pypi: blast | Projects | Ecosyste.ms: Papers

10.1111/1755-0998.12626

Strategies for complete plastid genome sequencing
Cited by: 104
Author(s): Alex D. Twyford, Rob W. Ness
Software Mentions: 2
Published: almost 10 years ago

Copy number variation in the MSRB3 gene enlarges porcine ear size through a mechanism involving miR-584-5p
Cited by: 26
Author(s): Congying Chen, Chenlong Liu, Xinwei Xiong, Shouguo Fang, Hui Yang, Zhiyan Zhang, Jun Ren, Yuanmei Guo, Lusheng Huang
Software Mentions: 2
Published: almost 8 years ago

10.1111/1755-0998.13277

A powerful long metabarcoding method for the determination of complex diets from faecal analysis of the European pond turtle (Emys orbicularis, L. 1758)
Cited by: 3
Author(s): Charlotte Ducotterd, Julien Crovadore, François Lefort, Jean‐François Rubin, Sylvain Ursenbacher
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12862-015-0423-0

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
Cited by: 304
Author(s): Stephen A. Smith, Michael J. Moore, Joseph W. Brown, Ya Yang
Software Mentions: 2
Published: about 11 years ago

10.1186/s12866-017-1049-8

Trichoderma virens β-glucosidase I (BGLI) gene; expression in Saccharomyces cerevisiae including docking and molecular dynamics studies
Cited by: 10
Author(s): Gammadde Hewa Ishan Maduka Wickramasinghe, Samith Rathnayake, N.V. Chandrasekharan, Mahindagoda Siril Samantha Weerasinghe, Ravindra Lakshman Chundananda Wijesundera, W.S.S. Wijesundera
Software Mentions: 2
Published: over 9 years ago

10.1186/s12866-015-0615-1

Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads
Cited by: 21
Author(s): Vímac Nolla-Ardèvol, Miriam Peces, Marc Strous, Halina E. Tegetmeyer
Software Mentions: 2
Published: almost 11 years ago

10.1186/gb-2007-8-1-r9

Cited by: 52
Author(s): John Wang, Stephanie Jemielity, Paolo Uva, Yannick Wurm, Johannes Gräff, Laurent Keller
Software Mentions: 2
Published: almost 20 years ago

10.1186/s12862-017-1007-y

Segmental duplications: evolution and impact among the current Lepidoptera genomes
Cited by: 11
Author(s): Qian Zhao, Dongna Ma, Liette Vasseur, Minsheng You
Software Mentions: 2
Published: over 9 years ago

10.1186/s13059-016-0915-2

CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries
Cited by: 64
Author(s): Florian Heigwer, Tianzuo Zhan, Marco Breinig, J. Winter, Dirk Brügemann, Svenja Leible, Michael Boutros
Software Mentions: 2
Published: over 10 years ago

10.1186/s13059-020-01980-x

Diverse genetic mechanisms underlie worldwide convergent rice feralization
Cited by: 47
Author(s): Jie Qiu, Jia Lu, Dongya Wu, Xifang Weng, Lijuan Chen, Jian Sun, Meihong Chen, Limin Mao, Bowen Jiang, Chu-Yu Ye, Guilherme Menegol Turra, Longbiao Guo, Guoyou Ye, Qian Zhu, Toshiyuki Imaizumi, Beng Kah Song, Laura Scarabel, Aldo Merotto, Kenneth M. Olsen, Longjiang Fan
Software Mentions: 2
Published: over 6 years ago

10.1093/gbe/evz266

Evolutionary History of the Toll-Like Receptor Gene Family across Vertebrates
Cited by: 64
Author(s): Guangshuai Liu, Huanxin Zhang, Chao Zhao, Honghai Zhang
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13073-015-0259-7

Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network
Cited by: 58
Author(s): Hayley J. Brodrick, Kathy E. Raven, Ewan M. Harrison, Beth Blane, Sandra Reuter, M. Estée Török, Julian Parkhill, Sharon J. Peacock
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13073-018-0574-x

Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia
Cited by: 42
Author(s): Stefano Giulieri, Sarah L. Baines, Romain Guérillot, Torsten Seemann, Anders Gonçalves da Silva, Mark B. Schultz, Ruth C. Massey, Natasha E Holmes, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2229-8-56

Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta
Cited by: 17
Author(s): Kathrin Bolte, Oliver Kawach, Julia Prechtl, Nicole Gruenheit, Julius O. Nyalwidhe, Uwe G. Maier
Software Mentions: 2
Published: over 18 years ago

10.1111/gbi.12316

A combined lipidomic and 16S <scp>rRNA</scp> gene amplicon sequencing approach reveals archaeal sources of intact polar lipids in the stratified Black Sea water column
Cited by: 49
Author(s): Martina Sollai, Laura Villanueva, Ellen C. Hopmans, Gert‐Jan Reichart, Jaap S. Sinninghe Damsté
Software Mentions: 2
Published: about 8 years ago

10.1186/s12870-014-0316-1

Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process
Cited by: 80
Author(s): Mehar Hasan Asif, Deepika Lakhwani, Sumya Pathak, Parul Gupta, Sumit K. Bag, Paras Nath, Prabodh Kumar Trivedi
Software Mentions: 2
Published: almost 12 years ago

10.1111/gcbb.12280

Association mapping in Salix viminalis L. (Salicaceae) – identification of candidate genes associated with growth and phenology
Cited by: 29
Author(s): Henrik R. Hallingbäck, Johan Fogelqvist, Stephen J. Powers, Juan Luis Turrion-Gomez, Rachel Rossiter, Joanna S. Amey, Tom Martin, Martin Weih, Niclas Gyllenstrand, A. Karp, Ulf Lagercrantz, Steven J. Hanley, Sofia Berlin, Ann Christin Rönnberg‐Wästljung
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2164-9-254

Exploiting orthologue diversity for systematic detection of gain-of-function phenotypes
Cited by: 5
Author(s): Marialuisa Martelli, Claudio Isella, Alessia Mira, Li‐Chen Fu, Daniela Cantarella, Enzo Medico
Software Mentions: 2
Published: over 18 years ago

10.1186/s13099-019-0297-6

Compositional and functional differences in human gut microbiome with respect to equol production and its association with blood lipid level: a cross-sectional study
Cited by: 23
Author(s): Wei Zheng, Yue Ma, Aihua Zhao, Tao He, Na Lyu, Zhengqiang Pan, Geqi Mao, Yan Liu, Jing Li, Peiyu Wang, Jun Wang, Baoli Zhu, Yumei Zhang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41437-019-0260-9

Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar’s hibernating dwarf lemurs
Cited by: 14
Author(s): Rachel C. Williams, Marina B. Blanco, Jelmer W. Poelstra, Kelsie E Hunnicutt, Aaron A. Comeault, Anne D. Yoder
Software Mentions: 2
Published: about 7 years ago

10.1038/s41438-020-0265-9

Intra- and interspecific diversity analyses in the genus Eremurus in Iran using genotyping-by-sequencing reveal geographic population structure
Cited by: 8
Author(s): Hanieh Hadizadeh, Bochra Amina Bahri, Peng Qi, H. Dayton Wilde, Katrien M. Devos
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-019-1908-6

Time-series transcriptome provides insights into the gene regulation network involved in the volatile terpenoid metabolism during the flower development of lavender
Cited by: 32
Author(s): Hui Li, Jingrui Li, Yanmei Dong, Haiping Hao, Zhengyi Ling, Hongtong Bai, Huafang Wang, Hongxia Cui, Lei Shi
Software Mentions: 2
Published: over 7 years ago

10.1038/s41438-020-0333-1

High-density genetic map construction and identification of loci controlling flower-type traits in Chrysanthemum (Chrysanthemum × morifolium Ramat.)
Cited by: 25
Author(s): Xueqin Song, Yuhui Xu, Guolian Kang, Guangxun Fan, Fan Zhang, Chengyan Deng, Silan Dai, Hua He, Huaigen Xin, Yingying Li
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-13-334

Protein interface classification by evolutionary analysis
Cited by: 126
Author(s): José M. Duarte, Adam Srebniak, Martin A. Schärer, Guido Capitani
Software Mentions: 2
Published: almost 14 years ago

10.1111/j.1365-2958.2007.05785.x

An atypical receiver domain controls the dynamic polar localization of the Myxococcus xanthus social motility protein FrzS
Cited by: 32
Author(s): James S. Fraser, John P. Merlie, Nathaniel Echols, Shellie R. Weisfield, Tâm Mignot, David E. Wemmer, David R. Zusman, Tom Alber
Software Mentions: 2
Published: over 19 years ago

10.3390/insects11110736

Gene Sequences of Potential Targets of Insecticidal PF2 Lectin Identified from the Larval De Novo Transcriptome of the Mexican Bean Weevil (Zabrotes Subfasciatus; Boheman 1833)
Cited by: 3
Author(s): Irlanda Lagarda-Díaz, Miguel Ángel Hernández‐Oñate, José Ángel Huerta‐Ocampo, Ana María Guzmán-Partida, Joy J. Winzerling, Dawn L. Geiser, Luz Vázquez–Moreno
Software Mentions: 2
Published: about 6 years ago

10.3390/insects12060563

The Draft Genome of Yellow Stem Borer, an Agriculturally Important Pest, Provides Molecular Insights into Its Biology, Development and Specificity Towards Rice for Infestation
Cited by: 2
Author(s): Divya Kattupalli, Kalyani M. Barbadikar, B. Vishalakshi, Suneel Ballichatla, R Athulya, A. P. Padmakumari, Swati Saxena, Kishor Gaikwad, Sridhar Yerram, K. Premalatha, Sheshu Madhav Maganti
Software Mentions: 2
Published: over 5 years ago

10.1186/s40104-018-0260-2

Molecular characterization and expression patterns of Nanog gene validating its involvement in the embryonic development and maintenance of spermatogonial stem cells of farmed carp, Labeo rohita
Cited by: 14
Author(s): Swagat Kumar Patra, Vemulawada Chakrapani, Meenati Manjari Soren, Jitendra Kumar Sundaray, Manoj Panda, Hirak Kumar Barman
Software Mentions: 2
Published: over 8 years ago

10.1186/s40104-019-0408-8

Evaluation of heat stress effects on cellular and transcriptional adaptation of bovine granulosa cells
Cited by: 48
Author(s): Adnan Khan, Junling Dou, Yachun Wang, Xiaolong Jiang, Muhammad Zahoor Khan, Hanpeng Luo, Τahir Usman, Huabin Zhu
Software Mentions: 2
Published: over 6 years ago

10.1186/s40709-016-0038-7

NaCl stress-induced transcriptomics analysis of Salix linearistipularis (syn. Salix mongolica)
Cited by: 7
Author(s): Nan Gui-xian, Yan Zhang, Song Li, Imshik Lee, Tetsuo Takano, Shenkui Liu
Software Mentions: 2
Published: over 10 years ago

10.1111/j.1365-2958.2007.05978.x

Identification of differentially expressed small non‐coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics
Cited by: 102
Author(s): Coral del Val, Elena Rivas, Omar Torres‐Quesada, Nicolás Toro, Josè I. Jiménez-Zurdo
Software Mentions: 2
Published: about 19 years ago

10.34172/jcvtr.2020.02

Novel single nucleotide mutations in exon-10 of human coagulationFactor V gene in patients with pulmonary thromboembolism
Cited by: 1
Author(s): Latheef Kasala, D. Rajasekhar, V. Vanajakshamma
Software Mentions: 2
Published: almost 7 years ago

10.1111/jcmm.16358

Analysis of T‐cell receptor repertoire in peripheral blood of patients with pancreatic cancer and other pancreatic diseases
Cited by: 2
Author(s): Hui Wang, Yue Yuan, Chunfeng Lu, Siqi Zhou, Yixuan Zhang, Jing Zhao, Chenghu Xu, Jie Yang, Haochen Su, Borui Li, Xi-Han Li, Pin Wang, Guifang Xu, Lei Wang, Xiaoping Zou, Shanshan Bao, Shu Zhang, Ying Lv
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-13-621

Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major
Cited by: 37
Author(s): Vijayendran Gowri, Indira Ghosh, Amit Sharma, Rentala Madhubala
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12870-021-03024-3

Genome-wide identification and functional analysis of U-box E3 ubiquitin ligases gene family related to drought stress response in Chinese white pear (Pyrus bretschneideri)
Cited by: 18
Author(s): Chunmeng Wang, Bobo Song, Yuqin Dai, Shaoling Zhang, Xiaosan Huang
Software Mentions: 2
Published: over 5 years ago

10.1111/j.1365-2958.2007.05753.x

Gene encoding a deubiquitinating enzyme is mutated in artesunate‐ and chloroquine‐resistant rodent malaria parasites§
Cited by: 152
Author(s): Paul Hunt, Ana Afonso, Alison M. Creasey, Richard Culleton, Amar Bir Singh Sidhu, John G. Logan, Stephanie G. Valderramos, I.W. McNae, Sandra Cheesman, Virgı́lio do Rosário, Richard Carter, David A. Fidock, Pedro Vitor Lemos Cravo
Software Mentions: 2
Published: over 19 years ago

10.1186/s12864-016-3266-1

Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii
Cited by: 31
Author(s): Yan Zhu, Longxian Chen, Chengjun Zhang, Pei Hao, Xinyun Jing, Xuan Li
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12864-015-1737-4

Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress
Cited by: 22
Author(s): Valeria Wallace-Salinas, Daniel P. Brink, Dag Ahrén, Marie-Françoise Gorwa-Grauslund
Software Mentions: 2
Published: over 11 years ago

10.1002/prot.24915

The value of protein structure classification information-Surveying the scientific literature
Cited by: 19
Author(s): Naomi Fox, Steven E. Brenner, John-Marc Chandonia
Software Mentions: 2
Published: about 11 years ago

10.1186/1477-5956-8-56

Proteome changes in platelets activated by arachidonic acid, collagen, and thrombin
Cited by: 45
Author(s): Pavel Májek, Zuzana Reicheltová, Jana Štikarová, Jiřı́ Suttnar, Alžběta Sobotková, Jan E. Dyr
Software Mentions: 2
Published: almost 16 years ago

10.1111/mpp.12346

Identification of pathogenicity‐related genes in Fusarium oxysporum f. sp. cepae
Cited by: 91
Author(s): Andrew Taylor, Viktória Vágány, Alison C. Jackson, Richard J. Harrison, Alessandro Rainoni, John P. Clarkson
Software Mentions: 2
Published: over 10 years ago

10.1186/s12870-017-0983-9

Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s
Cited by: 47
Author(s): LI Xu-yan, Xin Xie, Ji Li, Yuhai Cui, Yanming Hou, Lulu Zhai, Xiao Wang, Yanli Fu, Ranran Liu, Shaomin Bian
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2164-12-283

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing
Cited by: 64
Author(s): Anna W. Santure, Jacob Gratten, Jim A. Mossman, Ben C. Sheldon, Jon Slate
Software Mentions: 2
Published: over 15 years ago

10.1186/s12284-017-0147-4

Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm
Cited by: 48
Author(s): Christine Jade Dilla-Ermita, Erwin Tandayu, Venice Margarette Juanillas, Jeffrey Detras, Dennis N. Lozada, Maria Stefanie Dwiyanti, Casiana Vera Cruz, Edwige Gaby Nkouaya Mbanjo, E. Y. Ardales, Maria Genaleen Q. Diaz, Merlyn S. Mendioro, Michael J. Thomson, Tobias Kretzschmar
Software Mentions: 2
Published: over 9 years ago

10.1038/sdata.2015.15

De novo transcriptome assembly databases for the central nervous system of the medicinal leech
Cited by: 22
Author(s): Dror Hibsh, Hadas Schori, Sol Efroni, Orit Shefi
Software Mentions: 2
Published: over 11 years ago

10.15252/msb.202110302

Spurious regulatory connections dictate the expression‐fitness landscape of translation factors
Cited by: 6
Author(s): Jean-Benoît Lalanne, Darren J. Parker, Gene-Wei Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-021-02850-9

Reduced expression of a subunit gene of sucrose non-fermenting 1 related kinase, PpSnRK1βγ, confers flat fruit abortion in peach by regulating sugar and starch metabolism
Cited by: 1
Author(s): Jian Guo, Ke Cao, Jia‐Long Yao, Cecilia Deng, Yong Li, Guoqiang Zhu, Weichao Fang, Chang Wen Chen, Xinwei Wang, Jinlong Wu, Wen‐Wu Guo, Lirong Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-015-0636-9

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil
Cited by: 21
Author(s): Emmanuel González, Nicholas J. B. Brereton, Julie Marleau, Werther Guidi Nissim, Michel Labrecque, Frédéric E. Pitre, Simon Joly
Software Mentions: 2
Published: about 11 years ago

10.1038/srep14446

Transcriptome and gene expression analysis of DHA producer Aurantiochytrium under low temperature conditions
Cited by: 52
Author(s): Zhenhua Ma, Yuxiang Tan, Guizhong Cui, Yingang Feng, Qiu Cui, Xiaojin Song
Software Mentions: 2
Published: about 11 years ago

10.1186/s12870-018-1525-9

Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr
Cited by: 7
Author(s): Yi Gan, Yu Song, Yadong Chen, Hongbo Liu, Dongdong Yang, Qian-Yu XU, Zhifu Zheng
Software Mentions: 2
Published: almost 8 years ago

10.1186/1743-422X-2-60

HBx M130K and V131I (T-A) mutations in HBV genotype F during a follow-up study in chronic carriers
Cited by: 27
Author(s): Bernal León, Lizeth Taylor, M C Vargas, Ronald B. Luftig, Federico J. Albertazzi, Libia Herrero, Kirsten A. Visoná
Software Mentions: 2
Published: over 21 years ago

10.1186/1471-2164-13-221

Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses
Cited by: 46
Author(s): Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, Philippe Lecomte, Ingrid Mercier, Hélène Bergès, Caroline Pont, A. Blanco, Jérôme Salse
Software Mentions: 2
Published: over 14 years ago

10.1038/srep17551

Transcriptomes reveal the genetic mechanisms underlying ionic regulatory adaptations to salt in the crab-eating frog
Cited by: 14
Author(s): Yong Shao, Lijun Wang, Li Zhong, Mingsheng Hong, Hong‐Man Chen, Robert W. Murphy, Dong‐Dong Wu, Yaping Zhang, Jing Che
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12859-018-2452-3

PCRdrive: the largest qPCR assay archive to date and endless potential for lab workflow revitalization
Cited by: 0
Author(s): Florian Bürger, Michele Angioni, Gianluca Russo, Martina Schad, Jim Kallarackal
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12870-019-1882-z

Ethylene-mediated improvement in sucrose accumulation in ripening sugarcane involves increased sink strength
Cited by: 33
Author(s): Zhongliang Chen, Cui-Xian Qin, Miao Wang, Fang Liao, Qing Liao, Xihui Liu, Yang‐Rui Li, Prakash Lakshmanan, M. I. E. Long, Dongliang Huang
Software Mentions: 2
Published: over 7 years ago

10.1038/srep21016

Comparative genomics of mitochondria in chlorarachniophyte algae: endosymbiotic gene transfer and organellar genome dynamics
Cited by: 21
Author(s): Goro Tanifuji, John M. Archibald, Takeji Hashimoto
Software Mentions: 2
Published: over 10 years ago

10.1038/srep23234

A MicroRNA-Mediated Insulin Signaling Pathway Regulates the Toxicity of Multi-Walled Carbon Nanotubes in Nematode Caenorhabditis elegans
Cited by: 44
Author(s): Yunli Zhao, Yang Jiao, Dayong Wang
Software Mentions: 2
Published: over 10 years ago

10.1038/srep25708

Transcriptomic responses of the calanoid copepod Calanus finmarchicus to the saxitoxin producing dinoflagellate Alexandrium fundyense
Cited by: 28
Author(s): Vittoria Roncalli, Matthew Cieslak, Petra H. Lenz
Software Mentions: 2
Published: over 10 years ago

10.1038/srep26621

Metagenomic sequencing reveals the relationship between microbiota composition and quality of Chinese Rice Wine
Cited by: 104
Author(s): Xutao Hong, Jing Chen, Lin Liu, Huan Wu, Hai-Qin Tan, Guangfa Xie, Qian Xu, Huijun Zhang, Wenjing Yu, Lan Wang, Nan Qin
Software Mentions: 2
Published: over 10 years ago

10.1080/21505594.2017.1384895

Galleria mellonella as an infection model to investigate virulence of Vibrio parahaemolyticus
Cited by: 38
Author(s): Sariqa Wagley, Richard Borne, Jamie Harrison, Craig Baker‐Austin, Donatella Ottaviani, Francesca Leoni, Varaporn Vuddhakul, Richard W. Titball
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep32006

Genome-wide identification of cassava R2R3 MYB family genes related to abscission zone separation after environmental-stress-induced abscission
Cited by: 26
Author(s): Wenbin Liao, Yiling Yang, Yayun Li, Gan Wang, Ming Peng
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2229-14-99

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
Cited by: 204
Author(s): Nicola Vitulo, Claudio Forcato, Elisa Corteggiani Carpinelli, Andrea Telatin, Davide Campagna, Michela D’Angelo, Rosanna Zimbello, Massimiliano Corso, Alessandro Vannozzi, Claudio Bonghi, Margherita Lucchin, Giorgio Valle
Software Mentions: 2
Published: over 12 years ago

10.1080/21505594.2021.1878743

The transcription factor Ndt80 is a repressor of Candida parapsilosis virulence attributes
Cited by: 5
Author(s): Joana Branco, Cláudia Martins-Cruz, Lisa Rodrigues, Raquel M. Silva, Nuno Araújo‐Gomes, Teresa Gonçalves, Isabel M. Miranda, Acácio G. Rodrigues
Software Mentions: 2
Published: over 5 years ago

10.1038/srep39034

Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments
Cited by: 26
Author(s): Olga V. Golyshina, Ilya V. Kublanov, Hai Tran, Aleksei A. Korzhenkov, Heinrich Lünsdorf, Taras Y. Nechitaylo, С. Н. Гаврилов, Stepan V. Toshchakov, Peter N. Golyshin
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12870-018-1594-9

Transciptome profiling at early infection of Elaeis guineensis by Ganoderma boninense provides novel insights on fungal transition from biotrophic to necrotrophic phase
Cited by: 27
Author(s): Mohammad Nazri Abdul Bahari, Nurshafika Mohd Sakeh, Siti Nor Akmar Abdullah, Redzyque Ramza Ramli, Saeid Kadkhodaei
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41396-020-00860-3

CRISPR-Cas systems restrict horizontal gene transfer in Pseudomonas aeruginosa
Cited by: 46
Author(s): Rachel M. Wheatley, R. Craig MacLean
Software Mentions: 2
Published: almost 6 years ago

10.3390/v11050419

Revisiting the Role of Transcription Factors in Coordinating the Defense Response Against Citrus Bark Cracking Viroid Infection in Commercial Hop (Humulus Lupulus L.)
Cited by: 20
Author(s): Vishnu Sukumari Nath, Ajay Kumar Mishra, Atul Kumar, J. Matoušek, Jernej Jakše
Software Mentions: 2
Published: over 7 years ago

10.1038/s41396-018-0326-3

Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation
Cited by: 83
Author(s): Greta Reintjes, Carol Arnosti, Bernhard M. Fuchs, Rudolf Amann
Software Mentions: 2
Published: almost 8 years ago

10.3390/v13020193

Investigating the Diversity and Host Range of Novel Parvoviruses from North American Ducks Using Epidemiology, Phylogenetics, Genome Structure, and Codon Usage Analysis
Cited by: 10
Author(s): Marta Canuti, Joost T. P. Verhoeven, Hannah J. Munro, Sheena Roul, Davor Ojkić, Gregory J. Robertson, Hugh Whitney, Suzanne C. Dufour, Andrew S. Lang
Software Mentions: 2
Published: almost 6 years ago

10.3390/jof7050399

What Role Might Non-Mating Receptors Play in Schizophyllum commune?
Cited by: 9
Author(s): Sophia Wirth, Daniela Freihorst, Katrin Krause, Erika Kothe
Software Mentions: 2
Published: over 5 years ago

10.3390/v13030481

Olea Europaea Geminivirus: A Novel Bipartite Geminivirid Infecting Olive Trees
Cited by: 13
Author(s): Michela Chiumenti, C. Greco, A. De Stradis, Giuliana Loconsole, Vincenzo Cavalieri, Giuseppe Altamura, Stefania Zicca, P. Saldarelli, María Saponari
Software Mentions: 2
Published: over 5 years ago

10.1099/vir.0.027557-0

Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008
Cited by: 122
Author(s): Alessio Lorusso, Amy L. Vincent, Michelle Harland, David P. Alt, Darrell O. Bayles, Sabrina L. Swenson, Marie Gramer, Colin A. Russell, Derek J. Smith, Kelly M. Lager, Nicola S. Lewis
Software Mentions: 2
Published: almost 16 years ago

10.1099/vir.0.059238-0

Novel hepatitis E like virus found in Swedish moose
Cited by: 53
Author(s): Jay Lin, Helené Norder, Henrik Uhlhorn, Sándor Bélak, Frederik Widén
Software Mentions: 2
Published: over 12 years ago

10.1186/s12870-015-0587-1

Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae
Cited by: 65
Author(s): Raimi Mohamed Redwan, Akzam Saidin, Vijay Kumar Subbiah
Software Mentions: 2
Published: about 11 years ago

10.1099/jgv.0.000771

Genome sequence variation in the constricta strain dramatically alters the protein interaction and localization map of Potato yellow dwarf virus
Cited by: 16
Author(s): Chanyong Jang, Renyuan Wang, Joseph R. Wells, F. A. Ponce de León, Mark L. Farman, John Hammond, Michael M. Goodin
Software Mentions: 2
Published: over 9 years ago

10.1099/jgv.0.001315

Discovery of two highly divergent negative-sense RNA viruses associated with the parasitic nematode, Capillaria hepatica, in wild Mus musculus from New York City
Cited by: 14
Author(s): Simon H. Williams, Xiaoyu Che, Alexandra Oleynik, Joel A. Garcia, Dorothy R. Muller, Tanja S. Zabka, Cadhla Firth, Robert M. Corrigan, Thomas Briese, Komal Jain, W. Ian Lipkin
Software Mentions: 2
Published: about 7 years ago

10.1099/jgv.0.001607

Identification of protein interactions of grapevine fanleaf virus RNA-dependent RNA polymerase during infection of Nicotiana benthamiana by affinity purification and tandem mass spectrometry
Cited by: 2
Author(s): Larissa J. Osterbaan, Victoria Hoyle, Michelle Curtis, Stacy L. DeBlasio, Keith Rivera, Michelle Heck, Marc Fuchs
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-020-2239-3

Genome-wide identification and analysis of B-BOX gene family in grapevine reveal its potential functions in berry development
Cited by: 40
Author(s): Hongru Wei, Peipei Wang, Jianqing Chen, Changjun Li, Yongzhang Wang, Yuan Yang, Jinggui Fang, Xiangpeng Leng
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-019-1785-z

Development and characterisation of interspecific hybrid lines with genome-wide introgressions from Triticum timopheevii in a hexaploid wheat background
Cited by: 21
Author(s): Uma Devi, Surbhi Grewal, Caiyun Yang, Stella Hubbart‐Edwards, Duncan Scholefield, Stephen Ashling, Amanda Burridge, Ian P. King, Julie King
Software Mentions: 2
Published: over 7 years ago

10.1186/s12862-016-0602-7

Evolutionary patterns of Toll-like receptor signaling pathway genes in the Suidae
Cited by: 5
Author(s): Kwame A. Darfour‐Oduro, Hendrik‐Jan Megens, Alfred L. Roca, Martien A. M. Groenen, Lawrence B. Schook
Software Mentions: 2
Published: over 10 years ago

10.1155/2021/2590665

Whole-Genome Duplication and Purifying Selection Contributes to the Functional Redundancy of Auxin Response Factor (ARF) Genes in Foxtail Millet (Setaria italica L.)
Cited by: 6
Author(s): Chun‐Xiang You, Bin Liu, Yujun Zhao, Wei Yu, Weina Si
Software Mentions: 2
Published: about 5 years ago

10.1186/1753-6561-3-S4-S14

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
Cited by: 11
Author(s): Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornshøj, Magali SanCristobal, Pierre Mormède, Dirk-Jan de Koning
Software Mentions: 2
Published: over 17 years ago

10.1186/s13071-019-3770-7

Whole-genome sequencing of ocular Chlamydia trachomatis isolates from Gadarif State, Sudan
Cited by: 9
Author(s): Abdulazeem Abdulsalam Ibrahim Alkhidir, Martin J. Holland, Wafa Ibrahim Elhag, Charlotte A. Williams, Judith Breuer, Abdah Elfatih Elemam, Khalid Mohamed Khalid El Hussain, Mohammed E. H. Ournasseir, Harry Pickering
Software Mentions: 2
Published: almost 7 years ago

10.1099/ijsem.0.004806

Kaustia mangrovi gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed Parvibaculaceae family within the order Rhizobiales
Cited by: 12
Author(s): Fatmah O. Sefrji, Ramona Marasco, Grégoire Michoud, Kholoud Seferji, Giuseppe Merlino, Daniele Daffonchio
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-12-436

Analysis of high-identity segmental duplications in the grapevine genome
Cited by: 31
Author(s): Giuliana Giannuzzi, Pietro D’Addabbo, Marica Gasparro, M. Martinelli, Francesco Nicola Carelli, Donato Antonacci, Mario Ventura
Software Mentions: 2
Published: about 15 years ago

10.1186/s13104-015-1683-x

Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates
Cited by: 1
Author(s): Mbaye Tine
Software Mentions: 2
Published: almost 11 years ago

10.1007/s13205-014-0238-5

Diversified diazotrophs associated with the rhizosphere of Western Indian Himalayan native red kidney beans (Phaseolus vulgaris L.)
Cited by: 24
Author(s): Deep Chandra Suyal, Amit Yadav, Yogesh S. Shouche
Software Mentions: 2
Published: over 12 years ago

10.1186/1472-6807-7-10

Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
Cited by: 70
Author(s): D.J. Ferraro, Eric N. Brown, Chung Huang Yu, Rebecca E. Parales, David T. Gibson, S. Ramaswamy
Software Mentions: 2
Published: over 19 years ago

10.7717/peerj.8102

The Polycyclic Aromatic Hydrocarbon (PAH) degradation activities and genome analysis of a novel strainStenotrophomonas sp. Pemsol isolated from Mexico
Cited by: 23
Author(s): Temidayo Oluyomi Elufisan, Isabel Cristina Rodríguez-Luna, Omotayo Opemipo Oyedara, Alejandro Sánchez-Varela, Armando Hernández-Mendoza, Edgar Dantán-González, Alma D. Paz-González, Kashif Muhammad, Gildardo Rivera, Miguel Ángel Villalobos-López, Xianwu Guo
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.8701

Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya
Cited by: 33
Author(s): Joseph Gichuhi, Sevgan Subramanian, Fathiya M. Khamis, J. van den Berg, Hannalene du Plessis, Sunday Ekesi, Jeremy K. Herren
Software Mentions: 2
Published: over 6 years ago

10.1038/s41388-018-0530-7

Acetylation of AGO2 promotes cancer progression by increasing oncogenic miR-19b biogenesis
Cited by: 50
Author(s): Hailong Zhang, Yanli Wang, Jinzhuo Dou, Yanmin Guo, Jianfeng He, Lian Li, Xiaojia Liu, Ran Chen, Rong Deng, Jian Huang, Ruiyu Xie, Xian Zhao, Jianxiu Yu
Software Mentions: 2
Published: about 8 years ago

10.1186/s12859-016-1059-9

Reduction, alignment and visualisation of large diverse sequence families
Cited by: 4
Author(s): William R. Taylor
Software Mentions: 2
Published: over 10 years ago

10.1111/jipb.12742

Involvement of sweet pepperCaLOX2in jasmonate-dependent induced defence against Western flower thrips
Cited by: 28
Author(s): Sandeep J. Sarde, Klaas Bouwmeester, Jhon Venegas‐Molina, Anja David, Wilhelm Boland, Marcel Dicke
Software Mentions: 2
Published: over 7 years ago

10.1186/s13062-016-0144-3

Compartmentalization in PVC super-phylum: evolution and impact
Cited by: 15
Author(s): Sandrine Pinos, Pierre Pontarotti, Didier Raoult, Jean-Pierre Baudoin, Isabelle Pagnier
Software Mentions: 2
Published: about 10 years ago

10.7717/peerj.2496

Highly divergent mussel lineages in isolated Indonesian marine lakes
Cited by: 18
Author(s): Leontine E. Becking, Christiaan A. de Leeuw, Bram Knegt, Diede L. Maas, Nicole J. de Voogd, Abdunnur Abdunnur, Iwan Suyatna, Katja T. C. A. Peijnenburg
Software Mentions: 2
Published: about 10 years ago

10.7717/peerj.7789

Morphological and molecular barcode analysis of the medicinal tree Mimusops coriacea (A.DC.) Miq. collected in Ecuador
Cited by: 6
Author(s): Katherine Bustamante, Efrén Santos-Ordóñez, Migdália Miranda Martinez, Ricardo Pacheco, Yamilet Gutiérrez, Ramón Scull
Software Mentions: 2
Published: about 7 years ago

10.1186/1745-6150-1-12

Cited by: 10
Author(s): Dimitris Papamichail, Nicholas Delihas
Software Mentions: 2
Published: almost 21 years ago

10.7554/eLife.40818

Mutant huntingtin enhances activation of dendritic Kv4 K+ channels in striatal spiny projection neurons
Cited by: 23
Author(s): Luis Carrillo-Reid, Michelle Day, Zhong Xie, Alexandria E Melendez, Jyothisri Kondapalli, Joshua L. Plotkin, David L. Wokosin, Yu Chen, Geraldine J. Kress, Michael G. Kaplitt, Ema Ilijić, Josefina Guzmán, C. Savio Chan, D. James Surmeier
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.2002

A low dose of an organophosphate insecticide causes dysbiosis and sex-dependent responses in the intestinal microbiota of the Japanese quail (Coturnix japonica)
Cited by: 15
Author(s): Eduardo Crisol‐Martínez, Laura T. Moreno-Moyano, Ngare Wilkinson, Tanka P. Prasai, Philip H. Brown, Robert J. Moore, Dragana Stanley
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.00569

The genome sequence of the colonial chordate, Botryllus schlosseri
Cited by: 209
Author(s): Ayelet Voskoboynik, Norma Neff, Debashis Sahoo, Aaron M. Newman, Dmitry Pushkarev, Winston Koh, Benedetto Passarelli, Hai-Wei Fan, Gary L. Mantalas, Karla J. Palmeri, Katherine J. Ishizuka, Carmela Gissi, Francesca Griggio, Rachel Ben‐Shlomo, Daniel Corey, Lolita Penland, Richard Allen White, Irving L. Weissman, Stephen R. Quake
Software Mentions: 2
Published: over 13 years ago

Projects: pypi: blast

Enhanced Analysis

Science Score: 65/100

Bonuses:

Penalties:

Papers Mentioning blast 1,819