Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: cufflinks
https://packages.ecosyste.ms/registries/pypi.org/packages/cufflinks
Productivity Tools for Plotly + Pandas
28 versions
Latest release: over 1 year ago
20 dependent packages
81,167 downloads last month
Papers Mentioning cufflinks 415
10.1038/srep28476
Amber Light (590 nm) Induces the Breakdown of Lipid Droplets through Autophagy-Related Lysosomal Degradation in Differentiated AdipocytesCited by: 9
Author(s): Min Sik Choi, Hyoung-June Kim, Mira Ham, Dongkyu Choi, Tae Ryong Lee, Dong Wook Shin
Software Mentions: 1
Published: over 8 years ago
10.1186/s12920-016-0225-2
Adaptation of a RAS pathway activation signature from FF to FFPE tissues in colorectal cancerCited by: 21
Author(s): Bernard Omolo, Mingli Yang, Fang Yin Lo, Michael J. Schell, Sharon Austin, Kellie Howard, Anup Madan, Timothy J. Yeatman
Software Mentions: 1
Published: about 8 years ago
10.1038/srep38436
Co-expression network analyses identify functional modules associated with development and stress response in Gossypium arboreumCited by: 30
Author(s): Qi You, Liwei Zhang, Xin Yi, Kang Zhang, Dongxia Yao, Xueyan Zhang, Qianhua Wang, Xinhua Zhao, Yi Ling, Wenying Xu, Fuguang Li, Zhen Su
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2019.01398
Multiple-Omics Techniques Reveal the Role of Glycerophospholipid Metabolic Pathway in the Response of Saccharomyces cerevisiae Against Hypoxic StressCited by: 26
Author(s): Zhengkun Xia, Xuelin Zhou, Jingyi Li, Lei Li, Yi Ma, Yi Wu, Zhong zi Huang, Xiaorong Li, Ping Xu, Ming Xue
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-017-02912-9
Oncopig Soft-Tissue Sarcomas Recapitulate Key Transcriptional Features of Human SarcomasCited by: 21
Author(s): Kyle M. Schachtschneider, Yingkai Liu, Suvi Mäkeläinen, Ole Madsen, Laurie A. Rund, Martien A. M. Groenen, Lawrence B. Schook
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-06342-5
Transcriptome profiling of monocytes from XLA patients revealed the innate immune function dysregulation due to the BTK gene expression deficiencyCited by: 15
Author(s): Hoda Mirsafian, Adiratna Mat Ripen, Wai-Mun Leong, Chai Teng Chear, Saharuddin Bin Mohamad, Amir Feisal Merican
Software Mentions: 1
Published: over 7 years ago
10.3389/fimmu.2018.01301
Genetically Induced Tumors in the Oncopig Model Invoke an Antitumor Immune Response Dominated by Cytotoxic CD8β+ T Cells and Differentiated γδ T Cells Alongside a Regulatory Response Mediated by FOXP3+ T Cells and Immunoregulatory MoleculesCited by: 14
Author(s): Nana Haahr Overgaard, Daniel R. Principe, Kyle M. Schachtschneider, Jeanne Toft Jakobsen, Laurie A. Rund, Paul J. Grippo, Lawrence B. Schook, Gregers Jungersen
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-015-1748-1
Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencingCited by: 30
Author(s): Shishir Gupta, Maria Kupper, Carolin Ratzka, Heike Feldhaar, Andreas Vilcinskas, Roy Gross, Thomas Dandekar, Frank Förster
Software Mentions: 1
Published: over 9 years ago
10.3389/fgene.2021.686852
Genome-Wide Identification of the Early Flowering 4 (ELF4) Gene Family in Cotton and Silent GhELF4-1 and GhEFL3-6 Decreased Cotton Stress ResistanceCited by: 1
Author(s): Miaomiao Tian, Aimin Wu, Meng Zhang, Jingjing Zhang, Hengling Wei, Yongsheng Xu, Liang Ma, Jianhua Lü, Xiaokang Fu, Hantao Wang, Shuang Yu
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2018.00570
A Genome-Wide Study of Allele-Specific Expression in Colorectal CancerCited by: 24
Author(s): Zhi Liu, Xiao Dong, Yixue Li
Software Mentions: 1
Published: almost 6 years ago
10.3389/fgene.2020.00964
Genome-Wide Identification and Expression Analysis of the NHX (Sodium/Hydrogen Antiporter) Gene Family in CottonCited by: 15
Author(s): Xiaokang Fu, Zhengying Lu, Hengling Wei, Jingjing Zhang, Yongsheng Xu, Aimin Wu, Liang Ma, Meng Kang, Jianhua Lü, Hantao Wang, Shuang Yu
Software Mentions: 1
Published: over 4 years ago
10.3389/fcell.2021.653188
Effect of Gender to Fat Deposition in Yaks Based on Transcriptomic and Metabolomics AnalysisCited by: 5
Author(s): Lin Xiong, Jie Pei, Xiaoyun Wu, Qudratullah Kalwar, Ping Yan, Xian Guo
Software Mentions: 1
Published: over 3 years ago
10.1002/2211-5463.12176
Effects of Arthrocen, an avocado/soy unsaponifiables agent, on inflammatory mediators and gene expression in human chondrocytesCited by: 11
Author(s): Ramin Goudarzi, Jared F. Taylor, Puya G. Yazdi, Brian Pedersen
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-017-15112-2
A role for small secreted proteins (SSPs) in a saprophytic fungal lifestyle: Ligninolytic enzyme regulation in Pleurotus ostreatusCited by: 29
Author(s): Daria Feldman, David Kowbel, N. Louise Glass, Oded Yarden, Yitzhak Hadar
Software Mentions: 1
Published: about 7 years ago