pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/s13062-016-0144-3

Compartmentalization in PVC super-phylum: evolution and impact
Cited by: 15
Author(s): Sandrine Pinos, Pierre Pontarotti, Didier Raoult, Jean-Pierre Baudoin, Isabelle Pagnier
Software Mentions: 2
Published: about 10 years ago

10.3390/genes10030219

DNA Methylation Patterns in the Round Goby Hypothalamus Support an On-The-Spot Decision Scenario for Territorial Behavior
Cited by: 10
Author(s): Vincent Somerville, Michaela Schwaiger, Philipp Hirsch, Jean‐Claude Walser, Karen Bussmann, Alexandra Weyrich, Patricia Burkhardt‐Holm, Irene Adrian‐Kalchhauser
Software Mentions: 2
Published: over 7 years ago

10.3390/genes9100510

Genome-Wide Identification and Characterization of wALOG Family Genes Involved in Branch Meristem Development of Branching Head Wheat
Cited by: 6
Author(s): Wenzhi Nan, Shandang Shi, Diddugodage Chamila Jeewani, Li Quan, Song Xue, Zhonghua Wang
Software Mentions: 2
Published: about 8 years ago

10.3390/genes10020081

Complete Genome Sequence Analysis and Characterization of Selected Iron Regulation Genes of Pasteurella Multocida Serotype A Strain PMTB2.1
Cited by: 7
Author(s): Shagufta Jabeen, Huan Yong Yap, Faez Firdaus Jesse Abdullah, Zunita Zakaria, Nurulfiza Mat Isa, Yung-Chie Tan, Yap S Joo, Dilan Amila Satharasinghe, Abdul Rahman Omar
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12870-021-02850-9

Reduced expression of a subunit gene of sucrose non-fermenting 1 related kinase, PpSnRK1βγ, confers flat fruit abortion in peach by regulating sugar and starch metabolism
Cited by: 1
Author(s): Jian Guo, Ke Cao, Jia‐Long Yao, Cecilia Deng, Yong Li, Guoqiang Zhu, Weichao Fang, Chang Wen Chen, Xinwei Wang, Jinlong Wu, Wen‐Wu Guo, Lirong Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-015-1737-4

Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress
Cited by: 22
Author(s): Valeria Wallace-Salinas, Daniel P. Brink, Dag Ahrén, Marie-Françoise Gorwa-Grauslund
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2164-12-283

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing
Cited by: 64
Author(s): Anna W. Santure, Jacob Gratten, Jim A. Mossman, Ben C. Sheldon, Jon Slate
Software Mentions: 2
Published: over 15 years ago

10.1534/g3.120.401205

Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (Betta splendens) in a University Master’s Course
Cited by: 11
Author(s): Stefan Prost, Malte Petersen, Martin Grethlein, Sarah Joy Hahn, Nina Kuschik-Maczollek, Martyna Ewa Olesiuk, Jan-Olaf Reschke, Tamara Elke Schmey, Caroline Zimmer, Deepak Kumar Gupta, Tilman Schell, Raphael T. F. Coimbra, Jordi de Raad, Fritjof Lammers, Sven Winter, Axel Janke
Software Mentions: 2
Published: over 6 years ago

10.1186/1472-6807-7-10

Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
Cited by: 70
Author(s): D.J. Ferraro, Eric N. Brown, Chung Huang Yu, Rebecca E. Parales, David T. Gibson, S. Ramaswamy
Software Mentions: 2
Published: over 19 years ago

10.1186/s12864-016-3266-1

Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii
Cited by: 31
Author(s): Yan Zhu, Longxian Chen, Chengjun Zhang, Pei Hao, Xinyun Jing, Xuan Li
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13104-015-1683-x

Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates
Cited by: 1
Author(s): Mbaye Tine
Software Mentions: 2
Published: almost 11 years ago

10.1534/g3.116.038448

Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi
Cited by: 21
Author(s): Pierre‐Yves Dupont, Murray P. Cox
Software Mentions: 2
Published: over 9 years ago

10.1534/g3.117.043083

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size
Cited by: 20
Author(s): David L. Oldeschulte, Yvette A. Halley, Miranda Wilson, Eric K. Bhattarai, Wesley Brashear, Joshua A. Hill, Richard P. Metz, Charles D. Johnson, Dale Rollins, Markus J. Peterson, Derek M. Bickhart, Jared E. Decker, John F. Sewell, Christopher M. Seabury
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2164-13-621

Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major
Cited by: 37
Author(s): Vijayendran Gowri, Indira Ghosh, Amit Sharma, Rentala Madhubala
Software Mentions: 2
Published: almost 14 years ago

10.1186/1753-6561-3-S4-S14

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
Cited by: 11
Author(s): Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornshøj, Magali SanCristobal, Pierre Mormède, Dirk-Jan de Koning
Software Mentions: 2
Published: over 17 years ago

10.1186/s12983-017-0225-x

Comparative genomics analyses of alpha-keratins reveal insights into evolutionary adaptation of marine mammals
Cited by: 17
Author(s): Xiaohui Sun, Zhang Zepeng, Yingying Sun, Jing Li, Shixia Xu, Guang Yang
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-019-1785-z

Development and characterisation of interspecific hybrid lines with genome-wide introgressions from Triticum timopheevii in a hexaploid wheat background
Cited by: 21
Author(s): Uma Devi, Surbhi Grewal, Caiyun Yang, Stella Hubbart‐Edwards, Duncan Scholefield, Stephen Ashling, Amanda Burridge, Ian P. King, Julie King
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-014-1205-6

Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes
Cited by: 39
Author(s): Jan M. Meyer, Christian Rödelsperger, Karsten Eichholz, Urban Tillmann, Allan Cembella, Angela McGaughran, Uwe John
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12870-020-2239-3

Genome-wide identification and analysis of B-BOX gene family in grapevine reveal its potential functions in berry development
Cited by: 40
Author(s): Hongru Wei, Peipei Wang, Jianqing Chen, Changjun Li, Yongzhang Wang, Yuan Yang, Jinggui Fang, Xiangpeng Leng
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms18081734

Genome-Wide Organization and Expression Profiling of the SBP-Box Gene Family in Chinese Jujube (Ziziphus jujuba Mill.)
Cited by: 25
Author(s): Shuang Song, Heng Zhou, Songbai Sheng, Mengshu Cao, Yingyue Li, Xiaoming Pang
Software Mentions: 2
Published: about 9 years ago

10.1534/g3.115.018382

Identification of Reproduction-Related Gene Polymorphisms Using Whole Transcriptome Sequencing in the Large White Pig Population
Cited by: 30
Author(s): Daniel Fischer, Asta Laiho, Attila Gyenesei
Software Mentions: 2
Published: over 11 years ago

10.1186/s12870-015-0587-1

Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae
Cited by: 65
Author(s): Raimi Mohamed Redwan, Akzam Saidin, Vijay Kumar Subbiah
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2164-9-254

Exploiting orthologue diversity for systematic detection of gain-of-function phenotypes
Cited by: 5
Author(s): Marialuisa Martelli, Claudio Isella, Alessia Mira, Li‐Chen Fu, Daniela Cantarella, Enzo Medico
Software Mentions: 2
Published: over 18 years ago

10.3389/fpls.2016.00488

Genetic Adaptation of Giant Lobelias (Lobelia aberdarica and Lobelia telekii) to Different Altitudes in East African Mountains
Cited by: 8
Author(s): Shu Ying Zhao, Ling Yun Chen, John K. Muchuku, Guang Hu, Qing Feng Wang
Software Mentions: 2
Published: over 10 years ago

10.1186/s12870-018-1594-9

Transciptome profiling at early infection of Elaeis guineensis by Ganoderma boninense provides novel insights on fungal transition from biotrophic to necrotrophic phase
Cited by: 27
Author(s): Mohammad Nazri Abdul Bahari, Nurshafika Mohd Sakeh, Siti Nor Akmar Abdullah, Redzyque Ramza Ramli, Saeid Kadkhodaei
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2020.00156

A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping
Cited by: 6
Author(s): Daniela Holtgräwe, Thomas Rosleff Soerensen, Ludger Hausmann, Boas Pucker, Prisca Viehöver, Reinhard Töpfer, Bernd Weißhaar
Software Mentions: 2
Published: over 6 years ago

10.1099/acmi.0.000103

First hybrid complete genome of Aeromonas veronii reveals chromosome-mediated novel structural variant mcr-3.30 from a human clinical sample
Cited by: 12
Author(s): Naveen Kumar Devanga Ragupathi, Dhiviya Prabaa Muthuirulandi Sethuvel, Shalini Anandan, Dhivya Murugan, Kalaiarasi Asokan, Ramya Gajaraj Neethi Mohan, Karthick Vasudevan, Thirumal Kumar D, George Priya Doss C, Balaji Veeraraghavan
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2229-14-99

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
Cited by: 204
Author(s): Nicola Vitulo, Claudio Forcato, Elisa Corteggiani Carpinelli, Andrea Telatin, Davide Campagna, Michela D’Angelo, Rosanna Zimbello, Massimiliano Corso, Alessandro Vannozzi, Claudio Bonghi, Margherita Lucchin, Giorgio Valle
Software Mentions: 2
Published: over 12 years ago

10.3389/fpls.2017.01519

Identification and Expression Profile of CYPome in Perennial Ryegrass and Tall Fescue in Response to Temperature Stress
Cited by: 29
Author(s): Tao Xiang, Mingxiu Wang, Yan Dai, Yan Wang, Yan-Fen Fan, Ping Mao, Xinrong Ma
Software Mentions: 2
Published: almost 9 years ago

10.1099/mgen.0.000196

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Cited by: 162
Author(s): Margaret M C Lam, Ryan R. Wick, Kelly L. Wyres, Claire L. Gorrie, Louise M. Judd, Adam Jenney, Sylvain Brisse, Kathryn E. Holt
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2019.00983

Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves
Cited by: 29
Author(s): Kai Zou, Xueduan Liu, Zhenmin Du, Qin Yang, Shaodong Fu, Delong Meng, Wen-Qi Chang, Rui Li, Huaqun Yin, Yili Liang
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2021.625520

De novo Transcriptome Assembly and Comparative Analysis Highlight the Primary Mechanism Regulating the Response to Selenium Stimuli in Oats (Avena sativa L.)
Cited by: 2
Author(s): Tao Liu, Xiaoting Liu, Rangrang Zhou, Hong Chen, Huaigang Zhang, Bo Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.714305

Insights Into the Molecular Evolution of AT-Hook Motif Nuclear Localization Genes in Brassica napus
Cited by: 7
Author(s): Weimeng Zhang, Dongdong Fang, Xiuzhu Cheng, Jun Cao, Xiao‐Li Tan
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.570915

Expression of LhFT1, the Flowering Inducer of Asiatic Hybrid Lily, in the Bulb Scales
Cited by: 5
Author(s): Kana Kurokawa, Junya Kobayashi, Keiichirou Nemoto, Akira Nozawa, Tatsuya Sawasaki, Takashi Nakatsuka, Masumi Yamagishi
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-019-1882-z

Ethylene-mediated improvement in sucrose accumulation in ripening sugarcane involves increased sink strength
Cited by: 33
Author(s): Zhongliang Chen, Cui-Xian Qin, Miao Wang, Fang Liao, Qing Liao, Xihui Liu, Yang‐Rui Li, Prakash Lakshmanan, M. I. E. Long, Dongliang Huang
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-021-08001-6

Revelation of candidate genes and molecular mechanism of reproductive seasonality in female rohu (Labeo rohita Ham.) by RNA sequencing
Cited by: 2
Author(s): Sarika Jaiswal, Samiran Nandi, Mir Asif Iquebal, Rahul Singh Jasrotia, Swagat Kumar Patra, Gayatri Mishra, Uday Kumar Udit, Dinesh Kumar Sahu, U. B. Angadi, Prem Kumar Meher, P. Routray, Jitendra Kumar Sundaray, Deepti Verma, Paramananda Das, P. Jayasankar, Anil Rai, Dinesh Kumar
Software Mentions: 2
Published: about 5 years ago

10.1186/s12870-018-1525-9

Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr
Cited by: 7
Author(s): Yi Gan, Yu Song, Yadong Chen, Hongbo Liu, Dongdong Yang, Qian-Yu XU, Zhifu Zheng
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2021.642631

Epigenetic Variability Among Saffron Crocus (Crocus sativus L.) Accessions Characterized by Different Phenotypes
Cited by: 13
Author(s): Matteo Busconi, Elisabeth Wischnitzki, Marcello Del Corvo, Licia Colli, Giovanna Soffritti, Lorenzo Stagnati, Silvia Fluch, Eva Maria Sehr, Marcelino de los Mozos Pascual, José Antonio Fernández
Software Mentions: 2
Published: over 5 years ago

10.1099/mgen.0.000279

Domestication of Campylobacter jejuni NCTC 11168
Cited by: 21
Author(s): Ben Pascoe, Lisa Williams, Jessica K. Calland, Guillaume Méric, Matthew D. Hitchings, Myles Dyer, Joseph Ryder, Sophie Shaw, Bruno Silvester Lopes, Cosmin Chintoan-Uta, Elaine Allan, Ana Maria Centola Vidal, Catherine Fearnley, Paul Everest, Justin A. Pachebat, Tristan A Cogan, Mark P. Stevens, T. J. Humphrey, Thomas S. Wilkinson, Alison J. Cody, Frances M. Colles, Keith A. Jolley, Martin C. J. Maiden, Norval James Colin Strachan, Bruce M. Pearson, Dennis Linton, Brendan W. Wren, Julian Parkhill, David J. Kelly, Arnoud H. M. van Vliet, Ken J. Forbes, Samuel K. Sheppard
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-019-5545-0

An insight into the sialotranscriptome and virome of Amazonian anophelines
Cited by: 21
Author(s): Vera Margarete Scarpassa, Humberto Julio Debat, Ronildo Baiatone Alencar, José Ferreira Saraiva, Eric Calvo, Bruno Arcà, José M. C. Ribeiro
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2016.02058

A Comprehensive Prescription for Plant miRNA Identification
Cited by: 38
Author(s): Burcu Alptekin, Bala Anı Akpınar, Hikmet Budak
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2015.01086

De novo Transcriptome Assembly of a Chinese Locoweed (Oxytropis ochrocephala) Species Provides Insights into Genes Associated with Drought, Salinity, and Cold Tolerance
Cited by: 18
Author(s): Wei He, Zhuang Hu, Yànpíng Fù, Linwei Guo, Bin Guo, Lizhu Guo, Xiuhong Zhang, Yahui Wei
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12870-015-0636-9

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil
Cited by: 21
Author(s): Emmanuel González, Nicholas J. B. Brereton, Julie Marleau, Werther Guidi Nissim, Michel Labrecque, Frédéric E. Pitre, Simon Joly
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2148-7-71

Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species
Cited by: 59
Author(s): Radhey S. Gupta, Emily Lorenzini
Software Mentions: 2
Published: almost 20 years ago

10.3389/fphys.2020.00417

Transcriptome Analysis of Ophraella communa Male Reproductive Tract in Indirect Response to Elevated CO2 and Heat Wave
Cited by: 2
Author(s): Xuyuan Gao, Zhonghuan Tian, Yan Zhang, Guangmei Chen, Chunzi Ma, Shaowei Cui, Yongyue Lu, Zhongshi Zhou
Software Mentions: 2
Published: over 6 years ago

10.3389/fphys.2016.00096

Characterization of a Digestive α-Amylase in the Midgut of Pieris brassicae L. (Lepidoptera: Pieridae)
Cited by: 12
Author(s): Ali Sharifloo, Arash Zibaee, Jalal Jalali Sendi, Khalil Talebi Jahroumi
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2017.00594

De novo Sequencing and Transcriptome Analysis Reveal Key Genes Regulating Steroid Metabolism in Leaves, Roots, Adventitious Roots and Calli of Periploca sepium Bunge
Cited by: 7
Author(s): Jian Zhang, Xinglin Li, Fuping Lu, Shan-Ying Wang, Yunhe An, Xiaoxing Su, Xiankuan Li, Lin Ma, Han Guang-jian
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2021.712254

Identification and Characterization of Secondary Wall-Associated NAC Genes and Their Involvement in Hormonal Responses in Tobacco (Nicotiana tabacum)
Cited by: 5
Author(s): Na Xu, Lin Meng, Lin Song, Xiaoxu Li, Shanshan Du, Fengqin Hu, Yuanda Lv, Wenjing Song
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.00423

Halotolerant Exiguobacterium profundum PHM11 Tolerate Salinity by Accumulating L-Proline and Fine-Tuning Gene Expression Profiles of Related Metabolic Pathways
Cited by: 21
Author(s): Vikas Patel, R. P. Srivastava, Anjney Sharma, Anchal Srivastava, Surinder Singh, Alok Kumar Srivastava, Prem Lal Kashyap, Hillol Chakdar, Kurinji Pandiyan, Alok Kalra, Anil Kumar Saxena
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2015.01044

Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function
Cited by: 22
Author(s): William P. Inskeep, Zackary J. Jay, Richard E. Macur, Scott Clingenpeel, Aaron Tenney, David Lovalvo, Jacob P. Beam, Mark A. Kozubal, Wayne C. Shanks, Lisa A. Morgan, Jinjun Kan, Yuri A. Gorby, Shibu Yooseph, Kenneth H. Nealson
Software Mentions: 2
Published: about 11 years ago

10.1186/s12870-017-0983-9

Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s
Cited by: 47
Author(s): LI Xu-yan, Xin Xie, Ji Li, Yuhai Cui, Yanming Hou, Lulu Zhai, Xiao Wang, Yanli Fu, Ranran Liu, Shaomin Bian
Software Mentions: 2
Published: almost 10 years ago

10.3389/fneur.2018.00465

Environmental Enrichment Upregulates Striatal Synaptic Vesicle-Associated Proteins and Improves Motor Function
Cited by: 6
Author(s): Suk Young Song, Minji Chae, Ji Hea Yu, Min Young Lee, Soonil Pyo, Yeseul Shin, Ahreum Baek, Jung Won Park, Eun Sook Park, Ja Young Choi, Sung Rae Cho
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2014.00356

Unravelling the proteomic profile of rice meiocytes during early meiosis
Cited by: 22
Author(s): Melania Collado-Romero, Enriqueta Alós, Pilar Prieto
Software Mentions: 2
Published: over 12 years ago

10.3390/v13030481

Olea Europaea Geminivirus: A Novel Bipartite Geminivirid Infecting Olive Trees
Cited by: 13
Author(s): Michela Chiumenti, C. Greco, A. De Stradis, Giuliana Loconsole, Vincenzo Cavalieri, Giuseppe Altamura, Stefania Zicca, P. Saldarelli, María Saponari
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-213X-4-11

Regulation of signaling genes by TGFβ during entry into dauer diapause in C. elegans
Cited by: 74
Author(s): Tao Liu, Karen K. Zimmerman, Garth I. Patterson
Software Mentions: 2
Published: about 22 years ago

10.3390/v13020193

Investigating the Diversity and Host Range of Novel Parvoviruses from North American Ducks Using Epidemiology, Phylogenetics, Genome Structure, and Codon Usage Analysis
Cited by: 10
Author(s): Marta Canuti, Joost T. P. Verhoeven, Hannah J. Munro, Sheena Roul, Davor Ojkić, Gregory J. Robertson, Hugh Whitney, Suzanne C. Dufour, Andrew S. Lang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-021-03024-3

Genome-wide identification and functional analysis of U-box E3 ubiquitin ligases gene family related to drought stress response in Chinese white pear (Pyrus bretschneideri)
Cited by: 18
Author(s): Chunmeng Wang, Bobo Song, Yuqin Dai, Shaoling Zhang, Xiaosan Huang
Software Mentions: 2
Published: over 5 years ago

10.3390/v11050419

Revisiting the Role of Transcription Factors in Coordinating the Defense Response Against Citrus Bark Cracking Viroid Infection in Commercial Hop (Humulus Lupulus L.)
Cited by: 20
Author(s): Vishnu Sukumari Nath, Ajay Kumar Mishra, Atul Kumar, J. Matoušek, Jernej Jakše
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.601839

Identification of New Helicobacter pylori Subpopulations in Native Americans and Mestizos From Peru
Cited by: 6
Author(s): Andrés Julián Gutiérrez-Escobar, Billie Velapatiño, Víctor Borda, Charles S. Rabkin, Eduardo Tarazona‐Santos, Lilia Cabrera, Jaime Cok, Catherine C. Hooper, M Helena Jahuira Arias, Phabiola Herrera, Mehwish Noureen, Difei Wang, Judith Romero–Gallo, Bao Tran, Richard M. Peek, Douglas E. Berg, Robert H. Gilman, M. Constanza Camargo
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2016.00639

Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion
Cited by: 27
Author(s): Joshua T. Cooper, Geoffrey A. Sinclair, Boris Wawrik
Software Mentions: 2
Published: over 10 years ago

10.1111/1462-2920.13036

Closing the gaps on the viral photosystem‐ <scp>I</scp> psa <scp>DCAB</scp> gene organization
Cited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: about 11 years ago

10.1111/j.1462-2920.2008.01667.x

The Cry48Aa-Cry49Aa binary toxin fromBacillus sphaericusexhibits highly restricted target specificity
Cited by: 37
Author(s): Gareth Wyn Jones, Margaret C. Wirth, R. G. Monnerat, Colin Berry
Software Mentions: 2
Published: about 18 years ago

10.3389/fmicb.2017.01772

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Cited by: 21
Author(s): Sergio Triana, Hans de Cock, Robin A. Ohm, Giovanna Danies, Han A. B. Wösten, Silvia Restrepo, Andrés Fernando González Barrios, Adriana Celis
Software Mentions: 2
Published: about 9 years ago

10.1080/21505594.2021.1878743

The transcription factor Ndt80 is a repressor of Candida parapsilosis virulence attributes
Cited by: 5
Author(s): Joana Branco, Cláudia Martins-Cruz, Lisa Rodrigues, Raquel M. Silva, Nuno Araújo‐Gomes, Teresa Gonçalves, Isabel M. Miranda, Acácio G. Rodrigues
Software Mentions: 2
Published: over 5 years ago

10.1080/21505594.2017.1384895

Galleria mellonella as an infection model to investigate virulence of Vibrio parahaemolyticus
Cited by: 38
Author(s): Sariqa Wagley, Richard Borne, Jamie Harrison, Craig Baker‐Austin, Donatella Ottaviani, Francesca Leoni, Varaporn Vuddhakul, Richard W. Titball
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2164-15-1022

Genome-wide mapping of matrix attachment regions in Drosophila melanogaster
Cited by: 27
Author(s): Rashmi U. Pathak, Arumugam Srinivasan, Rakesh K. Mishra
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2020.584589

Characterization of a Novel Acyl-ACP Δ9 Desaturase Gene Responsible for Palmitoleic Acid Accumulation in a Diatom Phaeodactylum tricornutum
Cited by: 7
Author(s): Baoling Liu, Yan Sun, Hang Wei, Xiaodan Wang, Jinai Xue, Ronghua Ma, Xiaoyun Jia, Runzhi Li
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.00947

Molecular Characterization and Comparative Genomic Analysis of vB_PaeP_YA3, a Novel Temperate Bacteriophage of Pseudomonas aeruginosa
Cited by: 5
Author(s): Xinyan Yu, Jianping Xu, Yu Gu, Ruiyang Zhang, Yefei Zhu, Xiaoqiu Liu
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2017.01653

Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly
Cited by: 18
Author(s): H Busra Cagirici, Sezgi Biyiklioglu, Hikmet Budak
Software Mentions: 2
Published: about 9 years ago

10.1002/ece3.2028

Population genomics of local adaptation versus speciation in coral reef fishes ( Hypoplectrus spp, Serranidae)
Cited by: 31
Author(s): Sophie Picq, W. Owen McMillan, Oscar Puebla
Software Mentions: 2
Published: over 10 years ago

10.1186/s12870-019-1908-6

Time-series transcriptome provides insights into the gene regulation network involved in the volatile terpenoid metabolism during the flower development of lavender
Cited by: 32
Author(s): Hui Li, Jingrui Li, Yanmei Dong, Haiping Hao, Zhengyi Ling, Hongtong Bai, Huafang Wang, Hongxia Cui, Lei Shi
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.5708

Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze River
Cited by: 9
Author(s): Fangyuan Cheng, Qian Wang, Pierpaolo Maisano Delser, Chenhong Li
Software Mentions: 2
Published: about 7 years ago

10.1016/j.csbj.2017.01.002

Deep Assessment of Genomic Diversity in Cassava for Herbicide Tolerance and Starch Biosynthesis
Cited by: 14
Author(s): Jorge Duitama, Lina Kafuri, Daniel Tello, Ana Marı́a Leiva, Bernhard J. Hofinger, Sneha Datta, Zaida Lentini, Ericson Aranzales, Bradley J. Till, Hernán Ceballos
Software Mentions: 2
Published: almost 10 years ago

10.1186/1743-422X-2-60

HBx M130K and V131I (T-A) mutations in HBV genotype F during a follow-up study in chronic carriers
Cited by: 27
Author(s): Bernal León, Lizeth Taylor, M C Vargas, Ronald B. Luftig, Federico J. Albertazzi, Libia Herrero, Kirsten A. Visoná
Software Mentions: 2
Published: over 21 years ago

10.1080/22221751.2020.1773745

Genetic cluster analysis of SARS-CoV-2 and the identification of those responsible for the major outbreaks in various countries
Cited by: 45
Author(s): Xuemei Yang, Ning Dong, Edward Wai Chi Chan, Sheng Chen
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0103160

Characterization of Hepatitis C Virus Genotypes by Direct Sequencing of HCV 5′UTR Region of Isolates from Saudi Arabia
Cited by: 13
Author(s): Medhat K. Shier, Mohammad S. El-Wetidy, Hebatallah H. Ali, Mohammad M. Al‐Qattan
Software Mentions: 2
Published: about 12 years ago

10.15252/msb.202110302

Spurious regulatory connections dictate the expression‐fitness landscape of translation factors
Cited by: 6
Author(s): Jean-Benoît Lalanne, Darren J. Parker, Gene-Wei Li
Software Mentions: 2
Published: over 5 years ago

10.1155/2019/3780245

Iterative Variable Gene Discovery from Whole Genome Sequencing with a Bootstrapped Multiresolution Algorithm
Cited by: 1
Author(s): David N. Olivieri, Francisco Gambón-Deza
Software Mentions: 2
Published: over 7 years ago

10.1080/22221751.2018.1563455

Detection of human parvovirus 4 DNA in the patients with acute encephalitis syndrome during seasonal outbreaks of the disease in Gorakhpur, India
Cited by: 6
Author(s): Vidya A. Arankalle, Navin Srivastava, K. P. Kushwaha, Agnibha Sen, Ashwini Y. Ramdasi, Priyanka Patel, Sumeet Kuthe, Bangari Haldipur, Gajanan N. Sakpal, Kavita S. Lole, Nilesh Ingle
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-015-2014-2

Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development
Cited by: 89
Author(s): Chunying Kang, Zhongchi Liu
Software Mentions: 2
Published: about 11 years ago

10.1111/mpp.12346

Identification of pathogenicity‐related genes in Fusarium oxysporum f. sp. cepae
Cited by: 91
Author(s): Andrew Taylor, Viktória Vágány, Alison C. Jackson, Richard J. Harrison, Alessandro Rainoni, John P. Clarkson
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0000169

Vertebrate Vitellogenin Gene Duplication in Relation to the “3R Hypothesis”: Correlation to the Pelagic Egg and the Oceanic Radiation of Teleosts
Cited by: 181
Author(s): Roderick Nigel Finn, Børge André Kristoffersen
Software Mentions: 2
Published: almost 20 years ago

10.1371/journal.pone.0179027

Transcriptome profiling analysis reveals the role of silique in controlling seed oil content in Brassica napus
Cited by: 7
Author(s): Ke-Lin Huang, Zhang Mei-li, Guangjing Ma, Huan Wu, Xiaoming Wu, Feng Ren, Xuebao Li
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0208735

Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016
Cited by: 8
Author(s): Vaishnavi Pattabiraman, Lee S. Katz, Jessica C. Chen, Andre McCullough, Eija Trees
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0099492

A 14.7 kDa Protein from Francisella tularensis subsp. novicida (Named FTN_1133), Involved in the Response to Oxidative Stress Induced by Organic Peroxides, Is Not Endowed with Thiol-Dependent Peroxidase Activity
Cited by: 7
Author(s): Diogo de Abreu Meireles, Thiago Gerônimo Pires Alegria, Simone Alves, Carla Rani Rocha Arantes, Luís Eduardo Soares Netto
Software Mentions: 2
Published: over 12 years ago

10.1111/j.1365-2958.2007.05753.x

Gene encoding a deubiquitinating enzyme is mutated in artesunate‐ and chloroquine‐resistant rodent malaria parasites§
Cited by: 152
Author(s): Paul Hunt, Ana Afonso, Alison M. Creasey, Richard Culleton, Amar Bir Singh Sidhu, John G. Logan, Stephanie G. Valderramos, I.W. McNae, Sandra Cheesman, Virgı́lio do Rosário, Richard Carter, David A. Fidock, Pedro Vitor Lemos Cravo
Software Mentions: 2
Published: over 19 years ago

10.1186/s12866-017-1049-8

Trichoderma virens β-glucosidase I (BGLI) gene; expression in Saccharomyces cerevisiae including docking and molecular dynamics studies
Cited by: 10
Author(s): Gammadde Hewa Ishan Maduka Wickramasinghe, Samith Rathnayake, N.V. Chandrasekharan, Mahindagoda Siril Samantha Weerasinghe, Ravindra Lakshman Chundananda Wijesundera, W.S.S. Wijesundera
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0150719

REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence Reads
Cited by: 49
Author(s): Chong Chu, Rasmus Nielsen, Yufeng Wu
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0175116

Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays
Cited by: 39
Author(s): Lívia Costa de Oliveira, Tessália Diniz Luerce Saraiva, Wanderson M. Silva, Ulisses de Pádua Pereira, Bruno C. Campos, Leandro de Jesus Benevides, Flávia Souza Rocha, Henrique César Pereira Figueiredo, Vasco Azevedo, Siomar C. Soares
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0111655

Unique Gene Expression Profile of the Proliferating Xenopus Tadpole Tail Blastema Cells Deciphered by RNA-Sequencing Analysis
Cited by: 18
Author(s): Hiroshi Tsujioka, Takekazu Kunieda, Yuki Katou, Katsuhiko Shirahige, Takeo Kubo
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0056093

Rapid Focused Sequencing: A Multiplexed Assay for Simultaneous Detection and Strain Typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis
Cited by: 12
Author(s): Rosemary S. Turingan, Hans-Ulrich Thomann, Anna Zolotova, Eugene Tan, Richard F. Selden
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0076095

Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia
Cited by: 20
Author(s): Jan Šlapeta, Marjorie C. Linares
Software Mentions: 2
Published: about 13 years ago

10.1111/j.1462-2920.2010.02193.x

Ironing out the wrinkles in the rare biosphere through improved OTU clustering
Cited by: 1,150
Author(s): Susan M. Huse, David B. Mark Welch, Hilary G. Morrison, Mitchell L. Sogin
Software Mentions: 2
Published: over 16 years ago

10.3389/fpls.2016.01374

Genomic Dissection and Expression Profiling Revealed Functional Divergence in Triticum aestivum Leucine Rich Repeat Receptor Like Kinases (TaLRRKs)
Cited by: 56
Author(s): . Shumayla, Shailesh Sharma, Rohit Kumar, Venugopal Mendu, Kashmir Singh, Santosh Kumar Upadhyay
Software Mentions: 2
Published: about 10 years ago

10.3390/genes8120385

High-Throughput Sequencing of Small RNA Transcriptomes in Maize Kernel Identifies miRNAs Involved in Embryo and Endosperm Development
Cited by: 15
Author(s): Lijuan Xing, Ming Zhu, Min Zhang, Wenzong Li, Haiyang Jiang, Junjie Zou, Lei Wang, Miaoyun Xu
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0002103

The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria
Cited by: 128
Author(s): Sara H. Thomas, Ryan D. Wagner, Adrián K. Arakaki, Jeffrey Skolnick, John R. Kirby, Lawrence J. Shimkets, Robert A. Sanford, Frank E. Löffler
Software Mentions: 2
Published: over 18 years ago

10.1186/1471-2164-14-657

Targets of light signalling in Trichoderma reesei
Cited by: 67
Author(s): Doris Tisch, Monika Schmoll
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0142002

dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42
Cited by: 25
Author(s): Bin Fan, Lei Li, Yapeng Chao, Konrad U. Förstner, Jörg Vogel, Rainer Borriss, Xiao‐Qin Wu
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0194071

Candidate genes for first flower node identified in pepper using combined SLAF-seq and BSA
Cited by: 20
Author(s): Xiaofen Zhang, Guoyun Wang, Bin Chen, Heshan Du, Fenglan Zhang, Haiying Zhang, Qian Wang, Sansheng Geng
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0019328

Identification of Hyaloperonospora arabidopsidis Transcript Sequences Expressed during Infection Reveals Isolate-Specific Effectors
Cited by: 57
Author(s): Adriana Cabral, Joost H. M. Stassen, Michael Seidl, Jaqueline Bautor, Jane E. Parker, Guido Van den Ackerveken
Software Mentions: 2
Published: over 15 years ago

Projects: pypi: blast

Enhanced Analysis

Science Score: 65/100

Bonuses:

Penalties:

Papers Mentioning blast 1,819