Ecosyste.ms: Papers

10.1186/s12864-017-3570-4

Leaf transcriptome analysis of a subtropical evergreen broadleaf plant, wild oil-tea camellia (Camellia oleifera), revealing candidate genes for cold acclimation
Cited by: 41
Author(s): Jiaming Chen, Xiaoqiang Yang, Xiaomao Huang, Shi-Hua Duan, Chengnian Long, Jiakuan Chen, Jun Rong
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.59157

Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos
Cited by: 7
Author(s): Joshua F Coulcher, Agnès Roure, Rafath Chowdhury, Méryl Robert, Laury Lescat, Aurélie Bouin, Juliana Carvajal Cadavid, Hiroki Nishida, Sébastien Darras
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2164-10-295

Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napus
Cited by: 20
Author(s): Christian Obermeier, Bashir Hosseini, W. Friedt, Rod J. Snowdon
Software Mentions: 2
Published: almost 16 years ago

10.3390/ijms161025657

De Novo Sequencing and Analysis of the Safflower Transcriptome to Discover Putative Genes Associated with Safflor Yellow in Carthamus tinctorius L.
Cited by: 24
Author(s): Xiuming Liu, Yanjun Dong, Na Yao, Yu Zhang, Nan Wang, Xiyan Cui, Xiaowei Li, Yanfang Wang, Fawei Wang, Jing Yang, Lili Guan, Lina Du, Haiyan Li, Xiaokun Li
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2164-12-164

Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
Cited by: 130
Author(s): Brian R. Johnson, Neil D. Tsutsui
Software Mentions: 2
Published: over 13 years ago

10.3390/ijms18081734

Genome-Wide Organization and Expression Profiling of the SBP-Box Gene Family in Chinese Jujube (Ziziphus jujuba Mill.)
Cited by: 25
Author(s): Shuang Song, Heng Zhou, Songbai Sheng, Mengshu Cao, Yingyue Li, Xiaoming Pang
Software Mentions: 2
Published: over 7 years ago

10.3390/biology8030060

The Dynamics of the Cell Wall Proteome of Developing Alfalfa Stems
Cited by: 10
Author(s): Kjell Sergeant, Bruno Printz, Gea Guerriero, Jenny Renaut, Stanley Lutts, Jean-François Hausman
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-11-333

MPRAP: An accessibility predictor for a-helical transmem-brane proteins that performs well inside and outside the membrane
Cited by: 39
Author(s): Kristoffer Illergård, Simone Callegari, Arne Elofsson
Software Mentions: 2
Published: over 14 years ago

10.1186/s12864-014-1205-6

Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes
Cited by: 39
Author(s): Jan M. Meyer, Christian Rödelsperger, Karsten Eichholz, Urban Tillmann, Allan Cembella, Angela McGaughran, Uwe John
Software Mentions: 2
Published: almost 10 years ago

10.1111/pbi.12793

<scp>ABA</scp> signalling manipulation suppresses senescence of a leafy vegetable stored at room temperature
Cited by: 19
Author(s): Javier A. Miret, Sergi Munné‐Bosch, Paul P. Dijkwel
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20236034

Analysis of Centranthera grandiflora Benth Transcriptome Explores Genes of Catalpol, Acteoside and Azafrin Biosynthesis
Cited by: 16
Author(s): Xiaodong Zhang, Caixia Li, Lianchun Wang, Yahong Fei, Wensheng Qin
Software Mentions: 2
Published: almost 5 years ago

10.1002/pld3.38

Diurnal regulation of cyanogenic glucoside biosynthesis and endogenous turnover in cassava
Cited by: 25
Author(s): Frederik Bøgeskov Schmidt, Seok Keun Cho, Carl Erik Olsen, Seong Wook Yang, Birger Lindberg Møller, Kirsten Jørgensen
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21197141

The Hirudo Medicinalis Microbiome Is a Source of New Antimicrobial Peptides
Cited by: 10
Author(s): Ekaterina N. Grafskaia, Elizaveta R. Pavlova, Vladislav V. Babenko, Ivan A. Latsis, Maja V. Malakhova, Victoria N. Lavrenova, Pavel V. Bashkirov, Dmitrii M Belousov, Dmitry V. Klinov, В. Н. Лазарев
Software Mentions: 2
Published: about 4 years ago

10.1155/2016/7823429

VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
Cited by: 19
Author(s): Yiqing Xu, Changwei Bi, Guoxin Wu, Suyun Wei, Xiaogang Dai, Tongming Yin, Ning Ye
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2164-11-384

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
Cited by: 167
Author(s): Sheng Guo, Yi Zheng, Je‐Gun Joung, Shiqiang Liu, Zhonghua Zhang, Oswald Crasta, Bruno W. S. Sobral, Yong Xu, Sanwen Huang, Zhangjun Fei
Software Mentions: 2
Published: over 14 years ago

10.3390/ijms22062837

Transcriptional Regulatory Networks Associate with Early Stages of Potato Virus X Infection of Solanum tuberosum
Cited by: 5
Author(s): Venura Herath, Jeanmarie Verchot
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22084281

Catalase (CAT) Gene Family in Rapeseed (Brassica napus L.): Genome-Wide Analysis, Identification, and Expression Pattern in Response to Multiple Hormones and Abiotic Stress Conditions
Cited by: 66
Author(s): Ali Raza, Wei Su, Ang Gao, Sundas Saher Mehmood, Muhammad Hussain, Nie Wen-long, Yan Lv, Xiling Zou, Xuekun Zhang
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms221910300

Mitochondrial Genomes, Phylogenetic Associations, and SNP Recovery for the Key Invasive Ponto-Caspian Amphipods in Europe
Cited by: 8
Author(s): Tomasz Mamos, Michał Grabowski, Tomasz Rewicz, Jamie Bojko, Dominik Strapagiel, Artur Burzyński
Software Mentions: 2
Published: about 3 years ago

10.3390/plants9121665

Genome Survey Sequencing of In Vivo Mother Plant and In Vitro Plantlets of Mikania cordata
Cited by: 1
Author(s): Yongfeng Hong, Xia Huang, Chunmei Li, Xiaoxian Ruan, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 2
Published: almost 4 years ago

10.3390/plants10050991

Pan-Genome miRNomics in Brachypodium
Cited by: 2
Author(s): Tuğdem Muslu, Sezgi Biyiklioglu-Kaya, Bala Anı Akpınar, Meral Yüce, Hikmet Budak
Software Mentions: 2
Published: over 3 years ago

10.1186/s12974-016-0602-y

Reduction of cytosolic phospholipase A2α upregulation delays the onset of symptoms in SOD1G93A mouse model of amyotrophic lateral sclerosis
Cited by: 22
Author(s): Yulia Solomonov, Nurit Hadad, Rachel Lévy
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-12-S10-S17

Scenario driven data modelling: a method for integrating diverse sources of data and data streams
Cited by: 4
Author(s): Shelton D. Griffith, Daniel J. Quest, Thomas Brettin, Robert W. Cottingham
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pcbi.1000132

Protein Complex Evolution Does Not Involve Extensive Network Rewiring
Cited by: 51
Author(s): Teunis J. P. van Dam, Berend Snel
Software Mentions: 2
Published: over 16 years ago

10.1186/1750-1172-8-3

Haploinsufficiency of two histone modifier genes on 6p22.3, ATXN1 and JARID2, is associated with intellectual disability
Cited by: 18
Author(s): Tuva Barøy, Doriana Misceo, Petter Strømme, Asbjørg Stray-Pedersen, Asbjørn Holmgren, Olaug K. Rødningen, Anne Blomhoff, Johan Robert Helle, Alice Stormyr, Bjørn Tvedt, Madeleine Fannemel, Eirik Frengen
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12967-021-02882-7

The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing
Cited by: 29
Author(s): Wenli Zhou, Zhang De, Zhengpeng Li, Huiqing Jiang, Jingnan Li, Rongrong Ren, Xuefeng Gao, Jianfeng Li, Xin Wang, Weifeng Wang, Yunsheng Yang
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pgen.1000366

A Gene-Based Linkage Map for Bicyclus anynana Butterflies Allows for a Comprehensive Analysis of Synteny with the Lepidopteran Reference Genome
Cited by: 110
Author(s): Patrícia Beldade, Suzanne V Saenko, Nicolien Pul, Anthony D. Long
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pgen.1003122

Translation in Giant Viruses: A Unique Mixture of Bacterial and Eukaryotic Termination Schemes
Cited by: 24
Author(s): Sandra Jeudy, Chantal Abergel, Jean‐Michel Claverie, Matthieu Legendre
Software Mentions: 2
Published: almost 12 years ago

10.1111/jeb.12687

The<i>achaete</i>‐<i>scute</i>complex in Diptera: patterns of noncoding sequence evolution
Cited by: 8
Author(s): Bárbara Negre, Patricia Simpson
Software Mentions: 1
Published: about 9 years ago

10.1093/jxb/erv296

Developmentally regulated<i>HEART STOPPER</i>, a mitochondrially targeted L18 ribosomal protein gene, is required for cell division, differentiation, and seed development in<i>Arabidopsis</i>
Cited by: 16
Author(s): Hongyu Zhang, Ming Luo, Robert C. Day, Mark J. Talbot, Aneta Ivanova, Anthony R. Ashton, Abed Chaudhury, Richard C. Macknight, Mária Hrmová, Anna M. Koltunow
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erw244

Dual transcriptome analysis reveals insights into the response to<i>Rice black-streaked dwarf virus</i>in maize
Cited by: 39
Author(s): Yu Zhou, Zhennan Xu, Canxing Duan, Yanping Chen, Qingchang Meng, Juan Wu, Hao Zhang, Zhenhua Wang, Mingshun Li, Hongjun Yong, Degui Zhang, Shihuang Zhang, Jianfeng Weng, Xinhai Li
Software Mentions: 1
Published: over 8 years ago

10.1093/jxb/erw500

A novel inversion in the chloroplast genome of marama (Tylosema esculentum)
Cited by: 25
Author(s): Yunsoo Kim, Christopher A. Cullis
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.ppat.1000923

Analysis of Virion Structural Components Reveals Vestiges of the Ancestral Ichnovirus Genome
Cited by: 118
Author(s): Anne Nathalie Volkoff, Véronique Jouan, Serge Urbach, Sylvie Samain, Max Bergoin, Patrick Wincker, Edith Demettre, Clément François, Bertille Provost, F. Coulibaly, Fabrice Legeai, Catherine Béliveau, Michel Cusson, Gábor Gyapay, Jean‐Michel Drezen
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1001129

Crystal Structure of Legionella DotD: Insights into the Relationship between Type IVB and Type II/III Secretion Systems
Cited by: 47
Author(s): Nobuaki Nakano, Tomoko Kubori, Miki Kinoshita, Katsumi Imada, Hiroki Nagai
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.ppat.1004209

Fructose-Asparagine Is a Primary Nutrient during Growth of Salmonella in the Inflamed Intestine
Cited by: 59
Author(s): Mohamed M. Ali, David L. Newsom, Juan F. González, Anice Sabag-Daigle, Christopher C. Stahl, Brandi L. Steidley, Judith Dubena, Jessica L. Dyszel, Jenée N. Smith, Yakhya Dieye, Razvan Arsenescu, Prosper N. Boyaka, Steven Krakowka, Tony Romeo, E. J. Behrman, Peter White, Brian M. M. Ahmer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1008003

Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids
Cited by: 32
Author(s): Stephen Fitzgerald, Amy Elizabeth Beckett, Javier Palarea‐Albaladejo, Sean P. McAteer, Sharif Shaaban, Jason K. Morgan, Nur Indah Ahmad, Rachel Young, Neil A. Mabbott, Liam J. Morrison, James L. Bono, David L. Gally, Tom N. McNeilly
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009545

Origin and evolution of the zinc finger antiviral protein
Cited by: 24
Author(s): Daniel Gonçalves-Carneiro, Matthew A Takata, Heley Ong, Amanda Shilton, Paul D. Bieniasz
Software Mentions: 1
Published: over 3 years ago

10.1186/1477-5956-11-7

Proteins from Tuber magnatum Pico fruiting bodies naturally grown in different areas of Italy
Cited by: 11
Author(s): Federico Vita, Valentina Lucarotti, Emanuele Alpi, Raffaella Balestrini, Antonietta Mello, Ángela Bachi, Massimo Alessio, Amedeo Alpi
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12953-015-0077-2

Proteome analysis of shell matrix proteins in the brachiopod Laqueus rubellus
Cited by: 24
Author(s): Yukinobu Isowa, Isao Sarashina, Koichiro Oshima, Keiji Kito, Masahira Hattori, Kazuhiko Endo
Software Mentions: 1
Published: over 9 years ago

10.1098/rsos.171415

The muscle development transcriptome landscape of ovariectomized goat
Cited by: 12
Author(s): Sihuan Zhang, Han Xu, Xinfeng Liu, Qing Yang, Chuanying Pan, Chuzhao Lei, Ruihua Dang, Hong Chen, Xianyong Lan
Software Mentions: 1
Published: almost 7 years ago

10.1186/1477-7827-10-25

Involvement of Src family of kinases and cAMP phosphodiesterase in the luteinizing hormone/chorionic gonadotropin receptor-mediated signaling in the corpus luteum of monkey
Cited by: 15
Author(s): Shah B Kunal, Killivalavan Asaithambi, R. Medhamurthy
Software Mentions: 1
Published: over 12 years ago

10.1186/s12284-019-0326-6

Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice
Cited by: 25
Author(s): Atul Prakash Sathe, Xin Su, Zheng Chen, Ting Chen, Xiangjin Wei, Shaoqing Tang, Xiaobo Zhang, Jianli Wu
Software Mentions: 1
Published: about 5 years ago

10.1038/sdata.2016.115

Transcriptome characterisation and simple sequence repeat marker discovery in the seagrass Posidonia oceanica
Cited by: 11
Author(s): Daniela D’Esposito, Luigi Orrù, Emanuela Dattolo, Letizia Bernardo, Antonella Lamontanara, Luisa Orsini, Ilia Anna Serra, Silvia Mazzuca, Gabriele Procaccini
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41597-020-0408-8

Transcriptomic resources for evolutionary studies in flat periwinkles and related species
Cited by: 0
Author(s): João Pedro Marques, Graciela Sotelo, Juan Galindo, Pragya Chaube, Diana Costa, Sandra Afonso, Marina Panova, Katja Nowick, Roger K. Butlin, Johan Hollander, Rui Faria
Software Mentions: 1
Published: over 4 years ago

10.1038/s41597-020-00666-0

Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode
Cited by: 28
Author(s): Georgios Koutsovoulos, Marine Poullet, Abdelnaser Elashry, Djampa Kozlowski, Erika Sallet, Martine Da Rocha, Laetitia Perfus‐Barbeoch, Cristina Martín-Jimenez, Juerg E. Frey, Christian H. Ahrens, Sebastian Kiewnick, Étienne Danchin
Software Mentions: 1
Published: about 4 years ago

10.1038/srep09780

Local adaptation of Gymnocypris przewalskii (Cyprinidae) on the Tibetan Plateau
Cited by: 44
Author(s): Renyi Zhang, Arne Ludwig, Cunfang Zhang, Chao Tong, Guogang Li, Yongtao Tang, Zuogang Peng, Kai Zhao
Software Mentions: 1
Published: over 9 years ago

10.1038/srep11571

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts
Cited by: 49
Author(s): Guillaume Morel, Lieven Sterck, Dominique Swennen, Marina Marcet‐Houben, Djamila Onésime, Anthony Levasseur, Noémie Jacques, Sandrine Mallet, Arnaud Couloux, Karine Labadie, Joëlle Amselem, Jean-Marie Beckerich, Bernard Henrissat, Yves Van de Peer, Patrick Wincker, Jean-Luc Souciet, Toni Gabaldón, Colin R. Tinsley, Serge Casarégola
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12940

Splenic red pulp macrophages are intrinsically superparamagnetic and contaminate magnetic cell isolates
Cited by: 40
Author(s): Lars Franken, Marika Klein, Marina Spasova, Anna Elsukova, Ulf Wiedwald, Meike Welz, Percy A. Knolle, Michael Farle, Andreas Limmer, Christian Kurts
Software Mentions: 1
Published: over 9 years ago

10.1038/srep14835

Phylum-wide analysis of genes/proteins related to the last steps of assembly and export of extracellular polymeric substances (EPS) in cyanobacteria
Cited by: 67
Author(s): Sara B. Pereira, Rita Mota, Cristina Vieira, Jorge Vieira, Paula Tamagnini
Software Mentions: 1
Published: about 9 years ago

10.1038/srep16413

Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing
Cited by: 94
Author(s): Melissa C. Keinath, Vladimir A. Timoshevskiy, Nataliya Timoshevskaya, Panagiotis A. Tsonis, S. Randal Voss, Jeramiah J. Smith
Software Mentions: 1
Published: about 9 years ago

10.1038/srep16845

Proteome analysis of male accessory gland secretions in oriental fruit flies reveals juvenile hormone-binding protein, suggesting impact on female reproduction
Cited by: 17
Author(s): Dong Wei, Huimin Li, Chuan-Bei Tian, Guy Smagghe, Jia Fu, Hong‐Bo Jiang, Wei Dou, Jinjun Wang
Software Mentions: 1
Published: about 9 years ago

10.1038/srep17411

Spliced leader RNA trans-splicing discovered in copepods
Cited by: 8
Author(s): Feifei Yang, Donghui Xu, Yunyun Zhuang, Xiaoyan Yi, Yousong Huang, Hongju Chen, Senjie Lin, David A. Campbell, Nancy R. Sturm, Guangxing Liu, Huan Zhang
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep18919

A comprehensive characterization of simple sequence repeats in pepper genomes provides valuable resources for marker development in Capsicum
Cited by: 55
Author(s): Jimin Cheng, Zhonghua Zhao, Bo Li, Cheng Qin, Zhiming Wu, Diana Lilia Trejo-Saavedra, Xiao‐Dong Luo, Junjie Cui, R. F. Rivera-Bustamante, Shuai Cheng Li, Kailin Hu
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep19257

Mechanism of 2,3-butanediol stereoisomers formation in a newly isolated Serratia sp. T241
Cited by: 21
Author(s): Liaoyuan Zhang, Zewang Guo, Jiebo Chen, Quanming Xu, Hui Lin, Kaihui Hu, Xiong Guan, Yang Shen
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20135

Altered Carbohydrates Allocation by Associated Bacteria-fungi Interactions in a Bark Beetle-microbe Symbiosis
Cited by: 31
Author(s): Fangyuan Zhou, Qiaozhe Lou, Bó Wáng, Letian Xu, Chihang Cheng, Min Lü, Jianghua Sun
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21329

Comparative genomic and functional analysis reveal conservation of plant growth promoting traits in Paenibacillus polymyxa and its closely related species
Cited by: 95
Author(s): Jianbo Xie, Haowen Shi, Zhenglin Du, Tianshu Wang, Xiaomeng Liu, Sanfeng Chen
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep26930

Analysis of tigecycline resistance development in clinical Acinetobacter baumannii isolates through a combined genomic and transcriptomic approach
Cited by: 23
Author(s): Lin Liu, Yu‐Jun Cui, Beiwen Zheng, Saiping Jiang, Wei Yu, Ping Shen, Jinru Ji, Lanjuan Li, Nan Qin, Yonghong Xiao
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26934

Horizontal gene transfer events reshape the global landscape of arm race between viruses and homo sapiens
Cited by: 13
Author(s): Dongsheng Chen, Youmei Wu, Wei Zhang, Sanjie Jiang, Shan-Ze Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30412

Transcriptome Analysis Reveals Candidate Genes involved in Blister Blight defense in Tea (Camellia sinensis (L) Kuntze)
Cited by: 70
Author(s): Kuldip Jayaswall, Pallavi Mahajan, Gagandeep Singh, Rajni Parmar, Romit Seth, Aparnashree Raina, Mohit Kumar Swarnkar, Anil Kumar Singh, Ravi Shankar, Ram Kumar Sharma
Software Mentions: 1
Published: over 8 years ago

10.1038/srep33484

Identification of differentially expressed genes in Monochamus alternatus digested with azadirachtin
Cited by: 13
Author(s): Tong Lin, Qisi Liu, Jingxiang Chen
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34067

Characterization and Comparative Genomic Analyses of Pseudomonas aeruginosa Phage PaoP5: New Members Assigned to PAK_P1-like Viruses
Cited by: 21
Author(s): Mengyu Shen, Shuai Le, Xiaolin Jin, Gang Li, Yinling Tan, Ming Li, Xia Zhao, Wei Shen, Yuhui Yang, Jing Wang, Huajian Zhu, Shu Li, Xiancai Rao, Fuquan Hu, Shuguang Lu
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34826

Unique Features of Ethnic Mongolian Gut Microbiome revealed by metagenomic analysis
Cited by: 71
Author(s): Wenjun Liu, Jiachao Zhang, Chunyan Wu, Shunfeng Cai, Weiqiang Huang, Jing Chen, Xiaoxia Xi, Zebin Liang, Qiangchuan Hou, Bing Zhou, Nan Qin, Heping Zhang
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36064

Targeting Non-classical Myelin Epitopes to Treat Experimental Autoimmune Encephalomyelitis
Cited by: 10
Author(s): Xiaohua Wang, Jintao Zhang, David J. Baylink, Chih-Huang Li, Douglas M. Watts, Yi Xu, Xu‐Jie Qin, Michael H. Walter, Xiaolei Tang
Software Mentions: 1
Published: about 8 years ago

10.1038/srep43382

Comparative RNA-seq analysis of transcriptome dynamics during petal development in Rosa chinensis
Cited by: 41
Author(s): Yu Han, Huihua Wan, Tangren Cheng, Jia Wang, Weiru Yang, Huitang Pan, Qixiang Zhang
Software Mentions: 1
Published: over 7 years ago

10.1038/ismej.2016.34

A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus
Cited by: 42
Author(s): Sébastien Wielgoss, Xavier Didelot, Roy R. Chaudhuri, Xuan Li, Gareth D. Weedall, Gregory J. Velicer, Michiel Vos
Software Mentions: 1
Published: over 8 years ago

10.1038/s41396-020-00772-2

Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids
Cited by: 48
Author(s): Laura Villanueva, F. A. Bastiaan von Meijenfeldt, Alexander B. Westbye, Subhash Yadav, Ellen C. Hopmans, Bas E. Dutilh, Jaap S. Sinninghe Damsté
Software Mentions: 1
Published: about 4 years ago

10.1038/ismej.2017.148

Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere
Cited by: 49
Author(s): Özge Eyice, Nataliia Myronova, Arjan Pol, Ornella Carrión, Jonathan D. Todd, Thomas J. Smith, S. J. Gurman, Adam Cuthbertson, Sophie Mazard, Monique A. S. H. Mennink-Kersten, Timothy D. H. Bugg, K. Kristoffer Andersson, Andrew Johnston, Huub J. M. Op den Camp, Hendrik Schäfer
Software Mentions: 1
Published: about 7 years ago

10.1038/ismej.2014.190

Survival of Desulfotomaculum spores from estuarine sediments after serial autoclaving and high-temperature exposure
Cited by: 56
Author(s): Louise A. O’Sullivan, Erwan G. Roussel, Andrew J. Weightman, Gordon Webster, Claude Hubert, Emma Bell, Ian M. Head, Henrik Sass, Ronald John Parkes
Software Mentions: 1
Published: about 10 years ago

10.5402/2011/394678

The Fox and the Rabbits—Environmental Variables and Population Genetics (1) Replication Problems in Association Studies and the Untapped Power of GWAS (2) Vitamin A Deficiency, Herpes Simplex Reactivation and Other Causes of Alzheimer's Disease
Cited by: 7
Author(s): Christopher Carter
Software Mentions: 1
Published: over 13 years ago

10.1002/jev2.12123

LncRNA‐encoded microproteins: A new form of cargo in cell culture‐derived and circulating extracellular vesicles
Cited by: 24
Author(s): Tao Cai, Qing Zhang, Bowen Wu, Jifeng Wang, Na Li, Tingting Zhang, Zhipeng Wang, Jianjun Luo, Xiaojing Guo, Xiang Ding, Zenghong Xie, Lili Niu, Weihai Ning, Zhen Fan, Xiaowei Chen, Xiangqian Guo, Runsheng Chen, Hongwei Zhang, Fuquan Yang
Software Mentions: 1
Published: over 3 years ago

10.3390/jof6040370

Transcriptome Analysis Identified Coordinated Control of Key Pathways Regulating Cellular Physiology and Metabolism upon Aspergillus flavus Infection Resulting in Reduced Aflatoxin Production in Groundnut
Cited by: 11
Author(s): Pooja Soni, Spurthi N. Nayak, Rakesh Kumar, Manish K. Pandey, Namita Ashish Singh, H. Sudini, Prasad Bajaj, Jake C. Fountain, Prashant Singam, Yanbin Hong, Xiaoping Chen, Weijian Zhuang, Boshou Liao, Bao‐Zhu Guo, Rajeev K. Varshney
Software Mentions: 1
Published: almost 4 years ago

10.3390/jof7080632

Paecilomyces formosus MD12, a Biocontrol Agent to Treat Meloidogyne incognita on Brinjal in Green House
Cited by: 9
Author(s): Alaa Baazeem, Mohammed Alorabi, M. Palanisamy, Saqer S. Alotaibi, Abdulaziz Almanea, Ahmed Abdel-Hadi, Ponnuswamy Vijayaraghavan, Subhanandharaj Russalamma Flanet Raj, Young Ock Kim, Hak-Jae Kim
Software Mentions: 1
Published: over 3 years ago

10.1099/vir.0.066100-0

Excessive production and extreme editing of human metapneumovirus defective interfering RNA is associated with type I IFN induction
Cited by: 36
Author(s): Bernadette G. van den Hoogen, Sander van Boheemen, Jonneke de Rijck, Stefan van Nieuwkoop, Derek J. Smith, Brigitta M. Laksono, Alexander P. Gultyaev, Albert D. M. E. Osterhaus, Ron A. M. Fouchier
Software Mentions: 1
Published: over 10 years ago

10.1099/jgv.0.000869

Tree shrew, a potential animal model for hepatitis C, supports the infection and replication of HCV in vitro and in vivo
Cited by: 29
Author(s): Yue Feng, Yuemei Feng, Caixia Lü, Yuanyuan Han, Li Liu, Xiaomei Sun, Jiejie Dai, Xin Xia
Software Mentions: 1
Published: over 7 years ago

10.1099/jgv.0.001387

Analysis of genomic-length HBV sequences to determine genotype and subgenotype reference sequences
Cited by: 35
Author(s): Anna L McNaughton, Peter Revill, Margaret Littlejohn, Philippa C. Matthews, Azim Ansari
Software Mentions: 1
Published: over 4 years ago

10.1186/s43141-019-0004-5

GHRL gene-based genotyping of ovine and caprine breeds reveals highly polymorphic intronic sequences in Awassi sheep with several RNA motifs
Cited by: 12
Author(s): Mohammed Baqur S. Al‐Shuhaib, Mohammed Baqur S. Al‐Shuhaib, Israa Ali Fadhil, Thamer R. S. Aljubouri
Software Mentions: 1
Published: about 5 years ago

10.1155/2018/5716518

Transcriptome Comparison Reveals Distinct Selection Patterns in Domesticated and Wild Agave Species, the Important CAM Plants
Cited by: 26
Author(s): Huang Xing, Bo Wang, Jingen Xi, Yajie Zhang, Chunping He, Jianhua Zheng, Jianming Gao, Helong Chen, Shiqing Zhang, Weihuai Wu, Yanqiong Liang, Kexian Yi
Software Mentions: 1
Published: about 6 years ago

10.1155/2015/824287

Significant Microsynteny with New Evolutionary Highlights Is Detected through Comparative Genomic Sequence Analysis of Maize CCCH IX Gene Subfamily
Cited by: 3
Author(s): Weijun Chen, Yang Zhao, Xiaojian Peng, Qing Dong, Jing Jin, Wei Zhou, Beijiu Cheng, Qibin Ma
Software Mentions: 1
Published: almost 10 years ago

10.1155/2017/8614160

Enriching Genomic Resources and Marker Development from Transcript Sequences of<i>Jatropha curcas</i>for Microgravity Studies
Cited by: 8
Author(s): Wenlan Tian, Dev Paudel, Wagner A. Vendrame, Jianping Wang
Software Mentions: 1
Published: almost 8 years ago

10.1155/2015/782635

Analysis of<i>Polygala tenuifolia</i>Transcriptome and Description of Secondary Metabolite Biosynthetic Pathways by Illumina Sequencing
Cited by: 10
Author(s): Hua Tian, Xiaojun Xu, Fusheng Zhang, Yaoqin Wang, Song Guo, Xuemei Qin, Guanhua Du
Software Mentions: 1
Published: almost 10 years ago

10.1155/2019/8987436

Comparative Genomic Analysis of <i>Rhodococcus equi</i>: An Insight into Genomic Diversity and Genome Evolution
Cited by: 6
Author(s): Jianchao Ying, Jun Ye, Teng Xu, Qian Wang, Qiyu Bao, Aifang Li
Software Mentions: 1
Published: almost 5 years ago

10.1155/2013/857986

Identification of Cassava MicroRNAs under Abiotic Stress
Cited by: 41
Author(s): Carolina Ballén‐Taborda, Germán Plata, Sarah Ayling, Fausto Rodríguez-Zapata, Luís Augusto Becerra López-Lavalle, Jorge Duitama, Joseph M. Tohme
Software Mentions: 1
Published: almost 12 years ago

10.1155/2018/2368597

Molecular Characterization of Newcastle Disease Virus from Backyard Poultry Farms and Live Bird Markets in Kenya
Cited by: 15
Author(s): Irene Ogali, Lucy Wamuyu, Jacqueline Kasiiti Lichoti, Erick Ouma Mungube, Bernard Agwanda, Sheila Ommeh
Software Mentions: 1
Published: over 6 years ago

10.1099/ijsem.0.004804

Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil
Cited by: 11
Author(s): Dimitry Y. Sorokin, Tatjana V. Khijniak, Alicia P. Zakharycheva, Alexander G. Elcheninov, Richard L. Hahnke, Olga V. Boueva, Elena V. Ariskina, Boyke Bunk, Ilya V. Kublanov, Lyudmila I. Evtushenko
Software Mentions: 1
Published: over 3 years ago

10.1099/ijs.0.059600-0

Lactobacillus apinorum sp. nov., Lactobacillus mellifer sp. nov., Lactobacillus mellis sp. nov., Lactobacillus melliventris sp. nov., Lactobacillus kimbladii sp. nov., Lactobacillus helsingborgensis sp. nov. and Lactobacillus kullabergensis sp. nov., isolated from the honey stomach of the honeybee Apis mellifera
Cited by: 152
Author(s): Tobias Olofsson, Magnus Alsterfjord, Bo Nilson, E. I. Butler, Alejandra Vásquez
Software Mentions: 1
Published: about 10 years ago

10.1099/ijsem.0.004763

Motilimonas cestriensis sp. nov., isolated from an inland brine spring in Northern England
Cited by: 5
Author(s): Matthew Kelbrick, Raeid M. M. Abed, André Antunes
Software Mentions: 1
Published: over 5 years ago

10.1099/ijs.0.010249-0

Construction of an interactive online phytoplasma classification tool, iPhyClassifier, and its application in analysis of the peach X-disease phytoplasma group (16SrIII)
Cited by: 463
Author(s): Yan Zhao, Wei Wei, Ing‐Ming Lee, Jonathan Shao, Xiaobing Suo, Robert E. Davis
Software Mentions: 1
Published: over 15 years ago

10.1099/ijsem.0.004866

Mangrovivirga cuniculi gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family Mangrovivirgaceae fam. nov.
Cited by: 12
Author(s): Fatmah O. Sefrji, Grégoire Michoud, Ramona Marasco, Giuseppe Merlino, Daniele Daffonchio
Software Mentions: 1
Published: over 3 years ago

10.1099/ijsem.0.003935

Division of the genus Chryseobacterium: Observation of discontinuities in amino acid identity values, a possible consequence of major extinction events, guides transfer of nine species to the genus Epilithonimonas, eleven species to the genus Kaistella, and three species to the genus Halpernia gen. nov., with description of Kaistella daneshvariae sp. nov. and Epilithonimonas vandammei sp. nov. derived from clinical specimens
Cited by: 201
Author(s): Ainsley Nicholson, Christopher A. Gulvik, Anne M. Whitney, Ben W. Humrighouse, Melissa Bell, B. Holmes, A G Steigerwalt, Aaron Villarma, Mili Sheth, Dhwani Batra, Lori A. Rowe, Mark Burroughs, Jessica C Pryor, Jean‐François Bernardet, Celia J. Hugo, Peter Kämpfer, Jeffrey D. Newman, John R. McQuiston
Software Mentions: 1
Published: over 4 years ago

10.5812/ircmj.4024

Sequence Characterization of cDNA Sequence of Encoding of an Antimicrobial Peptide With No Disulfide Bridge from the Iranian Mesobuthus Eupeus Venomous Glands
Cited by: 5
Author(s): Ahmad Farajzadeh Sheikh, Abbas Jolodar, Shamsedin Ghaemmaghami
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijerph13030318

The Inflammation Response to DEHP through PPARγ in Endometrial Cells
Cited by: 18
Author(s): Qiansheng Huang, Huanteng Zhang, Yajie Chen, Yulang Chi, Shuang Dong
Software Mentions: 1
Published: over 8 years ago

10.3390/ijerph17020439

Diversity and Antimicrobial Activity of Culturable Fungal Endophytes in Solanum mauritianum
Cited by: 14
Author(s): Sharon Pauline Pelo, Vuyo Mavumengwana, Ezekiel Green
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijerph18115515

Characterization of a Lactiplantibacillus plantarum R23 Isolated from Arugula by Whole-Genome Sequencing and Its Bacteriocin Production Ability
Cited by: 16
Author(s): Joana Barbosa, Helena Albano, Beatríz Silva, Maria Helena Almeida, Teresa Nogueira, Paula Teixeira
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph18126275

Lack of Zika Virus and Other Recognized Flaviviruses among the Mosquito Vectors during and Post the Hajj Mass Gathering
Cited by: 1
Author(s): Saber Yezli, Muhammad Yasir, Yara Yassin, Afnan Almazrua, Tagreed L. Alsubhi, Norah A. Othman, Abdiasiis Omar, Abdelmohsin Mo Abdoon, Yousif Eldirdiry Elamin, Abuzaid Abuzaid, Turki Ghazi Bafaraj, Hassen Alzahrani, Sameer Almahmoodi, Hussam Alzahrani, Kingsley Bieh, B. M. Alotaibi, Anas Khan, Mohammed Alzahrani, Esam I. Azhar
Software Mentions: 1
Published: over 3 years ago

10.1099/jmmcr.0.005137

Ignavigranum ruoffiae, a rare pathogen that caused a skin abscess
Cited by: 2
Author(s): Adriana N. De Paulis, Eugenia Bertona, Miguel Gutiérrez, María Soledad Ramírez, Carlos Vay, Silvia C. Predari
Software Mentions: 1
Published: almost 7 years ago

10.1099/jmmcr.0.005136

First confirmed case of nasal pythiosis in a horse in Thailand
Cited by: 7
Author(s): Walaiporn Tonpitak, Watcharapol Pathomsakulwong, Chulabha Sornklien, Theerapong Krajaejun, Suppathat Wutthiwithayaphong
Software Mentions: 1
Published: almost 7 years ago

10.1099/jmmcr.0.004218

Case of Fonsecaea nubica chromoblastomycosis from the French territory of Mayotte
Cited by: 6
Author(s): Estelle Cateau, V. Cante, Dea Garcia Hermoso, Marie‐Hélène Rodier
Software Mentions: 1
Published: almost 10 years ago

10.1099/jmmcr.0.005149

Total nephrectomy following Corynebacterium coyleae urinary tract infection
Cited by: 5
Author(s): Claudia Barberis, Eduardo A. Montalvo, Soledad Imas, Germán Matías Traglia, Marisa Almuzara, Carlos Hernán Rodríguez, Ángela Famiglietti, Octavio Mazzocchi, Carlos Vay
Software Mentions: 1
Published: about 6 years ago

10.1099/jmmcr.0.005175

Post-traumatic endophthalmitis caused by Nocardia nova
Cited by: 8
Author(s): Jesús Rodríguez‐Lozano, Carlos Armiñanzas Castillo, Carlos Ruiz de Alegría Puig, Juan Antonio Ventosa Ayarza, María Carmen Fariñas, Jesús Agüero, Jorge Calvo
Software Mentions: 1
Published: almost 6 years ago

10.1673/031.010.11401

Construction and Application of an Electronic Spatiotemporal Expression Profile and Gene Ontology Analysis Platform Based on the EST Database of the Silkworm,Bombyx mori
Cited by: 4
Author(s): Li Gan, Wenyu Zhang, Yan-shan Niu, Lina Xu, Jian Xi, Ming-Ming Ji, Shiqiang Xu
Software Mentions: 1
Published: over 14 years ago

10.1673/031.007.1301

16thInternational Ecdysone Workshop: July 10–14, 2006, Ghent University, Belgium
Cited by: 3
Author(s): Organized by, Xavier Bellés, I. M. L. Billas, Peter Cherbas, Jean‐Paul Delbecque, Tarlochan S. Dhadialla, Haruchiko Fujiwara, Ronald J. Hill, Kiyoshi Hiruma, René Hermann, Kostas Iatrou, Jan Koolman, René Lafont, Jean‐Antoine Lepesant, Yoshiaki Nakagawa, Reddy Palli, Alexander S. Raikhel, Lynn M. Riddiford, Huw H. Rees, František Sehnal, Karl Slama, Guy Smagghe, Kluas-Dieter Spindler, C.G.H. Steel, Luc Swevers, Carl S. Thummel
Software Mentions: 1
Published: over 17 years ago