Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: clustalo
https://packages.ecosyste.ms/registries/pypi.org/packages/clustalo
Python wrapper around libclustalo
3 versions
Latest release: over 4 years ago
1,965 downloads last month
Papers Mentioning clustalo 19
10.1186/s13059-015-0688-z
Ultra-large alignments using phylogeny-aware profilesCited by: 109
Author(s): Nam Nguyen, Siavash Mirarab, Karthik Kumar, Tandy Warnow
Software Mentions: 7
Published: over 9 years ago
10.1002/2211-5463.12509
The amino‐terminal domain of <i>Mycobacterium tuberculosis</i> ClpB protein plays a crucial role in its substrate disaggregation activityCited by: 10
Author(s): Prajna Tripathi, Priyanka Parijat, Vaibhavi Patel, Janendra K. Batra
Software Mentions: 5
Published: about 6 years ago
10.1186/s12864-020-6495-2
Whole-genome sequencing of wild Siberian musk deer (Moschus moschiferus) provides insights into its genetic featuresCited by: 8
Author(s): Yang Li, Menggen Dalai, Rongguo Su, Weili Lin, Myagmarsuren Erdenedalai, Batkhuu Luvsantseren, Chimedragchaa Chimedtseren, Zhen Wang, Surong Hasi
Software Mentions: 5
Published: almost 5 years ago
10.3390/ani11030825
Insights into the Mitochondrial and Nuclear Genome Diversity of Two High Yielding Strains of Laying HensCited by: 5
Author(s): Clara Dreyling, Vera Sommerfeld, Hanna Iffland, Jörn Bennewitz, M. Rodehutscord, Martin Hasselmann
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0228722
Iron metabolic pathways in the processes of sponge plasticityCited by: 8
Author(s): Alexander D. Finoshin, Kim I. Adameyko, Kirill V. Mikhailov, О. И. Кравчук, Anton Georgiev, Н. Г. Горностаев, Igor A. Kosevich, Victor S. Mikhailov, Guzel Gazizova, Elena Shagimardanova, Oleg Gusev, Yu. V. Lyupina
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12862-017-1001-4
Uncovering missing pieces: duplication and deletion history of arrestins in deuterostomesCited by: 38
Author(s): Henrike Indrischek, Sonja J. Prohaska, Vsevolod V. Gurevich, Eugenia V. Gurevich, Peter F. Stadler
Software Mentions: 3
Published: over 7 years ago
10.1093/gbe/evz023
PDZ Domains Across the Microbial World: Molecular Link to the Proteases, Stress Response, and Protein SynthesisCited by: 10
Author(s): Vijaykumar Yogesh Muley, Yusuf Akhter, Sanjeev Galande
Software Mentions: 3
Published: almost 6 years ago
10.1093/gbe/evw111
Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen<i>Ca.</i>Ichthyocystis Revealed by Direct Sequencing of EpitheliocystsCited by: 12
Author(s): Weihong Qi, Lloyd Vaughan, Pantelis Katharios, Ralph Schlapbach, Helena M. B. Seth-Smith
Software Mentions: 3
Published: over 8 years ago
10.1093/bioinformatics/btw840
Protein multiple sequence alignment benchmarking through secondary structure predictionCited by: 27
Author(s): Quan Le, Fabian Sievers, Desmond G. Higgins
Software Mentions: 3
Published: almost 8 years ago
10.21203/rs.3.rs-80345/v1
SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomesCited by: 6
Author(s): Irwin Jungreis, Rachel Sealfon, M Kellis
Software Mentions: 2
Published: about 4 years ago
10.1534/g3.116.029207
Patching Holes in the <i>Chlamydomonas</i> GenomeCited by: 7
Author(s): Frej Tulin, Frederick R. Cross
Software Mentions: 2
Published: over 8 years ago
10.3390/genes12010111
Defining the Rhizobium leguminosarum Species ComplexCited by: 43
Author(s): J. Peter W. Young, Sara Moeskjær, Alexey М. Afonin, Praveen Rahi, Marta Maluk, Euan K. James, Maria Izabel A. Cavassim, M. Harun-or Rashid, Aregu Amsalu Aserse, Benjamin J. Perry, En Tao Wang, Encarna Velázquez, E. E. Andronov, Anastasia P. Tampakaki, José David Flores Félix, Raúl Rivas, Sameh H. Youseif, Marc Lepetit, Stéphane Boivin, Beatriz Jorrín, Gregory Kenicer, Álvaro Peix, Michael F. Hynes, Martha Helena Ramírez-Bahena, Arvind Gulati, Chang Fu Tian
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0216159
Individual knock out of glycine receptor alpha subunits identifies a specific requirement of glra1 for motor function in zebrafishCited by: 11
Author(s): Éric Samarut, Domitille Chalopin, Raphaëlle Riché, Marc W. Allard, Meijiang Liao, Pierre Drapeau
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms22168635
Conservative and Atypical Ferritins of SpongesCited by: 5
Author(s): Kim I. Adameyko, A. V. Burakov, Alexander D. Finoshin, Kirill V. Mikhailov, О. И. Кравчук, О. С. Козлова, Nicolay G. Gornostaev, Alexander Cherkasov, Pavel A. Erokhov, Maria I. Indeykina, А. Е. Бугрова, А. С. Кононихин, Andrey Moiseenko, Olga Sokolova, Artem Bonchuk, Irina V. Zhegalova, Anton Georgiev, Victor S. Mikhailov, Natalia Gogoleva, Guzel Gazizova, Elena Shagimardanova, Oleg Gusev, Yu. V. Lyupina
Software Mentions: 1
Published: over 3 years ago
10.12688/f1000research.10545.1
Annotated mitochondrial genome with Nanopore R9 signal for Nippostrongylus brasiliensisCited by: 14
Author(s): Jodie Chandler, Mali Camberis, Tiffany Bouchery, Mark Blaxter, Graham Le Gros, David Eccles
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2016.00616
Isolation of Oxamyl-degrading Bacteria and Identification of cehA as a Novel Oxamyl Hydrolase GeneCited by: 42
Author(s): Κωνσταντίνα Ρουσίδου, Eleni Chanika, Dafne Georgiadou, Eftychia Soueref, Demetra Katsarou, Panagiotis Kolovos, Spyridon Ntougias, Maria Tourna, Emmanuel A. Tzortzakakis, Dimitrios G. Karpouzas
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2021.656435
An Integrated Database of Small RNAs and Their Interplay With Transcriptional Gene Regulatory Networks in CorynebacteriaCited by: 2
Author(s): Mariana Teixeira Dornelles Parise, Doglas Parise, Flávia Figueira Aburjaile, Anne Cybelle Pinto Gomide, Rodrigo Bentes Kato, Martin Raden, Rolf Backofen, Vasco Azevedo, Jan Baumbach
Software Mentions: 1
Published: over 3 years ago
10.1038/srep32285
A toxin antitoxin system promotes the maintenance of the IncA/C-mobilizable Salmonella Genomic Island 1Cited by: 39
Author(s): Kévin Huguet, Mathieu Gonnet, Benoît Doublet, Axel Cloeckaert
Software Mentions: 1
Published: about 8 years ago
10.1128/mSystems.00085-19
Resistance Gene-Directed Genome Mining of 50 <i>Aspergillus</i> SpeciesCited by: 18
Author(s): Inge Kjærbølling, Tammi Camilla Vesth, Mikael Rørdam Andersen
Software Mentions: 1
Published: about 5 years ago