Superior Temporal Sulcus
Cited by: 105
Author(s): Johan D. Carlin, Andrew J. Calder, Nikolaus Kriegeskorte, Hamed Nili, James B. Rowe
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0213992

A novel transcriptome-derived SNPs array for tench (Tinca tinca L.)
Cited by: 3
Author(s): Girish Kumar, Jorge Langa, Iratxe Montes, Darrell Conklin, Martin Kocour, Klaus Kohlmann, Andone Estonba
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.03050-19

Robustness in an Ultrasensitive Motor
Cited by: 6
Author(s): Guangzhe Liu, Antai Tao, Rongjing Zhang, Junhua Yuan
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0148334

Crimson Spotted Rainbowfish (Melanotaenia duboulayi) Change Their Spatial Position according to Nutritional Requirement
Cited by: 19
Author(s): Matthew J. Hansen, Timothy M. Schaerf, Jens Krause, Ashley J. W. Ward
Software Mentions: 1
Published: almost 9 years ago

10.1093/database/bat083

tbvar: a comprehensive genome variation resource for Mycobacterium tuberculosis
Cited by: 18
Author(s): Kandarp Joshi, Heena Dhiman, Vinod Scaria
Software Mentions: 1
Published: almost 11 years ago

10.1523/JNEUROSCI.2878-16.2017

Enlargement of Ribbons in Zebrafish Hair Cells Increases Calcium Currents But Disrupts Afferent Spontaneous Activity and Timing of Stimulus Onset
Cited by: 48
Author(s): Lavinia Sheets, Xinyi Jenny He, Jennifer Olt, Mary Schreck, Ronald S. Petralia, Ya Xian Wang, Qiu Xiang Zhang, Alisha Beirl, Teresa Nicolson, Walter Marcotti, Josef G. Trapani, Katie S. Kindt
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0125722

RNA-Seq Based De Novo Transcriptome Assembly and Gene Discovery of Cistanche deserticola Fleshy Stem
Cited by: 14
Author(s): Yuli Li, Xiliang Wang, Tingting Chen, Feng Yao, Cuiping Li, Qingli Tang, Min Sun, Gaoyuan Sun, Songnian Hu, Jun Yu, Shuhui Song
Software Mentions: 1
Published: over 9 years ago

10.1016/j.devcel.2018.10.025

Adherens Junction Length during Tissue Contraction Is Controlled by the Mechanosensitive Activity of Actomyosin and Junctional Recycling
Cited by: 46
Author(s): Angughali Sumi, Peran Hayes, Arturo D’Angelo, Julien Colombelli, Guillaume Salbreux, Kai Dierkes, Jérôme Solon
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0140191

What’s in the Gift? Towards a Molecular Dissection of Nuptial Feeding in a Cricket
Cited by: 9
Author(s): Yannick Pauchet, Natalie Wielsch, Paul Wilkinson, Scott K. Sakaluk, Aleš Svatoš, Richard H. ffrench-Constant, John Hunt, David G. Heckel
Software Mentions: 1
Published: about 9 years ago

10.3390/diagnostics10050315

The Over-Expression of E2F3 Might Serve as Prognostic Marker for Neuroblastoma Patients with Stage 4S Disease
Cited by: 6
Author(s): Stefano Parodi, Marzia Ognibene, Riccardo Haupt, Annalisa Pezzolo
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0092915

ATRX Dysfunction Induces Replication Defects in Primary Mouse Cells
Cited by: 87
Author(s): David Clynes, Clare Jelinska, Barbara Xella, Helena Ayyub, Stephen Taylor, Matthew Mitson, Csanád Z. Bachrati, Douglas R. Higgs, Richard J. Gibbons
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0232916

An automated homecage system for multiwhisker detection and discrimination learning in mice
Cited by: 8
Author(s): Sarah Bernhard, Jiseok Lee, Mo Zhu, Alex Hsu, Andrew Erskine, Samuel Andrew Hires, Alison L. Barth
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.ebiom.2018.10.013

The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology
Cited by: 94
Author(s): Conor J. Meehan, Pieter Moris, Thomas A. Kohl, Jūlija Pečerska, Suriya Akter, Matthias Merker, Christian Utpatel, Patrick Beckert, Florian Gehre, Pauline Lempens, Tanja Stadler, Michel Kaswa, Denise Kühnert, Stefan Niemann, Bouke C. de Jong
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0254454

Video and acceleration records of streaked shearwaters allows detection of two foraging behaviours associated with large marine predators
Cited by: 2
Author(s): Aran Garrod, Sei Yamamoto, Kentaro Q. Sakamoto, Katsufumi Sato
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0191081

Genome-wide identification, characterization and expression profile analysis of expansins gene family in sugarcane (Saccharum spp.)
Cited by: 23
Author(s): Thaís Ribeiro Santiago, Valquíria Martins Pereira, Wagner Rodrigo de Souza, Andrei Stecca Steindorff, Bárbara Andrade Dias Brito da Cunha, Marı́lia Gaspar, Léia C. L. Fávaro, Eduardo Fernandes Formighieri, Adilson Kenji Kobayashi, H. B. C. Molinari
Software Mentions: 1
Published: almost 7 years ago

10.15252/emmm.201707723

A normal genetic variation modulates synaptic <scp>MMP</scp>‐9 protein levels and the severity of schizophrenia symptoms
Cited by: 27
Author(s): Katarzyna Łepeta, Katarzyna J. Purzycka, Katarzyna Pachulska-Wieczorek, Marina Mitjans, Martin Begemann, Behnam Vafadari, Krystian Bijata, Ryszard W. Adamiak, Hannelore Ehrenreich, Magdalena Dziembowska, Leszek Kaczmarek
Software Mentions: 1
Published: over 7 years ago

10.15252/embr.202051851

Parp1 hyperactivity couples DNA breaks to aberrant neuronal calcium signalling and lethal seizures
Cited by: 27
Author(s): Emilia Komulainen, Jack Badman, Stéphanie Rey, Stuart L. Rulten, Limei Ju, Kate Fennell, Ilona Kalasová, Kristýna Ilievová, Peter J. McKinnon, Hana Hanzlíková, Kevin Staras, Keith W. Caldecott
Software Mentions: 1
Published: over 3 years ago

10.15252/embr.201540509

Transcriptional slippage in the positive‐sense <scp>RNA</scp> virus family <i>Potyviridae</i>
Cited by: 170
Author(s): Allan Olspert, Betty Y.-W. Chung, John F. Atkins, John P. Carr, Andrew E. Firth
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0214274

Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns
Cited by: 11
Author(s): Susan B. Fogelson, Alvin C. Camus, W. Walter Lorenz, Ravikiran Vasireddy, Sruthi Vasireddy, Terry J. Smith, Barbara A. Brown‐Elliott, Richard J. Wallace, Hasan Na, Udo Reischl, Susan Sánchez
Software Mentions: 1
Published: over 5 years ago

10.1002/eap.2245

Continental‐scale dynamics of avian influenza in U.S. waterfowl are driven by demography, migration, and temperature
Cited by: 8
Author(s): Erin E. Gorsich, Colleen T. Webb, Andrew A. Merton, Jennifer A. Hoeting, Ryan S. Miller, Matthew L. Farnsworth, Seth R. Swafford, Thomas J. DeLiberto, Kerri Pedersen, Alan B. Franklin, Robert G. McLean, Kenneth Wilson, Paul F. Doherty
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0224666

Seasonal oyster harvesting recorded in a Late Archaic period shell ring
Cited by: 14
Author(s): Nicole R. Cannarozzi, Michał Kowalewski
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0118193

High-Resolution Sequence-Function Mapping of Full-Length Proteins
Cited by: 56
Author(s): Caitlin A. Kowalsky, Justin R. Klesmith, James A. Stapleton, Vince W. Kelly, Nolan Reichkitzer, Timothy A. Whitehead
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0214226

Effects of hazard types on drivers’ risk rating and hazard response in a video-based hazard perception task
Cited by: 7
Author(s): Long Sun, Lingsen Hua
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0020883

Sustained Fixation Induced Changes in Phoria and Convergence Peak Velocity
Cited by: 30
Author(s): Eun H. Kim, Vincent R. Vicci, Sang Jin Han, Tara L. Alvarez
Software Mentions: 1
Published: over 13 years ago

10.1002/ece3.3821

Exploring the phylogeography of a hexaploid freshwater fish by <scp>RAD</scp> sequencing
Cited by: 16
Author(s): Connor Seamus Stobie, Carel J. Oosthuizen, Michael J. Cunningham, Paulette Bloomer
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-12-558

The MetJ regulon in gammaproteobacteria determined by comparative genomics methods
Cited by: 19
Author(s): Anne Marie Augustus, Leonard D. Spicer
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0108184

Initiation of Bladder Voiding with Epidural Stimulation in Paralyzed, Step Trained Rats
Cited by: 50
Author(s): Parag Gad, Roland R. Roy, Hui Zhong, Daniel C. Lu, Yury Gerasimenko, V. Reggie Edgerton
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0063938

Genome-Wide Analysis Reveals Diversity of Rice Intronic miRNAs in Sequence Structure, Biogenesis and Function
Cited by: 11
Author(s): Yongao Tong, Peng Hua, Cheng Zhan, Linhong Fan, Ting Ai, Shenghua Wang
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-14-847

Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters
Cited by: 56
Author(s): Christopher Sibthorp, Huihai Wu, Gwendolyn Cowley, Prudence W. H. Wong, Paulius Palaima, Igor Y. Morozov, Gareth D. Weedall, Mark X. Caddick
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0027650

Chemotaxis in Densely Populated Tissue Determines Germinal Center Anatomy and Cell Motility: A New Paradigm for the Development of Complex Tissues
Cited by: 5
Author(s): Joseph E. Hawkins, Mark T. Jones, Paul E. Plassmann, David A. Thorley‐Lawson
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0234397

Social comparison impacts stimulus evaluation in a competitive social learning task
Cited by: 1
Author(s): Rebecca Burnside, Markus Ullsperger
Software Mentions: 1
Published: over 4 years ago

10.1002/ece3.7060

Tracing species replacement in Iberian marbled newts
Cited by: 5
Author(s): Julia López‐Delgado, Isolde van Riemsdijk, Jan W. Arntzen
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0052468

Phylogeography and Sex-Biased Dispersal across Riverine Manatee Populations (Trichechus inunguis and Trichechus manatus) in South America
Cited by: 19
Author(s): Paula Satizábal, Antonio A. Mignucci‐Giannoni, Sebastián Duchêne, Dalila Caicedo‐Herrera, Carlos M. Perea-Sicchar, Carmen Rosa García-Dávila, Fernando Trujillo, Susana Caballero
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0134091

Secondary Structure of Rat and Human Amylin across Force Fields
Cited by: 43
Author(s): Kyle Q. Hoffmann, Michael McGovern, Chi Cheng Chiu, Juan J. de Pablo
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-018-4603-3

Integrative analysis reveals ncRNA-mediated molecular regulatory network driving secondary hair follicle regression in cashmere goats
Cited by: 35
Author(s): Guangxian Zhou, Dan-Ju Kang, Sen Ma, Xiaolong Wang, Ye Gao, Yuxin Yang, Yulin Chen
Software Mentions: 1
Published: over 6 years ago

10.1080/22221751.2019.1587315

Genomic epidemiology of erythromycin-resistant <i>Bordetella pertussis</i> in China
Cited by: 39
Author(s): Zheng Xu, Zengguo Wang, Yang Luan, Yarong Li, Xiaoguai Liu, Xiaokang Peng, Sophie Octavia, Michael Payne, Ruiting Lan
Software Mentions: 1
Published: almost 6 years ago

10.1210/en.2017-00107

Heterogeneity of Calcium Responses to Secretagogues in Corticotrophs From Male Rats
Cited by: 15
Author(s): Nicola Romanò, Heather McClafferty, Jamie J. Walker, Paul Le Tissier, Michael J. Shipston
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0033034

Deep Annotation of Populus trichocarpa microRNAs from Diverse Tissue Sets
Cited by: 60
Author(s): Joshua R. Puzey, Amir Karger, Michael J. Axtell, Elena M. Kramer
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0234255

Brain regions vulnerable and resistant to aging without Alzheimer’s disease
Cited by: 24
Author(s): Xinyang Feng, Jia Guo, Hannah C. Sigmon, Richard P. Sloan, Adam M. Brickman, Frank A. Provenzano, Scott A. Small
Software Mentions: 1
Published: over 4 years ago

10.1186/1756-8935-6-8

Vertebrate GAGA factor associated insulator elements demarcate homeotic genes in the HOX clusters
Cited by: 23
Author(s): Surabhi Srivastava, Deepika Puri, Hita Sony Garapati, Jyotsna Dhawan, Rakesh K. Mishra
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0202720

High-throughput characterisation of bull semen motility using differential dynamic microscopy
Cited by: 11
Author(s): Alys Jepson, Jochen Arlt, Jonathan Statham, Mark Spilman, Katie Burton, Tiffany Wood, Wilson Poon, Vincent A. Martinez
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0154426

Nanopore-Based Target Sequence Detection
Cited by: 44
Author(s): Trevor J. Morin, Tyler D. Shropshire, Xu Liu, Kyle Briggs, Cindy Huynh, Vincent Tabard‐Cossa, Hongyun Wang, William B. Dunbar
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0056543

Evidence That Primary Visual Cortex Is Required for Image, Orientation, and Motion Discrimination by Rats
Cited by: 43
Author(s): Sarah K. Petruno, Robert E. Clark, Pamela Reinagel
Software Mentions: 1
Published: almost 12 years ago

10.1007/s00406-020-01172-5

Changes in functional connectivity after theta-burst transcranial magnetic stimulation for post-traumatic stress disorder: a machine-learning study
Cited by: 9
Author(s): Amin Zandvakili, Hannah Swearingen, Noah S. Philip
Software Mentions: 1
Published: over 4 years ago

10.1111/j.1460-9568.2008.06021.x

Reaching activity in parietal area V6A of macaque: eye influence on arm activity or retinocentric coding of reaching movements?
Cited by: 94
Author(s): Nicoletta Marzocchi, Rossella Breveglieri, Claudio Galletti, Patrizia Fattori
Software Mentions: 1
Published: almost 17 years ago

10.1186/s11556-019-0233-2

A usability study of a multicomponent video game-based training for older adults
Cited by: 45
Author(s): Manuela Adcock, Floriana Sonder, Alexandra Schättin, Federico Gennaro, Eling D. de Bruin
Software Mentions: 1
Published: almost 5 years ago

10.1128/mSphere.00289-16

Comparative Genome Analysis of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Sequence Type 131 Strains from Nepal and Japan
Cited by: 7
Author(s): Tohru Miyoshi‐Akiyama, Jatan Bahadur Sherchan, Yohei Doi, Maki Nagamatsu, Jeevan Bahadur Sherchand, Sarmila Tandukar, Norio Ohmagari, Teruo Kirikae, Hiroshi Ohara, Kayoko Hayakawa
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0055519

Origins and Evolution of the Etruscans’ mtDNA
Cited by: 40
Author(s): Silvia Ghirotto, Francesca Tassi, Erica Fumagalli, Vincenza Colonna, Anna Sandionigi, Martina Lari, Stefania Vai, Emmanuele Petiti, Giorgio Corti, Ermanno Rizzi, Gianluca De Bellis, David Caramelli, Guido Barbujani
Software Mentions: 1
Published: almost 12 years ago

10.1111/eva.12741

Seascape genomics of eastern oyster (<i>Crassostrea virginica</i>) along the Atlantic coast of Canada
Cited by: 43
Author(s): Simon Bernatchez, Amanda Xuereb, Martin Laporte, Laura Benestan, Royce Steeves, Mark Laflamme, Louis Bernatchez, Martin A. Mallet
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0218444

Nilotinib interferes with cell cycle, ABC transporters and JAK-STAT signaling pathway in CD34+/lin- cells of patients with chronic phase chronic myeloid leukemia after 12 months of treatment
Cited by: 8
Author(s): Alessandra Trojani, Ester Pungolino, Alessandra Dal Molin, Milena Lodola, Giuseppe Rossi, Mariella D’Adda, Alessandra Perego, Chiara Elena, Mauro Turrini, Lorenza Borin, Cristina Bucelli, Simona Malato, Maria Cristina Carraro, Francesco Spina, Maria Luisa Latargia, Salvatore Artale, Pierangelo Spedini, Michela Anghilieri, Barbara Di Camillo, Giacomo Baruzzo, Gabriella De Canal, Alessandra Iurlo, Enrica Morra, Roberto Cairoli
Software Mentions: 1
Published: over 5 years ago