Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: cobra
https://packages.ecosyste.ms/registries/pypi.org/packages/cobra
COBRApy is a package for constraint-based modeling of metabolic networks.
98 versions
Latest release: about 1 year ago
37 dependent packages
9,511 downloads last month
Papers Mentioning cobra 8
10.1371/journal.pcbi.1006644
A computational knowledge-base elucidates the response of Staphylococcus aureus to different media typesCited by: 35
Author(s): Yara Seif, Jonathan M. Monk, Nathan Mih, Hannah Tsunemoto, Saugat Poudel, Cristal Zuñiga, Jared T. Broddrick, Karsten Zengler, Jaehyung Kim
Software Mentions: 7
Published: almost 6 years ago
10.1186/s12934-016-0456-0
Diversity of flux distribution in central carbon metabolism of S. cerevisiae strains from diverse environmentsCited by: 24
Author(s): Thibault Nidelet, Pascale Brial, Carole Camarasa, Sylvie Dequin
Software Mentions: 6
Published: over 8 years ago
10.1371/journal.pcbi.1007786
Minimizing the number of optimizations for efficient community dynamic flux balance analysisCited by: 12
Author(s): James D. Brunner, Nicholas Chia
Software Mentions: 5
Published: about 4 years ago
10.1128/mSystems.00913-20
Genome-Scale Metabolic Models and Machine Learning Reveal Genetic Determinants of Antibiotic Resistance in Escherichia coli and Unravel the Underlying Metabolic Adaptation MechanismsCited by: 23
Author(s): Nicole Pearcy, Yue Hu, Michelle Baker, Alexandre Maciel-Guerra, Ning Xue, Wei Wang, Jasmeet Kaler, Zong–Gen Peng, Fengqin Li, Tania Dottorini
Software Mentions: 5
Published: about 3 years ago
10.7554/eLife.49305
Evolution of C4 photosynthesis predicted by constraint-based modellingCited by: 42
Author(s): Mary Ann Blätke, Andrea Bräutigam
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12859-020-3410-4
FastMM: an efficient toolbox for personalized constraint-based metabolic modelingCited by: 6
Author(s): Gong‐Hua Li, Shao‐Xing Dai, Feifei Han, Weihua Li, Jing‐Fei Huang, Wenzhong Xiao
Software Mentions: 4
Published: over 4 years ago
10.3390/bioengineering8080103
TCA Cycle and Its Relationship with Clavulanic Acid Production: A Further Interpretation by Using a Reduced Genome-Scale Metabolic Model of Streptomyces clavuligerusCited by: 3
Author(s): Howard Ramírez-Malule, Víctor A. López-Agudelo, David Rios, Silvia Ochoa, Rigoberto Ríos‐Estepa, Stefan Junne, Peter Neubauer
Software Mentions: 2
Published: over 3 years ago
10.1111/1751-7915.12871
Fine‐tuning the <i>P. pastoris</i> iMT1026 genome‐scale metabolic model for improved prediction of growth on methanol or glycerol as sole carbon sourcesCited by: 46
Author(s): Màrius Tomàs-Gamisans, Pau Ferrer, Joan Albiol
Software Mentions: 2
Published: about 7 years ago