Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: blast

https://packages.ecosyste.ms/registries/pypi.org/packages/blast

a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
3 versions
Latest release: over 12 years ago
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Papers Mentioning blast 1,819

10.1371/journal.pone.0023549
Characterization and Comparative Profiling of MiRNA Transcriptomes in Bighead Carp and Silver Carp
Cited by: 59
Author(s): Wei Chi, Chaobo Tong, Xiangchao Gan, Shunping He
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0195702
A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence
Cited by: 16
Author(s): Nicholas Delihas
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0251305
Evaluation of the S-locus in Prunus domestica, characterization, phylogeny and 3D modelling
Cited by: 6
Author(s): Angel V. Fernández i Martí, Sarah Castro, Theodore M. DeJong, Richard S. Dodd
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0206154
In silico identification of conserved miRNAs and their selective target gene prediction in indicine (Bos indicus) cattle
Cited by: 11
Author(s): Quratulain Hanif, Muhammad Farooq, Imran Amin, Shahid Mansoor, Yi Zhang, Qaiser M. Khan
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0152147
Odorant Receptors of the New Zealand Endemic Leafroller Moth Species Planotortrix octo and P. excessana
Cited by: 14
Author(s): Bernd Steinwender, Amali H. Thrimawithana, Ross N. Crowhurst, Richard D. Newcomb
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0194487
The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites
Cited by: 24
Author(s): Goro Tanifuji, Shun Takabayashi, Keitaro Kume, Mizue Takagi, Takuro Nakayama, Ryoma Kamikawa, Yuji Inagaki, Takeji Hashimoto
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0144518
Transcriptomic Analysis and the Expression of Disease-Resistant Genes in Oryza meyeriana under Native Condition
Cited by: 9
Author(s): Bin He, Tao Xiang, Yinghong Gu, Changhe Wei, Xiaoyu Cheng, Shuqi Xiao, Zhihui Cheng, Yizheng Zhang
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0239605
Comparative transcriptome analysis reveals heat stress-responsive genes and their signalling pathways in lilies (Lilium longiflorum vs. Lilium distichum)
Cited by: 3
Author(s): Yongyao Fu, Liping Yang, Haihong Gao, Wei Xü, Qiang Li, LI Hong-qun, Jian Gao
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0069476
The Complete Mitochondrial Genome of Gossypium hirsutum and Evolutionary Analysis of Higher Plant Mitochondrial Genomes
Cited by: 43
Author(s): Guozheng Liu, Dandan Cao, Shuangshuang Li, Aiguo Su, Jianing Geng, Corrinne E. Grover, Songnian Hu, Jinping Hua
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0101673
Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus
Cited by: 159
Author(s): Harsh Raman, Rosy Raman, Andrzej Kilian, Frank Detering, Jason Carling, Neil Coombes, Simon Diffey, Gururaj Kadkol, David Edwards, M. E. McCully, Pradeep Ruperao, Isobel A. P. Parkin, Jacqueline Batley, David J. Luckett, Neil Wratten
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0117562
Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities
Cited by: 170
Author(s): Dominique A. Cowart, Miguel Pinheiro, Olivier Mouchel, Marion Maguer, Jacques Grall, Jacques Miné, Sophie Arnaud–Haond
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pone.0013241
Comparative Genomic Evidence for a Complete Nuclear Pore Complex in the Last Eukaryotic Common Ancestor
Cited by: 133
Author(s): Nadja Neumann, Daniel Lundin, Anthony M. Poole
Software Mentions: 2
Published: about 14 years ago
10.1371/journal.pone.0052302
SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies
Cited by: 24
Author(s): Eric Pante, Audrey Rohfritsch, Vanessa Becquet, Khalid Belkhir, Nicolas Bierne, Pascale Garcia
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0109831
A Transcriptome for the Study of Early Processes of Retinal Regeneration in the Adult Newt, Cynops pyrrhogaster
Cited by: 36
Author(s): Kenta Nakamura, Md. Rafiqul Islam, Miyako Takayanagi, Hirofumi Yasumuro, Wataru Inami, Ailidana Kunahong, Roman Martin Casco-Robles, Fubito Toyama, Chikafumi Chiba
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0000579
Indexing Strategies for Rapid Searches of Short Words in Genome Sequences
Cited by: 72
Author(s): Christian Iseli, Giovanna Ambrosini, Philipp Bücher, C. Victor Jongeneel
Software Mentions: 2
Published: over 17 years ago
10.1371/journal.pone.0255091
The complete mitochondrial genome of Cycas debaoensis revealed unexpected static evolution in gymnosperm species
Cited by: 5
Author(s): Sadaf Habib, Shanshan Dong, Yang Liu, Wenbo Liao, Shouzhou Zhang
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0018359
Multiple Changes in Peptide and Lipid Expression Associated with Regeneration in the Nervous System of the Medicinal Leech
Cited by: 23
Author(s): Céline Mériaux, Karim Arafah, Aurélie Tasiemski, Maxence Wisztorski, Jocelyne Bruand, Céline Boidin-Wichlacz, Annie Desmons, Delphine Debois, Olivier Laprévôte, Alain Brunelle, Terry Gaasterland, Eduardo R. Macagno, Isabelle Fournier, Michel Salzet
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0138078
Co-Administration of Cholesterol-Lowering Probiotics and Anthraquinone from Cassia obtusifolia L. Ameliorate Non-Alcoholic Fatty Liver
Cited by: 52
Author(s): Mengji Lu, Youcai Tang, Ming Li, Ping–Chang Yang, Zhiqiang Liu, Jieli Yuan, Pengyuan Zheng
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0179723
Red rot resistant transgenic sugarcane developed through expression of β-1,3-glucanase gene
Cited by: 26
Author(s): Shivani Nayyar, Bipen Kumar Sharma, Ajinder Kaur, Anu Kalia, Gulzar S. Sanghera, K. S. Thind, Inderjit Singh Yadav, Jagdeep Singh Sandhu
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0057459
Metagenomic Detection of Viral Pathogens in Spanish Honeybees: Co-Infection by Aphid Lethal Paralysis, Israel Acute Paralysis and Lake Sinai Viruses
Cited by: 89
Author(s): Fredrik Granberg, Marina Vicente-Rubiano, Consuelo Rubio-Guerri, Oskar E. Karlsson, Deborah Kukielka, Sándor Bélak, José Manuel Sánchez-Vizcaíno
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0192452
Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3
Cited by: 29
Author(s): François P. Douillard, Diego Mora, Robyn T. Eijlander, Michiel Wels, Willem M. de Vos
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0104878
Molecular Analysis of Aedes aegypti Classical Protein Tyrosine Phosphatases Uncovers an Ortholog of Mammalian PTP-1B Implicated in the Control of Egg Production in Mosquitoes
Cited by: 7
Author(s): Débora Monteiro Moretti, Lalima G. Ahuja, Rodrigo Dutra Nunes, Cecília Oliveira Cudischevitch, Carlos Renato de Oliveira Daumas-Filho, Priscilla Medeiros-Castro, Guilherme Ventura-Martins, Willy Jablonka, Felipe Gazos-Lopes, Raquel Senna, Marcos Henrique Ferreira Sorgine, Klaus Hartfelder, Margareth Lara Capurro, Geórgia C. Atella, Rafael D. Mesquita, Mário A.C. Silva-Neto
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0151574
Plant Tandem CCCH Zinc Finger Proteins Interact with ABA, Drought, and Stress Response Regulators in Processing-Bodies and Stress Granules
Cited by: 39
Author(s): Srimathi Bogamuwa, Jyan-Chyun Jang
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0194071
Candidate genes for first flower node identified in pepper using combined SLAF-seq and BSA
Cited by: 20
Author(s): Xiaofen Zhang, Guoyun Wang, Bin Chen, Heshan Du, Fenglan Zhang, Haiying Zhang, Qian Wang, Sansheng Geng
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0019328
Identification of Hyaloperonospora arabidopsidis Transcript Sequences Expressed during Infection Reveals Isolate-Specific Effectors
Cited by: 57
Author(s): Adriana Cabral, Joost H. M. Stassen, Michael Seidl, Jaqueline Bautor, Jane E. Parker, Guido Van den Ackerveken
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0155851
Integrated Metabolo-Transcriptomics Reveals Fusarium Head Blight Candidate Resistance Genes in Wheat QTL-Fhb2
Cited by: 80
Author(s): Dhananjay Dhokane, Shailesh Karre, Ajjamada C. Kushalappa, Curt A. McCartney
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0002103
The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria
Cited by: 128
Author(s): Sara H. Thomas, Ryan D. Wagner, Adrián K. Arakaki, Jeffrey Skolnick, John R. Kirby, Lawrence J. Shimkets, Robert A. Sanford, Frank E. Löffler
Software Mentions: 2
Published: over 16 years ago
10.1371/journal.pone.0142002
dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42
Cited by: 25
Author(s): Bin Fan, Lei Li, Yapeng Chao, Konrad U. Förstner, Jörg Vogel, Rainer Borriss, Xiao‐Qin Wu
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0026792
Novel Adiponectin Variants Identified in Type 2 Diabetic Patients Reveal Multimerization and Secretion Defects
Cited by: 13
Author(s): Prapaporn Jungtrakoon, Nattachet Plengvidhya, Watip Tangjittipokin, Sarin Chimnaronk, Wanisa Salaemae, Nalinee Chongjaroen, Kanjana Chanprasert, Jatuporn Sujjitjoon, Chatchawan Srisawat, Pa‐thai Yenchitsomanus
Software Mentions: 2
Published: about 13 years ago
10.1371/journal.pone.0190938
Extension of the viral ecology in humans using viral profile hidden Markov models
Cited by: 22
Author(s): Zurab Bzhalava, Emilie Hultin, Joakim Dillner
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0175116
Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays
Cited by: 39
Author(s): Lívia Costa de Oliveira, Tessália Diniz Luerce Saraiva, Wanderson M. Silva, Ulisses de Pádua Pereira, Bruno C. Campos, Leandro de Jesus Benevides, Flávia Souza Rocha, Henrique César Pereira Figueiredo, Vasco Azevedo, Siomar C. Soares
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0150719
REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence Reads
Cited by: 49
Author(s): Chong Chu, Rasmus Nielsen, Yufeng Wu
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0111655
Unique Gene Expression Profile of the Proliferating Xenopus Tadpole Tail Blastema Cells Deciphered by RNA-Sequencing Analysis
Cited by: 18
Author(s): Hiroshi Tsujioka, Takekazu Kunieda, Yuki Katou, Katsuhiko Shirahige, Takeo Kubo
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0256802
Metabolomics integrated with transcriptomics reveals the distribution of iridoid and crocin metabolic flux in Gardenia jasminoides Ellis
Cited by: 10
Author(s): Yuan Pan, Zhao Xiao, Yu Wang, Jun Tan, Da-Xia Chen
Software Mentions: 2
Published: about 3 years ago
10.1371/journal.pone.0099492
A 14.7 kDa Protein from Francisella tularensis subsp. novicida (Named FTN_1133), Involved in the Response to Oxidative Stress Induced by Organic Peroxides, Is Not Endowed with Thiol-Dependent Peroxidase Activity
Cited by: 7
Author(s): Diogo de Abreu Meireles, Thiago Gerônimo Pires Alegria, Simone Alves, Carla Rani Rocha Arantes, Luís Eduardo Soares Netto
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0056093
Rapid Focused Sequencing: A Multiplexed Assay for Simultaneous Detection and Strain Typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis
Cited by: 12
Author(s): Rosemary S. Turingan, Hans-Ulrich Thomann, Anna Zolotova, Eugene Tan, Richard F. Selden
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0179027
Transcriptome profiling analysis reveals the role of silique in controlling seed oil content in Brassica napus
Cited by: 7
Author(s): Ke-Lin Huang, Zhang Mei-li, Guangjing Ma, Huan Wu, Xiaoming Wu, Feng Ren, Xuebao Li
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0000169
Vertebrate Vitellogenin Gene Duplication in Relation to the “3R Hypothesis”: Correlation to the Pelagic Egg and the Oceanic Radiation of Teleosts
Cited by: 181
Author(s): Roderick Nigel Finn, Børge André Kristoffersen
Software Mentions: 2
Published: almost 18 years ago
10.1371/journal.pone.0208735
Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016
Cited by: 8
Author(s): Vaishnavi Pattabiraman, Lee S. Katz, Jessica C. Chen, Andre McCullough, Eija Trees
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0076095
Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia
Cited by: 20
Author(s): Jan Šlapeta, Marjorie C. Linares
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0103160
Characterization of Hepatitis C Virus Genotypes by Direct Sequencing of HCV 5′UTR Region of Isolates from Saudi Arabia
Cited by: 13
Author(s): Medhat K. Shier, Mohammad S. El-Wetidy, Hebatallah H. Ali, Mohammad M. Al‐Qattan
Software Mentions: 2
Published: over 10 years ago
10.1155/2019/3780245
Iterative Variable Gene Discovery from Whole Genome Sequencing with a Bootstrapped Multiresolution Algorithm
Cited by: 1
Author(s): David N. Olivieri, Francisco Gambón-Deza
Software Mentions: 2
Published: almost 6 years ago
10.1016/j.csbj.2017.01.002
Deep Assessment of Genomic Diversity in Cassava for Herbicide Tolerance and Starch Biosynthesis
Cited by: 14
Author(s): Jorge Duitama, Lina Kafuri, Daniel Tello, Ana Marı́a Leiva, Bernhard J. Hofinger, Sneha Datta, Zaida Lentini, Ericson Aranzales, Bradley J. Till, Hernán Ceballos
Software Mentions: 2
Published: almost 8 years ago
10.1007/s00284-014-0629-1
The Diversity of Bacteria Isolated from Antarctic Freshwater Reservoirs Possessing the Ability to Produce Polyhydroxyalkanoates
Cited by: 27
Author(s): Sławomir Ciesielski, Dorota Górniak, Justyna Możejko, Aleksander Świątecki, Jakub Grzesiak, Marek K. Zdanowski
Software Mentions: 2
Published: over 10 years ago
10.1002/ece3.2028
Population genomics of local adaptation versus speciation in coral reef fishes ( <i>Hypoplectrus</i> spp, Serranidae)
Cited by: 31
Author(s): Sophie Picq, W. Owen McMillan, Oscar Puebla
Software Mentions: 2
Published: over 8 years ago
10.1002/ece3.5708
Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze River
Cited by: 9
Author(s): Fangyuan Cheng, Qian Wang, Pierpaolo Maisano Delser, Chenhong Li
Software Mentions: 2
Published: about 5 years ago
10.1080/22221751.2020.1773745
Genetic cluster analysis of SARS-CoV-2 and the identification of those responsible for the major outbreaks in various countries
Cited by: 45
Author(s): Xuemei Yang, Ning Dong, Edward Wai Chi Chan, Sheng Chen
Software Mentions: 2
Published: almost 5 years ago
10.1080/22221751.2018.1563455
Detection of human parvovirus 4 DNA in the patients with acute encephalitis syndrome during seasonal outbreaks of the disease in Gorakhpur, India
Cited by: 6
Author(s): Vidya A. Arankalle, Navin Srivastava, K. P. Kushwaha, Agnibha Sen, Ashwini Y. Ramdasi, Priyanka Patel, Sumeet Kuthe, Bangari Haldipur, Gajanan N. Sakpal, Kavita S. Lole, Nilesh Ingle
Software Mentions: 2
Published: almost 6 years ago
10.1111/j.1462-2920.2010.02193.x
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
Cited by: 1,150
Author(s): Susan M. Huse, David B. Mark Welch, Hilary G. Morrison, Mitchell L. Sogin
Software Mentions: 2
Published: over 14 years ago
10.1111/j.1462-2920.2008.01667.x
The Cry48Aa-Cry49Aa binary toxin from<i>Bacillus sphaericus</i>exhibits highly restricted target specificity
Cited by: 37
Author(s): Gareth Wyn Jones, Margaret C. Wirth, R. G. Monnerat, Colin Berry
Software Mentions: 2
Published: over 16 years ago
10.1111/1462-2920.13036
Closing the gaps on the viral photosystem‐ <scp>I</scp> <i> psa <scp>DCAB</scp> </i> gene organization
Cited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: about 9 years ago
10.3389/fmicb.2017.01772
Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Cited by: 21
Author(s): Sergio Triana, Hans de Cock, Robin A. Ohm, Giovanna Danies, Han A. B. Wösten, Silvia Restrepo, Andrés Fernando González Barrios, Adriana Celis
Software Mentions: 2
Published: about 7 years ago
10.3389/fmicb.2020.584589
Characterization of a Novel Acyl-ACP Δ9 Desaturase Gene Responsible for Palmitoleic Acid Accumulation in a Diatom Phaeodactylum tricornutum
Cited by: 7
Author(s): Baoling Liu, Yan Sun, Hang Wei, Xiaodan Wang, Jinai Xue, Ronghua Ma, Xiaoyun Jia, Runzhi Li
Software Mentions: 2
Published: almost 4 years ago
10.3389/fmicb.2020.601839
Identification of New Helicobacter pylori Subpopulations in Native Americans and Mestizos From Peru
Cited by: 6
Author(s): Andrés Julián Gutiérrez-Escobar, Billie Velapatiño, Víctor Borda, Charles S. Rabkin, Eduardo Tarazona‐Santos, Lilia Cabrera, Jaime Cok, Catherine C. Hooper, M Helena Jahuira Arias, Phabiola Herrera, Mehwish Noureen, Difei Wang, Judith Romero–Gallo, Bao Tran, Richard M. Peek, Douglas E. Berg, Robert H. Gilman, M. Constanza Camargo
Software Mentions: 2
Published: almost 4 years ago
10.3389/fmicb.2016.00639
Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion
Cited by: 27
Author(s): Joshua T. Cooper, Geoffrey A. Sinclair, Boris Wawrik
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2020.00947
Molecular Characterization and Comparative Genomic Analysis of vB_PaeP_YA3, a Novel Temperate Bacteriophage of Pseudomonas aeruginosa
Cited by: 5
Author(s): Xinyan Yu, Jianping Xu, Yu Gu, Ruiyang Zhang, Yefei Zhu, Xiaoqiu Liu
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2015.01044
Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function
Cited by: 22
Author(s): William P. Inskeep, Zackary J. Jay, Richard E. Macur, Scott Clingenpeel, Aaron Tenney, David Lovalvo, Jacob P. Beam, Mark A. Kozubal, Wayne C. Shanks, Lisa A. Morgan, Jinjun Kan, Yuri A. Gorby, Shibu Yooseph, Kenneth H. Nealson
Software Mentions: 2
Published: about 9 years ago
10.3389/fmicb.2018.00423
Halotolerant Exiguobacterium profundum PHM11 Tolerate Salinity by Accumulating L-Proline and Fine-Tuning Gene Expression Profiles of Related Metabolic Pathways
Cited by: 21
Author(s): Vikas Patel, R. P. Srivastava, Anjney Sharma, Anchal Srivastava, Surinder Singh, Alok Kumar Srivastava, Prem Lal Kashyap, Hillol Chakdar, Kurinji Pandiyan, Alok Kalra, Anil Kumar Saxena
Software Mentions: 2
Published: over 6 years ago
10.3389/fneur.2018.00465
Environmental Enrichment Upregulates Striatal Synaptic Vesicle-Associated Proteins and Improves Motor Function
Cited by: 6
Author(s): Suk Young Song, Minji Chae, Ji Hea Yu, Min Young Lee, Soonil Pyo, Yeseul Shin, Ahreum Baek, Jung Won Park, Eun Sook Park, Ja Young Choi, Sung Rae Cho
Software Mentions: 2
Published: over 6 years ago
10.3389/fphys.2016.00096
Characterization of a Digestive α-Amylase in the Midgut of Pieris brassicae L. (Lepidoptera: Pieridae)
Cited by: 12
Author(s): Ali Sharifloo, Arash Zibaee, Jalal Jalali Sendi, Khalil Talebi Jahroumi
Software Mentions: 2
Published: over 8 years ago
10.3389/fphys.2020.00417
Transcriptome Analysis of Ophraella communa Male Reproductive Tract in Indirect Response to Elevated CO2 and Heat Wave
Cited by: 2
Author(s): Xuyuan Gao, Zhonghuan Tian, Yan Zhang, Guangmei Chen, Chunzi Ma, Shaowei Cui, Yongyue Lu, Zhongshi Zhou
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2017.00594
De novo Sequencing and Transcriptome Analysis Reveal Key Genes Regulating Steroid Metabolism in Leaves, Roots, Adventitious Roots and Calli of Periploca sepium Bunge
Cited by: 7
Author(s): Jian Zhang, Xinglin Li, Fuping Lu, Shan-Ying Wang, Yunhe An, Xiaoxing Su, Xiankuan Li, Lin Ma, Han Guang-jian
Software Mentions: 2
Published: over 7 years ago
10.3389/fpls.2021.712254
Identification and Characterization of Secondary Wall-Associated NAC Genes and Their Involvement in Hormonal Responses in Tobacco (Nicotiana tabacum)
Cited by: 5
Author(s): Na Xu, Lin Meng, Lin Song, Xiaoxu Li, Shanshan Du, Fengqin Hu, Yuanda Lv, Wenjing Song
Software Mentions: 2
Published: about 3 years ago
10.3389/fpls.2014.00356
Unravelling the proteomic profile of rice meiocytes during early meiosis
Cited by: 22
Author(s): Melania Collado-Romero, Enriqueta Alós, Pilar Prieto
Software Mentions: 2
Published: over 10 years ago
10.3389/fpls.2017.01653
Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly
Cited by: 18
Author(s): H Busra Cagirici, Sezgi Biyiklioglu, Hikmet Budak
Software Mentions: 2
Published: about 7 years ago
10.3389/fpls.2016.01374
Genomic Dissection and Expression Profiling Revealed Functional Divergence in Triticum aestivum Leucine Rich Repeat Receptor Like Kinases (TaLRRKs)
Cited by: 56
Author(s): . Shumayla, Shailesh Sharma, Rohit Kumar, Venugopal Mendu, Kashmir Singh, Santosh Kumar Upadhyay
Software Mentions: 2
Published: about 8 years ago
10.3389/fpls.2021.642631
Epigenetic Variability Among Saffron Crocus (Crocus sativus L.) Accessions Characterized by Different Phenotypes
Cited by: 13
Author(s): Matteo Busconi, Elisabeth Wischnitzki, Marcello Del Corvo, Licia Colli, Giovanna Soffritti, Lorenzo Stagnati, Silvia Fluch, Eva Maria Sehr, Marcelino de los Mozos Pascual, José Antonio Fernández
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2021.714305
Insights Into the Molecular Evolution of AT-Hook Motif Nuclear Localization Genes in Brassica napus
Cited by: 7
Author(s): Weimeng Zhang, Dongdong Fang, Xiuzhu Cheng, Jun Cao, Xiao‐Li Tan
Software Mentions: 2
Published: about 3 years ago
10.3389/fpls.2021.625520
De novo Transcriptome Assembly and Comparative Analysis Highlight the Primary Mechanism Regulating the Response to Selenium Stimuli in Oats (Avena sativa L.)
Cited by: 2
Author(s): Tao Liu, Xiaoting Liu, Rangrang Zhou, Hong Chen, Huaigang Zhang, Bo Zhang
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2019.00983
Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves
Cited by: 29
Author(s): Kai Zou, Xueduan Liu, Zhenmin Du, Qin Yang, Shaodong Fu, Delong Meng, Wen-Qi Chang, Rui Li, Huaqun Yin, Yili Liang
Software Mentions: 2
Published: over 5 years ago
10.3389/fpls.2020.570915
Expression of LhFT1, the Flowering Inducer of Asiatic Hybrid Lily, in the Bulb Scales
Cited by: 5
Author(s): Kana Kurokawa, Junya Kobayashi, Keiichirou Nemoto, Akira Nozawa, Tatsuya Sawasaki, Takashi Nakatsuka, Masumi Yamagishi
Software Mentions: 2
Published: about 4 years ago
10.3389/fpls.2016.02058
A Comprehensive Prescription for Plant miRNA Identification
Cited by: 38
Author(s): Burcu Alptekin, Bala Anı Akpınar, Hikmet Budak
Software Mentions: 2
Published: almost 8 years ago
10.3389/fpls.2020.00156
A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping
Cited by: 6
Author(s): Daniela Holtgräwe, Thomas Rosleff Soerensen, Ludger Hausmann, Boas Pucker, Prisca Viehöver, Reinhard Töpfer, Bernd Weißhaar
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2017.01519
Identification and Expression Profile of CYPome in Perennial Ryegrass and Tall Fescue in Response to Temperature Stress
Cited by: 29
Author(s): Tao Xiang, Mingxiu Wang, Yan Dai, Yan Wang, Yan-Fen Fan, Ping Mao, Xinrong Ma
Software Mentions: 2
Published: about 7 years ago
10.3389/fpls.2016.00488
Genetic Adaptation of Giant Lobelias (Lobelia aberdarica and Lobelia telekii) to Different Altitudes in East African Mountains
Cited by: 8
Author(s): Shu Ying Zhao, Ling Yun Chen, John K. Muchuku, Guang Hu, Qing Feng Wang
Software Mentions: 2
Published: over 8 years ago
10.3389/fpls.2015.01086
De novo Transcriptome Assembly of a Chinese Locoweed (Oxytropis ochrocephala) Species Provides Insights into Genes Associated with Drought, Salinity, and Cold Tolerance
Cited by: 18
Author(s): Wei He, Zhuang Hu, Yànpíng Fù, Linwei Guo, Bin Guo, Lizhu Guo, Xiuhong Zhang, Yahui Wei
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12983-017-0225-x
Comparative genomics analyses of alpha-keratins reveal insights into evolutionary adaptation of marine mammals
Cited by: 17
Author(s): Xiaohui Sun, Zhang Zepeng, Yingying Sun, Jing Li, Shixia Xu, Guang Yang
Software Mentions: 2
Published: over 7 years ago
10.1534/g3.115.018382
Identification of Reproduction-Related Gene Polymorphisms Using Whole Transcriptome Sequencing in the Large White Pig Population
Cited by: 30
Author(s): Daniel Fischer, Asta Laiho, Attila Gyenesei
Software Mentions: 2
Published: over 9 years ago
10.1534/g3.116.038448
Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi
Cited by: 21
Author(s): Pierre‐Yves Dupont, Murray P. Cox
Software Mentions: 2
Published: over 7 years ago
10.1534/g3.117.043083
Annotated Draft Genome Assemblies for the Northern Bobwhite (<i>Colinus virginianus</i>) and the Scaled Quail (<i>Callipepla squamata</i>) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size
Cited by: 20
Author(s): David L. Oldeschulte, Yvette A. Halley, Miranda Wilson, Eric K. Bhattarai, Wesley Brashear, Joshua A. Hill, Richard P. Metz, Charles D. Johnson, Dale Rollins, Markus J. Peterson, Derek M. Bickhart, Jared E. Decker, John F. Sewell, Christopher M. Seabury
Software Mentions: 2
Published: about 7 years ago
10.1534/g3.120.401205
Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (<i>Betta splendens</i>) in a University Master’s Course
Cited by: 11
Author(s): Stefan Prost, Malte Petersen, Martin Grethlein, Sarah Joy Hahn, Nina Kuschik-Maczollek, Martyna Ewa Olesiuk, Jan-Olaf Reschke, Tamara Elke Schmey, Caroline Zimmer, Deepak Kumar Gupta, Tilman Schell, Raphael T. F. Coimbra, Jordi de Raad, Fritjof Lammers, Sven Winter, Axel Janke
Software Mentions: 2
Published: over 4 years ago
10.3390/genes8120385
High-Throughput Sequencing of Small RNA Transcriptomes in Maize Kernel Identifies miRNAs Involved in Embryo and Endosperm Development
Cited by: 15
Author(s): Lijuan Xing, Ming Zhu, Min Zhang, Wenzong Li, Haiyang Jiang, Junjie Zou, Lei Wang, Miaoyun Xu
Software Mentions: 2
Published: almost 7 years ago
10.3390/genes9060278
RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis
Cited by: 3
Author(s): Xin Chen, Anjun Ma, Adam McDermaid, Han-Yuan Zhang, Chao Liu, Huansheng Cao, Qin Ma
Software Mentions: 2
Published: over 6 years ago
10.3390/genes9100510
Genome-Wide Identification and Characterization of wALOG Family Genes Involved in Branch Meristem Development of Branching Head Wheat
Cited by: 6
Author(s): Wenzhi Nan, Shandang Shi, Diddugodage Chamila Jeewani, Li Quan, Song Xue, Zhonghua Wang
Software Mentions: 2
Published: about 6 years ago
10.3390/genes10020081
Complete Genome Sequence Analysis and Characterization of Selected Iron Regulation Genes of Pasteurella Multocida Serotype A Strain PMTB2.1
Cited by: 7
Author(s): Shagufta Jabeen, Huan Yong Yap, Faez Firdaus Jesse Abdullah, Zunita Zakaria, Nurulfiza Mat Isa, Yung-Chie Tan, Yap S Joo, Dilan Amila Satharasinghe, Abdul Rahman Omar
Software Mentions: 2
Published: almost 6 years ago
10.3390/genes10030219
DNA Methylation Patterns in the Round Goby Hypothalamus Support an On-The-Spot Decision Scenario for Territorial Behavior
Cited by: 10
Author(s): Vincent Somerville, Michaela Schwaiger, Philipp Hirsch, Jean‐Claude Walser, Karen Bussmann, Alexandra Weyrich, Patricia Burkhardt‐Holm, Irene Adrian‐Kalchhauser
Software Mentions: 2
Published: over 5 years ago
10.3390/genes12050704
CmNAC73 Mediates the Formation of Green Color in Chrysanthemum Flowers by Directly Activating the Expression of Chlorophyll Biosynthesis Genes HEMA1 and CRD1
Cited by: 11
Author(s): Luo Jia, Huan Wang, Sijia Chen, Shengjing Ren, Hansen Fu, Ruirui Li, Caiyun Wang
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-017-00150-7
Reciprocal regulation of γ-globin expression by exo-miRNAs: Relevance to γ-globin silencing in β-thalassemia major
Cited by: 14
Author(s): Kuo‐Ting Sun, Yu-Nan Huang, Kalaiselvi Palanisamy, Shih‐Sheng Chang, I‐Kuan Wang, Kang‐Hsi Wu, Ping Chen, Ching‐Tien Peng, Chi Yuan Li
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-03433-1
Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
Cited by: 4
Author(s): Yandong Ren, Yanan Zhu, Qi Wang, Hui Xiang, Boyi Wang
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-08256-8
Linkage mapping aided by de novo genome and transcriptome assembly in Portunus trituberculatus: applications in growth-related QTL and gene identification
Cited by: 22
Author(s): Jianjian Lv, Bingbo Gao, Ping Liu, Jian Li, Xianliang Meng
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-11170-8
RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats
Cited by: 59
Author(s): H Busra Cagirici, Burcu Alptekin, Hikmet Budak
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-10867-0
Integrated analysis of microRNA and mRNA expression profiles during the sex-differentiation sensitive period in oriental river prawn, Macrobrachium nipponense
Cited by: 18
Author(s): Shubo Jin, Hongtuo Fu, Shengming Sun, Sufei Jiang, Yiwei Xiong, Yongsheng Gong, Hui Qiao, Wenyi Zhang, Yan Wu
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-17132-4
Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota
Cited by: 63
Author(s): Ibrahim Hamad, Stéphane Ranque, Esam I. Azhar, Muhammad Yasir, Asif A. Jiman-Fatani, Hervé Tissot‐Dupont, Didier Raoult, Fadi Bittar
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-018-19820-1
Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system
Cited by: 24
Author(s): Maria I. Pratas, Bruno Aguiar, Jorge Vieira, Vanessa Nunes, Vanessa Teixeira, Nuno A. Fonseca, Amy Iezzoni, Steve van Nocker, Cristina Vieira
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-018-21614-4
A multitarget approach to drug discovery inhibiting Mycobacterium tuberculosis PyrG and PanK
Cited by: 33
Author(s): Laurent R. Chiarelli, Giorgia Mori, Béatrice Silvia Orena, Marta Esposito, Thomas R. Lane, Ana Luisa de Jesus Lopes Ribeiro, Giulia Degiacomi, Júlia Zemanová, Sára Szádocka, Stanislav Huszár, Zuzana Palčeková, Marcello Manfredi, Fabio Gosetti, Joël Lelièvre, Lluís Ballell, Elena Kazakova, Vadim Makarov, Emílio Marengo, Katarı́na Mikušová, Stewart T. Cole, Giovanna Riccardi, Sean Ekins, Maria Rosalia Pasca
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-018-24477-x
Analysis of microRNA reveals cleistogamous and chasmogamous floret divergence in dimorphic plant
Cited by: 10
Author(s): Fan Wu, Daiyu Zhang, Blaise Pascal Muvunyi, Yan Qi, Yufei Zhang, Yan Zhang, Mingshu Cao, Yanrong Wang, Jiyu Zhang
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-25044-0
Comparative analyses and structural insights of the novel cytochrome P450 fusion protein family CYP5619 in Oomycetes
Cited by: 4
Author(s): Hans Denis Bamal, Wanping Chen, Samson Sitheni Mashele, David R. Nelson, Abidemi Paul Kappo, Rebamang A. Mosa, Jae‐Hyuk Yu, Jack A. Tuszyński, Khajamohiddin Syed
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-48824-8
The Single-molecule long-read sequencing of Scylla paramamosain
Cited by: 14
Author(s): Haifu Wan, Xiaoyun Jia, Pengfei Zou, Ziping Zhang, Yilei Wang
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-49550-x
ALKBH overexpression in head and neck cancer: potential target for novel anticancer therapy
Cited by: 41
Author(s): Tomaš Pilžys, Michał Marcinkowski, Wojciech Kukwa, Damian Garbicz, Małgorzata Dylewska, Karolina Ferenc, Adam Mieczkowski, Andrzej Kukwa, Ewa Migacz, Dominika Wołosz, Damian Mielecki, Arne Klungland, Jan Piwowarski, Jarosław Poznański, Elżbieta Grzesiuk
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-51190-0
Transcriptome-Wide Identification and Characterization of Circular RNAs in Leaves of Chinese Cabbage (Brassica rapa L. ssp. pekinensis) in Response to Calcium Deficiency-Induced Tip-burn
Cited by: 24
Author(s): Wuhong Wang, Jinglei Wang, Qingzhen Wei, Biyuan Li, Xinmin Zhong, Tianhua Hu, Hongbo Hu, Chonglai Bao
Software Mentions: 2
Published: about 5 years ago