Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: clustalo

https://packages.ecosyste.ms/registries/pypi.org/packages/clustalo

Python wrapper around libclustalo
3 versions
Latest release: over 4 years ago
1,965 downloads last month

Papers Mentioning clustalo 19

10.1186/s13059-015-0688-z

Ultra-large alignments using phylogeny-aware profiles
Cited by: 109
Author(s): Nam Nguyen, Siavash Mirarab, Karthik Kumar, Tandy Warnow
Software Mentions: 7
Published: over 9 years ago

The amino‐terminal domain of Mycobacterium tuberculosis ClpB protein plays a crucial role in its substrate disaggregation activity
Cited by: 10
Author(s): Prajna Tripathi, Priyanka Parijat, Vaibhavi Patel, Janendra K. Batra
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-020-6495-2

Whole-genome sequencing of wild Siberian musk deer (Moschus moschiferus) provides insights into its genetic features
Cited by: 8
Author(s): Yang Li, Menggen Dalai, Rongguo Su, Weili Lin, Myagmarsuren Erdenedalai, Batkhuu Luvsantseren, Chimedragchaa Chimedtseren, Zhen Wang, Surong Hasi
Software Mentions: 5
Published: almost 5 years ago

10.3390/ani11030825

Insights into the Mitochondrial and Nuclear Genome Diversity of Two High Yielding Strains of Laying Hens
Cited by: 5
Author(s): Clara Dreyling, Vera Sommerfeld, Hanna Iffland, Jörn Bennewitz, M. Rodehutscord, Martin Hasselmann
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0228722

Iron metabolic pathways in the processes of sponge plasticity
Cited by: 8
Author(s): Alexander D. Finoshin, Kim I. Adameyko, Kirill V. Mikhailov, О. И. Кравчук, Anton Georgiev, Н. Г. Горностаев, Igor A. Kosevich, Victor S. Mikhailov, Guzel Gazizova, Elena Shagimardanova, Oleg Gusev, Yu. V. Lyupina
Software Mentions: 4
Published: over 4 years ago

10.1186/s12862-017-1001-4

Uncovering missing pieces: duplication and deletion history of arrestins in deuterostomes
Cited by: 38
Author(s): Henrike Indrischek, Sonja J. Prohaska, Vsevolod V. Gurevich, Eugenia V. Gurevich, Peter F. Stadler
Software Mentions: 3
Published: over 7 years ago

10.1093/gbe/evz023

PDZ Domains Across the Microbial World: Molecular Link to the Proteases, Stress Response, and Protein Synthesis
Cited by: 10
Author(s): Vijaykumar Yogesh Muley, Yusuf Akhter, Sanjeev Galande
Software Mentions: 3
Published: almost 6 years ago

10.1093/gbe/evw111

Host-Associated Genomic Features of the Novel Uncultured Intracellular PathogenCa.Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts
Cited by: 12
Author(s): Weihong Qi, Lloyd Vaughan, Pantelis Katharios, Ralph Schlapbach, Helena M. B. Seth-Smith
Software Mentions: 3
Published: over 8 years ago

10.1093/bioinformatics/btw840

Protein multiple sequence alignment benchmarking through secondary structure prediction
Cited by: 27
Author(s): Quan Le, Fabian Sievers, Desmond G. Higgins
Software Mentions: 3
Published: almost 8 years ago

10.21203/rs.3.rs-80345/v1

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes
Cited by: 6
Author(s): Irwin Jungreis, Rachel Sealfon, M Kellis
Software Mentions: 2
Published: about 4 years ago

10.1534/g3.116.029207

Patching Holes in the Chlamydomonas Genome
Cited by: 7
Author(s): Frej Tulin, Frederick R. Cross
Software Mentions: 2
Published: over 8 years ago

10.3390/genes12010111

Defining the Rhizobium leguminosarum Species Complex
Cited by: 43
Author(s): J. Peter W. Young, Sara Moeskjær, Alexey М. Afonin, Praveen Rahi, Marta Maluk, Euan K. James, Maria Izabel A. Cavassim, M. Harun-or Rashid, Aregu Amsalu Aserse, Benjamin J. Perry, En Tao Wang, Encarna Velázquez, E. E. Andronov, Anastasia P. Tampakaki, José David Flores Félix, Raúl Rivas, Sameh H. Youseif, Marc Lepetit, Stéphane Boivin, Beatriz Jorrín, Gregory Kenicer, Álvaro Peix, Michael F. Hynes, Martha Helena Ramírez-Bahena, Arvind Gulati, Chang Fu Tian
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0216159

Individual knock out of glycine receptor alpha subunits identifies a specific requirement of glra1 for motor function in zebrafish
Cited by: 11
Author(s): Éric Samarut, Domitille Chalopin, Raphaëlle Riché, Marc W. Allard, Meijiang Liao, Pierre Drapeau
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22168635

Conservative and Atypical Ferritins of Sponges
Cited by: 5
Author(s): Kim I. Adameyko, A. V. Burakov, Alexander D. Finoshin, Kirill V. Mikhailov, О. И. Кравчук, О. С. Козлова, Nicolay G. Gornostaev, Alexander Cherkasov, Pavel A. Erokhov, Maria I. Indeykina, А. Е. Бугрова, А. С. Кононихин, Andrey Moiseenko, Olga Sokolova, Artem Bonchuk, Irina V. Zhegalova, Anton Georgiev, Victor S. Mikhailov, Natalia Gogoleva, Guzel Gazizova, Elena Shagimardanova, Oleg Gusev, Yu. V. Lyupina
Software Mentions: 1
Published: about 3 years ago

10.12688/f1000research.10545.1

Annotated mitochondrial genome with Nanopore R9 signal for Nippostrongylus brasiliensis
Cited by: 14
Author(s): Jodie Chandler, Mali Camberis, Tiffany Bouchery, Mark Blaxter, Graham Le Gros, David Eccles
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2016.00616

Isolation of Oxamyl-degrading Bacteria and Identification of cehA as a Novel Oxamyl Hydrolase Gene
Cited by: 42
Author(s): Κωνσταντίνα Ρουσίδου, Eleni Chanika, Dafne Georgiadou, Eftychia Soueref, Demetra Katsarou, Panagiotis Kolovos, Spyridon Ntougias, Maria Tourna, Emmanuel A. Tzortzakakis, Dimitrios G. Karpouzas
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.656435

An Integrated Database of Small RNAs and Their Interplay With Transcriptional Gene Regulatory Networks in Corynebacteria
Cited by: 2
Author(s): Mariana Teixeira Dornelles Parise, Doglas Parise, Flávia Figueira Aburjaile, Anne Cybelle Pinto Gomide, Rodrigo Bentes Kato, Martin Raden, Rolf Backofen, Vasco Azevedo, Jan Baumbach
Software Mentions: 1
Published: over 3 years ago

10.1038/srep32285

A toxin antitoxin system promotes the maintenance of the IncA/C-mobilizable Salmonella Genomic Island 1
Cited by: 39
Author(s): Kévin Huguet, Mathieu Gonnet, Benoît Doublet, Axel Cloeckaert
Software Mentions: 1
Published: about 8 years ago

10.1128/mSystems.00085-19

Resistance Gene-Directed Genome Mining of 50 Aspergillus Species
Cited by: 18
Author(s): Inge Kjærbølling, Tammi Camilla Vesth, Mikael Rørdam Andersen
Software Mentions: 1
Published: about 5 years ago