Ecosyste.ms: Papers

10.15252/embj.201592337

Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis
Cited by: 154
Author(s): Atul Kumar, Jacob D. Aguirre, Tara E.C. Condos, R.J. Martinez-Torres, Viduth K. Chaugule, Rachel Toth, Ramasubramanian Sundaramoorthy, Pascal Mercier, Axel Knebel, Donald E. Spratt, Kathryn R. Barber, Gary S. Shaw, Helen Walden
Software Mentions: 1
Published: over 9 years ago

10.1186/1756-8935-5-5

The conformational flexibility of the C-terminus of histone H4 promotes histone octamer and nucleosome stability and yeast viability
Cited by: 20
Author(s): Myrriah Chavez, Jean K Scorgie, Briana K. Dennehey, Seth Noone, Jessica K. Tyler, Mair E. A. Churchill
Software Mentions: 1
Published: over 12 years ago

10.1111/febs.13928

Crystal structure of a peptidyl-dipeptidase K-26-DCP from<i>Actinomycete</i>in complex with its natural inhibitor
Cited by: 6
Author(s): Geoffrey Masuyer, Gyles E. Cozier, Glenna J. Kramer, Brian O. Bachmann, K. Ravi Acharya
Software Mentions: 1
Published: about 8 years ago

10.1111/febs.13277

The C‐terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase
Cited by: 33
Author(s): Tomoko Nishino, Ken Okamoto, Yuko Kawaguchi, Tomohiro Matsumura, B.T. Eger, E.F. Pai, Tokuzo Nishino
Software Mentions: 1
Published: over 9 years ago

10.1111/j.1742-4658.2011.08414.x

Inhibition mechanism of human galectin‐7 by a novel galactose‐benzylphosphate inhibitor
Cited by: 18
Author(s): Geoffrey Masuyer, T. Jabeen, Christopher T. Öberg, Hakon Leffler, Ulf J. Nilsson, K. Ravi Acharya
Software Mentions: 1
Published: almost 13 years ago

10.1111/febs.12038

Structural basis of peptide recognition by the angiotensin‐1 converting enzyme homologue An<scp>CE</scp>from<i><scp>D</scp>rosophila melanogaster</i>
Cited by: 20
Author(s): M. Akif, Geoffrey Masuyer, Richard J. Bingham, Edward D. Sturrock, R. Elwyn Isaac, K. Ravi Acharya
Software Mentions: 1
Published: almost 12 years ago

10.1111/febs.14750

Structural and functional characterization of a frataxin from a thermophilic organism
Cited by: 3
Author(s): Masooma Rasheed, Mostafa Jamshidiha, Rita Puglisi, Robert Yan, Ernesto Cota, Annalisa Pastore
Software Mentions: 1
Published: almost 6 years ago

10.1111/febs.14695

Crystal structures of VIM‐1 complexes explain active site heterogeneity in VIM‐class metallo‐β‐lactamases
Cited by: 28
Author(s): Ramya Salimraj, P. Hinchliffe, Magda Kosmopoulou, Jonathan M. Tyrrell, Jürgen Brem, Sander S. van Berkel, Anil Kumar Verma, Raymond J. Owens, M.A. McDonough, Timothy R. Walsh, Christopher J. Schofield, James Spencer
Software Mentions: 1
Published: almost 6 years ago

10.1111/febs.14790

Control and regulation of S‐Adenosylmethionine biosynthesis by the regulatory β subunit and quinolone‐based compounds
Cited by: 9
Author(s): Jiraporn Panmanee, Jack Bradley‐Clarke, José M. Mato, Paul M. O’Neill, S.V. Antonyuk, S.S. Hasnain
Software Mentions: 1
Published: over 5 years ago

10.1111/febs.12660

Crystal structures of highly specific phosphinic tripeptide enantiomers in complex with the angiotensin‐<scp>I</scp>converting enzyme
Cited by: 26
Author(s): Geoffrey Masuyer, M. Akif, Bertrand Czarny, Fabrice Beau, S.L.U. Schwager, Edward D. Sturrock, R. Elwyn Isaac, Vincent Dive, K. Ravi Acharya
Software Mentions: 1
Published: almost 11 years ago

10.1111/j.1742-4658.2010.07976.x

Functional and structural analyses of N-acylsulfonamide-linked dinucleoside inhibitors of RNase A
Cited by: 12
Author(s): N. Thiyagarajan, Bryan D. Smith, Ronald T. Raines, K. Ravi Acharya
Software Mentions: 1
Published: almost 14 years ago

10.1002/1873-3468.13968

A missense mutation in a patient with developmental delay affects the activity and structure of the hexosamine biosynthetic pathway enzyme AGX1
Cited by: 3
Author(s): Xiping Chen, O.G. Raimi, Andrew T. Ferenbach, Daan M. F. van Aalten
Software Mentions: 1
Published: about 4 years ago

10.1002/2211-5463.12790

Crystal structure of botulinum neurotoxin subtype A3 cell binding domain in complex with GD1a co‐receptor ganglioside
Cited by: 6
Author(s): Kyle S. Gregory, Sai Man Liu, K. Ravi Acharya
Software Mentions: 1
Published: almost 5 years ago

10.1002/2211-5463.12837

Biochemical and structural characterization of a thermostable Dps protein with His‐type ferroxidase centers and outer metal‐binding sites
Cited by: 8
Author(s): Takuo Minato, Takamasa Teramoto, Yoshimitsu Kakuta, Seiji Ogo, Ki Seok Yoon
Software Mentions: 1
Published: over 4 years ago

10.1002/2211-5463.12658

A novel series of human dihydroorotate dehydrogenase inhibitors discovered by <i>in vitro</i> screening: inhibition activity and crystallographic binding mode
Cited by: 6
Author(s): Ting Zeng, Zeping Zuo, Youfu Luo, Yinglan Zhao, Yamei Yu, Qiang Chen
Software Mentions: 1
Published: over 5 years ago

10.1002/2211-5463.12515

Oxidation‐resistant and thermostable forms of alpha‐1 antitrypsin from <i>Escherichia coli</i> inclusion bodies
Cited by: 15
Author(s): Wenjun Zhu, Lanfen Li, Mingjing Deng, Bo Wang, Mengfei Li, Guofang Ding, Zuisu Yang, Dan Medynski, Xiangyang Lin, Ying Ouyang, Jirui Lin, Luyuan Li, Xinli Lin
Software Mentions: 1
Published: about 6 years ago

10.1002/2211-5463.13041

The high catalytic rate of the cold‐active <i>Vibrio</i> alkaline phosphatase requires a hydrogen bonding network involving a large interface loop
Cited by: 3
Author(s): Jens Guðmundur Hjörleifsson, Ronny Helland, Manuela Magnúsdóttir, Bjarni Ásgeirsson
Software Mentions: 1
Published: almost 4 years ago

10.1002/2211-5463.12201

Thermo‐kinetic analysis space expansion for cyclophilin‐ligand interactions – identification of a new nonpeptide inhibitor using Biacore™ T200
Cited by: 7
Author(s): Martin A. Wear, Matthew W. Nowicki, Elizabeth A. Blackburn, I.W. McNae, Malcolm D. Walkinshaw
Software Mentions: 1
Published: over 7 years ago

10.1002/2211-5463.12691

New insights into structural and functional relationships between LonA proteases and ClpB chaperones
Cited by: 14
Author(s): T. V. Rotanova, А. Г. Андрианова, А. М. Куджаев, Mi Li, Istvan Botos, Alexander Wlodawer, Alla Gustchina
Software Mentions: 1
Published: over 5 years ago

10.1002/2211-5463.12480

Co‐translational folding of α‐helical proteins: structural studies of intermediate‐length variants of the λ repressor
Cited by: 1
Author(s): Yuya Hanazono, Kazuki Takeda, Kunio Miki
Software Mentions: 1
Published: over 6 years ago

10.1002/2211-5463.12710

The crystal structure of AcrR from <i>Mycobacterium tuberculosis</i> reveals a one‐component transcriptional regulation mechanism
Cited by: 7
Author(s): Sung-Min Kang, Do-Hee Kim, Chun Jin, Hee‐Chul Ahn, Bong-Jin Lee
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.02007

Structural Basis for Properdin Oligomerization and Convertase Stimulation in the Human Complement System
Cited by: 46
Author(s): Dennis Pedersen, Trine A.F. Gadeberg, Caroline Thomas, Yong Wang, Nicolas Joram, Rasmus K. Jensen, Sofia Mm Mazarakis, Margot Revel, Carine El Sissy, Steen V. Petersen, Kresten Lindorff‐Larsen, Steffen Thiel, N.S. Laursen, Véronique Frémeaux‐Bacchi, Gregers Rom Andersen
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.014478

Structural and functional studies of Arabidopsis thaliana legumain beta reveal isoform specific mechanisms of activation and substrate recognition
Cited by: 22
Author(s): Elfriede Dall, Florian B. Zauner, Wai Tuck Soh, Fatih Demir, S.O. Dahms, Chiara Cabrele, Pitter F. Huesgen, Hans Brandstetter
Software Mentions: 1
Published: about 4 years ago

10.1074/jbc.RA120.016573

Dissecting the molecular determinants of clinical PARP1 inhibitor selectivity for tankyrase1
Cited by: 23
Author(s): Kevin Ryan, Ben Bolaňos, Marissa L. Smith, Prakash B. Palde, Paulina Delgado Cuenca, Todd VanArsdale, Sherry Niessen, Lianglin Zhang, Douglas C. Behenna, Martha A. Ornelas, Khanh Tran, Stephen E. Kaiser, Lawrence Lum, Albert Stewart, K.S. Gajiwala
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.ppat.1002556

Characterization of Monomeric Intermediates during VSV Glycoprotein Structural Transition
Cited by: 52
Author(s): Aurélie A. Albertini, C. Mérigoux, Sonia Libersou, Karine Madiona, Stéphane Bressanelli, Stéphane Roche, Jean Lepault, Ronald Melki, Patrice Vachette, Yves Gaudin
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1006549

Staphylococcal enterotoxin-like X (SElX) is a unique superantigen with functional features of two major families of staphylococcal virulence factors
Cited by: 30
Author(s): Ries J. Langley, Yi Tian Ting, Fiona Clow, Paul G. Young, Fiona J. Radcliff, Jeong Min Choi, Richard P. Sequeira, Silva Holtfreter, Heather M. Baker, John D. Fraser
Software Mentions: 1
Published: about 7 years ago

10.1038/srep46022

In search of tail-anchored protein machinery in plants: reevaluating the role of arsenite transporters
Cited by: 8
Author(s): M. Maestre-Reyna, Shu Mei Wu, Yevvon Yi-Chi Chang, Chi‐Chih Chen, Alvaro Maestre-Reyna, Andrew H.J. Wang, Hung‐Hao Chang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-31259-y

A fundamental catalytic difference between zinc and manganese dependent enzymes revealed in a bacterial isatin hydrolase
Cited by: 10
Author(s): T. Sommer, Kaare Bjerregaard-Andersen, Lalita Uribe, Michael Etzerodt, Gregor Diezemann, Jürgen Gauß, M. Cascella, J. Preben Morth
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.00430-18

Identification of the I38T PA Substitution as a Resistance Marker for Next-Generation Influenza Virus Endonuclease Inhibitors
Cited by: 46
Author(s): Jones Jc, Gyanendra Kumar, Subrata Barman, Isabel Nájera, Stephen W. White, Richard J. Webby, Elena A. Govorkova
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.59555

Cryo-EM structure of the lysosomal chloride-proton exchanger CLC-7 in complex with OSTM1
Cited by: 34
Author(s): Marina Schrecker, Julia Korobenko, Richard K Hite
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.04871

G-actin provides substrate-specificity to eukaryotic initiation factor 2α holophosphatases
Cited by: 60
Author(s): Ruming Chen, Cláudia Rato, Yahui Yan, Ana Crespillo-Casado, Hanna J Clarke, Heather P. Harding, Stefan J. Marciniak, Randy J. Read, David Ron
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.46924

Structure-based inhibitors of amyloid beta core suggest a common interface with tau
Cited by: 76
Author(s): Sarah L. Griner, Paul M. Seidler, Jeannette T. Bowler, Kevin Murray, Tianxiao Yang, Shruti Sahay, M.R. Sawaya, Duilio Cascio, José A. Rodríguez, Stephan Philipp, Justyna Sosna, Charles G. Glabe, Tamir Gonen, David Eisenberg
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.53430

Gating and selectivity mechanisms for the lysosomal K+ channel TMEM175
Cited by: 22
Author(s): SeCheol Oh, Navid Paknejad, Richard K Hite
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms22020645

The Cryogenic Electron Microscopy Structure of the Cell Adhesion Regulator Metavinculin Reveals an Isoform-Specific Kinked Helix in Its Cytoskeleton Binding Domain
Cited by: 1
Author(s): Erumbi S. Rangarajan, Tina Izard
Software Mentions: 1
Published: almost 4 years ago

10.1098/rsob.130051

Correlating efficacy and desensitization with GluK2 ligand-binding domain movements
Cited by: 5
Author(s): Naushaba Nayeem, Olga Mayans, Tim Green
Software Mentions: 1
Published: over 11 years ago

10.1107/S2059798317003382

Tools for ligand validation in<i>Coot</i>
Cited by: 59
Author(s): Paul Emsley
Software Mentions: 1
Published: over 7 years ago