pypi: blast | Projects | Ecosyste.ms: Papers

10.1099/jgv.0.000771

Genome sequence variation in the constricta strain dramatically alters the protein interaction and localization map of Potato yellow dwarf virus
Cited by: 16
Author(s): Chanyong Jang, Renyuan Wang, Joseph R. Wells, F. A. Ponce de León, Mark L. Farman, John Hammond, Michael M. Goodin
Software Mentions: 2
Published: over 9 years ago

10.1038/srep39034

Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments
Cited by: 26
Author(s): Olga V. Golyshina, Ilya V. Kublanov, Hai Tran, Aleksei A. Korzhenkov, Heinrich Lünsdorf, Taras Y. Nechitaylo, С. Н. Гаврилов, Stepan V. Toshchakov, Peter N. Golyshin
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12862-017-1007-y

Segmental duplications: evolution and impact among the current Lepidoptera genomes
Cited by: 11
Author(s): Qian Zhao, Dongna Ma, Liette Vasseur, Minsheng You
Software Mentions: 2
Published: about 9 years ago

10.1155/2016/7823429

VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
Cited by: 19
Author(s): Yiqing Xu, Changwei Bi, Guoxin Wu, Suyun Wei, Xiaogang Dai, Tongming Yin, Ning Ye
Software Mentions: 2
Published: over 10 years ago

10.1038/srep32006

Genome-wide identification of cassava R2R3 MYB family genes related to abscission zone separation after environmental-stress-induced abscission
Cited by: 26
Author(s): Wenbin Liao, Yiling Yang, Yayun Li, Gan Wang, Ming Peng
Software Mentions: 2
Published: about 10 years ago

10.1038/srep26621

Metagenomic sequencing reveals the relationship between microbiota composition and quality of Chinese Rice Wine
Cited by: 104
Author(s): Xutao Hong, Jing Chen, Lin Liu, Huan Wu, Hai-Qin Tan, Guangfa Xie, Qian Xu, Huijun Zhang, Wenjing Yu, Lan Wang, Nan Qin
Software Mentions: 2
Published: over 10 years ago

10.1186/s12859-019-3232-4

Protein sequence information extraction and subcellular localization prediction with gapped k-Mer method
Cited by: 8
Author(s): Yao Yao, Yaping Lv, Ling Li, Huimin Xu, Binbin Ji, Jing Chen, Chun Li, Bo Liao, Xuying Nan
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep25708

Transcriptomic responses of the calanoid copepod Calanus finmarchicus to the saxitoxin producing dinoflagellate Alexandrium fundyense
Cited by: 28
Author(s): Vittoria Roncalli, Matthew Cieslak, Petra H. Lenz
Software Mentions: 2
Published: over 10 years ago

10.1038/s41396-020-00860-3

CRISPR-Cas systems restrict horizontal gene transfer in Pseudomonas aeruginosa
Cited by: 46
Author(s): Rachel M. Wheatley, R. Craig MacLean
Software Mentions: 2
Published: over 5 years ago

10.1186/s12862-015-0423-0

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
Cited by: 304
Author(s): Stephen A. Smith, Michael J. Moore, Joseph W. Brown, Ya Yang
Software Mentions: 2
Published: about 11 years ago

10.1038/srep17551

Transcriptomes reveal the genetic mechanisms underlying ionic regulatory adaptations to salt in the crab-eating frog
Cited by: 14
Author(s): Yong Shao, Lijun Wang, Li Zhong, Mingsheng Hong, Hong‐Man Chen, Robert W. Murphy, Dong‐Dong Wu, Yaping Zhang, Jing Che
Software Mentions: 2
Published: almost 11 years ago

10.3390/biology8030060

The Dynamics of the Cell Wall Proteome of Developing Alfalfa Stems
Cited by: 10
Author(s): Kjell Sergeant, Bruno Printz, Gea Guerriero, Jenny Renaut, Stanley Lutts, Jean-François Hausman
Software Mentions: 2
Published: about 7 years ago

10.1038/srep14446

Transcriptome and gene expression analysis of DHA producer Aurantiochytrium under low temperature conditions
Cited by: 52
Author(s): Zhenhua Ma, Yuxiang Tan, Guizhong Cui, Yingang Feng, Qiu Cui, Xiaojin Song
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-10-295

Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napus
Cited by: 20
Author(s): Christian Obermeier, Bashir Hosseini, W. Friedt, Rod J. Snowdon
Software Mentions: 2
Published: over 17 years ago

10.1038/srep21016

Comparative genomics of mitochondria in chlorarachniophyte algae: endosymbiotic gene transfer and organellar genome dynamics
Cited by: 21
Author(s): Goro Tanifuji, John M. Archibald, Takeji Hashimoto
Software Mentions: 2
Published: over 10 years ago

10.1038/sdata.2015.15

De novo transcriptome assembly databases for the central nervous system of the medicinal leech
Cited by: 22
Author(s): Dror Hibsh, Hadas Schori, Sol Efroni, Orit Shefi
Software Mentions: 2
Published: over 11 years ago

10.1038/srep23234

A MicroRNA-Mediated Insulin Signaling Pathway Regulates the Toxicity of Multi-Walled Carbon Nanotubes in Nematode Caenorhabditis elegans
Cited by: 44
Author(s): Yunli Zhao, Yang Jiao, Dayong Wang
Software Mentions: 2
Published: over 10 years ago

10.1186/1745-6150-1-12

Cited by: 10
Author(s): Dimitris Papamichail, Nicholas Delihas
Software Mentions: 2
Published: over 20 years ago

10.1002/prot.24915

The value of protein structure classification information-Surveying the scientific literature
Cited by: 19
Author(s): Naomi Fox, Steven E. Brenner, John-Marc Chandonia
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-13-221

Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses
Cited by: 46
Author(s): Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, Philippe Lecomte, Ingrid Mercier, Hélène Bergès, Caroline Pont, A. Blanco, Jérôme Salse
Software Mentions: 2
Published: over 14 years ago

10.3390/md16020042

Proteomic Analyses of the Unexplored Sea Anemone Bunodactis verrucosa
Cited by: 17
Author(s): Dany Domínguez-Pérez, Alexandre Campos, Armando A. Rodríguez, Maria V. Turkina, Tiago Ribeiro, Hugo Osório, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 2
Published: over 8 years ago

10.1186/1477-5956-8-56

Proteome changes in platelets activated by arachidonic acid, collagen, and thrombin
Cited by: 45
Author(s): Pavel Májek, Zuzana Reicheltová, Jana Štikarová, Jiřı́ Suttnar, Alžběta Sobotková, Jan E. Dyr
Software Mentions: 2
Published: almost 16 years ago

10.1007/s13205-014-0238-5

Diversified diazotrophs associated with the rhizosphere of Western Indian Himalayan native red kidney beans (Phaseolus vulgaris L.)
Cited by: 24
Author(s): Deep Chandra Suyal, Amit Yadav, Yogesh S. Shouche
Software Mentions: 2
Published: about 12 years ago

10.1186/s13062-016-0144-3

Compartmentalization in PVC super-phylum: evolution and impact
Cited by: 15
Author(s): Sandrine Pinos, Pierre Pontarotti, Didier Raoult, Jean-Pierre Baudoin, Isabelle Pagnier
Software Mentions: 2
Published: about 10 years ago

10.1111/jcmm.16358

Analysis of T‐cell receptor repertoire in peripheral blood of patients with pancreatic cancer and other pancreatic diseases
Cited by: 2
Author(s): Hui Wang, Yue Yuan, Chunfeng Lu, Siqi Zhou, Yixuan Zhang, Jing Zhao, Chenghu Xu, Jie Yang, Haochen Su, Borui Li, Xi-Han Li, Pin Wang, Guifang Xu, Lei Wang, Xiaoping Zou, Shanshan Bao, Shu Zhang, Ying Lv
Software Mentions: 2
Published: over 5 years ago

10.1186/s12284-017-0147-4

Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm
Cited by: 48
Author(s): Christine Jade Dilla-Ermita, Erwin Tandayu, Venice Margarette Juanillas, Jeffrey Detras, Dennis N. Lozada, Maria Stefanie Dwiyanti, Casiana Vera Cruz, Edwige Gaby Nkouaya Mbanjo, E. Y. Ardales, Maria Genaleen Q. Diaz, Merlyn S. Mendioro, Michael J. Thomson, Tobias Kretzschmar
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms22062837

Transcriptional Regulatory Networks Associate with Early Stages of Potato Virus X Infection of Solanum tuberosum
Cited by: 5
Author(s): Venura Herath, Jeanmarie Verchot
Software Mentions: 2
Published: over 5 years ago

10.1099/jgv.0.001315

Discovery of two highly divergent negative-sense RNA viruses associated with the parasitic nematode, Capillaria hepatica, in wild Mus musculus from New York City
Cited by: 14
Author(s): Simon H. Williams, Xiaoyu Che, Alexandra Oleynik, Joel A. Garcia, Dorothy R. Muller, Tanja S. Zabka, Cadhla Firth, Robert M. Corrigan, Thomas Briese, Komal Jain, W. Ian Lipkin
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12967-021-02882-7

The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing
Cited by: 29
Author(s): Wenli Zhou, Zhang De, Zhengpeng Li, Huiqing Jiang, Jingnan Li, Rongrong Ren, Xuefeng Gao, Jianfeng Li, Xin Wang, Weifeng Wang, Yunsheng Yang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-015-1737-4

Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress
Cited by: 22
Author(s): Valeria Wallace-Salinas, Daniel P. Brink, Dag Ahrén, Marie-Françoise Gorwa-Grauslund
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2164-12-283

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing
Cited by: 64
Author(s): Anna W. Santure, Jacob Gratten, Jim A. Mossman, Ben C. Sheldon, Jon Slate
Software Mentions: 2
Published: over 15 years ago

10.3390/insects12060563

The Draft Genome of Yellow Stem Borer, an Agriculturally Important Pest, Provides Molecular Insights into Its Biology, Development and Specificity Towards Rice for Infestation
Cited by: 2
Author(s): Divya Kattupalli, Kalyani M. Barbadikar, B. Vishalakshi, Suneel Ballichatla, R Athulya, A. P. Padmakumari, Swati Saxena, Kishor Gaikwad, Sridhar Yerram, K. Premalatha, Sheshu Madhav Maganti
Software Mentions: 2
Published: about 5 years ago

10.1186/1472-6807-7-10

Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
Cited by: 70
Author(s): D.J. Ferraro, Eric N. Brown, Chung Huang Yu, Rebecca E. Parales, David T. Gibson, S. Ramaswamy
Software Mentions: 2
Published: over 19 years ago

10.1186/s40104-018-0260-2

Molecular characterization and expression patterns of Nanog gene validating its involvement in the embryonic development and maintenance of spermatogonial stem cells of farmed carp, Labeo rohita
Cited by: 14
Author(s): Swagat Kumar Patra, Vemulawada Chakrapani, Meenati Manjari Soren, Jitendra Kumar Sundaray, Manoj Panda, Hirak Kumar Barman
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-016-3266-1

Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii
Cited by: 31
Author(s): Yan Zhu, Longxian Chen, Chengjun Zhang, Pei Hao, Xinyun Jing, Xuan Li
Software Mentions: 2
Published: over 9 years ago

10.1186/s13104-015-1683-x

Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates
Cited by: 1
Author(s): Mbaye Tine
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41438-020-0265-9

Intra- and interspecific diversity analyses in the genus Eremurus in Iran using genotyping-by-sequencing reveal geographic population structure
Cited by: 8
Author(s): Hanieh Hadizadeh, Bochra Amina Bahri, Peng Qi, H. Dayton Wilde, Katrien M. Devos
Software Mentions: 2
Published: over 6 years ago

10.1038/s41438-020-0333-1

High-density genetic map construction and identification of loci controlling flower-type traits in Chrysanthemum (Chrysanthemum × morifolium Ramat.)
Cited by: 25
Author(s): Xueqin Song, Yuhui Xu, Guolian Kang, Guangxun Fan, Fan Zhang, Chengyan Deng, Silan Dai, Hua He, Huaigen Xin, Yingying Li
Software Mentions: 2
Published: about 6 years ago

10.3390/insects11110736

Gene Sequences of Potential Targets of Insecticidal PF2 Lectin Identified from the Larval De Novo Transcriptome of the Mexican Bean Weevil (Zabrotes Subfasciatus; Boheman 1833)
Cited by: 3
Author(s): Irlanda Lagarda-Díaz, Miguel Ángel Hernández‐Oñate, José Ángel Huerta‐Ocampo, Ana María Guzmán-Partida, Joy J. Winzerling, Dawn L. Geiser, Luz Vázquez–Moreno
Software Mentions: 2
Published: almost 6 years ago

10.1186/s40104-019-0408-8

Evaluation of heat stress effects on cellular and transcriptional adaptation of bovine granulosa cells
Cited by: 48
Author(s): Adnan Khan, Junling Dou, Yachun Wang, Xiaolong Jiang, Muhammad Zahoor Khan, Hanpeng Luo, Τahir Usman, Huabin Zhu
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-13-621

Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major
Cited by: 37
Author(s): Vijayendran Gowri, Indira Ghosh, Amit Sharma, Rentala Madhubala
Software Mentions: 2
Published: almost 14 years ago

10.1186/s13099-019-0297-6

Compositional and functional differences in human gut microbiome with respect to equol production and its association with blood lipid level: a cross-sectional study
Cited by: 23
Author(s): Wei Zheng, Yue Ma, Aihua Zhao, Tao He, Na Lyu, Zhengqiang Pan, Geqi Mao, Yan Liu, Jing Li, Peiyu Wang, Jun Wang, Baoli Zhu, Yumei Zhang
Software Mentions: 2
Published: over 7 years ago

10.1186/1753-6561-3-S4-S14

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
Cited by: 11
Author(s): Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornshøj, Magali SanCristobal, Pierre Mormède, Dirk-Jan de Koning
Software Mentions: 2
Published: about 17 years ago

10.1186/s12870-019-1785-z

Development and characterisation of interspecific hybrid lines with genome-wide introgressions from Triticum timopheevii in a hexaploid wheat background
Cited by: 21
Author(s): Uma Devi, Surbhi Grewal, Caiyun Yang, Stella Hubbart‐Edwards, Duncan Scholefield, Stephen Ashling, Amanda Burridge, Ian P. King, Julie King
Software Mentions: 2
Published: over 7 years ago

10.1186/s12870-020-2239-3

Genome-wide identification and analysis of B-BOX gene family in grapevine reveal its potential functions in berry development
Cited by: 40
Author(s): Hongru Wei, Peipei Wang, Jianqing Chen, Changjun Li, Yongzhang Wang, Yuan Yang, Jinggui Fang, Xiangpeng Leng
Software Mentions: 2
Published: over 6 years ago

10.1111/gcbb.12280

Association mapping in Salix viminalis L. (Salicaceae) – identification of candidate genes associated with growth and phenology
Cited by: 29
Author(s): Henrik R. Hallingbäck, Johan Fogelqvist, Stephen J. Powers, Juan Luis Turrion-Gomez, Rachel Rossiter, Joanna S. Amey, Tom Martin, Martin Weih, Niclas Gyllenstrand, A. Karp, Ulf Lagercrantz, Steven J. Hanley, Sofia Berlin, Ann Christin Rönnberg‐Wästljung
Software Mentions: 2
Published: about 11 years ago

10.1038/s41437-019-0260-9

Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar’s hibernating dwarf lemurs
Cited by: 14
Author(s): Rachel C. Williams, Marina B. Blanco, Jelmer W. Poelstra, Kelsie E Hunnicutt, Aaron A. Comeault, Anne D. Yoder
Software Mentions: 2
Published: about 7 years ago

10.1186/s12870-015-0587-1

Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae
Cited by: 65
Author(s): Raimi Mohamed Redwan, Akzam Saidin, Vijay Kumar Subbiah
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2164-9-254

Exploiting orthologue diversity for systematic detection of gain-of-function phenotypes
Cited by: 5
Author(s): Marialuisa Martelli, Claudio Isella, Alessia Mira, Li‐Chen Fu, Daniela Cantarella, Enzo Medico
Software Mentions: 2
Published: over 18 years ago

10.1186/s12870-018-1594-9

Transciptome profiling at early infection of Elaeis guineensis by Ganoderma boninense provides novel insights on fungal transition from biotrophic to necrotrophic phase
Cited by: 27
Author(s): Mohammad Nazri Abdul Bahari, Nurshafika Mohd Sakeh, Siti Nor Akmar Abdullah, Redzyque Ramza Ramli, Saeid Kadkhodaei
Software Mentions: 2
Published: almost 8 years ago

10.1099/acmi.0.000103

First hybrid complete genome of Aeromonas veronii reveals chromosome-mediated novel structural variant mcr-3.30 from a human clinical sample
Cited by: 12
Author(s): Naveen Kumar Devanga Ragupathi, Dhiviya Prabaa Muthuirulandi Sethuvel, Shalini Anandan, Dhivya Murugan, Kalaiarasi Asokan, Ramya Gajaraj Neethi Mohan, Karthick Vasudevan, Thirumal Kumar D, George Priya Doss C, Balaji Veeraraghavan
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2229-14-99

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
Cited by: 204
Author(s): Nicola Vitulo, Claudio Forcato, Elisa Corteggiani Carpinelli, Andrea Telatin, Davide Campagna, Michela D’Angelo, Rosanna Zimbello, Massimiliano Corso, Alessandro Vannozzi, Claudio Bonghi, Margherita Lucchin, Giorgio Valle
Software Mentions: 2
Published: over 12 years ago

10.1186/s13073-018-0574-x

Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia
Cited by: 42
Author(s): Stefano Giulieri, Sarah L. Baines, Romain Guérillot, Torsten Seemann, Anders Gonçalves da Silva, Mark B. Schultz, Ruth C. Massey, Natasha E Holmes, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 2
Published: about 8 years ago

10.1093/gbe/evz266

Evolutionary History of the Toll-Like Receptor Gene Family across Vertebrates
Cited by: 64
Author(s): Guangshuai Liu, Huanxin Zhang, Chao Zhao, Honghai Zhang
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13073-015-0259-7

Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network
Cited by: 58
Author(s): Hayley J. Brodrick, Kathy E. Raven, Ewan M. Harrison, Beth Blane, Sandra Reuter, M. Estée Török, Julian Parkhill, Sharon J. Peacock
Software Mentions: 2
Published: over 10 years ago

10.1111/gbi.12316

A combined lipidomic and 16S <scp>rRNA</scp> gene amplicon sequencing approach reveals archaeal sources of intact polar lipids in the stratified Black Sea water column
Cited by: 49
Author(s): Martina Sollai, Laura Villanueva, Ellen C. Hopmans, Gert‐Jan Reichart, Jaap S. Sinninghe Damsté
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12870-019-1882-z

Ethylene-mediated improvement in sucrose accumulation in ripening sugarcane involves increased sink strength
Cited by: 33
Author(s): Zhongliang Chen, Cui-Xian Qin, Miao Wang, Fang Liao, Qing Liao, Xihui Liu, Yang‐Rui Li, Prakash Lakshmanan, M. I. E. Long, Dongliang Huang
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-021-08001-6

Revelation of candidate genes and molecular mechanism of reproductive seasonality in female rohu (Labeo rohita Ham.) by RNA sequencing
Cited by: 2
Author(s): Sarika Jaiswal, Samiran Nandi, Mir Asif Iquebal, Rahul Singh Jasrotia, Swagat Kumar Patra, Gayatri Mishra, Uday Kumar Udit, Dinesh Kumar Sahu, U. B. Angadi, Prem Kumar Meher, P. Routray, Jitendra Kumar Sundaray, Deepti Verma, Paramananda Das, P. Jayasankar, Anil Rai, Dinesh Kumar
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13059-020-01980-x

Diverse genetic mechanisms underlie worldwide convergent rice feralization
Cited by: 47
Author(s): Jie Qiu, Jia Lu, Dongya Wu, Xifang Weng, Lijuan Chen, Jian Sun, Meihong Chen, Limin Mao, Bowen Jiang, Chu-Yu Ye, Guilherme Menegol Turra, Longbiao Guo, Guoyou Ye, Qian Zhu, Toshiyuki Imaizumi, Beng Kah Song, Laura Scarabel, Aldo Merotto, Kenneth M. Olsen, Longjiang Fan
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-018-1525-9

Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr
Cited by: 7
Author(s): Yi Gan, Yu Song, Yadong Chen, Hongbo Liu, Dongdong Yang, Qian-Yu XU, Zhifu Zheng
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12870-015-0636-9

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil
Cited by: 21
Author(s): Emmanuel González, Nicholas J. B. Brereton, Julie Marleau, Werther Guidi Nissim, Michel Labrecque, Frédéric E. Pitre, Simon Joly
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2148-7-71

Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species
Cited by: 59
Author(s): Radhey S. Gupta, Emily Lorenzini
Software Mentions: 2
Published: over 19 years ago

10.1186/s13059-016-0915-2

CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries
Cited by: 64
Author(s): Florian Heigwer, Tianzuo Zhan, Marco Breinig, J. Winter, Dirk Brügemann, Svenja Leible, Michael Boutros
Software Mentions: 2
Published: over 10 years ago

10.1186/s12870-021-02850-9

Reduced expression of a subunit gene of sucrose non-fermenting 1 related kinase, PpSnRK1βγ, confers flat fruit abortion in peach by regulating sugar and starch metabolism
Cited by: 1
Author(s): Jian Guo, Ke Cao, Jia‐Long Yao, Cecilia Deng, Yong Li, Guoqiang Zhu, Weichao Fang, Chang Wen Chen, Xinwei Wang, Jinlong Wu, Wen‐Wu Guo, Lirong Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s13071-019-3770-7

Whole-genome sequencing of ocular Chlamydia trachomatis isolates from Gadarif State, Sudan
Cited by: 9
Author(s): Abdulazeem Abdulsalam Ibrahim Alkhidir, Martin J. Holland, Wafa Ibrahim Elhag, Charlotte A. Williams, Judith Breuer, Abdah Elfatih Elemam, Khalid Mohamed Khalid El Hussain, Mohammed E. H. Ournasseir, Harry Pickering
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12711-018-0442-6

Copy number variation in the MSRB3 gene enlarges porcine ear size through a mechanism involving miR-584-5p
Cited by: 26
Author(s): Congying Chen, Chenlong Liu, Xinwei Xiong, Shouguo Fang, Hui Yang, Zhiyan Zhang, Jun Ren, Yuanmei Guo, Lusheng Huang
Software Mentions: 2
Published: almost 8 years ago

10.1186/gb-2007-8-1-r9

Cited by: 52
Author(s): John Wang, Stephanie Jemielity, Paolo Uva, Yannick Wurm, Johannes Gräff, Laurent Keller
Software Mentions: 2
Published: over 19 years ago

10.1186/s12870-017-0983-9

Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s
Cited by: 47
Author(s): LI Xu-yan, Xin Xie, Ji Li, Yuhai Cui, Yanming Hou, Lulu Zhai, Xiao Wang, Yanli Fu, Ranran Liu, Shaomin Bian
Software Mentions: 2
Published: over 9 years ago

10.3390/genes12050704

CmNAC73 Mediates the Formation of Green Color in Chrysanthemum Flowers by Directly Activating the Expression of Chlorophyll Biosynthesis Genes HEMA1 and CRD1
Cited by: 11
Author(s): Luo Jia, Huan Wang, Sijia Chen, Shengjing Ren, Hansen Fu, Ruirui Li, Caiyun Wang
Software Mentions: 2
Published: over 5 years ago

10.3390/genes10030219

DNA Methylation Patterns in the Round Goby Hypothalamus Support an On-The-Spot Decision Scenario for Territorial Behavior
Cited by: 10
Author(s): Vincent Somerville, Michaela Schwaiger, Philipp Hirsch, Jean‐Claude Walser, Karen Bussmann, Alexandra Weyrich, Patricia Burkhardt‐Holm, Irene Adrian‐Kalchhauser
Software Mentions: 2
Published: over 7 years ago

10.3390/v13020193

Investigating the Diversity and Host Range of Novel Parvoviruses from North American Ducks Using Epidemiology, Phylogenetics, Genome Structure, and Codon Usage Analysis
Cited by: 10
Author(s): Marta Canuti, Joost T. P. Verhoeven, Hannah J. Munro, Sheena Roul, Davor Ojkić, Gregory J. Robertson, Hugh Whitney, Suzanne C. Dufour, Andrew S. Lang
Software Mentions: 2
Published: over 5 years ago

10.3390/genes10020081

Complete Genome Sequence Analysis and Characterization of Selected Iron Regulation Genes of Pasteurella Multocida Serotype A Strain PMTB2.1
Cited by: 7
Author(s): Shagufta Jabeen, Huan Yong Yap, Faez Firdaus Jesse Abdullah, Zunita Zakaria, Nurulfiza Mat Isa, Yung-Chie Tan, Yap S Joo, Dilan Amila Satharasinghe, Abdul Rahman Omar
Software Mentions: 2
Published: over 7 years ago

10.1186/s12870-021-03024-3

Genome-wide identification and functional analysis of U-box E3 ubiquitin ligases gene family related to drought stress response in Chinese white pear (Pyrus bretschneideri)
Cited by: 18
Author(s): Chunmeng Wang, Bobo Song, Yuqin Dai, Shaoling Zhang, Xiaosan Huang
Software Mentions: 2
Published: over 5 years ago

10.3390/v11050419

Revisiting the Role of Transcription Factors in Coordinating the Defense Response Against Citrus Bark Cracking Viroid Infection in Commercial Hop (Humulus Lupulus L.)
Cited by: 20
Author(s): Vishnu Sukumari Nath, Ajay Kumar Mishra, Atul Kumar, J. Matoušek, Jernej Jakše
Software Mentions: 2
Published: over 7 years ago

10.3390/genes9060278

RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis
Cited by: 3
Author(s): Xin Chen, Anjun Ma, Adam McDermaid, Han-Yuan Zhang, Chao Liu, Huansheng Cao, Qin Ma
Software Mentions: 2
Published: over 8 years ago

10.3390/genes9100510

Genome-Wide Identification and Characterization of wALOG Family Genes Involved in Branch Meristem Development of Branching Head Wheat
Cited by: 6
Author(s): Wenzhi Nan, Shandang Shi, Diddugodage Chamila Jeewani, Li Quan, Song Xue, Zhonghua Wang
Software Mentions: 2
Published: almost 8 years ago

10.1080/21505594.2021.1878743

The transcription factor Ndt80 is a repressor of Candida parapsilosis virulence attributes
Cited by: 5
Author(s): Joana Branco, Cláudia Martins-Cruz, Lisa Rodrigues, Raquel M. Silva, Nuno Araújo‐Gomes, Teresa Gonçalves, Isabel M. Miranda, Acácio G. Rodrigues
Software Mentions: 2
Published: over 5 years ago

10.1080/21505594.2017.1384895

Galleria mellonella as an infection model to investigate virulence of Vibrio parahaemolyticus
Cited by: 38
Author(s): Sariqa Wagley, Richard Borne, Jamie Harrison, Craig Baker‐Austin, Donatella Ottaviani, Francesca Leoni, Varaporn Vuddhakul, Richard W. Titball
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2164-15-1022

Genome-wide mapping of matrix attachment regions in Drosophila melanogaster
Cited by: 27
Author(s): Rashmi U. Pathak, Arumugam Srinivasan, Rakesh K. Mishra
Software Mentions: 2
Published: almost 12 years ago

10.1534/g3.120.401205

Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (Betta splendens) in a University Master’s Course
Cited by: 11
Author(s): Stefan Prost, Malte Petersen, Martin Grethlein, Sarah Joy Hahn, Nina Kuschik-Maczollek, Martyna Ewa Olesiuk, Jan-Olaf Reschke, Tamara Elke Schmey, Caroline Zimmer, Deepak Kumar Gupta, Tilman Schell, Raphael T. F. Coimbra, Jordi de Raad, Fritjof Lammers, Sven Winter, Axel Janke
Software Mentions: 2
Published: about 6 years ago

10.3390/genes8120385

High-Throughput Sequencing of Small RNA Transcriptomes in Maize Kernel Identifies miRNAs Involved in Embryo and Endosperm Development
Cited by: 15
Author(s): Lijuan Xing, Ming Zhu, Min Zhang, Wenzong Li, Haiyang Jiang, Junjie Zou, Lei Wang, Miaoyun Xu
Software Mentions: 2
Published: almost 9 years ago

10.1534/g3.115.018382

Identification of Reproduction-Related Gene Polymorphisms Using Whole Transcriptome Sequencing in the Large White Pig Population
Cited by: 30
Author(s): Daniel Fischer, Asta Laiho, Attila Gyenesei
Software Mentions: 2
Published: about 11 years ago

10.1186/s12870-019-1908-6

Time-series transcriptome provides insights into the gene regulation network involved in the volatile terpenoid metabolism during the flower development of lavender
Cited by: 32
Author(s): Hui Li, Jingrui Li, Yanmei Dong, Haiping Hao, Zhengyi Ling, Hongtong Bai, Huafang Wang, Hongxia Cui, Lei Shi
Software Mentions: 2
Published: about 7 years ago

10.1186/s12983-017-0225-x

Comparative genomics analyses of alpha-keratins reveal insights into evolutionary adaptation of marine mammals
Cited by: 17
Author(s): Xiaohui Sun, Zhang Zepeng, Yingying Sun, Jing Li, Shixia Xu, Guang Yang
Software Mentions: 2
Published: about 9 years ago

10.1099/mgen.0.000196

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Cited by: 162
Author(s): Margaret M C Lam, Ryan R. Wick, Kelly L. Wyres, Claire L. Gorrie, Louise M. Judd, Adam Jenney, Sylvain Brisse, Kathryn E. Holt
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2016.00488

Genetic Adaptation of Giant Lobelias (Lobelia aberdarica and Lobelia telekii) to Different Altitudes in East African Mountains
Cited by: 8
Author(s): Shu Ying Zhao, Ling Yun Chen, John K. Muchuku, Guang Hu, Qing Feng Wang
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2017.01519

Identification and Expression Profile of CYPome in Perennial Ryegrass and Tall Fescue in Response to Temperature Stress
Cited by: 29
Author(s): Tao Xiang, Mingxiu Wang, Yan Dai, Yan Wang, Yan-Fen Fan, Ping Mao, Xinrong Ma
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2015.01086

De novo Transcriptome Assembly of a Chinese Locoweed (Oxytropis ochrocephala) Species Provides Insights into Genes Associated with Drought, Salinity, and Cold Tolerance
Cited by: 18
Author(s): Wei He, Zhuang Hu, Yànpíng Fù, Linwei Guo, Bin Guo, Lizhu Guo, Xiuhong Zhang, Yahui Wei
Software Mentions: 2
Published: almost 11 years ago

10.1534/g3.116.038448

Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi
Cited by: 21
Author(s): Pierre‐Yves Dupont, Murray P. Cox
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2020.570915

Expression of LhFT1, the Flowering Inducer of Asiatic Hybrid Lily, in the Bulb Scales
Cited by: 5
Author(s): Kana Kurokawa, Junya Kobayashi, Keiichirou Nemoto, Akira Nozawa, Tatsuya Sawasaki, Takashi Nakatsuka, Masumi Yamagishi
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2019.00983

Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves
Cited by: 29
Author(s): Kai Zou, Xueduan Liu, Zhenmin Du, Qin Yang, Shaodong Fu, Delong Meng, Wen-Qi Chang, Rui Li, Huaqun Yin, Yili Liang
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2016.02058

A Comprehensive Prescription for Plant miRNA Identification
Cited by: 38
Author(s): Burcu Alptekin, Bala Anı Akpınar, Hikmet Budak
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-014-0316-1

Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process
Cited by: 80
Author(s): Mehar Hasan Asif, Deepika Lakhwani, Sumya Pathak, Parul Gupta, Sumit K. Bag, Paras Nath, Prabodh Kumar Trivedi
Software Mentions: 2
Published: almost 12 years ago

10.1099/mgen.0.000279

Domestication of Campylobacter jejuni NCTC 11168
Cited by: 21
Author(s): Ben Pascoe, Lisa Williams, Jessica K. Calland, Guillaume Méric, Matthew D. Hitchings, Myles Dyer, Joseph Ryder, Sophie Shaw, Bruno Silvester Lopes, Cosmin Chintoan-Uta, Elaine Allan, Ana Maria Centola Vidal, Catherine Fearnley, Paul Everest, Justin A. Pachebat, Tristan A Cogan, Mark P. Stevens, T. J. Humphrey, Thomas S. Wilkinson, Alison J. Cody, Frances M. Colles, Keith A. Jolley, Martin C. J. Maiden, Norval James Colin Strachan, Bruce M. Pearson, Dennis Linton, Brendan W. Wren, Julian Parkhill, David J. Kelly, Arnoud H. M. van Vliet, Ken J. Forbes, Samuel K. Sheppard
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-019-5545-0

An insight into the sialotranscriptome and virome of Amazonian anophelines
Cited by: 21
Author(s): Vera Margarete Scarpassa, Humberto Julio Debat, Ronildo Baiatone Alencar, José Ferreira Saraiva, Eric Calvo, Bruno Arcà, José M. C. Ribeiro
Software Mentions: 2
Published: over 7 years ago

10.15252/msb.202110302

Spurious regulatory connections dictate the expression‐fitness landscape of translation factors
Cited by: 6
Author(s): Jean-Benoît Lalanne, Darren J. Parker, Gene-Wei Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.714305

Insights Into the Molecular Evolution of AT-Hook Motif Nuclear Localization Genes in Brassica napus
Cited by: 7
Author(s): Weimeng Zhang, Dongdong Fang, Xiuzhu Cheng, Jun Cao, Xiao‐Li Tan
Software Mentions: 2
Published: about 5 years ago

10.1534/g3.117.043083

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size
Cited by: 20
Author(s): David L. Oldeschulte, Yvette A. Halley, Miranda Wilson, Eric K. Bhattarai, Wesley Brashear, Joshua A. Hill, Richard P. Metz, Charles D. Johnson, Dale Rollins, Markus J. Peterson, Derek M. Bickhart, Jared E. Decker, John F. Sewell, Christopher M. Seabury
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2017.01653

Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly
Cited by: 18
Author(s): H Busra Cagirici, Sezgi Biyiklioglu, Hikmet Budak
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2021.712254

Identification and Characterization of Secondary Wall-Associated NAC Genes and Their Involvement in Hormonal Responses in Tobacco (Nicotiana tabacum)
Cited by: 5
Author(s): Na Xu, Lin Meng, Lin Song, Xiaoxu Li, Shanshan Du, Fengqin Hu, Yuanda Lv, Wenjing Song
Software Mentions: 2
Published: about 5 years ago

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