pypi: blast | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0012282

Identification and Characterization of an Unusual Class I Myosin Involved in Vesicle Traffic in Trypanosoma brucei
Cited by: 20
Author(s): Diana Spitznagel, John F. O’Rourke, Neal Leddy, Orla Hanrahan, Derek P. Nolan
Software Mentions: 2
Published: about 16 years ago

10.1099/jgv.0.000771

Genome sequence variation in the constricta strain dramatically alters the protein interaction and localization map of Potato yellow dwarf virus
Cited by: 16
Author(s): Chanyong Jang, Renyuan Wang, Joseph R. Wells, F. A. Ponce de León, Mark L. Farman, John Hammond, Michael M. Goodin
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0151863

DNA Methylation and Potential for Epigenetic Regulation in Pygospio elegans
Cited by: 9
Author(s): Jenni Kesäniemi, Liisa Heikkinen, K. Emily Knott
Software Mentions: 2
Published: over 10 years ago

10.1099/jgv.0.001315

Discovery of two highly divergent negative-sense RNA viruses associated with the parasitic nematode, Capillaria hepatica, in wild Mus musculus from New York City
Cited by: 14
Author(s): Simon H. Williams, Xiaoyu Che, Alexandra Oleynik, Joel A. Garcia, Dorothy R. Muller, Tanja S. Zabka, Cadhla Firth, Robert M. Corrigan, Thomas Briese, Komal Jain, W. Ian Lipkin
Software Mentions: 2
Published: almost 7 years ago

10.1111/mec.12162

Progressive genome‐wide introgression in agricultural Campylobacter coli
Cited by: 126
Author(s): Samuel K. Sheppard, Xavier Didelot, Keith A. Jolley, Aaron E. Darling, Ben Pascoe, Guillaume Méric, David J. Kelly, Alison J. Cody, Frances M. Colles, Norval James Colin Strachan, I.D. Ogden, Ken J. Forbes, Nigel P. French, Philip Carter, William G. Miller, Noel D. McCarthy, Robert J. Owen, Eva Litrup, Michael Egholm, Jason P. Affourtit, Stephen D. Bentley, Julian Parkhill, Martin C. J. Maiden, Daniel Falush
Software Mentions: 2
Published: over 13 years ago

10.1111/mec.15115

Phenotypic sexual dimorphism is associated with genomic signatures of resolved sexual conflict
Cited by: 27
Author(s): Alison E. Wright, Thea F Rogers, Matteo Fumagalli, Christopher R. Cooney, Judith E. Mank
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-017-3861-9

De novo transcriptome analysis shows differential expression of genes in salivary glands of edible bird’s nest producing swiftlets
Cited by: 7
Author(s): Qi Hao Looi, Hossein Amin, I. Aini, Muhammad Muhaymin Mohd Zuki, Abdul Rahman Omar
Software Mentions: 2
Published: about 9 years ago

10.1111/mec.14060

Adaptation of the pathogen, Pseudomonas syringae , during experimental evolution on a native vs. alternative host plant
Cited by: 13
Author(s): Sean Meaden, Britt Koskella
Software Mentions: 2
Published: over 9 years ago

10.1099/jgv.0.001607

Identification of protein interactions of grapevine fanleaf virus RNA-dependent RNA polymerase during infection of Nicotiana benthamiana by affinity purification and tandem mass spectrometry
Cited by: 2
Author(s): Larissa J. Osterbaan, Victoria Hoyle, Michelle Curtis, Stacy L. DeBlasio, Keith Rivera, Michelle Heck, Marc Fuchs
Software Mentions: 2
Published: over 5 years ago

10.3390/biom9040144

Host-Microbiome Synergistic Control on Sphingolipid Metabolism by Mechanotransduction in Model Arthritis
Cited by: 5
Author(s): Xiaoyuan Zhou, Valentina Devescovi, Yuanhua Liu, Jennifer E. Dent, Christine Nardini
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-021-08001-6

Revelation of candidate genes and molecular mechanism of reproductive seasonality in female rohu (Labeo rohita Ham.) by RNA sequencing
Cited by: 2
Author(s): Sarika Jaiswal, Samiran Nandi, Mir Asif Iquebal, Rahul Singh Jasrotia, Swagat Kumar Patra, Gayatri Mishra, Uday Kumar Udit, Dinesh Kumar Sahu, U. B. Angadi, Prem Kumar Meher, P. Routray, Jitendra Kumar Sundaray, Deepti Verma, Paramananda Das, P. Jayasankar, Anil Rai, Dinesh Kumar
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pgen.1003122

Translation in Giant Viruses: A Unique Mixture of Bacterial and Eukaryotic Termination Schemes
Cited by: 24
Author(s): Sandra Jeudy, Chantal Abergel, Jean‐Michel Claverie, Matthieu Legendre
Software Mentions: 2
Published: almost 14 years ago

10.1111/1751-7915.12316

A novel bacteriophage cocktail reduces and dispersesPseudomonas aeruginosabiofilms under static and flow conditions
Cited by: 75
Author(s): Diana R. Alves, Patricia Pérez Esteban, Witold Kot, Jessica Bean, Tom Arnot, Lars Hestbjerg Hansen, Mark C. Enright, A. Toby A. Jenkins
Software Mentions: 2
Published: about 11 years ago

10.1002/ece3.2028

Population genomics of local adaptation versus speciation in coral reef fishes ( Hypoplectrus spp, Serranidae)
Cited by: 31
Author(s): Sophie Picq, W. Owen McMillan, Oscar Puebla
Software Mentions: 2
Published: over 10 years ago

10.1002/ece3.5708

Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze River
Cited by: 9
Author(s): Fangyuan Cheng, Qian Wang, Pierpaolo Maisano Delser, Chenhong Li
Software Mentions: 2
Published: almost 7 years ago

10.1111/1755-0998.12626

Strategies for complete plastid genome sequencing
Cited by: 104
Author(s): Alex D. Twyford, Rob W. Ness
Software Mentions: 2
Published: almost 10 years ago

10.1007/s00284-014-0629-1

The Diversity of Bacteria Isolated from Antarctic Freshwater Reservoirs Possessing the Ability to Produce Polyhydroxyalkanoates
Cited by: 27
Author(s): Sławomir Ciesielski, Dorota Górniak, Justyna Możejko, Aleksander Świątecki, Jakub Grzesiak, Marek K. Zdanowski
Software Mentions: 2
Published: over 12 years ago

10.1080/22221751.2020.1773745

Genetic cluster analysis of SARS-CoV-2 and the identification of those responsible for the major outbreaks in various countries
Cited by: 45
Author(s): Xuemei Yang, Ning Dong, Edward Wai Chi Chan, Sheng Chen
Software Mentions: 2
Published: over 6 years ago

10.1080/22221751.2018.1563455

Detection of human parvovirus 4 DNA in the patients with acute encephalitis syndrome during seasonal outbreaks of the disease in Gorakhpur, India
Cited by: 6
Author(s): Vidya A. Arankalle, Navin Srivastava, K. P. Kushwaha, Agnibha Sen, Ashwini Y. Ramdasi, Priyanka Patel, Sumeet Kuthe, Bangari Haldipur, Gajanan N. Sakpal, Kavita S. Lole, Nilesh Ingle
Software Mentions: 2
Published: over 7 years ago

10.1111/1755-0998.13277

A powerful long metabarcoding method for the determination of complex diets from faecal analysis of the European pond turtle (Emys orbicularis, L. 1758)
Cited by: 3
Author(s): Charlotte Ducotterd, Julien Crovadore, François Lefort, Jean‐François Rubin, Sylvain Ursenbacher
Software Mentions: 2
Published: almost 6 years ago

10.1111/j.1462-2920.2010.02193.x

Ironing out the wrinkles in the rare biosphere through improved OTU clustering
Cited by: 1,150
Author(s): Susan M. Huse, David B. Mark Welch, Hilary G. Morrison, Mitchell L. Sogin
Software Mentions: 2
Published: about 16 years ago

10.1186/s12862-015-0423-0

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
Cited by: 304
Author(s): Stephen A. Smith, Michael J. Moore, Joseph W. Brown, Ya Yang
Software Mentions: 2
Published: about 11 years ago

10.1099/mgen.0.000196

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Cited by: 162
Author(s): Margaret M C Lam, Ryan R. Wick, Kelly L. Wyres, Claire L. Gorrie, Louise M. Judd, Adam Jenney, Sylvain Brisse, Kathryn E. Holt
Software Mentions: 2
Published: about 8 years ago

10.1016/j.csbj.2017.01.002

Deep Assessment of Genomic Diversity in Cassava for Herbicide Tolerance and Starch Biosynthesis
Cited by: 14
Author(s): Jorge Duitama, Lina Kafuri, Daniel Tello, Ana Marı́a Leiva, Bernhard J. Hofinger, Sneha Datta, Zaida Lentini, Ericson Aranzales, Bradley J. Till, Hernán Ceballos
Software Mentions: 2
Published: over 9 years ago

10.1186/s12866-017-1049-8

Trichoderma virens β-glucosidase I (BGLI) gene; expression in Saccharomyces cerevisiae including docking and molecular dynamics studies
Cited by: 10
Author(s): Gammadde Hewa Ishan Maduka Wickramasinghe, Samith Rathnayake, N.V. Chandrasekharan, Mahindagoda Siril Samantha Weerasinghe, Ravindra Lakshman Chundananda Wijesundera, W.S.S. Wijesundera
Software Mentions: 2
Published: about 9 years ago

10.1186/s12866-015-0615-1

Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads
Cited by: 21
Author(s): Vímac Nolla-Ardèvol, Miriam Peces, Marc Strous, Halina E. Tegetmeyer
Software Mentions: 2
Published: almost 11 years ago

10.3390/ijms21197141

The Hirudo Medicinalis Microbiome Is a Source of New Antimicrobial Peptides
Cited by: 10
Author(s): Ekaterina N. Grafskaia, Elizaveta R. Pavlova, Vladislav V. Babenko, Ivan A. Latsis, Maja V. Malakhova, Victoria N. Lavrenova, Pavel V. Bashkirov, Dmitrii M Belousov, Dmitry V. Klinov, В. Н. Лазарев
Software Mentions: 2
Published: almost 6 years ago

10.1111/j.1462-2920.2008.01667.x

The Cry48Aa-Cry49Aa binary toxin fromBacillus sphaericusexhibits highly restricted target specificity
Cited by: 37
Author(s): Gareth Wyn Jones, Margaret C. Wirth, R. G. Monnerat, Colin Berry
Software Mentions: 2
Published: about 18 years ago

10.1186/s12862-017-1007-y

Segmental duplications: evolution and impact among the current Lepidoptera genomes
Cited by: 11
Author(s): Qian Zhao, Dongna Ma, Liette Vasseur, Minsheng You
Software Mentions: 2
Published: about 9 years ago

10.1111/1462-2920.13036

Closing the gaps on the viral photosystem‐ <scp>I</scp> psa <scp>DCAB</scp> gene organization
Cited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: almost 11 years ago

10.1155/2019/3780245

Iterative Variable Gene Discovery from Whole Genome Sequencing with a Bootstrapped Multiresolution Algorithm
Cited by: 1
Author(s): David N. Olivieri, Francisco Gambón-Deza
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0182756

Multi-tissue RNA-seq and transcriptome characterisation of the spiny dogfish shark (Squalus acanthias) provides a molecular tool for biological research and reveals new genes involved in osmoregulation
Cited by: 20
Author(s): Andrés Chana-Muñoz, Agnieszka Jendroszek, Malene Sønnichsen, Rune Kristiansen, Jan K. Jensen, Peter A. Andreasen, Christian Berthou, Frank Panitz
Software Mentions: 2
Published: about 9 years ago

10.1099/mgen.0.000507

Cas9-targeted nanopore sequencing reveals epigenetic heterogeneity after de novo assembly of native full-length hepatitis B virus genomes
Cited by: 7
Author(s): Chloe D. Goldsmith, Damien Cohen, A. Dubois, María del Carmen Jiménez Martínez, Kilian Petitjean, Anne Corlu, Barbara Testoni, Héctor Hernandez-Vargas, Isabelle Chemin
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0117562

Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities
Cited by: 170
Author(s): Dominique A. Cowart, Miguel Pinheiro, Olivier Mouchel, Marion Maguer, Jacques Grall, Jacques Miné, Sophie Arnaud–Haond
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2229-8-56

Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta
Cited by: 17
Author(s): Kathrin Bolte, Oliver Kawach, Julia Prechtl, Nicole Gruenheit, Julius O. Nyalwidhe, Uwe G. Maier
Software Mentions: 2
Published: over 18 years ago

10.1186/s12870-014-0316-1

Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process
Cited by: 80
Author(s): Mehar Hasan Asif, Deepika Lakhwani, Sumya Pathak, Parul Gupta, Sumit K. Bag, Paras Nath, Prabodh Kumar Trivedi
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2017.01772

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Cited by: 21
Author(s): Sergio Triana, Hans de Cock, Robin A. Ohm, Giovanna Danies, Han A. B. Wösten, Silvia Restrepo, Andrés Fernando González Barrios, Adriana Celis
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2164-9-254

Exploiting orthologue diversity for systematic detection of gain-of-function phenotypes
Cited by: 5
Author(s): Marialuisa Martelli, Claudio Isella, Alessia Mira, Li‐Chen Fu, Daniela Cantarella, Enzo Medico
Software Mentions: 2
Published: over 18 years ago

10.3389/fmicb.2020.584589

Characterization of a Novel Acyl-ACP Δ9 Desaturase Gene Responsible for Palmitoleic Acid Accumulation in a Diatom Phaeodactylum tricornutum
Cited by: 7
Author(s): Baoling Liu, Yan Sun, Hang Wei, Xiaodan Wang, Jinai Xue, Ronghua Ma, Xiaoyun Jia, Runzhi Li
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0167698

PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs)
Cited by: 52
Author(s): Gökhan Karakülah, Kuaybe Yücebilgili Kurtoğlu, Turgay Ünver
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2020.601839

Identification of New Helicobacter pylori Subpopulations in Native Americans and Mestizos From Peru
Cited by: 6
Author(s): Andrés Julián Gutiérrez-Escobar, Billie Velapatiño, Víctor Borda, Charles S. Rabkin, Eduardo Tarazona‐Santos, Lilia Cabrera, Jaime Cok, Catherine C. Hooper, M Helena Jahuira Arias, Phabiola Herrera, Mehwish Noureen, Difei Wang, Judith Romero–Gallo, Bao Tran, Richard M. Peek, Douglas E. Berg, Robert H. Gilman, M. Constanza Camargo
Software Mentions: 2
Published: almost 6 years ago

10.1099/acmi.0.000103

First hybrid complete genome of Aeromonas veronii reveals chromosome-mediated novel structural variant mcr-3.30 from a human clinical sample
Cited by: 12
Author(s): Naveen Kumar Devanga Ragupathi, Dhiviya Prabaa Muthuirulandi Sethuvel, Shalini Anandan, Dhivya Murugan, Kalaiarasi Asokan, Ramya Gajaraj Neethi Mohan, Karthick Vasudevan, Thirumal Kumar D, George Priya Doss C, Balaji Veeraraghavan
Software Mentions: 2
Published: over 6 years ago

10.1007/s11032-015-0430-2

Orphan Crops Browser: a bridge between model and orphan crops
Cited by: 18
Author(s): Claire Lessa Alvim Kamei, Edouard Severing, Annemarie Dechesne, Heleen Furrer, O. Dolstra, Luisa M. Trindade
Software Mentions: 2
Published: over 10 years ago

10.1155/2021/2590665

Whole-Genome Duplication and Purifying Selection Contributes to the Functional Redundancy of Auxin Response Factor (ARF) Genes in Foxtail Millet (Setaria italica L.)
Cited by: 6
Author(s): Chun‐Xiang You, Bin Liu, Yujun Zhao, Wei Yu, Weina Si
Software Mentions: 2
Published: about 5 years ago

10.1186/s13100-015-0054-4

The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants
Cited by: 3
Author(s): Stefan Roffler, Fabrizio Menardo, Thomas Wicker
Software Mentions: 2
Published: almost 11 years ago

10.1264/jsme2.ME13104

Time-Resolved DNA Stable Isotope Probing Links Desulfobacterales- and Coriobacteriaceae-Related Bacteria to Anaerobic Degradation of Benzene under Methanogenic Conditions
Cited by: 39
Author(s): Midori Noguchi, Futoshi Kurisu, Ikuro Kasuga, Hiroaki Furumai
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0087624

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers
Cited by: 330
Author(s): Kenan Hadziavdic, Katrine Lekang, Anders Lanzén, Inge Jonassen, Eric M. Thompson, Christofer Troedsson
Software Mentions: 2
Published: over 12 years ago

10.1186/s12870-019-1908-6

Time-series transcriptome provides insights into the gene regulation network involved in the volatile terpenoid metabolism during the flower development of lavender
Cited by: 32
Author(s): Hui Li, Jingrui Li, Yanmei Dong, Haiping Hao, Zhengyi Ling, Hongtong Bai, Huafang Wang, Hongxia Cui, Lei Shi
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2016.00639

Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion
Cited by: 27
Author(s): Joshua T. Cooper, Geoffrey A. Sinclair, Boris Wawrik
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-13-334

Protein interface classification by evolutionary analysis
Cited by: 126
Author(s): José M. Duarte, Adam Srebniak, Martin A. Schärer, Guido Capitani
Software Mentions: 2
Published: almost 14 years ago

10.3389/fmicb.2020.00947

Molecular Characterization and Comparative Genomic Analysis of vB_PaeP_YA3, a Novel Temperate Bacteriophage of Pseudomonas aeruginosa
Cited by: 5
Author(s): Xinyan Yu, Jianping Xu, Yu Gu, Ruiyang Zhang, Yefei Zhu, Xiaoqiu Liu
Software Mentions: 2
Published: over 6 years ago

10.1111/j.1365-2958.2007.05785.x

An atypical receiver domain controls the dynamic polar localization of the Myxococcus xanthus social motility protein FrzS
Cited by: 32
Author(s): James S. Fraser, John P. Merlie, Nathaniel Echols, Shellie R. Weisfield, Tâm Mignot, David E. Wemmer, David R. Zusman, Tom Alber
Software Mentions: 2
Published: over 19 years ago

10.1099/mgen.0.000497

Intraspecies plasmid and genomic variation of Mycobacterium kubicae revealed by the complete genome sequences of two clinical isolates
Cited by: 7
Author(s): Jo Hendrix, L. Elaine Epperson, David Durbin, Jennifer R. Honda, Michael Strong
Software Mentions: 2
Published: over 5 years ago

10.1111/j.1365-2958.2007.05978.x

Identification of differentially expressed small non‐coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics
Cited by: 102
Author(s): Coral del Val, Elena Rivas, Omar Torres‐Quesada, Nicolás Toro, Josè I. Jiménez-Zurdo
Software Mentions: 2
Published: almost 19 years ago

10.1099/ijsem.0.004806

Kaustia mangrovi gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed Parvibaculaceae family within the order Rhizobiales
Cited by: 12
Author(s): Fatmah O. Sefrji, Ramona Marasco, Grégoire Michoud, Kholoud Seferji, Giuseppe Merlino, Daniele Daffonchio
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-020-01763-1

Protein–protein interaction of Rv0148 with Htdy and its predicted role towards drug resistance in Mycobacterium tuberculosis
Cited by: 3
Author(s): Gunapati Bhargavi, Sameer Hassan, S. Balaji, Srikanth Tripathy, Kannan Palaniyandi
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-13-621

Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major
Cited by: 37
Author(s): Vijayendran Gowri, Indira Ghosh, Amit Sharma, Rentala Madhubala
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0134738

Draft De Novo Transcriptome of the Rat Kangaroo Potorous tridactylus as a Tool for Cell Biology
Cited by: 18
Author(s): Dylan B. Udy, Mark Voorhies, Patricia P. Chan, Todd M. Lowe, Sophie Dumont
Software Mentions: 2
Published: about 11 years ago

10.3390/ijms22062837

Transcriptional Regulatory Networks Associate with Early Stages of Potato Virus X Infection of Solanum tuberosum
Cited by: 5
Author(s): Venura Herath, Jeanmarie Verchot
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-021-03024-3

Genome-wide identification and functional analysis of U-box E3 ubiquitin ligases gene family related to drought stress response in Chinese white pear (Pyrus bretschneideri)
Cited by: 18
Author(s): Chunmeng Wang, Bobo Song, Yuqin Dai, Shaoling Zhang, Xiaosan Huang
Software Mentions: 2
Published: over 5 years ago

10.3390/antiox10030378

Nitrosative Redox Homeostasis and Antioxidant Response Defense in Disused Vastus lateralis Muscle in Long-Term Bedrest (Toulouse Cocktail Study)
Cited by: 7
Author(s): Dieter Blottner, Daniele Capitanio, Gabor Trautmann, Sandra Furlan, Guido Gambara, Manuela Moriggi, Katharina Block, Pietro Barbacini, Enrica Torretta, Guillaume Py, Angèle Chopard, Imre Vida, Pompeo Volpe, Cecilia Gelfi, Michele Salanova
Software Mentions: 2
Published: over 5 years ago

10.1111/j.1365-2958.2007.05753.x

Gene encoding a deubiquitinating enzyme is mutated in artesunate‐ and chloroquine‐resistant rodent malaria parasites§
Cited by: 152
Author(s): Paul Hunt, Ana Afonso, Alison M. Creasey, Richard Culleton, Amar Bir Singh Sidhu, John G. Logan, Stephanie G. Valderramos, I.W. McNae, Sandra Cheesman, Virgı́lio do Rosário, Richard Carter, David A. Fidock, Pedro Vitor Lemos Cravo
Software Mentions: 2
Published: over 19 years ago

10.1371/journal.pgen.1002187

Adaptations to Endosymbiosis in a Cnidarian-Dinoflagellate Association: Differential Gene Expression and Specific Gene Duplications
Cited by: 92
Author(s): Philippe Ganot, Aurélie Moya, Virginie Magnone, Denis Allemand, Paola Furla, Cécile Sabourault
Software Mentions: 2
Published: about 15 years ago

10.3389/fmicb.2015.01044

Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function
Cited by: 22
Author(s): William P. Inskeep, Zackary J. Jay, Richard E. Macur, Scott Clingenpeel, Aaron Tenney, David Lovalvo, Jacob P. Beam, Mark A. Kozubal, Wayne C. Shanks, Lisa A. Morgan, Jinjun Kan, Yuri A. Gorby, Shibu Yooseph, Kenneth H. Nealson
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0101673

Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus
Cited by: 159
Author(s): Harsh Raman, Rosy Raman, Andrzej Kilian, Frank Detering, Jason Carling, Neil Coombes, Simon Diffey, Gururaj Kadkol, David Edwards, M. E. McCully, Pradeep Ruperao, Isobel A. P. Parkin, Jacqueline Batley, David J. Luckett, Neil Wratten
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2018.00423

Halotolerant Exiguobacterium profundum PHM11 Tolerate Salinity by Accumulating L-Proline and Fine-Tuning Gene Expression Profiles of Related Metabolic Pathways
Cited by: 21
Author(s): Vikas Patel, R. P. Srivastava, Anjney Sharma, Anchal Srivastava, Surinder Singh, Alok Kumar Srivastava, Prem Lal Kashyap, Hillol Chakdar, Kurinji Pandiyan, Alok Kalra, Anil Kumar Saxena
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-016-3266-1

Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii
Cited by: 31
Author(s): Yan Zhu, Longxian Chen, Chengjun Zhang, Pei Hao, Xinyun Jing, Xuan Li
Software Mentions: 2
Published: over 9 years ago

10.1080/23802359.2018.1522982

Complete mitogenome of the biocontroller fungus Purpureocillium sp. (Ascomycota, Ophiocordycipitaceae, Hypocreales)
Cited by: 2
Author(s): Nadya Lorena Cardona, Nicolás D. Franco‐Sierra, Javier Correa Álvarez
Software Mentions: 2
Published: about 8 years ago

10.1186/1748-7188-8-14

LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search
Cited by: 15
Author(s): Sebastian Will, Michael Siebauer, Steffen Heyne, Jan Engelhardt, Peter F. Stadler, Kristin Reiche, Rolf Backofen
Software Mentions: 2
Published: over 13 years ago

10.1186/s12864-015-1737-4

Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress
Cited by: 22
Author(s): Valeria Wallace-Salinas, Daniel P. Brink, Dag Ahrén, Marie-Françoise Gorwa-Grauslund
Software Mentions: 2
Published: about 11 years ago

10.1080/23802359.2020.1861558

Characteristics of complete chloroplast genome of a high-quality forage on Qinghai-Tibet Plateau, Medicago archiducis-nicolai Sirj. (Fabaceae：Trifolieae)
Cited by: 2
Author(s): Jun Xie, Chengbo Liang, Zongren Li, Zhongke Ji, Weiyou Ou, Lun Hua, Haichun Wang, Kazhuocairang, Zhiqiang Hou
Software Mentions: 2
Published: over 5 years ago

10.3389/fneur.2018.00465

Environmental Enrichment Upregulates Striatal Synaptic Vesicle-Associated Proteins and Improves Motor Function
Cited by: 6
Author(s): Suk Young Song, Minji Chae, Ji Hea Yu, Min Young Lee, Soonil Pyo, Yeseul Shin, Ahreum Baek, Jung Won Park, Eun Sook Park, Ja Young Choi, Sung Rae Cho
Software Mentions: 2
Published: about 8 years ago

10.1080/23802359.2021.1944386

The complete chloroplast genome of Codonopsis convolvulacea subsp. vinciflora
Cited by: 0
Author(s): Yangzom Pema, Chao Ma
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0069476

The Complete Mitochondrial Genome of Gossypium hirsutum and Evolutionary Analysis of Higher Plant Mitochondrial Genomes
Cited by: 43
Author(s): Guozheng Liu, Dandan Cao, Shuangshuang Li, Aiguo Su, Jianing Geng, Corrinne E. Grover, Songnian Hu, Jinping Hua
Software Mentions: 2
Published: about 13 years ago

10.1080/23802359.2021.1911712

Diversity and authentication of Rubus accessions revealed by complete plastid genome and rDNA sequences
Cited by: 4
Author(s): Young Sang Park, Jee Young Park, Jae-Mo Kang, Wan Hee Lee, Tae-Jin Yang
Software Mentions: 2
Published: over 5 years ago

10.1111/mpp.12346

Identification of pathogenicity‐related genes in Fusarium oxysporum f. sp. cepae
Cited by: 91
Author(s): Andrew Taylor, Viktória Vágány, Alison C. Jackson, Richard J. Harrison, Alessandro Rainoni, John P. Clarkson
Software Mentions: 2
Published: over 10 years ago

10.1186/s12870-017-0983-9

Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s
Cited by: 47
Author(s): LI Xu-yan, Xin Xie, Ji Li, Yuhai Cui, Yanming Hou, Lulu Zhai, Xiao Wang, Yanli Fu, Ranran Liu, Shaomin Bian
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-12-283

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing
Cited by: 64
Author(s): Anna W. Santure, Jacob Gratten, Jim A. Mossman, Ben C. Sheldon, Jon Slate
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0103160

Characterization of Hepatitis C Virus Genotypes by Direct Sequencing of HCV 5′UTR Region of Isolates from Saudi Arabia
Cited by: 13
Author(s): Medhat K. Shier, Mohammad S. El-Wetidy, Hebatallah H. Ali, Mohammad M. Al‐Qattan
Software Mentions: 2
Published: about 12 years ago

10.1186/s12866-018-1304-7

Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing
Cited by: 57
Author(s): Morgane Mailhe, Davide Ricaboni, Véronique Vitton, Jean-Michel González, Dipankar Bachar, Grégory Dubourg, F. Cadoret, Caroline Robert, Jérémy Delerce, Anthony Levasseur, Pierre‐Edouard Fournier, Emmanouil Angelakis, Jean-Christophe Lagier, Didier Raoult
Software Mentions: 2
Published: almost 8 years ago

10.3389/fphys.2016.00096

Characterization of a Digestive α-Amylase in the Midgut of Pieris brassicae L. (Lepidoptera: Pieridae)
Cited by: 12
Author(s): Ali Sharifloo, Arash Zibaee, Jalal Jalali Sendi, Khalil Talebi Jahroumi
Software Mentions: 2
Published: over 10 years ago

10.3389/fphys.2020.00417

Transcriptome Analysis of Ophraella communa Male Reproductive Tract in Indirect Response to Elevated CO2 and Heat Wave
Cited by: 2
Author(s): Xuyuan Gao, Zhonghuan Tian, Yan Zhang, Guangmei Chen, Chunzi Ma, Shaowei Cui, Yongyue Lu, Zhongshi Zhou
Software Mentions: 2
Published: over 6 years ago

10.15252/msb.202110302

Spurious regulatory connections dictate the expression‐fitness landscape of translation factors
Cited by: 6
Author(s): Jean-Benoît Lalanne, Darren J. Parker, Gene-Wei Li
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22084281

Catalase (CAT) Gene Family in Rapeseed (Brassica napus L.): Genome-Wide Analysis, Identification, and Expression Pattern in Response to Multiple Hormones and Abiotic Stress Conditions
Cited by: 66
Author(s): Ali Raza, Wei Su, Ang Gao, Sundas Saher Mehmood, Muhammad Hussain, Nie Wen-long, Yan Lv, Xiling Zou, Xuekun Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2017.00594

De novo Sequencing and Transcriptome Analysis Reveal Key Genes Regulating Steroid Metabolism in Leaves, Roots, Adventitious Roots and Calli of Periploca sepium Bunge
Cited by: 7
Author(s): Jian Zhang, Xinglin Li, Fuping Lu, Shan-Ying Wang, Yunhe An, Xiaoxing Su, Xiankuan Li, Lin Ma, Han Guang-jian
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-15-1022

Genome-wide mapping of matrix attachment regions in Drosophila melanogaster
Cited by: 27
Author(s): Rashmi U. Pathak, Arumugam Srinivasan, Rakesh K. Mishra
Software Mentions: 2
Published: almost 12 years ago

10.3389/fpls.2021.712254

Identification and Characterization of Secondary Wall-Associated NAC Genes and Their Involvement in Hormonal Responses in Tobacco (Nicotiana tabacum)
Cited by: 5
Author(s): Na Xu, Lin Meng, Lin Song, Xiaoxu Li, Shanshan Du, Fengqin Hu, Yuanda Lv, Wenjing Song
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2014.00356

Unravelling the proteomic profile of rice meiocytes during early meiosis
Cited by: 22
Author(s): Melania Collado-Romero, Enriqueta Alós, Pilar Prieto
Software Mentions: 2
Published: about 12 years ago

10.3389/fpls.2017.01653

Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly
Cited by: 18
Author(s): H Busra Cagirici, Sezgi Biyiklioglu, Hikmet Budak
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2016.01374

Genomic Dissection and Expression Profiling Revealed Functional Divergence in Triticum aestivum Leucine Rich Repeat Receptor Like Kinases (TaLRRKs)
Cited by: 56
Author(s): . Shumayla, Shailesh Sharma, Rohit Kumar, Venugopal Mendu, Kashmir Singh, Santosh Kumar Upadhyay
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12870-021-02850-9

Reduced expression of a subunit gene of sucrose non-fermenting 1 related kinase, PpSnRK1βγ, confers flat fruit abortion in peach by regulating sugar and starch metabolism
Cited by: 1
Author(s): Jian Guo, Ke Cao, Jia‐Long Yao, Cecilia Deng, Yong Li, Guoqiang Zhu, Weichao Fang, Chang Wen Chen, Xinwei Wang, Jinlong Wu, Wen‐Wu Guo, Lirong Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.642631

Epigenetic Variability Among Saffron Crocus (Crocus sativus L.) Accessions Characterized by Different Phenotypes
Cited by: 13
Author(s): Matteo Busconi, Elisabeth Wischnitzki, Marcello Del Corvo, Licia Colli, Giovanna Soffritti, Lorenzo Stagnati, Silvia Fluch, Eva Maria Sehr, Marcelino de los Mozos Pascual, José Antonio Fernández
Software Mentions: 2
Published: over 5 years ago

10.1186/s12967-021-02882-7

The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing
Cited by: 29
Author(s): Wenli Zhou, Zhang De, Zhengpeng Li, Huiqing Jiang, Jingnan Li, Rongrong Ren, Xuefeng Gao, Jianfeng Li, Xin Wang, Weifeng Wang, Yunsheng Yang
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms221910300

Mitochondrial Genomes, Phylogenetic Associations, and SNP Recovery for the Key Invasive Ponto-Caspian Amphipods in Europe
Cited by: 8
Author(s): Tomasz Mamos, Michał Grabowski, Tomasz Rewicz, Jamie Bojko, Dominik Strapagiel, Artur Burzyński
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2021.714305

Insights Into the Molecular Evolution of AT-Hook Motif Nuclear Localization Genes in Brassica napus
Cited by: 7
Author(s): Weimeng Zhang, Dongdong Fang, Xiuzhu Cheng, Jun Cao, Xiao‐Li Tan
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2021.625520

De novo Transcriptome Assembly and Comparative Analysis Highlight the Primary Mechanism Regulating the Response to Selenium Stimuli in Oats (Avena sativa L.)
Cited by: 2
Author(s): Tao Liu, Xiaoting Liu, Rangrang Zhou, Hong Chen, Huaigang Zhang, Bo Zhang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0239605

Comparative transcriptome analysis reveals heat stress-responsive genes and their signalling pathways in lilies (Lilium longiflorum vs. Lilium distichum)
Cited by: 3
Author(s): Yongyao Fu, Liping Yang, Haihong Gao, Wei Xü, Qiang Li, LI Hong-qun, Jian Gao
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2164-8-409

Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula
Cited by: 27
Author(s): Dariusz Grzebelus, Sławomir Lasota, Tomasz Gambin, Grégory Kucherov, Anna Gambin
Software Mentions: 2
Published: over 19 years ago

10.1186/s12870-015-0636-9

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil
Cited by: 21
Author(s): Emmanuel González, Nicholas J. B. Brereton, Julie Marleau, Werther Guidi Nissim, Michel Labrecque, Frédéric E. Pitre, Simon Joly
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12870-018-1525-9

Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr
Cited by: 7
Author(s): Yi Gan, Yu Song, Yadong Chen, Hongbo Liu, Dongdong Yang, Qian-Yu XU, Zhifu Zheng
Software Mentions: 2
Published: almost 8 years ago

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