Ecosyste.ms: Papers

10.1371/journal.pbio.2005982

Partial homologies between sleep states in lizards, mammals, and birds suggest a complex evolution of sleep states in amniotes
Cited by: 49
Author(s): Paul-Antoine Libourel, Baptiste Barrillot, Sébastien Arthaud, Bertrand Massot, Anne-Laure Morel, Olivier Beuf, Anthony Herrel, Pierre‐Hervé Luppi
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pbio.3000387

Strategic deployment of feature-based attentional gain in primate visual cortex
Cited by: 14
Author(s): Vladislav Kozyrev, Mohammad Reza Daliri, Philipp Schwedhelm, Stefan Treue
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.1001811

Motivational Salience Signal in the Basal Forebrain Is Coupled with Faster and More Precise Decision Speed
Cited by: 36
Author(s): Irene Avila, Shih‐Chieh Lin
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.120.401239

A Nested Association Mapping Panel in <i>Arabidopsis thaliana</i> for Mapping and Characterizing Genetic Architecture
Cited by: 5
Author(s): Marcus T. Brock, Matthew J. Rubin, Dean DellaPenna, Cynthia Weinig
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pbio.1002475

Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression
Cited by: 65
Author(s): Adam J. Book, Gina R. Lewin, Bradon R. McDonald, Taichi E. Takasuka, Evelyn Wendt-Pienkowski, Drew T. Doering, Steven Suh, Kenneth F. Raffa, Brian G. Fox, Cameron R. Currie
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.60299

Central processing of leg proprioception in Drosophila
Cited by: 31
Author(s): Sweta Agrawal, Evyn S Dickinson, Anne Sustar, Pralaksha Gurung, David Shepherd, James W. Truman, John C. Tuthill
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.42870

Neural dynamics at successive stages of the ventral visual stream are consistent with hierarchical error signals
Cited by: 46
Author(s): Elias B. Issa, Charles F. Cadieu, James J. DiCarlo
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.1001937

In Vitro Generation of Neuromesodermal Progenitors Reveals Distinct Roles for Wnt Signalling in the Specification of Spinal Cord and Paraxial Mesoderm Identity
Cited by: 300
Author(s): Mina Gouti, Anestis Tsakiridis, Filip J. Wymeersch, Yali Huang, Jens Kleinjung, Valerie Wilson, James Briscoe
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pbio.1002582

A Low-Correlation Resting State of the Striatum during Cortical Avalanches and Its Role in Movement Suppression
Cited by: 20
Author(s): Andreas Klaus, Dietmar Plenz
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes11030283

Genetic Diversity, Population Structure and Linkage Disequilibrium Assessment among International Sunflower Breeding Collections
Cited by: 16
Author(s): Carla Valeria Filippi, Gabriela Alejandra Merino, Juan Francisco Montecchia, Natalia Cristina Aguirre, Máximo Rivarola, Guy Naamati, Mónica Fass, Daniel León Álvarez, Julio A. Di Rienzo, Ruth Amelia Heinz, Bruno Contreras‐Moreira, Verónica Viviana Lia, Norma Paniego
Software Mentions: 1
Published: over 4 years ago

10.14814/phy2.12360

Impact of body tilt on the central aortic pressure pulse
Cited by: 6
Author(s): Corina Rotaru, Lucas Liaudet, Bernard Waeber, François Feihl
Software Mentions: 1
Published: over 9 years ago

10.1039/d1cp01058a

Unravelling the structures of sodiated β-cyclodextrin and its fragments
Cited by: 13
Author(s): Jordan M. Rabus, Robert P. Pellegrinelli, Ali Hassan Abi Khodr, Benjamin J. Bythell, Thomas R. Rizzo, Eduardo Carrascosa
Software Mentions: 1
Published: almost 4 years ago

10.1590/1678-4685-GMB-2018-0019

Analysis of tRNA halves (tsRNAs) in serum from cattle challenged with bovine viral diarrhea virus
Cited by: 8
Author(s): Tasia M. Taxis, Fernando V. Bauermann, Julia F. Ridpath, Eduardo Casas
Software Mentions: 1
Published: over 5 years ago

10.1186/s12711-018-0397-7

Using genomic relationship likelihood for parentage assignment
Cited by: 19
Author(s): Kim Erik Grashei, Jørgen Ødegård, T.H.E. Meuwissen
Software Mentions: 1
Published: over 6 years ago

10.1186/s12711-019-0465-7

Genomic measures of inbreeding in the Norwegian–Swedish Coldblooded Trotter and their associations with known QTL for reproduction and health traits
Cited by: 11
Author(s): Brandon D. Velie, Marina Solé, Kim Jäderkvist Fegraeus, Maria Rosengren, Knut Røed, C. F. Ihler, Eric Strand, Gabriella Lindgren
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jsb.2016.06.024

Cellular electron cryo tomography and in situ sub-volume averaging reveal the context of microtubule-based processes
Cited by: 37
Author(s): Michael Grange, Daven Vasishtan, Kay Grünewald
Software Mentions: 1
Published: almost 8 years ago

10.3390/pharmaceutics13040524

Membrane Environment Modulates Ligand-Binding Propensity of P2Y12 Receptor
Cited by: 3
Author(s): Fatemeh Haghighi, Semen O. Yesylevskyy, Siamak Davani, Christophe Ramseyer
Software Mentions: 1
Published: over 3 years ago

10.1128/genomeA.00438-14

Genome Sequences of Nine Bordetella holmesii Strains Isolated in the United States
Cited by: 21
Author(s): Eric T. Harvill, Laura L. Goodfield, Yu. V. Ivanov, William E. Smallridge, Jessica A. Meyer, Pamela K. Cassiday, M. Lucia Tondella, Lauren Brinkac, Ravi Sanka, Maria Kim, Liliana Losada
Software Mentions: 1
Published: over 10 years ago

10.1128/genomeA.00859-14

Complete Genome Sequences of IncI1 Plasmids Carrying Extended-Spectrum β-Lactamase Genes
Cited by: 18
Author(s): Michael S. M. Brouwer, Alex Bossers, Frank Harders, Alieda van Essen-Zandbergen, Dik Mevius, Hilde E. Smith
Software Mentions: 1
Published: about 10 years ago

10.1128/genomeA.00241-15

Draft Genome Sequence of Pseudomonas sp. nov. H2
Cited by: 1
Author(s): Wesley Loftie-Eaton, Haruo Suzuki, Kelsie Bashford, Holger Heuer, Pieter Stragier, Paul De Vos, Matthew L. Settles, Eva M. Top
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.00081-15

Draft Genome Sequences of Six Bordetella hinzii Isolates Acquired from Avian and Mammalian Hosts
Cited by: 9
Author(s): Karen B. Register, Yu. V. Ivanov, Eric T. Harvill, Lauren Brinkac, Maria Kim, Liliana Losada
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.00152-15

Draft Genome Sequences of 53 Genetically Distinct Isolates of Bordetella bronchiseptica Representing 11 Terrestrial and Aquatic Hosts
Cited by: 7
Author(s): Karen B. Register, Yu. V. Ivanov, Nathan T. Jacobs, Jessica A. Meyer, Laura L. Goodfield, Sarah J. Muse, William E. Smallridge, Lauren Brinkac, Maria Kim, Ravi Sanka, Eric T. Harvill, Liliana Losada
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-017-3903-3

Comparative genomics shows that viral integrations are abundant and express piRNAs in the arboviral vectors Aedes aegypti and Aedes albopictus
Cited by: 132
Author(s): Umberto Palatini, Pascal Miesen, Rebeca Carballar-Lejarazú, Lino Ometto, Ettore Rizzo, Zhijian Tu, Ronald P. van Rij, Mariangela Bonizzoni
Software Mentions: 1
Published: over 7 years ago

10.1186/gb-2007-8-6-r113

LongSAGE profiling of nine human embryonic stem cell lines
Cited by: 23
Author(s): Martin Hirst, Allen Delaney, Sean Angus Rogers, Angelique Schnerch, Deryck R. Persaud, Michael D. O’Connor, Thomas Zeng, Michelle Moksa, Keith Fichter, Diana Mah, Anne Go, Ryan D. Morin, Ágnes Baross, Yongjun Zhao, Jaswinder Khattra, Anna‐Liisa Prabhu, Pawan Pandoh, Helen McDonald, Jennifer Asano, Noreen Dhalla, Kevin Sheng‐Kai, Stephanie J. Lee, Adrian Ally, Neil Chahal, Stephanie Menzies, Asim Siddiqui, Robert A. Holt, Steven J.M. Jones, Daniela S. Gerhard, James A. Thomson, Connie J. Eaves, Marco A. Marra
Software Mentions: 1
Published: almost 18 years ago

10.7717/peerj.8265

Toward insights on determining factors for high activity in antimicrobial peptides via machine learning
Cited by: 7
Author(s): Hao Li, Chanin Nantasenamat
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-10-50

Generation of a predicted protein database from EST data and application to iTRAQ analyses in grape (Vitis vinifera cv. Cabernet Sauvignon) berries at ripening initiation
Cited by: 50
Author(s): Joost Lücker, Mario Laszczak, Derek Smith, Steven T. Lund
Software Mentions: 1
Published: almost 16 years ago

10.1111/jth.12836

Use of next‐generation sequencing and candidate gene analysis to identify underlying defects in patients with inherited platelet function disorders
Cited by: 61
Author(s): Vincenzo C. Leo, Neil V. Morgan, Danai Bem, Matthew L. Jones, Gillian Lowe, Marie Lordkipanidzé, Sian Drake, Michael A. Simpson, Paul Gissen, Andrew D Mumford, Steve P. Watson, Mary E. Daly
Software Mentions: 1
Published: over 9 years ago

10.1186/gb-2012-13-2-r15

Characterizing linkage disequilibrium and evaluating imputation power of human genomic insertion-deletion polymorphisms
Cited by: 30
Author(s): James T. Lu, Yi Wang, Richard A. Gibbs, Fuli Yu
Software Mentions: 1
Published: almost 13 years ago

10.7717/peerj.476

Data-mining of potential antitubercular activities from molecular ingredients of traditional Chinese medicines
Cited by: 4
Author(s): Salma Jamal, Vinod Scaria
Software Mentions: 1
Published: over 10 years ago

10.1186/gb-2013-14-2-r13

Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
Cited by: 86
Author(s): Mallory Freeberg, Ting Han, James J. Moresco, Andy T. Kong, Yu Yang, Zhi John Lu, John R. Yates, John K. Kim
Software Mentions: 1
Published: almost 12 years ago

10.7717/peerj.5308

Combined accelerometer and genetic analysis to differentiate essential tremor from Parkinson’s disease
Cited by: 8
Author(s): Bhuvan Molparia, Brian Schrader, Eli B. Cohen, Jennifer Wagner, Sandeep R Gupta, Sherrie Gould, Nelson Hwynn, Emily Spencer, Ali Torkamani
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-569

Evaluating bias-reducing protocols for RNA sequencing library preparation
Cited by: 29
Author(s): Thomas J. Jackson, Ruth V. Spriggs, Nicholas J. Burgoyne, Carolyn Jones, Anne E. Willis
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.30373

Orbitofrontal neurons signal sensory associations underlying model-based inference in a sensory preconditioning task
Cited by: 67
Author(s): Brian F Sadacca, Heather M. Wied, Н. Г. Лопатина, Gurpreet K Saini, Daniel Nemirovsky, Geoffrey Schoenbaum
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.33854

Principal cells of the brainstem’s interaural sound level detector are temporal differentiators rather than integrators
Cited by: 44
Author(s): Tom P. Franken, Philip X. Joris, Philip H. Smith
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-014-0478-z

Whole genome sequencing of SIV-infected macaques identifies candidate loci that may contribute to host control of virus replication
Cited by: 29
Author(s): Adam J. Ericsen, Gabriel J. Starrett, Justin M. Greene, Michael Lauck, Muthuswamy Raveendran, David Rio Deiros, Mariel S. Mohns, Nicolas Vince, Brian T Cain, Ngoc H Pham, Jason T. Weinfurter, Adam L. Bailey, Melisa L. Budde, Roger W. Wiseman, Richard A. Gibbs, Donna M. Muzny, Thomas C. Friedrich, Jeffrey Rogers, David H. O’Connor
Software Mentions: 1
Published: about 10 years ago

10.7717/peerj.11521

Reliability of hip muscle strength measured in principal and intermediate planes of movement
Cited by: 5
Author(s): Basílio A.M. Gonçalves, David J. Saxby, Adam Kositsky, Rod Barrett, Laura E. Diamond
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.7500

<i>Rhopalocnemis phalloides</i> has one of the most reduced and mutated plastid genomes known
Cited by: 19
Author(s): Mikhail I. Schelkunov, Maxim S. Nuraliev, Maria D. Logacheva
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.3595

Using electroretinograms and multi-model inference to identify spectral classes of photoreceptors and relative opsin expression levels
Cited by: 3
Author(s): Nicolas Lessios
Software Mentions: 1
Published: over 7 years ago

10.1186/s13059-015-0586-4

Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
Cited by: 534
Author(s): Moran N. Cabili, Margaret C. Dunagin, Patrick D. McClanahan, Andrew G. Biaesch, Olivia Padovan-Merhar, Aviv Regev, John L. Rinn, Arjun Raj
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.13253

A circuit mechanism for the propagation of waves of muscle contraction in Drosophila
Cited by: 138
Author(s): Akira Fushiki, Maarten Zwart, Hiroshi Kohsaka, Richard D. Fetter, Albert Cardona, Akinao Nose
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.5401

Genome analysis of the ubiquitous boxwood pathogen<i>Pseudonectria foliicola</i>
Cited by: 17
Author(s): Yazmín Rivera, Catalina Salgado‐Salazar, Daniel Veltri, Martha Malapi‐Wight, Jo Anne Crouch
Software Mentions: 1
Published: about 6 years ago

10.1186/s13059-017-1204-4

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance
Cited by: 112
Author(s): Gustavo C. Cerqueira, Ian H. Cheeseman, Steve F. Schaffner, Shalini Nair, Marina McDew-White, Aung Pyae Phyo, Elizabeth A. Ashley, Alexandre Melnikov, Peter Rogov, Bruce W. Birren, François Nosten, Timothy J. Anderson, Daniel E. Neafsey
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-14-820

Soil bacterial communities shaped by geochemical factors and land use in a less-explored area, Tibetan Plateau
Cited by: 44
Author(s): Xiangyu Guan, Jinfeng Wang, Hui Zhao, Jianjun Wang, Ximing Luo, Fei Liu, Fangqing Zhao
Software Mentions: 1
Published: almost 11 years ago

10.7717/peerj.1106

From promise to practice: pairing non-invasive sampling with genomics in conservation
Cited by: 131
Author(s): Michael A. Russello, Matthew D. Waterhouse, Paul D. Etter, Eric A. Johnson
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.9

The effects of fixation target size and luminance on microsaccades and square-wave jerks
Cited by: 61
Author(s): Michael B. McCamy, Ali Najafian Jazi, Jorge Otero‐Millan, Stephen L. Macknik, Susana Martínez-Conde
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13071-016-1302-2

Ectoparasites may serve as vectors for the white-nose syndrome fungus
Cited by: 25
Author(s): Radek Lučan, Hana Banďouchová, Tomáš Bartonička, Jiří Pikula, Alexandra Zahradníková, Jan Zukal, Natália Martínková
Software Mentions: 1
Published: almost 9 years ago

10.1051/parasite/2020043

Molecular identification of trypanosomes in cattle in Malawi using PCR methods and nanopore sequencing: epidemiological implications for the control of human and animal trypanosomiases
Cited by: 4
Author(s): Megasari Marsela, Kyoko Hayashida, Ryo Nakao, Elisha Chatanga, Alex Kiarie Gaithuma, Nobuyoshi Kawai, Janelisa Musaya, Chihiro Sugimoto, Junya Yamagishi
Software Mentions: 1
Published: almost 5 years ago

10.1093/gbe/evu131

Extensive Local Gene Duplication and Functional Divergence among Paralogs in Atlantic Salmon
Cited by: 35
Author(s): Ian A. Warren, Kate L. Ciborowski, Elisa Casadei, David G. Hazlerigg, Samuel Martín, William Chester Jordan, Seirian Sumner
Software Mentions: 1
Published: over 10 years ago

10.1186/1750-1172-7-67

Missense mutations in ITPR1 cause autosomal dominant congenital nonprogressive spinocerebellar ataxia
Cited by: 116
Author(s): Lijia Huang, Jodi Warman‐Chardon, Melissa T. Carter, K. Friend, Tracy Dudding, Jeremy Schwartzentruber, Ruobing Zou, Peter R. Schofield, Stuart Douglas, Dennis E. Bulman, Kym M. Boycott
Software Mentions: 1
Published: about 12 years ago

10.1093/gbe/evv145

The Genome of Winter Moth (<i>Operophtera brumata</i>) Provides a Genomic Perspective on Sexual Dimorphism and Phenology
Cited by: 67
Author(s): Martijn F.L. Derks, Sandra Smit, Lucia Salis, Elio Schijlen, Alex Bossers, Christa Mateman, Agata Pijl, Dick de Ridder, Martien A. M. Groenen, Marcel E. Visser, Hendrik‐Jan Megens
Software Mentions: 1
Published: over 9 years ago

10.1093/gbe/evv170

Metabolic Coevolution in the Bacterial Symbiosis of Whiteflies and Related Plant Sap-Feeding Insects
Cited by: 139
Author(s): Jing Luan, Wenbo Chen, Daniel K. Hasegawa, Alvin M. Simmons, William M. Wintermantel, Kai‐Shu Ling, Zhangjun Fei, Shu‐Sheng Liu, Angela E. Douglas
Software Mentions: 1
Published: about 9 years ago

10.1093/gbe/evw055

Diverse Ecological Strategies Are Encoded by<i>Streptococcus pneumoniae</i>Bacteriocin-Like Peptides
Cited by: 31
Author(s): Eric L. Miller, Monica Abrudan, Ian S. Roberts, Daniel E. Rozen
Software Mentions: 1
Published: over 8 years ago

10.1186/s40851-021-00180-0

Polymorphism in the symmetries of gastric pouch arrangements in the sea anemone D. lineata
Cited by: 1
Author(s): Safiye Esra Sarper, Takamasa Hirai, Take Matsuyama, Shigeru Kuratani, Koichi Fujimoto
Software Mentions: 1
Published: about 3 years ago

10.12688/wellcomeopenres.16168.2

An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples
Cited by: 26
Author(s): Ambroise D. Ahouidi, Mozam Ali, Jacob Almagro-Garcia, Alfred Amambua-Ngwa, Chanaki Amaratunga, Roberto Amato, Lucas Amenga-Etego, Ben Andagalu, Tim Anderson, Voahangy Andrianaranjaka, Tobias O. Apinjoh, Cristina V. Ariani, Elizabeth A. Ashley, Sarah Auburn, Gordon A. Awandare, Hampâté Bâ, Vito Baraka, Alyssa E. Barry, Philip Bejon, Gwladys Bertin, Maciej F. Boni, Steffen Borrmann, Teun Bousema, OraLee H. Branch, Peter C. Bull, George B.J. Busby, Thanat Chookajorn, Kesinee Chotivanich, Antoine Claessens, David J. Conway, Alister G. Craig, Umberto D’Alessandro, Souleymane Dama, Day Npj., Brigitte Denis, Mahamadou Diakité, Abdoulaye Djimdé, Christiane Dolecek, Arjen M. Dondorp, Chris Drakeley, Eleanor Drury, Patrick E. Duffy, Diego F. Echeverry, Thomas G. Egwang, Berhanu Erko, Rick M. Fairhurst, Abdul Faiz, Caterina Fanello, Mark M. Fukuda, Dionicia Gamboa, Anita Ghansah, Lemu Golassa, Sónia Gonçalves, William L. Hamilton, G. L. Abby Harrison, Lee Hart, Christa Henrichs, Tran Tinh Hien, Catherine A. Hill, Abraham Hodgson, Christina Hubbart, Mallika Imwong, Deus S. Ishengoma, Scott A. Jackson, Chris Jacob, Ben Jeffery, Anna E. Jeffreys, Kimberly J. Johnson, Dushyanth Jyothi, Claire Kamaliddin, Edwin Kamau, Mihir Kekre, Krzysztof Henryk Kluczynski, Theerarat Kochakarn, A. Konaté, Dominic P. Kwiatkowski, Myat Phone Kyaw, Pharath Lim, Chanthap Lon, Kovana Marcel Loua, Oumou Maïga-Ascofaré, Claudio Malangone, Magnus Manske, Jutta Marfurt, Kevin Marsh, Mayfong Mayxay, Alistair Miles, Olivo Miotto, Victor A. Mobegi, Olugbenga A. Mokuolu, Jacqui Montgomery, Ivo Müeller, Paul N. Newton, Thuy Nguyen, Thuy-Nhien Nguyen, Harald Noedl, François Nosten, Rintis Noviyanti, Alexis Nzila, Lynette Isabella Ochola‐Oyier, Harold Ocholla, Abraham Oduro, Irene Omedo, Marie A. Onyamboko, Jean-Bosco Ouédraogo, Kolapo M. Oyebola, Richard D. Pearson, Norbert Peshu, Aung Pyae Phyo, C V Plowe, Ric N. Price, Sasithon Pukrittayakamee, Milijaona Randrianarivelojosia, Julian C. Rayner, Pascal Ringwald, Kirk A. Rockett, Katherine Rowlands, Lastenia Ruiz, David Saunders, Alex Shayo, Peter Siba, Victoria Simpson, Jim Stalker, Xin-zhuan Su, Colin J. Sutherland, Shannon Takala-Harrison, Livingstone Tavul, Vandana Thathy, Antoinette Tshefu, Federica Verra, Joseph M. Vinetz, Thomas E. Wellems, Jason P. Wendler, Nicholas J. White, I.G. Wright, William Yavo, Ye Htut
Software Mentions: 1
Published: over 3 years ago

10.1093/gbe/evz199

New Non-Bilaterian Transcriptomes Provide Novel Insights into the Evolution of Coral Skeletomes
Cited by: 19
Author(s): Nicola Conci, Gert Wörheide, Sergio Vargas
Software Mentions: 1
Published: about 5 years ago

10.12688/wellcomeopenres.14720.3

Measurement of language laterality using functional transcranial Doppler ultrasound: a comparison of different tasks
Cited by: 6
Author(s): Zoe Woodhead, Holly A. Rutherford, Dorothy V. M. Bishop
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13567-019-0674-7

Tn-sequencing of Mycoplasma hyopneumoniae and Mycoplasma hyorhinis mutant libraries reveals non-essential genes of porcine mycoplasmas differing in pathogenicity
Cited by: 8
Author(s): Bettina S. Trueeb, Simona Gerber, Dominiek Maes, Walid H. Gharib, Peter Kuhnert
Software Mentions: 1
Published: over 5 years ago

10.1093/gbe/evaa141

Population Size, Sex and Purifying Selection: Comparative Genomics of Two Sister Taxa of the Wild Yeast Saccharomyces paradoxus
Cited by: 4
Author(s): Vassiliki Koufopanou, Susan Lomas, O. Pronina, Pedro Almeida, José Paulo Sampaio, Timothy A. Mousseau, Gianni Liti, Austin Burt
Software Mentions: 1
Published: over 4 years ago

10.1093/gbe/evaa190

Reconstructing the Invasion Route of the P-Element in<i>Drosophila melanogaster</i>Using Extant Population Samples
Cited by: 2
Author(s): Lukas Weilguny, Christos Vlachos, Divya Selvaraju, Robert Kofler
Software Mentions: 1
Published: about 4 years ago

10.1186/s13567-019-0639-x

Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties
Cited by: 10
Author(s): Roderick M. Card, Tom La, Eric Burrough, Richard J. Ellis, Javier Núñez-García, Jill R. Thomson, Maxime Mahu, Nyree D. Phillips, David J. Hampson, Judith Rohde, Alexander W. Tucker
Software Mentions: 1
Published: over 5 years ago

10.1186/s13073-017-0425-1

Intersect-then-combine approach: improving the performance of somatic variant calling in whole exome sequencing data using multiple aligners and callers
Cited by: 44
Author(s): Maurizio Callari, Stephen‐John Sammut, Leticia De Mattos-Arruda, Alejandra Bruna, Oscar M. Rueda, Suet-Feung Chin, Carlos Caldas
Software Mentions: 1
Published: over 7 years ago

10.15252/msb.20209902

A dynamic, spatially periodic, micro‐pattern of HES5 underlies neurogenesis in the mouse spinal cord
Cited by: 10
Author(s): Veronica Biga, Joshua Hawley, Ximena Soto, Emma Johns, Daniel Han, Hayley Bennett, Antony D Adamson, Jochen Kursawe, Paul Glendinning, Cerys Manning, Nancy Papalopulu
Software Mentions: 1
Published: over 3 years ago

10.1016/j.gpb.2017.04.005

Ribosome Profiling Reveals Genome-wide Cellular Translational Regulation upon Heat Stress in Escherichia coli
Cited by: 25
Author(s): Yanqing Zhang, Zhao Xiao, Qin Zou, Jau–Shiung Fang, Qifan Wang, Xuerui Yang, Ning Gao
Software Mentions: 1
Published: about 7 years ago

10.1038/s41380-019-0598-7

Novel role for mineralocorticoid receptors in control of a neuronal phenotype
Cited by: 33
Author(s): Katharine E. McCann, Daniel Lustberg, Emma K Shaughnessy, Kelly E. Carstens, Shannon Farris, Georgia M. Alexander, Daniel Radzicki, Mei Zhao
Software Mentions: 1
Published: about 5 years ago

10.1016/j.molp.2016.11.015

Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut
Cited by: 102
Author(s): Josh Clevenger, Ye Chu, Carolina Chavarro, Gaurav Agarwal, David J. Bertioli, Soraya C. M. Leal‐Bertioli, Manish K. Pandey, Justin N. Vaughn, Brian Abernathy, Noelle A. Barkley, Ran Hovav, Mark D. Burow, Spurthi N. Nayak, Annapurna Chitikineni, T. G. Isleib, C. Corley Holbrook, Scott A. Jackson, Rajeev K. Varshney, Peggy Ozias‐Akins
Software Mentions: 1
Published: almost 8 years ago

10.1111/mmi.14433

High‐throughput transposon sequencing highlights the cell wall as an important barrier for osmotic stress in methicillin resistant <i>Staphylococcus aureus</i> and underlines a tailored response to different osmotic stressors
Cited by: 32
Author(s): Christopher Schuster, David M. Wiedemann, Freja Kirsebom, Marina Santiago, Suzanne Walker, Angelika Gründling
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-13-41

The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
Cited by: 44
Author(s): Domenico De Paola, Federica Cattonaro, Domenico Pignone, Gabriella Sonnante
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-8-465

Diversity in conserved genes in tomato
Cited by: 68
Author(s): Allen Van Deynze, Kevin Stoffel, C. Robin Buell, Alexander Kozik, Jia Liu, Esther van der Knaap, David M. Francis
Software Mentions: 1
Published: almost 18 years ago

10.7554/eLife.31625

Internal amino acid state modulates yeast taste neurons to support protein homeostasis in Drosophila
Cited by: 79
Author(s): Kathrin Steck, Samuel J Walker, Pavel M. Itskov, Célia Baltazar, José-Maria Moreira, Carlos Ribeiro
Software Mentions: 1
Published: almost 7 years ago

10.1186/1750-1172-7-90

Specific combination of compound heterozygous mutations in 17β-hydroxysteroid dehydrogenase type 4 (HSD17B4) defines a new subtype of D-bifunctional protein deficiency
Cited by: 58
Author(s): Hugh J. McMillan, Thea Worthylake, Jeremy Schwartzentruber, Chloe Gottlieb, Sarah Lawrence, Alex MacKenzie, Chandree L. Beaulieu, Petra Mooyer, Ronald J. A. Wanders, Jacek Majewski, Dennis E. Bulman, Michael T. Geraghty, Sacha Ferdinandusse, Kym M. Boycott
Software Mentions: 1
Published: almost 12 years ago

10.1111/j.1365-2958.2010.07479.x

The cell cycle of Leishmania: morphogenetic events and their implications for parasite biology
Cited by: 159
Author(s): Richard J. Wheeler, Eva Gluenz, Keith Gull
Software Mentions: 1
Published: almost 14 years ago

10.1007/s00438-020-01666-w

Non-additive (dominance) effects of genetic variants associated with refractive error and myopia
Cited by: 11
Author(s): Alfred Pozarickij, Cathy Williams, Jeremy A. Guggenheim
Software Mentions: 1
Published: over 4 years ago

10.1186/1750-1172-8-62

Intellectual disability associated with a homozygous missense mutation in THOC6
Cited by: 45
Author(s): Chandree L. Beaulieu, Lijia Huang, A. Micheil Innes, Marie‐Andrée Akimenko, Erik G. Puffenberger, Charles E. Schwartz, Jerry Paul, Carole Ober, Robert A. Hegele, David McLeod, Jeremy Schwartzentruber, Jacek Majewski, Dennis E. Bulman, Jillian S. Parboosingh, Kym M. Boycott
Software Mentions: 1
Published: over 11 years ago

10.1007/s00438-014-0932-3

Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL-hotspot” region for drought tolerance in chickpea
Cited by: 172
Author(s): Deepa Jaganathan, Mahendar Thudi, Sandip M. Kale, Sarwar Azam, Manish Roorkiwal, Pooran M. Gaur, P. B. Kavi Kishor, Henry T. Nguyen, Tim Sutton, Rajeev K. Varshney
Software Mentions: 1
Published: about 10 years ago

10.1002/hbm.24307

A novel concurrent TMS‐fMRI method to reveal propagation patterns of prefrontal magnetic brain stimulation
Cited by: 69
Author(s): Jord Vink, Stefano Mandija, Petar I. Petrov, Cornells A. T. van den Berg, Iris Sommer, Sebastiaan F. W. Neggers
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-12-184

Accurate and exact CNV identification from targeted high-throughput sequence data
Cited by: 176
Author(s): Alexander Nord, Ming-Ming Lee, Mary Claire King, Tom Walsh
Software Mentions: 1
Published: over 13 years ago

10.7554/eLife.26607

Mechanism of bidirectional thermotaxis in Escherichia coli
Cited by: 45
Author(s): Anja Paulick, Vladimir Jakovljevic, SiMing Zhang, Michael Erickstad, Alex Groisman, Yigal Meir, William S. Ryu, Ned S. Wingreen, Victor Sourjik
Software Mentions: 1
Published: over 7 years ago

10.1038/hgv.2015.65

A catalog of hemizygous variation in 127 22q11 deletion patients
Cited by: 7
Author(s): Matthew S. Hestand, Beata Nowakowska, Elfi Vergaelen, Jeroen Van Houdt, Luc Dehaspe, Joshua A. Suhl, Jurgen Del-Favero, Geert Mortier, Elaine H. Zackai, Ann Swillen, Koenraad Devriendt, Raquel E. Gur, Donna M. McDonald‐McGinn, Stephen T. Warren, Beverly S. Emanuel, Joris Robert Vermeesch
Software Mentions: 1
Published: almost 9 years ago

10.1109/JTEHM.2020.2969152

Intraoperative Localization of STN During DBS Surgery Using a Data-Driven Model
Cited by: 12
Author(s): Mahsa Khosravi, S. Farokh Atashzar, Greydon Gilmore, Mandar Jog, Rajni V. Patel
Software Mentions: 1
Published: almost 5 years ago

10.1128/JVI.01217-18

Determining the Mutation Bias of Favipiravir in Influenza Virus Using Next-Generation Sequencing
Cited by: 37
Author(s): Daniel H. Goldhill, Pinky Langat, Hongyao Xie, Mónica Galiano, Shahjahan Miah, Paul Kellam, Maria Zambon, Angie Lackenby, William Barclay
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules26092410

Metabolomic Study of Heterotrophically Grown Chlorella sp. Isolated from Wastewater in Northern Sweden
Cited by: 2
Author(s): Jean Claude Nzayisenga, Anita Sellstedt
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-10-555

Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species
Cited by: 78
Author(s): Diana Bellin, Alberto Ferrarini, A. Chimento, Olaf Kaiser, Natasha Levenkova, Pascal Bouffard, Massimo Delledonne
Software Mentions: 1
Published: almost 15 years ago

10.3390/molecules26123591

Quantitative Proteomics and Differential Protein Abundance Analysis after Depletion of Putative mRNA Receptors in the ER Membrane of Human Cells Identifies Novel Aspects of mRNA Targeting to the ER
Cited by: 11
Author(s): Pratiti Bhadra, Stefan Schorr, Monika Lerner, Duy Nguyen, Johanna Dudek, Friedrich Förster, Volkhard Helms, Sven Lang, Richard Zimmermann
Software Mentions: 1
Published: over 3 years ago

10.1002/ana.24466

Rare coding mutations identified by sequencing of <scp>A</scp> lzheimer disease genome‐wide association studies loci
Cited by: 119
Author(s): Badri N. Vardarajan, Mahdi Ghani, A Kahn, Stephanie Sheikh, Christine Sato, Sandra Barral, Joseph H. Lee, Rong Cheng, Christiane Reitz, Rafael Lantigua, Dolly Reyes‐Dumeyer, Martin Medrano, Ivonne Z. Jiménez‐Velázquez, Ekaterina Rogaeva, Peter St George‐Hyslop, Richard Mayeux
Software Mentions: 1
Published: over 9 years ago

10.1111/1755-0998.12942

New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods
Cited by: 61
Author(s): Daniel Marquina, Anders F. Andersson, Fredrik Ronquist
Software Mentions: 1
Published: about 6 years ago

10.1186/1755-8166-7-S1-P86

Comparative analysis of human mitochondrial methylome show distinct patterns of epigenetic regulation in mitochondria
Cited by: 1
Author(s): Sourav Ghosh, Shantanu Sengupta, Vinod Scaria
Software Mentions: 1
Published: almost 11 years ago

10.1074/mcp.M116.065078

Quantitative Shotgun Proteomics Unveils Candidate Novel Esophageal Adenocarcinoma (EAC)-specific Proteins
Cited by: 16
Author(s): J. Robert O’Neill, HuiSong Pak, Erola Pairo-Castineira, Vicki Save, Simon Paterson-Brown, Rudolf Nenutil, Bořivoj Vojtěšek, Ian M. Overton, Alex Scherl, Ted R. Hupp
Software Mentions: 1
Published: over 7 years ago

10.1002/acm2.12466

Use of a commercial ion chamber detector array for the measurement of high spatial-resolution photon beam profiles
Cited by: 3
Author(s): Vida Karimnia, Matthew D. Belley, Robert L. Rodgers, Michael Price
Software Mentions: 1
Published: about 6 years ago

10.1007/s10803-018-3799-z

Sex Differences in Social Attention in Infants at Risk for Autism
Cited by: 10
Author(s): Johan Lundin Kleberg, Pär Nyström, Sven Bölte, Terje Falck‐Ytter
Software Mentions: 1
Published: almost 6 years ago

10.1007/s10803-019-03974-6

Visual Disengagement: Genetic Architecture and Relation to Autistic Traits in the General Population
Cited by: 6
Author(s): Monica Siqueiros Sanchez, Erik Pettersson, Daniel P. Kennedy, Sven Bölte, Paul Lichtenstein, Brian M. D’Onofrio, Terje Falck‐Ytter
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.31157

Naked mole-rat mortality rates defy Gompertzian laws by not increasing with age
Cited by: 195
Author(s): J. Graham Ruby, Megan Smith, Rochelle Buffenstein
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.58706

Membrane voltage dysregulation driven by metabolic dysfunction underlies bactericidal activity of aminoglycosides
Cited by: 43
Author(s): Giancarlo N. Bruni, Joel M. Kralj
Software Mentions: 1
Published: over 4 years ago

10.1186/1754-1611-6-20

Directed evolution of bright mutants of an oxygen-independent flavin-binding fluorescent protein from Pseudomonas putida
Cited by: 42
Author(s): Arnab Mukherjee, Kevin B. Weyant, Joshua Walker, Charles M. Schroeder
Software Mentions: 1
Published: almost 12 years ago

10.1083/jcb.201903080

Polar relaxation by dynein-mediated removal of cortical myosin II
Cited by: 16
Author(s): Bernardo Chapa-y-Lazo, Motonari Hamanaka, Alexander Wray, Mohan K. Balasubramanian, Masanori Mishima
Software Mentions: 1
Published: over 4 years ago

10.1186/s12943-015-0411-4

Profiling of the small RNA populations in human testicular germ cell tumors shows global loss of piRNAs
Cited by: 47
Author(s): Trine B. Rounge, Kari Furu, Rolf Inge Skotheim, Trine B. Haugen, Tom Grotmol, Espen Enerly
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.64412

Live imaging and biophysical modeling support a button-based mechanism of somatic homolog pairing in Drosophila
Cited by: 17
Author(s): Myron Child, Jack R. Bateman, Amir Jahangiri, Armando Reimer, Nicholas C Lammers, Nica Sabouni, Diego Villamarin, Grace C. McKenzie‐Smith, Justine E. Johnson, Daniel Jost, Hernán G. García
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm10010160

Three-Dimensional Quantification of Bone Mineral Density in the Distal Femur and Proximal Tibia Based on Computed Tomography: In Vitro Evaluation of an Extended Standardization Method
Cited by: 2
Author(s): Hugo Babel, Patrick Omoumi, Killian Cosendey, Hugues Cadas, Brigitte M. Jolles, Julien Favre
Software Mentions: 1
Published: almost 4 years ago

10.1093/molbev/msu225

Evolution of a Genome-Encoded Bias in Amino Acid Biosynthetic Pathways Is a Potential Indicator of Amino Acid Dynamics in the Environment
Cited by: 1
Author(s): Rick A. Fasani, Michael A. Savageau
Software Mentions: 1
Published: over 10 years ago

10.1128/JCM.01318-18

Coccidioidomycosis Complement Fixation Titer Trends in the Age of Antifungals
Cited by: 36
Author(s): Ian Howard Mchardy, Bao Tran Dinh, Sarah Waldman, Ethan R. Stewart, Derek Bays, Demosthenes Pappagianis, George R. Thompson
Software Mentions: 1
Published: almost 6 years ago

10.1002/cne.24186

Segregated fronto-cortical and midbrain connections in the mouse and their relation to approach and avoidance orienting behaviors
Cited by: 20
Author(s): Michael A. Savage, R McQuade, Alexander Thiele
Software Mentions: 1
Published: over 7 years ago