pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/1471-2164-14-769

CEG: a database of essential gene clusters
Cited by: 47
Author(s): Yuan-Nong Ye, Zhi-Gang Hua, Jian Huang, Nini Rao, Feng‐Biao Guo
Software Mentions: 2
Published: about 11 years ago

Genome-wide identification and analysis of B-BOX gene family in grapevine reveal its potential functions in berry development
Cited by: 40
Author(s): Hongru Wei, Peipei Wang, Jianqing Chen, Changjun Li, Yongzhang Wang, Yuan Yang, Jinggui Fang, Xiangpeng Leng
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-017-17132-4

Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota
Cited by: 63
Author(s): Ibrahim Hamad, Stéphane Ranque, Esam I. Azhar, Muhammad Yasir, Asif A. Jiman-Fatani, Hervé Tissot‐Dupont, Didier Raoult, Fadi Bittar
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12870-019-1785-z

Development and characterisation of interspecific hybrid lines with genome-wide introgressions from Triticum timopheevii in a hexaploid wheat background
Cited by: 21
Author(s): Uma Devi, Surbhi Grewal, Caiyun Yang, Stella Hubbart‐Edwards, Duncan Scholefield, Stephen Ashling, Amanda Burridge, Ian P. King, Julie King
Software Mentions: 2
Published: over 5 years ago

10.1007/s13199-014-0291-1

The diversity of endophytic fungi in the above-ground tissue of two Lycopodium species in Poland
Cited by: 23
Author(s): Julia Pawłowska, Mateusz Wilk, Anna Śliwińska–Wyrzychowska, Monika Mętrak, Marta Wrzosek
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0008636

Phylogenetic Analysis of Cellulolytic Enzyme Genes from Representative Lineages of Termites and a Related Cockroach
Cited by: 62
Author(s): Nemuri Todaka, Tsuneo Inoue, Kanako Saita, Moriya Ohkuma, Christine A. Nalepa, Michael Lenz, Toshiaki Kudo, Shigeharu Moriya
Software Mentions: 2
Published: almost 15 years ago

10.1186/s12864-015-1556-7

The AVRDC – The World Vegetable Center mungbean (Vigna radiata) core and mini core collections
Cited by: 89
Author(s): Roland Schafleitner, Ramakrishnan M. Nair, Abhishek Rathore, Yen wei Wang, Chen yu Lin, Shu hui Chu, Pin yun Lin, Jian Cheng Chang, Andreas W. Ebert
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0062865

Deep Sequencing Reveals Transcriptome Re-Programming of Taxus × media Cells to the Elicitation with Methyl Jasmonate
Cited by: 67
Author(s): Guiling Sun, Yongqiang Yang, Fuliang Xie, Jianfan Wen, Jianqiang Wu, Iain W. Wilson, Qi Tang, Hongwei Liu, Deyou Qiu
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-018-19820-1

Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system
Cited by: 24
Author(s): Maria I. Pratas, Bruno Aguiar, Jorge Vieira, Vanessa Nunes, Vanessa Teixeira, Nuno A. Fonseca, Amy Iezzoni, Steve van Nocker, Cristina Vieira
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-21614-4

A multitarget approach to drug discovery inhibiting Mycobacterium tuberculosis PyrG and PanK
Cited by: 33
Author(s): Laurent R. Chiarelli, Giorgia Mori, Béatrice Silvia Orena, Marta Esposito, Thomas R. Lane, Ana Luisa de Jesus Lopes Ribeiro, Giulia Degiacomi, Júlia Zemanová, Sára Szádocka, Stanislav Huszár, Zuzana Palčeková, Marcello Manfredi, Fabio Gosetti, Joël Lelièvre, Lluís Ballell, Elena Kazakova, Vadim Makarov, Emílio Marengo, Katarı́na Mikušová, Stewart T. Cole, Giovanna Riccardi, Sean Ekins, Maria Rosalia Pasca
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12862-016-0602-7

Evolutionary patterns of Toll-like receptor signaling pathway genes in the Suidae
Cited by: 5
Author(s): Kwame A. Darfour‐Oduro, Hendrik‐Jan Megens, Alfred L. Roca, Martien A. M. Groenen, Lawrence B. Schook
Software Mentions: 2
Published: almost 9 years ago

10.1186/1753-6561-3-S4-S14

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
Cited by: 11
Author(s): Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornshøj, Magali SanCristobal, Pierre Mormède, Dirk-Jan de Koning
Software Mentions: 2
Published: over 15 years ago

10.1186/s13071-019-3770-7

Whole-genome sequencing of ocular Chlamydia trachomatis isolates from Gadarif State, Sudan
Cited by: 9
Author(s): Abdulazeem Abdulsalam Ibrahim Alkhidir, Martin J. Holland, Wafa Ibrahim Elhag, Charlotte A. Williams, Judith Breuer, Abdah Elfatih Elemam, Khalid Mohamed Khalid El Hussain, Mohammed E. H. Ournasseir, Harry Pickering
Software Mentions: 2
Published: about 5 years ago

10.1111/1751-7915.12145

Colonization by endophytic <scp>O</scp>chrobactrum anthropi <scp>M</scp>n1 promotes growth of <scp>J</scp>erusalem artichoke
Cited by: 22
Author(s): Xianmin Meng, Dekai Yan, Xiaohua Long, Changhai Wang, Zhaopu Liu, Zed Rengel
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-018-24477-x

Analysis of microRNA reveals cleistogamous and chasmogamous floret divergence in dimorphic plant
Cited by: 10
Author(s): Fan Wu, Daiyu Zhang, Blaise Pascal Muvunyi, Yan Qi, Yufei Zhang, Yan Zhang, Mingshu Cao, Yanrong Wang, Jiyu Zhang
Software Mentions: 2
Published: over 6 years ago

10.1111/1751-7915.13365

The symbiotic bacteria Alcaligenes faecalis of the entomopathogenic nematodes Oscheius spp. exhibit potential biocontrol of plant‐ and entomopathogenic fungi
Cited by: 25
Author(s): Shaojie Shan, Wenwu Wang, Song Cui, Minggang Wang, Bingjiao Sun, Yang Li, Yaqi Fu, Xinghui Gu, Weibin Ruan, Sergio Rasmann
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-018-25044-0

Comparative analyses and structural insights of the novel cytochrome P450 fusion protein family CYP5619 in Oomycetes
Cited by: 4
Author(s): Hans Denis Bamal, Wanping Chen, Samson Sitheni Mashele, David R. Nelson, Abidemi Paul Kappo, Rebamang A. Mosa, Jae‐Hyuk Yu, Jack A. Tuszyński, Khajamohiddin Syed
Software Mentions: 2
Published: over 6 years ago

10.3390/antiox10030378

Nitrosative Redox Homeostasis and Antioxidant Response Defense in Disused Vastus lateralis Muscle in Long-Term Bedrest (Toulouse Cocktail Study)
Cited by: 7
Author(s): Dieter Blottner, Daniele Capitanio, Gabor Trautmann, Sandra Furlan, Guido Gambara, Manuela Moriggi, Katharina Block, Pietro Barbacini, Enrica Torretta, Guillaume Py, Angèle Chopard, Imre Vida, Pompeo Volpe, Cecilia Gelfi, Michele Salanova
Software Mentions: 2
Published: over 3 years ago

10.1186/1750-1172-8-3

Haploinsufficiency of two histone modifier genes on 6p22.3, ATXN1 and JARID2, is associated with intellectual disability
Cited by: 18
Author(s): Tuva Barøy, Doriana Misceo, Petter Strømme, Asbjørg Stray-Pedersen, Asbjørn Holmgren, Olaug K. Rødningen, Anne Blomhoff, Johan Robert Helle, Alice Stormyr, Bjørn Tvedt, Madeleine Fannemel, Eirik Frengen
Software Mentions: 2
Published: almost 12 years ago

10.1186/1471-2164-12-436

Analysis of high-identity segmental duplications in the grapevine genome
Cited by: 31
Author(s): Giuliana Giannuzzi, Pietro D’Addabbo, Marica Gasparro, M. Martinelli, Francesco Nicola Carelli, Donato Antonacci, Mario Ventura
Software Mentions: 2
Published: about 13 years ago

10.1111/1751-7915.12316

A novel bacteriophage cocktail reduces and dispersesPseudomonas aeruginosabiofilms under static and flow conditions
Cited by: 75
Author(s): Diana R. Alves, Patricia Pérez Esteban, Witold Kot, Jessica Bean, Tom Arnot, Lars Hestbjerg Hansen, Mark C. Enright, A. Toby A. Jenkins
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pgen.1000366

A Gene-Based Linkage Map for Bicyclus anynana Butterflies Allows for a Comprehensive Analysis of Synteny with the Lepidopteran Reference Genome
Cited by: 110
Author(s): Patrícia Beldade, Suzanne V Saenko, Nicolien Pul, Anthony D. Long
Software Mentions: 2
Published: almost 16 years ago

10.1186/s13104-015-1683-x

Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates
Cited by: 1
Author(s): Mbaye Tine
Software Mentions: 2
Published: almost 9 years ago

10.1007/s13205-014-0238-5

Diversified diazotrophs associated with the rhizosphere of Western Indian Himalayan native red kidney beans (Phaseolus vulgaris L.)
Cited by: 24
Author(s): Deep Chandra Suyal, Amit Yadav, Yogesh S. Shouche
Software Mentions: 2
Published: over 10 years ago

10.1186/1472-6807-7-10

Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
Cited by: 70
Author(s): D.J. Ferraro, Eric N. Brown, Chung Huang Yu, Rebecca E. Parales, David T. Gibson, S. Ramaswamy
Software Mentions: 2
Published: over 17 years ago

10.1111/1574-6941.12084

Microbial community potentially responsible for acid and metal release from an Ostrobothnian acid sulfate soil
Cited by: 30
Author(s): Xiaofen Wu, Zhen Lim Wong, Pekka Stén, Sten Engblom, Peter Österholm, Mark Dopson
Software Mentions: 2
Published: over 11 years ago

10.1111/1751-7915.13545

Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates
Cited by: 19
Author(s): Wladimir Mardones, Carlos A. Villarroel, Kristoffer Krogerus, Sebastián M. Tapia, Kamila Urbina, Christian I. Oporto, Samuel O’Donnell, Romain Minebois, Roberto F. Nespolo, Gilles Fischer, Amparo Querol, Brian Gibson, Francisco A. Cubillos
Software Mentions: 2
Published: over 4 years ago

10.1128/MRA.00253-20

Complete Genome Sequence of Novel Psychrotolerant Legionella Strain TUM19329, Isolated from Antarctic Lake Sediment
Cited by: 5
Author(s): Shunsuke Shimada, Ryosuke Nakai, Kotaro Aoki, Norifumi Shimoeda, Giichiro Ohno, Yasunari Miyazaki, Sakae Kudoh, Satoru Imura, Kouichi Watanabe, Yoshikazu Ishii, Kazuhiro Tateda
Software Mentions: 2
Published: over 4 years ago

10.1099/mic.0.045153-0

Introgression in the genus Campylobacter: generation and spread of mosaic alleles
Cited by: 45
Author(s): Samuel K. Sheppard, Noel D. McCarthy, Keith A. Jolley, Martin C. J. Maiden
Software Mentions: 2
Published: over 13 years ago

10.1002/2211-5463.12022

Analysis of nucleotide diphosphate sugar dehydrogenases reveals family and group‐specific relationships
Cited by: 4
Author(s): Nicholas Freas, Peter W. Newton, John Perozich
Software Mentions: 2
Published: almost 9 years ago

10.1002/fsn3.2153

Spectroscopic and in silico investigation of the interaction between GH1 β‐glucosidase and ginsenoside Rb 1
Cited by: 8
Author(s): Shuning Zhong, Yan Mi, Haifeng Zou, Ping Zhao, Haiqing Ye, Tiehua Zhang, Can Zhao
Software Mentions: 2
Published: almost 4 years ago

10.1002/fsn3.2468

Gastrointestinal transit tolerance, cell surface hydrophobicity, and functional attributes of Lactobacillus Acidophilus strains isolated from Indigenous Dahi
Cited by: 12
Author(s): Wajiha Farid, Tariq Masud, Aamir Sohail, Nazir Ahmad, Syed Muhammad Saqlan Naqvi, Sipper Khan, Amjad Ali, S. A. Khalifa, Abid Hussain, Sartaj Ali, Maryum Saghir, Azhari Siddeeg, Muhammad Faisal Manzoor
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2164-14-657

Targets of light signalling in Trichoderma reesei
Cited by: 67
Author(s): Doris Tisch, Monika Schmoll
Software Mentions: 2
Published: almost 12 years ago

10.1186/s40168-018-0512-6

Trichoderma polysporum selectively inhibits white-nose syndrome fungal pathogen Pseudogymnoascus destructans amidst soil microbes
Cited by: 15
Author(s): Amanpreet Singh, Erica Lasek‐Nesselquist, Vishnu Chaturvedi
Software Mentions: 2
Published: over 6 years ago

10.3390/foods9091194

Determining the Authenticity of Shark Meat Products by DNA Sequencing
Cited by: 23
Author(s): Patrizia Marchetti, Anna Mottola, Roberta Piredda, Giuseppina Ciccarese, Angela Di Pinto
Software Mentions: 2
Published: about 4 years ago

10.3389/fnbeh.2020.00160

Blast-Related Mild TBI Alters Anxiety-Like Behavior and Transcriptional Signatures in the Rat Amygdala
Cited by: 19
Author(s): Jennifer Blaze, Inbae Choi, Zhaoyu Wang, Michelle Umali, Natalia Mendelev, Anna E. Tschiffely, Stephen T. Ahlers, Gregory A. Elder, Yongchao Ge, Fatemeh Haghighi
Software Mentions: 2
Published: about 4 years ago

10.1186/s12864-015-2014-2

Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development
Cited by: 89
Author(s): Chunying Kang, Zhongchi Liu
Software Mentions: 2
Published: about 9 years ago

10.1002/2211-5463.12212

Crystal structure of the essential biotin-dependent carboxylase AccA3 fromMycobacterium tuberculosis
Cited by: 2
Author(s): M.D. Bennett, Martin Högbom
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-019-3232-4

Protein sequence information extraction and subcellular localization prediction with gapped k-Mer method
Cited by: 8
Author(s): Yao Yao, Yaping Lv, Ling Li, Huimin Xu, Binbin Ji, Jing Chen, Chun Li, Bo Liao, Xuying Nan
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcell.2021.657192

Loss of stra8 Increases Germ Cell Apoptosis but Is Still Compatible With Sperm Production in Atlantic Salmon (Salmo salar)
Cited by: 5
Author(s): Kai Ove Skaftnesmo, Diego Crespo, Lene Kleppe, Eva Andersson, Rolf B. Edvardsen, Birgitta Norberg, Per Gunnar Fjelldal, Tom Hansen, Rüdiger Schulz, Anna Wargelius
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2020.00649

Identification of a TLR-Induced Four-lncRNA Signature as a Novel Prognostic Biomarker in Esophageal Carcinoma
Cited by: 14
Author(s): Jing Liu, Han Li, Yanjie Chu, Ruiling Xu, Dekai Zhang, Xinhong Wang
Software Mentions: 2
Published: over 4 years ago

10.1002/2211-5463.12972

Recombinant transgelin‐like protein 1 fromMytilusshell induces formation of CaCO3polymorphic crystalsin vitro
Cited by: 1
Author(s): Yuting Jiang, Qi Sun, Meihua Fan, Jianyu He, Xiaolin Zhang, Hao Xu, Zhi Liao
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms7090322

Organs, Cultivars, Soil, and Fruit Properties Affect Structure of Endophytic Mycobiota of Pinggu Peach Trees
Cited by: 17
Author(s): Fei Ren, Wei Dong, Dong Yan
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2105-13-44

Grading amino acid properties increased accuracies of single point mutation on protein stability prediction
Cited by: 12
Author(s): Jianguo Liu, Xianjiang Kang
Software Mentions: 2
Published: over 12 years ago

10.3390/toxins12010041

Aberrant Expressional Profiling of Known MicroRNAs in the Liver of Silver Carp (Hypophthalmichthys molitrix) Following Microcystin-LR Exposure Based on samllRNA Sequencing
Cited by: 6
Author(s): Yiyi Feng, Xi Chen, Jing Ma, Bangjun Zhang, Xiaoyü Li
Software Mentions: 2
Published: almost 5 years ago

10.1111/1751-7915.12116

Activation and identification of five clusters for secondary metabolites in <scp>S</scp>treptomyces albus <scp>J</scp>1074
Cited by: 175
Author(s): Carlos Olano, Ignacio García, Aránzazu González, Martín González Rodríguez, Daniel Rozas, Jerónimo Rubio, Marina Sánchez‐Hidalgo, Alfredo F. Braña, Cármen Méndez, José A. Salas
Software Mentions: 2
Published: over 10 years ago

10.7717/peerj.8102

The Polycyclic Aromatic Hydrocarbon (PAH) degradation activities and genome analysis of a novel strainStenotrophomonas sp. Pemsol isolated from Mexico
Cited by: 23
Author(s): Temidayo Oluyomi Elufisan, Isabel Cristina Rodríguez-Luna, Omotayo Opemipo Oyedara, Alejandro Sánchez-Varela, Armando Hernández-Mendoza, Edgar Dantán-González, Alma D. Paz-González, Kashif Muhammad, Gildardo Rivera, Miguel Ángel Villalobos-López, Xianwu Guo
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-016-2613-6

A subtracted cDNA library identifies genes up-regulated during PHOT1-mediated early step of de-etiolation in tomato (Solanum lycopersicum L.)
Cited by: 4
Author(s): Petra Hloušková, Véronique Bergougnoux
Software Mentions: 2
Published: over 8 years ago

10.12688/f1000research.10040.1

YeATSAM analysis of the walnut and chickpea transcriptome reveals key genes undetected by current annotation tools
Cited by: 8
Author(s): Sandeep Chakraborty, Pedro Manuel Martínez-García, Abhaya M. Dandekar
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0151863

DNA Methylation and Potential for Epigenetic Regulation in Pygospio elegans
Cited by: 9
Author(s): Jenni Kesäniemi, Liisa Heikkinen, K. Emily Knott
Software Mentions: 2
Published: over 8 years ago

10.3390/microorganisms8121880

Reconstructing Genomes of Carbon Monoxide Oxidisers in Volcanic Deposits Including Members of the Class Ktedonobacteria
Cited by: 8
Author(s): Marcela Hernández, Blanca Vera-Gargallo, Marcela Calabi-Floody, Gary M. King, Ralf Conrad, Christoph C. Tebbe
Software Mentions: 2
Published: almost 4 years ago

10.1099/mic.0.041491-0

ccrAB Ent serine recombinase genes are widely distributed in the Enterococcus faecium and Enterococcus casseliflavus species groups and are expressed in E. faecium
Cited by: 9
Author(s): Eva katrin Bjørkeng, Girum Tadesse Tessema, Eirik W. Lundblad, Patrick Butaye, Rob J. L. Willems, Johanna U. Ericson Sollid, Arnfinn Sundsfjord, Kristin Hegstad
Software Mentions: 2
Published: almost 14 years ago

10.1111/eva.13239

Natural CO2 seeps reveal adaptive potential to ocean acidification in fish
Cited by: 8
Author(s): Natalia Petit-Marty, Ivan Nagelkerken, Sean D. Connell, Celia Schunter
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.590475

Identification and Expression Analysis of Long Non-coding RNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans Infection
Cited by: 12
Author(s): Xinyi Zhang, Tao Zhou, Baohua Chen, Haili Bai, Yulin Bai, Ji Zhao, Fei Pu, Yidi Wu, Chen Lin, You Shi, Qiaozhen Ke, Weiqiang Zheng, Jia Chen, Peng Xu
Software Mentions: 2
Published: about 4 years ago

10.1186/s12864-019-5545-0

An insight into the sialotranscriptome and virome of Amazonian anophelines
Cited by: 21
Author(s): Vera Margarete Scarpassa, Humberto Julio Debat, Ronildo Baiatone Alencar, José Ferreira Saraiva, Eric Calvo, Bruno Arcà, José M. C. Ribeiro
Software Mentions: 2
Published: over 5 years ago

10.1099/mic.0.2008/017939-0

Diversity of IncP-9 plasmids of Pseudomonas
Cited by: 49
Author(s): Yanina R. Sevastsyanovich, Renata Krasowiak, Lewis Bingle, Anthony S. Haines, С. Л. Соколов, И. А. Кошелева, Anastassia A. Leuchuk, М. А. Титок, Kornelia Smalla, Christopher M. Thomas
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0018755

Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade
Cited by: 82
Author(s): Leonidas Salichos, Antonis Rokas
Software Mentions: 2
Published: over 13 years ago

10.3389/fgene.2021.676751

Telomere Roles in Fungal Genome Evolution and Adaptation
Cited by: 11
Author(s): Mostafa Rahnama, Baohua Wang, Jane Dostart, О. С. Новікова, Daniel Yackzan, Andrew T. Yackzan, Haley Bruss, Maray Baker, Haven Jacob, Xiaofei Zhang, April Lamb, A. Keith Stewart, Melanie Heist, Joey Hoover, Patrick J. Calie, Li Chen, Jinze Liu, Mark L. Farman
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2021.620009

Comprehensive Pathogen Identification, Antibiotic Resistance, and Virulence Genes Prediction Directly From Simulated Blood Samples and Positive Blood Cultures by Nanopore Metagenomic Sequencing
Cited by: 9
Author(s): Mu Zhou, Yarong Wu, Timothy Kudinha, Peng Jia, Lei Wang, Yingchun Xu
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0057281

Quantitative Genetic Analysis of Retinal Degeneration in the Blind Cavefish Astyanax mexicanus
Cited by: 78
Author(s): Kelly E. O’Quin, Masato Yoshizawa, Pooja Doshi, William R. Jeffery
Software Mentions: 2
Published: almost 12 years ago

10.7717/peerj.8701

Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya
Cited by: 33
Author(s): Joseph Gichuhi, Sevgan Subramanian, Fathiya M. Khamis, J. van den Berg, Hannalene du Plessis, Sunday Ekesi, Jeremy K. Herren
Software Mentions: 2
Published: over 4 years ago

10.1186/s12967-021-02882-7

The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing
Cited by: 29
Author(s): Wenli Zhou, Zhang De, Zhengpeng Li, Huiqing Jiang, Jingnan Li, Rongrong Ren, Xuefeng Gao, Jianfeng Li, Xin Wang, Weifeng Wang, Yunsheng Yang
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2018.00012

Identification and Expression Analysis of Wheat TaGF14 Genes
Cited by: 12
Author(s): Jun Guo, Shuang Dai, Haosheng Li, Aifeng Liu, Cheng Liu, Dungong Cheng, Xinyou Cao, Xiusheng Chu, Shengnan Zhai, Jianjun Li, Zhendong Zhao, Song Jiang
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2105-10-S6-S15

Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria
Cited by: 36
Author(s): Mónica Santamaría, Saverio Vicario, Graziano Pappadà, Gaetano Scioscia, Claudio Scazzocchio, Cecilia Saccone
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0087624

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers
Cited by: 330
Author(s): Kenan Hadziavdic, Katrine Lekang, Anders Lanzén, Inge Jonassen, Eric M. Thompson, Christofer Troedsson
Software Mentions: 2
Published: almost 11 years ago

10.1155/2016/7823429

VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
Cited by: 19
Author(s): Yiqing Xu, Changwei Bi, Guoxin Wu, Suyun Wei, Xiaogang Dai, Tongming Yin, Ning Ye
Software Mentions: 2
Published: almost 9 years ago

10.3389/fgene.2020.00557

Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasitica
Cited by: 5
Author(s): Franck Panabières, Corinne Rancurel, Martine Da Rocha, Marie-Line Kühn
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2148-7-71

Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species
Cited by: 59
Author(s): Radhey S. Gupta, Emily Lorenzini
Software Mentions: 2
Published: almost 18 years ago

10.1099/mic.0.000489

DprA from Neisseria meningitidis: properties and role in natural competence for transformation
Cited by: 18
Author(s): Eirik Hovland, Getachew Tesfaye Beyene, Stephan A. Frye, Håvard Homberset, Seetha V. Balasingham, Marta Gómez-Muñoz, Jeremy P. Derrick, Tone Tønjum, Ole Herman Ambur
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-15-1022

Genome-wide mapping of matrix attachment regions in Drosophila melanogaster
Cited by: 27
Author(s): Rashmi U. Pathak, Arumugam Srinivasan, Rakesh K. Mishra
Software Mentions: 2
Published: almost 10 years ago

10.1186/1741-7007-7-83

Proteomic analysis of blastema formation in regenerating axolotl limbs
Cited by: 119
Author(s): Nandini Rao, Deepali Jhamb, Derek J. Milner, Bingbing Li, Feifei Song, Mu Wang, S. Randal Voss, Mathew Palakal, Michael W. King, Behnaz Saranjami, Holly L.D. Nye, Jo Ann Cameron, David L. Stocum
Software Mentions: 2
Published: almost 15 years ago

10.1186/s12866-018-1304-7

Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing
Cited by: 57
Author(s): Morgane Mailhe, Davide Ricaboni, Véronique Vitton, Jean-Michel González, Dipankar Bachar, Grégory Dubourg, F. Cadoret, Caroline Robert, Jérémy Delerce, Anthony Levasseur, Pierre‐Edouard Fournier, Emmanouil Angelakis, Jean-Christophe Lagier, Didier Raoult
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2018.00013

Differing House Finch Cytokine Expression Responses to Original and Evolved Isolates of Mycoplasma gallisepticum
Cited by: 20
Author(s): Michal Vinkler, Ariel E Leon, Laila T. Kirkpatrick, Rami A. Dalloul, Dana M. Hawley
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13072-020-00340-0

A comprehensive overview of bull sperm-borne small non-coding RNAs and their diversity across breeds
Cited by: 29
Author(s): Eli Sellem, Sylvain Marthey, Andrea Rau, Luc Jouneau, A. Bonnet, Jean‐Philippe Perrier, Sébastien Fritz, Chrystelle Le Danvic, Mekki Boussaha, Hélène Kiefer, Hélène Jammes, Laurent Schibler
Software Mentions: 2
Published: over 4 years ago

10.3389/fimmu.2021.646159

Development of Stable Chimeric IL-15 for Trans-Presentation by the Antigen Presenting Cells
Cited by: 3
Author(s): Manoj Patidar, Naveen Yadav, Sarat K. Dalai
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2164-15-1080

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications
Cited by: 31
Author(s): Stuart J. Lucas, Bala Anı Akpınar, Hana Šimková, Marie Kubaláková, Jaroslav Doležel, Hikmet Budak
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2164-11-384

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
Cited by: 167
Author(s): Sheng Guo, Yi Zheng, Je‐Gun Joung, Shiqiang Liu, Zhonghua Zhang, Oswald Crasta, Bruno W. S. Sobral, Yong Xu, Sanwen Huang, Zhangjun Fei
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0105015

Orthology Detection Combining Clustering and Synteny for Very Large Datasets
Cited by: 103
Author(s): Marcus Lechner, Maribel Hernández-Rosales, Daniel Doerr, Nicolas Wieseke, Annelyse Thévenin, Jens Stoye, Roland K. Hartmann, Sonja J. Prohaska, Peter F. Stadler
Software Mentions: 2
Published: over 10 years ago

10.1080/23802359.2021.1911712

Diversity and authentication of Rubus accessions revealed by complete plastid genome and rDNA sequences
Cited by: 4
Author(s): Young Sang Park, Jee Young Park, Jae-Mo Kang, Wan Hee Lee, Tae-Jin Yang
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2016.00797

Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile “Ferrovum”
Cited by: 36
Author(s): Sophie R. Ullrich, Carolina González, Anja Poehlein, Judith S. Tischler, Rolf Daniel, Michael Schlömann, David S. Holmes, Martin Mühling
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-13-249

IS-seq: a novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes
Cited by: 29
Author(s): Alejandro Reyes, Andrea Sandoval, Andrés Cubillos-Ruiz, Katherine E. Varley, Iván Hernandez-Neuta, Sofía Samper, Carlos Martı́n, María Jesús García García, Viviana Ritacco, Lucelly López, Jaime Robledo, María Mercedes Zambrano, Robi D. Mitra, Patricia Del Portillo
Software Mentions: 2
Published: over 12 years ago

10.1080/23802359.2021.1944386

The complete chloroplast genome of Codonopsis convolvulacea subsp. vinciflora
Cited by: 0
Author(s): Yangzom Pema, Chao Ma
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2016.00875

DGV: Dengue Genographic Viewer
Cited by: 16
Author(s): Akifumi Yamashita, Tetsuya Sakamoto, Tsuyoshi Sekizuka, Kengo Kato, Tomohiko Takasaki, Makoto Kuroda
Software Mentions: 2
Published: over 8 years ago

10.1080/23802359.2020.1861558

Characteristics of complete chloroplast genome of a high-quality forage on Qinghai-Tibet Plateau, Medicago archiducis-nicolai Sirj. (Fabaceae：Trifolieae)
Cited by: 2
Author(s): Jun Xie, Chengbo Liang, Zongren Li, Zhongke Ji, Weiyou Ou, Lun Hua, Haichun Wang, Kazhuocairang, Zhiqiang Hou
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2164-12-108

Characterization of statistical features for plant microRNA prediction
Cited by: 61
Author(s): Vivek Thakur, Samart Wanchana, Mercedes Xu, Richard Bruskiewich, W. Paul Quick, Axel Mosig, Xin‐Guang Zhu
Software Mentions: 2
Published: almost 14 years ago

10.1186/1748-7188-8-14

LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search
Cited by: 15
Author(s): Sebastian Will, Michael Siebauer, Steffen Heyne, Jan Engelhardt, Peter F. Stadler, Kristin Reiche, Rolf Backofen
Software Mentions: 2
Published: over 11 years ago

10.1080/23802359.2018.1522982

Complete mitogenome of the biocontroller fungus Purpureocillium sp. (Ascomycota, Ophiocordycipitaceae, Hypocreales)
Cited by: 2
Author(s): Nadya Lorena Cardona, Nicolás D. Franco‐Sierra, Javier Correa Álvarez
Software Mentions: 2
Published: over 6 years ago

10.1111/1462-2920.13036

Closing the gaps on the viral photosystem‐ <scp>I</scp> psa <scp>DCAB</scp> gene organization
Cited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: about 9 years ago

10.1186/s12866-020-01763-1

Protein–protein interaction of Rv0148 with Htdy and its predicted role towards drug resistance in Mycobacterium tuberculosis
Cited by: 3
Author(s): Gunapati Bhargavi, Sameer Hassan, S. Balaji, Srikanth Tripathy, Kannan Palaniyandi
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-48824-8

The Single-molecule long-read sequencing of Scylla paramamosain
Cited by: 14
Author(s): Haifu Wan, Xiaoyun Jia, Pengfei Zou, Ziping Zhang, Yilei Wang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49550-x

ALKBH overexpression in head and neck cancer: potential target for novel anticancer therapy
Cited by: 41
Author(s): Tomaš Pilžys, Michał Marcinkowski, Wojciech Kukwa, Damian Garbicz, Małgorzata Dylewska, Karolina Ferenc, Adam Mieczkowski, Andrzej Kukwa, Ewa Migacz, Dominika Wołosz, Damian Mielecki, Arne Klungland, Jan Piwowarski, Jarosław Poznański, Elżbieta Grzesiuk
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-016-3370-2

Genotype-by-sequencing facilitates genetic mapping of a stem rust resistance locus in Aegilops umbellulata, a wild relative of cultivated wheat
Cited by: 27
Author(s): Erena A. Edae, Pablo D. Olivera, Yue Jin, Jesse Poland, Matthew N. Rouse
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13100-015-0054-4

The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants
Cited by: 3
Author(s): Stefan Roffler, Fabrizio Menardo, Thomas Wicker
Software Mentions: 2
Published: almost 9 years ago

10.1111/j.1462-2920.2008.01667.x

The Cry48Aa-Cry49Aa binary toxin fromBacillus sphaericusexhibits highly restricted target specificity
Cited by: 37
Author(s): Gareth Wyn Jones, Margaret C. Wirth, R. G. Monnerat, Colin Berry
Software Mentions: 2
Published: over 16 years ago

10.1186/s12864-016-2362-6

Identification of the genes involved in odorant reception and detection in the palm weevil Rhynchophorus ferrugineus, an important quarantine pest, by antennal transcriptome analysis
Cited by: 74
Author(s): Binu Antony, Alan Soffan, Jernej Jakše, Mahmoud Abdelazim, Saleh A. Aldosari, Abdulrahman S. Aldawood, Arnab Pain
Software Mentions: 2
Published: almost 9 years ago

10.1099/mgen.0.000159

The diversity of ice algal communities on the Greenland Ice Sheet as revealed by oligotyping
Cited by: 35
Author(s): Stefanie Lutz, Jenine McCutcheon, James B. McQuaid, Liane G. Benning
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.01925

Characterization of ML-005, a Novel Metaproteomics-Derived Esterase
Cited by: 6
Author(s): Premankur Sukul, Natalie Lupilov, Lars I. Leichert
Software Mentions: 2
Published: over 6 years ago

10.1099/mgen.0.000198

Trends in fluoroquinolone resistance in Campylobacter
Cited by: 76
Author(s): E. L. Sproston, Helen M. L. Wimalarathna, Samuel K. Sheppard
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0118479

Flower Bud Transcriptome Analysis of Sapium sebiferum (Linn.) Roxb. and Primary Investigation of Drought Induced Flowering: Pathway Construction and G-Quadruplex Prediction Based on Transcriptome
Cited by: 21
Author(s): Minglei Yang, Ying Wu, Shiwei Jin, Jinyan Hou, Yingji Mao, Wenbo Liu, Yangcheng Shen, Lifang Wu
Software Mentions: 2
Published: over 9 years ago

10.1007/s11032-015-0430-2

Orphan Crops Browser: a bridge between model and orphan crops
Cited by: 18
Author(s): Claire Lessa Alvim Kamei, Edouard Severing, Annemarie Dechesne, Heleen Furrer, O. Dolstra, Luisa M. Trindade
Software Mentions: 2
Published: almost 9 years ago

Projects: pypi: blast

Papers Mentioning blast 1,819