pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/s12870-018-1525-9

Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr
Cited by: 7
Author(s): Yi Gan, Yu Song, Yadong Chen, Hongbo Liu, Dongdong Yang, Qian-Yu XU, Zhifu Zheng
Software Mentions: 2
Published: almost 8 years ago

10.1111/1751-7915.13545

Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates
Cited by: 19
Author(s): Wladimir Mardones, Carlos A. Villarroel, Kristoffer Krogerus, Sebastián M. Tapia, Kamila Urbina, Christian I. Oporto, Samuel O’Donnell, Romain Minebois, Roberto F. Nespolo, Gilles Fischer, Amparo Querol, Brian Gibson, Francisco A. Cubillos
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.00557

Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasitica
Cited by: 5
Author(s): Franck Panabières, Corinne Rancurel, Martine Da Rocha, Marie-Line Kühn
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0208735

Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016
Cited by: 8
Author(s): Vaishnavi Pattabiraman, Lee S. Katz, Jessica C. Chen, Andre McCullough, Eija Trees
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-10-S6-S15

Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria
Cited by: 36
Author(s): Mónica Santamaría, Saverio Vicario, Graziano Pappadà, Gaetano Scioscia, Claudio Scazzocchio, Cecilia Saccone
Software Mentions: 2
Published: over 17 years ago

10.1186/1743-422X-2-60

HBx M130K and V131I (T-A) mutations in HBV genotype F during a follow-up study in chronic carriers
Cited by: 27
Author(s): Bernal León, Lizeth Taylor, M C Vargas, Ronald B. Luftig, Federico J. Albertazzi, Libia Herrero, Kirsten A. Visoná
Software Mentions: 2
Published: about 21 years ago

10.1099/mgen.0.000598

A global transcriptomic analysis of Staphylococcus aureus biofilm formation across diverse clonal lineages
Cited by: 16
Author(s): Brooke R Tomlinson, Morgan E Malof, Lindsey N. Shaw
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-13-221

Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses
Cited by: 46
Author(s): Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, Philippe Lecomte, Ingrid Mercier, Hélène Bergès, Caroline Pont, A. Blanco, Jérôme Salse
Software Mentions: 2
Published: over 14 years ago

10.3389/fimmu.2018.00013

Differing House Finch Cytokine Expression Responses to Original and Evolved Isolates of Mycoplasma gallisepticum
Cited by: 20
Author(s): Michal Vinkler, Ariel E Leon, Laila T. Kirkpatrick, Rami A. Dalloul, Dana M. Hawley
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-018-2452-3

PCRdrive: the largest qPCR assay archive to date and endless potential for lab workflow revitalization
Cited by: 0
Author(s): Florian Bürger, Michele Angioni, Gianluca Russo, Martina Schad, Jim Kallarackal
Software Mentions: 2
Published: almost 8 years ago

10.3389/fimmu.2021.646159

Development of Stable Chimeric IL-15 for Trans-Presentation by the Antigen Presenting Cells
Cited by: 3
Author(s): Manoj Patidar, Naveen Yadav, Sarat K. Dalai
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-019-1882-z

Ethylene-mediated improvement in sucrose accumulation in ripening sugarcane involves increased sink strength
Cited by: 33
Author(s): Zhongliang Chen, Cui-Xian Qin, Miao Wang, Fang Liao, Qing Liao, Xihui Liu, Yang‐Rui Li, Prakash Lakshmanan, M. I. E. Long, Dongliang Huang
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0000169

Vertebrate Vitellogenin Gene Duplication in Relation to the “3R Hypothesis”: Correlation to the Pelagic Egg and the Oceanic Radiation of Teleosts
Cited by: 181
Author(s): Roderick Nigel Finn, Børge André Kristoffersen
Software Mentions: 2
Published: over 19 years ago

10.1371/journal.pone.0167698

PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs)
Cited by: 52
Author(s): Gökhan Karakülah, Kuaybe Yücebilgili Kurtoğlu, Turgay Ünver
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0087624

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers
Cited by: 330
Author(s): Kenan Hadziavdic, Katrine Lekang, Anders Lanzén, Inge Jonassen, Eric M. Thompson, Christofer Troedsson
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2016.00797

Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile “Ferrovum”
Cited by: 36
Author(s): Sophie R. Ullrich, Carolina González, Anja Poehlein, Judith S. Tischler, Rolf Daniel, Michael Schlömann, David S. Holmes, Martin Mühling
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0179027

Transcriptome profiling analysis reveals the role of silique in controlling seed oil content in Brassica napus
Cited by: 7
Author(s): Ke-Lin Huang, Zhang Mei-li, Guangjing Ma, Huan Wu, Xiaoming Wu, Feng Ren, Xuebao Li
Software Mentions: 2
Published: over 9 years ago

10.3390/microorganisms8121880

Reconstructing Genomes of Carbon Monoxide Oxidisers in Volcanic Deposits Including Members of the Class Ktedonobacteria
Cited by: 8
Author(s): Marcela Hernández, Blanca Vera-Gargallo, Marcela Calabi-Floody, Gary M. King, Ralf Conrad, Christoph C. Tebbe
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2016.00875

DGV: Dengue Genographic Viewer
Cited by: 16
Author(s): Akifumi Yamashita, Tetsuya Sakamoto, Tsuyoshi Sekizuka, Kengo Kato, Tomohiko Takasaki, Makoto Kuroda
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-13-44

Grading amino acid properties increased accuracies of single point mutation on protein stability prediction
Cited by: 12
Author(s): Jianguo Liu, Xianjiang Kang
Software Mentions: 2
Published: over 14 years ago

10.1080/21505594.2017.1384895

Galleria mellonella as an infection model to investigate virulence of Vibrio parahaemolyticus
Cited by: 38
Author(s): Sariqa Wagley, Richard Borne, Jamie Harrison, Craig Baker‐Austin, Donatella Ottaviani, Francesca Leoni, Varaporn Vuddhakul, Richard W. Titball
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0056093

Rapid Focused Sequencing: A Multiplexed Assay for Simultaneous Detection and Strain Typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis
Cited by: 12
Author(s): Rosemary S. Turingan, Hans-Ulrich Thomann, Anna Zolotova, Eugene Tan, Richard F. Selden
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2229-14-99

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
Cited by: 204
Author(s): Nicola Vitulo, Claudio Forcato, Elisa Corteggiani Carpinelli, Andrea Telatin, Davide Campagna, Michela D’Angelo, Rosanna Zimbello, Massimiliano Corso, Alessandro Vannozzi, Claudio Bonghi, Margherita Lucchin, Giorgio Valle
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0099492

A 14.7 kDa Protein from Francisella tularensis subsp. novicida (Named FTN_1133), Involved in the Response to Oxidative Stress Induced by Organic Peroxides, Is Not Endowed with Thiol-Dependent Peroxidase Activity
Cited by: 7
Author(s): Diogo de Abreu Meireles, Thiago Gerônimo Pires Alegria, Simone Alves, Carla Rani Rocha Arantes, Luís Eduardo Soares Netto
Software Mentions: 2
Published: about 12 years ago

10.1080/21505594.2021.1878743

The transcription factor Ndt80 is a repressor of Candida parapsilosis virulence attributes
Cited by: 5
Author(s): Joana Branco, Cláudia Martins-Cruz, Lisa Rodrigues, Raquel M. Silva, Nuno Araújo‐Gomes, Teresa Gonçalves, Isabel M. Miranda, Acácio G. Rodrigues
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms7090322

Organs, Cultivars, Soil, and Fruit Properties Affect Structure of Endophytic Mycobiota of Pinggu Peach Trees
Cited by: 17
Author(s): Fei Ren, Wei Dong, Dong Yan
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0152147

Odorant Receptors of the New Zealand Endemic Leafroller Moth Species Planotortrix octo and P. excessana
Cited by: 14
Author(s): Bernd Steinwender, Amali H. Thrimawithana, Ross N. Crowhurst, Richard D. Newcomb
Software Mentions: 2
Published: over 10 years ago

10.1186/gb-2010-11-7-r71

Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays
Cited by: 54
Author(s): Adnane Sellam, Hervé Hogues, Christopher Askew, Faïza Tebbji, Marco van het Hoog, Hugo Lavoie, Carol A. Kumamoto, Malcolm Whiteway, André Nantel
Software Mentions: 1
Published: over 16 years ago

10.1186/gb-2011-12-11-r116

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine
Cited by: 333
Author(s): Peng Zheng, Yongliang Xia, Guohua Xiao, Chao Xiong, Xiao Hu, Siwei Zhang, Huajun Zheng, Yin Huang, Yan Zhou, Shengyue Wang, Guoping Zhao, Xingzhong Liu, Raymond J. St. Leger, Wang Chengshu
Software Mentions: 1
Published: over 15 years ago

10.1016/j.gpb.2018.12.003

Antibiotic Treatment Drives the Diversification of the Human Gut Resistome
Cited by: 51
Author(s): Jun Li, Elizabeth A. Rettedal, Eric van der Helm, Mostafa Mostafa Hashim Ellabaan, Gianni Panagiotou, Morten Otto Alexander Sommer
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/gix094

Draft genome of the gayal, Bos frontalis
Cited by: 19
Author(s): Mingshan Wang, Yan Zeng, Xiao Wang, Wei Nie, Jinhuan Wang, Wencheng Su, Newton O. Otecko, Zijun Xiong, Sheng Wang, Kaixing Qu, Shouqing Yan, Minmin Yang, Wen Wang, Yang Dong, Dongdong Wu, Yaping Zhang
Software Mentions: 1
Published: almost 9 years ago

10.5539/gjhs.v8n6p41

Lack of Association Between rs17568 Polymorphism in OX40 Gene and Myocardial Infarction, Southern of Iran
Cited by: 5
Author(s): Mehrnoosh Maalhagh, Mohammad Reza Shojaei, Saiedeh Erfanian, Abdolreza Sotoodeh Jahromi, Mohammad Sadegh Sanie, Ali Reza Yusefi, Hassan Zabetian, Hossein Hakimelahi, Abdoulhossain Madani, Mohammad Hojjat‐Farsangi
Software Mentions: 1
Published: almost 11 years ago

10.1186/1757-4749-3-9

Molecular basis of virulence in clinical isolates of Escherichia coli and Salmonella species from a tertiary hospital in the Eastern Cape, South Africa
Cited by: 69
Author(s): Mary A. Bisi-Johnson, Larry Chikwelu, Sandeep Vasaikar, Kamaldeen Baba, Toshio Hattori
Software Mentions: 1
Published: over 15 years ago

10.1186/s13099-017-0177-x

Capsular polysaccharide inhibits adhesion of Bifidobacterium longum 105-A to enterocyte-like Caco-2 cells and phagocytosis by macrophages
Cited by: 22
Author(s): Amin Tahoun, Hisayoshi Masutani, Hanem El-Sharkawy, Trudi Gillespie, Ryo Honda, Kazuo Kuwata, Mizuho Inagaki, Tomio Yabe, Izumi Nomura, Tomohiko Suzuki
Software Mentions: 1
Published: over 9 years ago

10.1016/j.heliyon.2021.e06780

Targeted metagenomics using next generation sequencing in laboratory diagnosis of culture negative endophthalmitis
Cited by: 9
Author(s): Deepika Mishra, Gita Satpathy, Rohan Chawla, Daizy Paliwal, Subrat Kumar Panda
Software Mentions: 1
Published: over 5 years ago

10.1038/s41438-021-00539-6

The chromosome-level Hemerocallis citrina Borani genome provides new insights into the rutin biosynthesis and the lack of colchicine
Cited by: 21
Author(s): Zhixing Qing, Jinghong Liu, Xiao Su Yi, Xiubin Liu, Guoqing Hu, Jia Lao, Wei He, Zihui Yang, Xiaoyan Zou, Mengshan Sun, Peng Huang, Jianguo Zeng
Software Mentions: 1
Published: over 5 years ago

10.1111/irv.12185

Genetic variability of human metapneumo- and bocaviruses in children with respiratory tract infections
Cited by: 10
Author(s): Vasiliki Pogka, Afroditi Moutousi, Athanasios Kossyvakis, Antonios Kalliaropoulos, Dionyssios N. Sgouras, Maria Giannaki, Αndreas Mentis
Software Mentions: 1
Published: almost 13 years ago

10.3390/insects11100680

Tracking the Distribution and Burst of Nuclear Mitochondrial DNA Sequences (NUMTs) in Fig Wasp Genomes
Cited by: 10
Author(s): Jianxia Wang, Jing Liu, Yun-Heng Miao, Dawei Huang, Jin‐Hua Xiao
Software Mentions: 1
Published: almost 6 years ago

10.1161/JAHA.112.002121

Molecular Mechanisms of Experimental Salt‐Sensitive Hypertension
Cited by: 15
Author(s): Bina Joe, Joseph I. Shapiro
Software Mentions: 1
Published: over 14 years ago

10.1186/s12929-014-0064-4

ADI1, a methionine salvage pathway enzyme, is required for Drosophila fecundity
Cited by: 13
Author(s): He Yen Chou, Yu Hung Lin, Guan Lin Shiu, Hsiang-Yu Tang, Mei Cheng, Ming‐Shi Shiao, Li‐Mei Pai
Software Mentions: 1
Published: about 12 years ago

10.1111/jcmm.13148

RNomic identification and evaluation of npcTB_6715, a non-protein-coding RNA gene as a potential biomarker for the detection ofMycobacterium tuberculosis
Cited by: 4
Author(s): Priyatharisni Kanniappan, Siti Aminah Ahmed, Ganeswrie Rajasekaram, Marimuthu Citartan, Ewe Seng Ch’ng, Li Pin Lee, Carsten A. Raabe, Timofey S. Rozhdestvensky, Thean‐Hock Tang
Software Mentions: 1
Published: about 9 years ago

10.1111/jcmm.16265

Long non‐coding RNA LINC00607 silencing exerts antioncogenic effects on thyroid cancer through the CASP9 Promoter methylation
Cited by: 9
Author(s): Lanzhen Li, Zhongcheng Gao, Lei Zhao, Peiyou Ren, Haoming Shen
Software Mentions: 1
Published: about 5 years ago

10.1111/jeb.12687

Theachaete‐scutecomplex in Diptera: patterns of noncoding sequence evolution
Cited by: 8
Author(s): Bárbara Negre, Patricia Simpson
Software Mentions: 1
Published: about 11 years ago

10.1093/jxb/erv296

Developmentally regulatedHEART STOPPER, a mitochondrially targeted L18 ribosomal protein gene, is required for cell division, differentiation, and seed development inArabidopsis
Cited by: 16
Author(s): Hongyu Zhang, Ming Luo, Robert C. Day, Mark J. Talbot, Aneta Ivanova, Anthony R. Ashton, Abed Chaudhury, Richard C. Macknight, Mária Hrmová, Anna M. Koltunow
Software Mentions: 1
Published: about 11 years ago

10.1093/jxb/erw244

Dual transcriptome analysis reveals insights into the response toRice black-streaked dwarf virusin maize
Cited by: 39
Author(s): Yu Zhou, Zhennan Xu, Canxing Duan, Yanping Chen, Qingchang Meng, Juan Wu, Hao Zhang, Zhenhua Wang, Mingshun Li, Hongjun Yong, Degui Zhang, Shihuang Zhang, Jianfeng Weng, Xinhai Li
Software Mentions: 1
Published: about 10 years ago

10.1093/jxb/erw500

A novel inversion in the chloroplast genome of marama (Tylosema esculentum)
Cited by: 25
Author(s): Yunsoo Kim, Christopher A. Cullis
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1000923

Analysis of Virion Structural Components Reveals Vestiges of the Ancestral Ichnovirus Genome
Cited by: 118
Author(s): Anne Nathalie Volkoff, Véronique Jouan, Serge Urbach, Sylvie Samain, Max Bergoin, Patrick Wincker, Edith Demettre, Clément François, Bertille Provost, F. Coulibaly, Fabrice Legeai, Catherine Béliveau, Michel Cusson, Gábor Gyapay, Jean‐Michel Drezen
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1001129

Crystal Structure of Legionella DotD: Insights into the Relationship between Type IVB and Type II/III Secretion Systems
Cited by: 47
Author(s): Nobuaki Nakano, Tomoko Kubori, Miki Kinoshita, Katsumi Imada, Hiroki Nagai
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.ppat.1004209

Fructose-Asparagine Is a Primary Nutrient during Growth of Salmonella in the Inflamed Intestine
Cited by: 59
Author(s): Mohamed M. Ali, David L. Newsom, Juan F. González, Anice Sabag-Daigle, Christopher C. Stahl, Brandi L. Steidley, Judith Dubena, Jessica L. Dyszel, Jenée N. Smith, Yakhya Dieye, Razvan Arsenescu, Prosper N. Boyaka, Steven Krakowka, Tony Romeo, E. J. Behrman, Peter White, Brian M. M. Ahmer
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.ppat.1008003

Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids
Cited by: 32
Author(s): Stephen Fitzgerald, Amy Elizabeth Beckett, Javier Palarea‐Albaladejo, Sean P. McAteer, Sharif Shaaban, Jason K. Morgan, Nur Indah Ahmad, Rachel Young, Neil A. Mabbott, Liam J. Morrison, James L. Bono, David L. Gally, Tom N. McNeilly
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1009545

Origin and evolution of the zinc finger antiviral protein
Cited by: 24
Author(s): Daniel Gonçalves-Carneiro, Matthew A Takata, Heley Ong, Amanda Shilton, Paul D. Bieniasz
Software Mentions: 1
Published: over 5 years ago

10.1186/1477-5956-11-7

Proteins from Tuber magnatum Pico fruiting bodies naturally grown in different areas of Italy
Cited by: 11
Author(s): Federico Vita, Valentina Lucarotti, Emanuele Alpi, Raffaella Balestrini, Antonietta Mello, Ángela Bachi, Massimo Alessio, Amedeo Alpi
Software Mentions: 1
Published: over 13 years ago

10.1186/s12953-015-0077-2

Proteome analysis of shell matrix proteins in the brachiopod Laqueus rubellus
Cited by: 24
Author(s): Yukinobu Isowa, Isao Sarashina, Koichiro Oshima, Keiji Kito, Masahira Hattori, Kazuhiko Endo
Software Mentions: 1
Published: about 11 years ago

10.1098/rsos.171415

The muscle development transcriptome landscape of ovariectomized goat
Cited by: 12
Author(s): Sihuan Zhang, Han Xu, Xinfeng Liu, Qing Yang, Chuanying Pan, Chuzhao Lei, Ruihua Dang, Hong Chen, Xianyong Lan
Software Mentions: 1
Published: almost 9 years ago

10.1186/1477-7827-10-25

Involvement of Src family of kinases and cAMP phosphodiesterase in the luteinizing hormone/chorionic gonadotropin receptor-mediated signaling in the corpus luteum of monkey
Cited by: 15
Author(s): Shah B Kunal, Killivalavan Asaithambi, R. Medhamurthy
Software Mentions: 1
Published: over 14 years ago

10.1186/s12284-019-0326-6

Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice
Cited by: 25
Author(s): Atul Prakash Sathe, Xin Su, Zheng Chen, Ting Chen, Xiangjin Wei, Shaoqing Tang, Xiaobo Zhang, Jianli Wu
Software Mentions: 1
Published: about 7 years ago

10.1038/sdata.2016.115

Transcriptome characterisation and simple sequence repeat marker discovery in the seagrass Posidonia oceanica
Cited by: 11
Author(s): Daniela D’Esposito, Luigi Orrù, Emanuela Dattolo, Letizia Bernardo, Antonella Lamontanara, Luisa Orsini, Ilia Anna Serra, Silvia Mazzuca, Gabriele Procaccini
Software Mentions: 1
Published: over 9 years ago

10.1038/s41597-020-0408-8

Transcriptomic resources for evolutionary studies in flat periwinkles and related species
Cited by: 0
Author(s): João Pedro Marques, Graciela Sotelo, Juan Galindo, Pragya Chaube, Diana Costa, Sandra Afonso, Marina Panova, Katja Nowick, Roger K. Butlin, Johan Hollander, Rui Faria
Software Mentions: 1
Published: over 6 years ago

10.1038/s41597-020-00666-0

Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode
Cited by: 28
Author(s): Georgios Koutsovoulos, Marine Poullet, Abdelnaser Elashry, Djampa Kozlowski, Erika Sallet, Martine Da Rocha, Laetitia Perfus‐Barbeoch, Cristina Martín-Jimenez, Juerg E. Frey, Christian H. Ahrens, Sebastian Kiewnick, Étienne Danchin
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep09780

Local adaptation of Gymnocypris przewalskii (Cyprinidae) on the Tibetan Plateau
Cited by: 44
Author(s): Renyi Zhang, Arne Ludwig, Cunfang Zhang, Chao Tong, Guogang Li, Yongtao Tang, Zuogang Peng, Kai Zhao
Software Mentions: 1
Published: over 11 years ago

10.1038/srep11571

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts
Cited by: 49
Author(s): Guillaume Morel, Lieven Sterck, Dominique Swennen, Marina Marcet‐Houben, Djamila Onésime, Anthony Levasseur, Noémie Jacques, Sandrine Mallet, Arnaud Couloux, Karine Labadie, Joëlle Amselem, Jean-Marie Beckerich, Bernard Henrissat, Yves Van de Peer, Patrick Wincker, Jean-Luc Souciet, Toni Gabaldón, Colin R. Tinsley, Serge Casarégola
Software Mentions: 1
Published: about 11 years ago

10.1038/srep12940

Splenic red pulp macrophages are intrinsically superparamagnetic and contaminate magnetic cell isolates
Cited by: 40
Author(s): Lars Franken, Marika Klein, Marina Spasova, Anna Elsukova, Ulf Wiedwald, Meike Welz, Percy A. Knolle, Michael Farle, Andreas Limmer, Christian Kurts
Software Mentions: 1
Published: about 11 years ago

10.1038/srep14835

Phylum-wide analysis of genes/proteins related to the last steps of assembly and export of extracellular polymeric substances (EPS) in cyanobacteria
Cited by: 67
Author(s): Sara B. Pereira, Rita Mota, Cristina Vieira, Jorge Vieira, Paula Tamagnini
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep16413

Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing
Cited by: 94
Author(s): Melissa C. Keinath, Vladimir A. Timoshevskiy, Nataliya Timoshevskaya, Panagiotis A. Tsonis, S. Randal Voss, Jeramiah J. Smith
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep16845

Proteome analysis of male accessory gland secretions in oriental fruit flies reveals juvenile hormone-binding protein, suggesting impact on female reproduction
Cited by: 17
Author(s): Dong Wei, Huimin Li, Chuan-Bei Tian, Guy Smagghe, Jia Fu, Hong‐Bo Jiang, Wei Dou, Jinjun Wang
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep17411

Spliced leader RNA trans-splicing discovered in copepods
Cited by: 8
Author(s): Feifei Yang, Donghui Xu, Yunyun Zhuang, Xiaoyan Yi, Yousong Huang, Hongju Chen, Senjie Lin, David A. Campbell, Nancy R. Sturm, Guangxing Liu, Huan Zhang
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep18919

A comprehensive characterization of simple sequence repeats in pepper genomes provides valuable resources for marker development in Capsicum
Cited by: 55
Author(s): Jimin Cheng, Zhonghua Zhao, Bo Li, Cheng Qin, Zhiming Wu, Diana Lilia Trejo-Saavedra, Xiao‐Dong Luo, Junjie Cui, R. F. Rivera-Bustamante, Shuai Cheng Li, Kailin Hu
Software Mentions: 1
Published: over 10 years ago

10.1038/srep19257

Mechanism of 2,3-butanediol stereoisomers formation in a newly isolated Serratia sp. T241
Cited by: 21
Author(s): Liaoyuan Zhang, Zewang Guo, Jiebo Chen, Quanming Xu, Hui Lin, Kaihui Hu, Xiong Guan, Yang Shen
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20135

Altered Carbohydrates Allocation by Associated Bacteria-fungi Interactions in a Bark Beetle-microbe Symbiosis
Cited by: 31
Author(s): Fangyuan Zhou, Qiaozhe Lou, Bó Wáng, Letian Xu, Chihang Cheng, Min Lü, Jianghua Sun
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21329

Comparative genomic and functional analysis reveal conservation of plant growth promoting traits in Paenibacillus polymyxa and its closely related species
Cited by: 95
Author(s): Jianbo Xie, Haowen Shi, Zhenglin Du, Tianshu Wang, Xiaomeng Liu, Sanfeng Chen
Software Mentions: 1
Published: over 10 years ago

10.1038/srep26930

Analysis of tigecycline resistance development in clinical Acinetobacter baumannii isolates through a combined genomic and transcriptomic approach
Cited by: 23
Author(s): Lin Liu, Yu‐Jun Cui, Beiwen Zheng, Saiping Jiang, Wei Yu, Ping Shen, Jinru Ji, Lanjuan Li, Nan Qin, Yonghong Xiao
Software Mentions: 1
Published: over 10 years ago

10.1038/srep26934

Horizontal gene transfer events reshape the global landscape of arm race between viruses and homo sapiens
Cited by: 13
Author(s): Dongsheng Chen, Youmei Wu, Wei Zhang, Sanjie Jiang, Shan-Ze Chen
Software Mentions: 1
Published: over 10 years ago

10.1038/srep30412

Transcriptome Analysis Reveals Candidate Genes involved in Blister Blight defense in Tea (Camellia sinensis (L) Kuntze)
Cited by: 70
Author(s): Kuldip Jayaswall, Pallavi Mahajan, Gagandeep Singh, Rajni Parmar, Romit Seth, Aparnashree Raina, Mohit Kumar Swarnkar, Anil Kumar Singh, Ravi Shankar, Ram Kumar Sharma
Software Mentions: 1
Published: about 10 years ago

10.1038/srep33484

Identification of differentially expressed genes in Monochamus alternatus digested with azadirachtin
Cited by: 13
Author(s): Tong Lin, Qisi Liu, Jingxiang Chen
Software Mentions: 1
Published: about 10 years ago

10.1038/srep34067

Characterization and Comparative Genomic Analyses of Pseudomonas aeruginosa Phage PaoP5: New Members Assigned to PAK_P1-like Viruses
Cited by: 21
Author(s): Mengyu Shen, Shuai Le, Xiaolin Jin, Gang Li, Yinling Tan, Ming Li, Xia Zhao, Wei Shen, Yuhui Yang, Jing Wang, Huajian Zhu, Shu Li, Xiancai Rao, Fuquan Hu, Shuguang Lu
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep34826

Unique Features of Ethnic Mongolian Gut Microbiome revealed by metagenomic analysis
Cited by: 71
Author(s): Wenjun Liu, Jiachao Zhang, Chunyan Wu, Shunfeng Cai, Weiqiang Huang, Jing Chen, Xiaoxia Xi, Zebin Liang, Qiangchuan Hou, Bing Zhou, Nan Qin, Heping Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36064

Targeting Non-classical Myelin Epitopes to Treat Experimental Autoimmune Encephalomyelitis
Cited by: 10
Author(s): Xiaohua Wang, Jintao Zhang, David J. Baylink, Chih-Huang Li, Douglas M. Watts, Yi Xu, Xu‐Jie Qin, Michael H. Walter, Xiaolei Tang
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep43382

Comparative RNA-seq analysis of transcriptome dynamics during petal development in Rosa chinensis
Cited by: 41
Author(s): Yu Han, Huihua Wan, Tangren Cheng, Jia Wang, Weiru Yang, Huitang Pan, Qixiang Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45188

Transcriptome analysis of molecular mechanisms responsible for light-stress response in Mythimna separata (Walker)
Cited by: 24
Author(s): Yun Duan, Zhong-Jun Gong, Wu RenHai, Miao Jin, Yi Jiang, Tong Li, Xiaobo Wu, Yuqing Wu
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00067-1

Novel protein acetyltransferase, Rv2170, modulates carbon and energy metabolism in Mycobacterium tuberculosis
Cited by: 15
Author(s): Wonsik Lee, Brian C. VanderVen, Suzanne Walker, David G. Russell
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01220-6

Transcriptome analysis on the exoskeleton formation in early developmetal stages and reconstruction scenario in growth-moulting in Litopenaeus vannamei
Cited by: 30
Author(s): Yi Gao, Jiankai Wei, Jianbo Yuan, Xiaojun Zhang, Fuhua Li, Jianhai Xiang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01383-2

Comparative transcriptome analysis of venom glands from Cotesia vestalis and Diadromus collaris, two endoparasitoids of the host Plutella xylostella
Cited by: 16
Author(s): Wei Zhao, Min Shi, Xi-qian Ye, Fĕi Li, Xiaowei Wang, Xue‐Xin Chen
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01608-4

The mitochondrial genomes of the acoelomorph worms Paratomella rubra, Isodiametra pulchra and Archaphanostoma ylvae
Cited by: 21
Author(s): Helen E. Robertson, François Lapraz, Bernhard Egger, Maximilian J. Telford, Philipp H. Schiffer
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-03557-4

MatureP: prediction of secreted proteins with exclusive information from their mature regions
Cited by: 31
Author(s): Georgia Orfanoudaki, Maria Markaki, Katerina Chatzi, Ioannis Tsamardinos, Anastassios Economou
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-04094-w

Multiple introns in a deep-sea Annelid (Decemunciger: Ampharetidae) mitochondrial genome
Cited by: 18
Author(s): Ângelo F. Bernardino, Yuanning Li, Craig R. Smith, Kenneth M. Halanych
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04879-z

Comparative transcriptome analysis on the synthesis pathway of honey bee (Apis mellifera) mandibular gland secretions
Cited by: 32
Author(s): Yuqi Wu, Huoqing Zheng, Miguel Corona, Christian Walter Werner Pirk, Fei Meng, Yi Zheng, Fuliang Hu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-06806-8

Full-length cloning, sequence analysis and expression detection of the β-tubulin gene from the Chinese gall aphid (Schlechtendalia chinensis)
Cited by: 0
Author(s): Ping Liu, Zixiang Yang, Xiaoming Chen, Hang Chen
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-08362-7

Genomic regions and genes related to inter-population differences in body size in the ground beetle Carabus japonicus
Cited by: 4
Author(s): Ryohei Komurai, Tomochika Fujisawa, Yutaka Okuzaki, Teiji Sota
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-07740-5

Elucidation of the molecular responses to waterlogging in Sesbania cannabina roots by transcriptome profiling
Cited by: 26
Author(s): Changliang Ren, Kong Chen, Yan Ke, Hua Zhang, Yongming Luo, Zhihong Xie
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-10388-w

Multiple origins of endosymbionts in Chlorellaceae with no reductive effects on the plastid or mitochondrial genomes
Cited by: 14
Author(s): Weishu Fan, Wenhu Guo, James L. Van Etten, Jeffrey P. Mower
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-12713-9

Transcriptome analysis of Spodoptera frugiperda Sf9 cells reveals putative apoptosis-related genes and a preliminary apoptosis mechanism induced by azadirachtin
Cited by: 23
Author(s): Benshui Shu, Jingjing Zhang, Sethuraman Veeran, Gaofeng Cui, Xin Yi, Guohua Zhong
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-16435-w

Isolation and functional identification of three cuticle protein genes during metamorphosis of the beet armyworm, Spodoptera exigua
Cited by: 15
Author(s): Saad Jan, Sisi Liu, Muhammad Hafeez, Xiangmei Zhang, Farman Ullah Dawar, Jian Guo, Chao Gao, Mo Wang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17269-2

Quantitative trait loci mapping for feed conversion efficiency in crucian carp (Carassius auratus)
Cited by: 18
Author(s): Maolin Pang, Bishi Fu, Xin Yu, Haiyang Liu, Xinhua Wang, Zhan Yin, Shouqi Xie, Jingou Tong
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17953-3

PiT2 regulates neuronal outgrowth through interaction with microtubule-associated protein 1B
Cited by: 11
Author(s): Xixiang Ma, Xiangyang Li, Ping Yi, Cheng Wang, Jun Weng, Li Zhang, Xuan Xu, Hao Sun, Shenglei Feng, Kai Li, Rui Chen, Shiyue Du, Xiao Mao, Xiaomei Zeng, Luo-Ying Zhang, Mugen Liu, Beisha Tang, Xuemei Zhu, Jin Shan, Jingyu Liu
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-18937-z

Human complement receptor type 1 (CR1) protein levels and genetic variants in chronic Chagas Disease
Cited by: 9
Author(s): Thaisa Lucas Sandri, Kárita Cláudia Freitas Lidani, Fabiana Antunes Andrade, Christian G. Meyer, Peter G. Kremsner, Iara José de Messias-Reason, Thirumalaisamy P. Velavan
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21598-1

Transcriptome changes induced by abiotic stresses in Artemisia annua
Cited by: 30
Author(s): Divya Vashisth, Ritesh Kumar, Shantanu Rastogi, Vikas Patel, Alok Kalra, Madan M. Gupta, Anil Kumar Gupta, Ajit Kumar Shasany
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21919-4

Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207
Cited by: 28
Author(s): Zarrin Basharat, Azra Yasmin, Tao He, Yigang Tong
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-22235-7

Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum
Cited by: 15
Author(s): Duarte Gouveia, François Bonneton, Christine Almunia, Jean Armengaud, H. Quéau, Davide Degli-Esposti, Olivier Geffard, Arnaud Chaumot
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-24674-8

Heterologous DNA prime-protein boost immunization with RecA and FliD offers cross-clade protection against leptospiral infection
Cited by: 12
Author(s): Raja Veerapandian, Sankaran Sobana, Charles Solomon Akino Mercy, Bianca Cotto, Durlav Prasad Bora, Kalimuthusamy Natarajaseenivasan
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-25071-x

Whole genome sequencing in the search for genes associated with the control of SIV infection in the Mauritian macaque model
Cited by: 4
Author(s): Marc de Manuel, Takashi Shiina, Shingo Suzuki, Nathalie Dereuddre‐Bosquet, Henri‐Jean Garchon, Masayuki Tanaka, Nicolas Congy-Jolivet, Alice Aarnink, Roger Le Grand, Tomàs Marquès‐Bonet, Antoine Blancher
Software Mentions: 1
Published: over 8 years ago

Projects: pypi: blast

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Papers Mentioning blast 1,819