pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/1745-6150-1-12

Cited by: 10
Author(s): Dimitris Papamichail, Nicholas Delihas
Software Mentions: 2
Published: over 19 years ago

Efficacy of Phage Therapy in Controlling Rabbit Colibacillosis and Changes in Cecal Microbiota
Cited by: 19
Author(s): Jian Zhao, Yan Liu, Chen Xiao, Shaojie He, Huochun Yao, Guolian Bao
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2017.01098

Marine Group II Dominates Planktonic Archaea in Water Column of the Northeastern South China Sea
Cited by: 28
Author(s): Haodong Liu, Chuanlun L. Zhang, Chunyan Yang, Songze Chen, Zhiwei Cao, Zhiwei Zhang, Jie Tian
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2164-13-221

Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses
Cited by: 46
Author(s): Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, Philippe Lecomte, Ingrid Mercier, Hélène Bergès, Caroline Pont, A. Blanco, Jérôme Salse
Software Mentions: 2
Published: about 13 years ago

10.1007/s13205-014-0238-5

Diversified diazotrophs associated with the rhizosphere of Western Indian Himalayan native red kidney beans (Phaseolus vulgaris L.)
Cited by: 24
Author(s): Deep Chandra Suyal, Amit Yadav, Yogesh S. Shouche
Software Mentions: 2
Published: about 11 years ago

10.1186/s13062-016-0144-3

Compartmentalization in PVC super-phylum: evolution and impact
Cited by: 15
Author(s): Sandrine Pinos, Pierre Pontarotti, Didier Raoult, Jean-Pierre Baudoin, Isabelle Pagnier
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2018.01982

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils
Cited by: 21
Author(s): Ngoc‐Loi Nguyen, Woon-Jong Yu, Joo-Han Gwak, So-Jeong Kim, Soo-Je Park, Craig W. Herbold, Jong-Geol Kim, Man‐Young Jung, Sung‐Keun Rhee
Software Mentions: 2
Published: almost 7 years ago

10.1099/mgen.0.000598

A global transcriptomic analysis of Staphylococcus aureus biofilm formation across diverse clonal lineages
Cited by: 16
Author(s): Brooke R Tomlinson, Morgan E Malof, Lindsey N. Shaw
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2018.01591

Study the Features of 57 Confirmed CRISPR Loci in 38 Strains of Staphylococcus aureus
Cited by: 34
Author(s): Xihong Zhao, Zhixue Yu, Zhenbo Xu
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-014-1205-6

Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes
Cited by: 39
Author(s): Jan M. Meyer, Christian Rödelsperger, Karsten Eichholz, Urban Tillmann, Allan Cembella, Angela McGaughran, Uwe John
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-015-1737-4

Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress
Cited by: 22
Author(s): Valeria Wallace-Salinas, Daniel P. Brink, Dag Ahrén, Marie-Françoise Gorwa-Grauslund
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2164-12-283

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing
Cited by: 64
Author(s): Anna W. Santure, Jacob Gratten, Jim A. Mossman, Ben C. Sheldon, Jon Slate
Software Mentions: 2
Published: about 14 years ago

10.1186/1472-6807-7-10

Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
Cited by: 70
Author(s): D.J. Ferraro, Eric N. Brown, Chung Huang Yu, Rebecca E. Parales, David T. Gibson, S. Ramaswamy
Software Mentions: 2
Published: over 18 years ago

10.1186/s12864-016-3266-1

Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii
Cited by: 31
Author(s): Yan Zhu, Longxian Chen, Chengjun Zhang, Pei Hao, Xinyun Jing, Xuan Li
Software Mentions: 2
Published: over 8 years ago

10.1186/s13104-015-1683-x

Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates
Cited by: 1
Author(s): Mbaye Tine
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2015.00597

Anaerobic digestion of the microalga Spirulina at extreme alkaline conditions: biogas production, metagenome, and metatranscriptome
Cited by: 53
Author(s): Vímac Nolla-Ardèvol, Marc Strous, Halina E. Tegetmeyer
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2020.597686

Wenzhouxiangella Strain AB-CW3, a Proteolytic Bacterium From Hypersaline Soda Lakes That Preys on Cells of Gram-Positive Bacteria
Cited by: 12
Author(s): Dimitry Y. Sorokin, Damon Mosier, Jackie Zorz, Xiaoli Dong, Marc Strous
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2017.00202

Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4
Cited by: 69
Author(s): Patrick Rast, Ines Glöckner, Christian Boedeker, Olga Jeske, Sandra Wiegand, Richard Reinhardt, Peter Schümann, Manfred Rohde, Stefan Spring, Frank Oliver Glöckner, Christian Jogler, Mareike Jogler
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-13-621

Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major
Cited by: 37
Author(s): Vijayendran Gowri, Indira Ghosh, Amit Sharma, Rentala Madhubala
Software Mentions: 2
Published: over 12 years ago

10.1186/1753-6561-3-S4-S14

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
Cited by: 11
Author(s): Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornshøj, Magali SanCristobal, Pierre Mormède, Dirk-Jan de Koning
Software Mentions: 2
Published: about 16 years ago

10.1186/s12870-019-1785-z

Development and characterisation of interspecific hybrid lines with genome-wide introgressions from Triticum timopheevii in a hexaploid wheat background
Cited by: 21
Author(s): Uma Devi, Surbhi Grewal, Caiyun Yang, Stella Hubbart‐Edwards, Duncan Scholefield, Stephen Ashling, Amanda Burridge, Ian P. King, Julie King
Software Mentions: 2
Published: about 6 years ago

10.1186/s12870-020-2239-3

Genome-wide identification and analysis of B-BOX gene family in grapevine reveal its potential functions in berry development
Cited by: 40
Author(s): Hongru Wei, Peipei Wang, Jianqing Chen, Changjun Li, Yongzhang Wang, Yuan Yang, Jinggui Fang, Xiangpeng Leng
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2016.00875

DGV: Dengue Genographic Viewer
Cited by: 16
Author(s): Akifumi Yamashita, Tetsuya Sakamoto, Tsuyoshi Sekizuka, Kengo Kato, Tomohiko Takasaki, Makoto Kuroda
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2018.01925

Characterization of ML-005, a Novel Metaproteomics-Derived Esterase
Cited by: 6
Author(s): Premankur Sukul, Natalie Lupilov, Lars I. Leichert
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12870-015-0587-1

Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae
Cited by: 65
Author(s): Raimi Mohamed Redwan, Akzam Saidin, Vijay Kumar Subbiah
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2164-9-254

Exploiting orthologue diversity for systematic detection of gain-of-function phenotypes
Cited by: 5
Author(s): Marialuisa Martelli, Claudio Isella, Alessia Mira, Li‐Chen Fu, Daniela Cantarella, Enzo Medico
Software Mentions: 2
Published: about 17 years ago

10.3389/fimmu.2021.646159

Development of Stable Chimeric IL-15 for Trans-Presentation by the Antigen Presenting Cells
Cited by: 3
Author(s): Manoj Patidar, Naveen Yadav, Sarat K. Dalai
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-018-1594-9

Transciptome profiling at early infection of Elaeis guineensis by Ganoderma boninense provides novel insights on fungal transition from biotrophic to necrotrophic phase
Cited by: 27
Author(s): Mohammad Nazri Abdul Bahari, Nurshafika Mohd Sakeh, Siti Nor Akmar Abdullah, Redzyque Ramza Ramli, Saeid Kadkhodaei
Software Mentions: 2
Published: over 6 years ago

10.1099/acmi.0.000103

First hybrid complete genome of Aeromonas veronii reveals chromosome-mediated novel structural variant mcr-3.30 from a human clinical sample
Cited by: 12
Author(s): Naveen Kumar Devanga Ragupathi, Dhiviya Prabaa Muthuirulandi Sethuvel, Shalini Anandan, Dhivya Murugan, Kalaiarasi Asokan, Ramya Gajaraj Neethi Mohan, Karthick Vasudevan, Thirumal Kumar D, George Priya Doss C, Balaji Veeraraghavan
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2229-14-99

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
Cited by: 204
Author(s): Nicola Vitulo, Claudio Forcato, Elisa Corteggiani Carpinelli, Andrea Telatin, Davide Campagna, Michela D’Angelo, Rosanna Zimbello, Massimiliano Corso, Alessandro Vannozzi, Claudio Bonghi, Margherita Lucchin, Giorgio Valle
Software Mentions: 2
Published: over 11 years ago

10.1099/mgen.0.000279

Domestication of Campylobacter jejuni NCTC 11168
Cited by: 21
Author(s): Ben Pascoe, Lisa Williams, Jessica K. Calland, Guillaume Méric, Matthew D. Hitchings, Myles Dyer, Joseph Ryder, Sophie Shaw, Bruno Silvester Lopes, Cosmin Chintoan-Uta, Elaine Allan, Ana Maria Centola Vidal, Catherine Fearnley, Paul Everest, Justin A. Pachebat, Tristan A Cogan, Mark P. Stevens, T. J. Humphrey, Thomas S. Wilkinson, Alison J. Cody, Frances M. Colles, Keith A. Jolley, Martin C. J. Maiden, Norval James Colin Strachan, Bruce M. Pearson, Dennis Linton, Brendan W. Wren, Julian Parkhill, David J. Kelly, Arnoud H. M. van Vliet, Ken J. Forbes, Samuel K. Sheppard
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-019-5545-0

An insight into the sialotranscriptome and virome of Amazonian anophelines
Cited by: 21
Author(s): Vera Margarete Scarpassa, Humberto Julio Debat, Ronildo Baiatone Alencar, José Ferreira Saraiva, Eric Calvo, Bruno Arcà, José M. C. Ribeiro
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2018.00013

Differing House Finch Cytokine Expression Responses to Original and Evolved Isolates of Mycoplasma gallisepticum
Cited by: 20
Author(s): Michal Vinkler, Ariel E Leon, Laila T. Kirkpatrick, Rami A. Dalloul, Dana M. Hawley
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2016.00797

Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile “Ferrovum”
Cited by: 36
Author(s): Sophie R. Ullrich, Carolina González, Anja Poehlein, Judith S. Tischler, Rolf Daniel, Michael Schlömann, David S. Holmes, Martin Mühling
Software Mentions: 2
Published: about 9 years ago

10.3389/fgene.2018.00012

Identification and Expression Analysis of Wheat TaGF14 Genes
Cited by: 12
Author(s): Jun Guo, Shuang Dai, Haosheng Li, Aifeng Liu, Cheng Liu, Dungong Cheng, Xinyou Cao, Xiusheng Chu, Shengnan Zhai, Jianjun Li, Zhendong Zhao, Song Jiang
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2021.620009

Comprehensive Pathogen Identification, Antibiotic Resistance, and Virulence Genes Prediction Directly From Simulated Blood Samples and Positive Blood Cultures by Nanopore Metagenomic Sequencing
Cited by: 9
Author(s): Mu Zhou, Yarong Wu, Timothy Kudinha, Peng Jia, Lei Wang, Yingchun Xu
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2021.676751

Telomere Roles in Fungal Genome Evolution and Adaptation
Cited by: 11
Author(s): Mostafa Rahnama, Baohua Wang, Jane Dostart, О. С. Новікова, Daniel Yackzan, Andrew T. Yackzan, Haley Bruss, Maray Baker, Haven Jacob, Xiaofei Zhang, April Lamb, A. Keith Stewart, Melanie Heist, Joey Hoover, Patrick J. Calie, Li Chen, Jinze Liu, Mark L. Farman
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2020.00557

Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasitica
Cited by: 5
Author(s): Franck Panabières, Corinne Rancurel, Martine Da Rocha, Marie-Line Kühn
Software Mentions: 2
Published: about 5 years ago

10.1186/s12870-019-1882-z

Ethylene-mediated improvement in sucrose accumulation in ripening sugarcane involves increased sink strength
Cited by: 33
Author(s): Zhongliang Chen, Cui-Xian Qin, Miao Wang, Fang Liao, Qing Liao, Xihui Liu, Yang‐Rui Li, Prakash Lakshmanan, M. I. E. Long, Dongliang Huang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-021-08001-6

Revelation of candidate genes and molecular mechanism of reproductive seasonality in female rohu (Labeo rohita Ham.) by RNA sequencing
Cited by: 2
Author(s): Sarika Jaiswal, Samiran Nandi, Mir Asif Iquebal, Rahul Singh Jasrotia, Swagat Kumar Patra, Gayatri Mishra, Uday Kumar Udit, Dinesh Kumar Sahu, U. B. Angadi, Prem Kumar Meher, P. Routray, Jitendra Kumar Sundaray, Deepti Verma, Paramananda Das, P. Jayasankar, Anil Rai, Dinesh Kumar
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2020.590475

Identification and Expression Analysis of Long Non-coding RNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans Infection
Cited by: 12
Author(s): Xinyi Zhang, Tao Zhou, Baohua Chen, Haili Bai, Yulin Bai, Ji Zhao, Fei Pu, Yidi Wu, Chen Lin, You Shi, Qiaozhen Ke, Weiqiang Zheng, Jia Chen, Peng Xu
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-018-1525-9

Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr
Cited by: 7
Author(s): Yi Gan, Yu Song, Yadong Chen, Hongbo Liu, Dongdong Yang, Qian-Yu XU, Zhifu Zheng
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-015-0636-9

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil
Cited by: 21
Author(s): Emmanuel González, Nicholas J. B. Brereton, Julie Marleau, Werther Guidi Nissim, Michel Labrecque, Frédéric E. Pitre, Simon Joly
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2148-7-71

Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species
Cited by: 59
Author(s): Radhey S. Gupta, Emily Lorenzini
Software Mentions: 2
Published: over 18 years ago

10.3389/fcell.2021.657192

Loss of stra8 Increases Germ Cell Apoptosis but Is Still Compatible With Sperm Production in Atlantic Salmon (Salmo salar)
Cited by: 5
Author(s): Kai Ove Skaftnesmo, Diego Crespo, Lene Kleppe, Eva Andersson, Rolf B. Edvardsen, Birgitta Norberg, Per Gunnar Fjelldal, Tom Hansen, Rüdiger Schulz, Anna Wargelius
Software Mentions: 2
Published: over 4 years ago

10.3390/foods9091194

Determining the Authenticity of Shark Meat Products by DNA Sequencing
Cited by: 23
Author(s): Patrizia Marchetti, Anna Mottola, Roberta Piredda, Giuseppina Ciccarese, Angela Di Pinto
Software Mentions: 2
Published: almost 5 years ago

10.3389/fnbeh.2020.00160

Blast-Related Mild TBI Alters Anxiety-Like Behavior and Transcriptional Signatures in the Rat Amygdala
Cited by: 19
Author(s): Jennifer Blaze, Inbae Choi, Zhaoyu Wang, Michelle Umali, Natalia Mendelev, Anna E. Tschiffely, Stephen T. Ahlers, Gregory A. Elder, Yongchao Ge, Fatemeh Haghighi
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcell.2020.00649

Identification of a TLR-Induced Four-lncRNA Signature as a Novel Prognostic Biomarker in Esophageal Carcinoma
Cited by: 14
Author(s): Jing Liu, Han Li, Yanjie Chu, Ruiling Xu, Dekai Zhang, Xinhong Wang
Software Mentions: 2
Published: about 5 years ago

10.1111/1574-6941.12084

Microbial community potentially responsible for acid and metal release from an Ostrobothnian acid sulfate soil
Cited by: 30
Author(s): Xiaofen Wu, Zhen Lim Wong, Pekka Stén, Sten Engblom, Peter Österholm, Mark Dopson
Software Mentions: 2
Published: over 12 years ago

10.1002/2211-5463.12022

Analysis of nucleotide diphosphate sugar dehydrogenases reveals family and group‐specific relationships
Cited by: 4
Author(s): Nicholas Freas, Peter W. Newton, John Perozich
Software Mentions: 2
Published: over 9 years ago

10.1002/fsn3.2153

Spectroscopic and in silico investigation of the interaction between GH1 β‐glucosidase and ginsenoside Rb 1
Cited by: 8
Author(s): Shuning Zhong, Yan Mi, Haifeng Zou, Ping Zhao, Haiqing Ye, Tiehua Zhang, Can Zhao
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-017-0983-9

Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s
Cited by: 47
Author(s): LI Xu-yan, Xin Xie, Ji Li, Yuhai Cui, Yanming Hou, Lulu Zhai, Xiao Wang, Yanli Fu, Ranran Liu, Shaomin Bian
Software Mentions: 2
Published: over 8 years ago

10.1002/2211-5463.12972

Recombinant transgelin‐like protein 1 fromMytilusshell induces formation of CaCO3polymorphic crystalsin vitro
Cited by: 1
Author(s): Yuting Jiang, Qi Sun, Meihua Fan, Jianyu He, Xiaolin Zhang, Hao Xu, Zhi Liao
Software Mentions: 2
Published: almost 5 years ago

10.1002/fsn3.2468

Gastrointestinal transit tolerance, cell surface hydrophobicity, and functional attributes of Lactobacillus Acidophilus strains isolated from Indigenous Dahi
Cited by: 12
Author(s): Wajiha Farid, Tariq Masud, Aamir Sohail, Nazir Ahmad, Syed Muhammad Saqlan Naqvi, Sipper Khan, Amjad Ali, S. A. Khalifa, Abid Hussain, Sartaj Ali, Maryum Saghir, Azhari Siddeeg, Muhammad Faisal Manzoor
Software Mentions: 2
Published: about 4 years ago

10.3390/v13030481

Olea Europaea Geminivirus: A Novel Bipartite Geminivirid Infecting Olive Trees
Cited by: 13
Author(s): Michela Chiumenti, C. Greco, A. De Stradis, Giuliana Loconsole, Vincenzo Cavalieri, Giuseppe Altamura, Stefania Zicca, P. Saldarelli, María Saponari
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-213X-4-11

Regulation of signaling genes by TGFβ during entry into dauer diapause in C. elegans
Cited by: 74
Author(s): Tao Liu, Karen K. Zimmerman, Garth I. Patterson
Software Mentions: 2
Published: almost 21 years ago

10.3390/v13020193

Investigating the Diversity and Host Range of Novel Parvoviruses from North American Ducks Using Epidemiology, Phylogenetics, Genome Structure, and Codon Usage Analysis
Cited by: 10
Author(s): Marta Canuti, Joost T. P. Verhoeven, Hannah J. Munro, Sheena Roul, Davor Ojkić, Gregory J. Robertson, Hugh Whitney, Suzanne C. Dufour, Andrew S. Lang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-021-03024-3

Genome-wide identification and functional analysis of U-box E3 ubiquitin ligases gene family related to drought stress response in Chinese white pear (Pyrus bretschneideri)
Cited by: 18
Author(s): Chunmeng Wang, Bobo Song, Yuqin Dai, Shaoling Zhang, Xiaosan Huang
Software Mentions: 2
Published: about 4 years ago

10.3390/v11050419

Revisiting the Role of Transcription Factors in Coordinating the Defense Response Against Citrus Bark Cracking Viroid Infection in Commercial Hop (Humulus Lupulus L.)
Cited by: 20
Author(s): Vishnu Sukumari Nath, Ajay Kumar Mishra, Atul Kumar, J. Matoušek, Jernej Jakše
Software Mentions: 2
Published: about 6 years ago

10.1111/eva.13239

Natural CO2 seeps reveal adaptive potential to ocean acidification in fish
Cited by: 8
Author(s): Natalia Petit-Marty, Ivan Nagelkerken, Sean D. Connell, Celia Schunter
Software Mentions: 2
Published: about 4 years ago

10.12688/f1000research.10040.1

YeATSAM analysis of the walnut and chickpea transcriptome reveals key genes undetected by current annotation tools
Cited by: 8
Author(s): Sandeep Chakraborty, Pedro Manuel Martínez-García, Abhaya M. Dandekar
Software Mentions: 2
Published: over 8 years ago

10.1111/1462-2920.13036

Closing the gaps on the viral photosystem‐ <scp>I</scp> psa <scp>DCAB</scp> gene organization
Cited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: almost 10 years ago

10.1111/j.1462-2920.2008.01667.x

The Cry48Aa-Cry49Aa binary toxin fromBacillus sphaericusexhibits highly restricted target specificity
Cited by: 37
Author(s): Gareth Wyn Jones, Margaret C. Wirth, R. G. Monnerat, Colin Berry
Software Mentions: 2
Published: almost 17 years ago

10.1080/21505594.2021.1878743

The transcription factor Ndt80 is a repressor of Candida parapsilosis virulence attributes
Cited by: 5
Author(s): Joana Branco, Cláudia Martins-Cruz, Lisa Rodrigues, Raquel M. Silva, Nuno Araújo‐Gomes, Teresa Gonçalves, Isabel M. Miranda, Acácio G. Rodrigues
Software Mentions: 2
Published: over 4 years ago

10.1080/21505594.2017.1384895

Galleria mellonella as an infection model to investigate virulence of Vibrio parahaemolyticus
Cited by: 38
Author(s): Sariqa Wagley, Richard Borne, Jamie Harrison, Craig Baker‐Austin, Donatella Ottaviani, Francesca Leoni, Varaporn Vuddhakul, Richard W. Titball
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-15-1022

Genome-wide mapping of matrix attachment regions in Drosophila melanogaster
Cited by: 27
Author(s): Rashmi U. Pathak, Arumugam Srinivasan, Rakesh K. Mishra
Software Mentions: 2
Published: over 10 years ago

10.1186/s13072-020-00340-0

A comprehensive overview of bull sperm-borne small non-coding RNAs and their diversity across breeds
Cited by: 29
Author(s): Eli Sellem, Sylvain Marthey, Andrea Rau, Luc Jouneau, A. Bonnet, Jean‐Philippe Perrier, Sébastien Fritz, Chrystelle Le Danvic, Mekki Boussaha, Hélène Kiefer, Hélène Jammes, Laurent Schibler
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.2028

Population genomics of local adaptation versus speciation in coral reef fishes ( Hypoplectrus spp, Serranidae)
Cited by: 31
Author(s): Sophie Picq, W. Owen McMillan, Oscar Puebla
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-019-1908-6

Time-series transcriptome provides insights into the gene regulation network involved in the volatile terpenoid metabolism during the flower development of lavender
Cited by: 32
Author(s): Hui Li, Jingrui Li, Yanmei Dong, Haiping Hao, Zhengyi Ling, Hongtong Bai, Huafang Wang, Hongxia Cui, Lei Shi
Software Mentions: 2
Published: about 6 years ago

10.1002/ece3.5708

Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze River
Cited by: 9
Author(s): Fangyuan Cheng, Qian Wang, Pierpaolo Maisano Delser, Chenhong Li
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.csbj.2017.01.002

Deep Assessment of Genomic Diversity in Cassava for Herbicide Tolerance and Starch Biosynthesis
Cited by: 14
Author(s): Jorge Duitama, Lina Kafuri, Daniel Tello, Ana Marı́a Leiva, Bernhard J. Hofinger, Sneha Datta, Zaida Lentini, Ericson Aranzales, Bradley J. Till, Hernán Ceballos
Software Mentions: 2
Published: over 8 years ago

10.1186/1743-422X-2-60

HBx M130K and V131I (T-A) mutations in HBV genotype F during a follow-up study in chronic carriers
Cited by: 27
Author(s): Bernal León, Lizeth Taylor, M C Vargas, Ronald B. Luftig, Federico J. Albertazzi, Libia Herrero, Kirsten A. Visoná
Software Mentions: 2
Published: almost 20 years ago

10.1080/22221751.2020.1773745

Genetic cluster analysis of SARS-CoV-2 and the identification of those responsible for the major outbreaks in various countries
Cited by: 45
Author(s): Xuemei Yang, Ning Dong, Edward Wai Chi Chan, Sheng Chen
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0103160

Characterization of Hepatitis C Virus Genotypes by Direct Sequencing of HCV 5′UTR Region of Isolates from Saudi Arabia
Cited by: 13
Author(s): Medhat K. Shier, Mohammad S. El-Wetidy, Hebatallah H. Ali, Mohammad M. Al‐Qattan
Software Mentions: 2
Published: almost 11 years ago

10.15252/msb.202110302

Spurious regulatory connections dictate the expression‐fitness landscape of translation factors
Cited by: 6
Author(s): Jean-Benoît Lalanne, Darren J. Parker, Gene-Wei Li
Software Mentions: 2
Published: over 4 years ago

10.1155/2019/3780245

Iterative Variable Gene Discovery from Whole Genome Sequencing with a Bootstrapped Multiresolution Algorithm
Cited by: 1
Author(s): David N. Olivieri, Francisco Gambón-Deza
Software Mentions: 2
Published: over 6 years ago

10.1080/22221751.2018.1563455

Detection of human parvovirus 4 DNA in the patients with acute encephalitis syndrome during seasonal outbreaks of the disease in Gorakhpur, India
Cited by: 6
Author(s): Vidya A. Arankalle, Navin Srivastava, K. P. Kushwaha, Agnibha Sen, Ashwini Y. Ramdasi, Priyanka Patel, Sumeet Kuthe, Bangari Haldipur, Gajanan N. Sakpal, Kavita S. Lole, Nilesh Ingle
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-015-2014-2

Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development
Cited by: 89
Author(s): Chunying Kang, Zhongchi Liu
Software Mentions: 2
Published: almost 10 years ago

10.1111/mpp.12346

Identification of pathogenicity‐related genes in Fusarium oxysporum f. sp. cepae
Cited by: 91
Author(s): Andrew Taylor, Viktória Vágány, Alison C. Jackson, Richard J. Harrison, Alessandro Rainoni, John P. Clarkson
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0000169

Vertebrate Vitellogenin Gene Duplication in Relation to the “3R Hypothesis”: Correlation to the Pelagic Egg and the Oceanic Radiation of Teleosts
Cited by: 181
Author(s): Roderick Nigel Finn, Børge André Kristoffersen
Software Mentions: 2
Published: over 18 years ago

10.1371/journal.pone.0179027

Transcriptome profiling analysis reveals the role of silique in controlling seed oil content in Brassica napus
Cited by: 7
Author(s): Ke-Lin Huang, Zhang Mei-li, Guangjing Ma, Huan Wu, Xiaoming Wu, Feng Ren, Xuebao Li
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0208735

Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016
Cited by: 8
Author(s): Vaishnavi Pattabiraman, Lee S. Katz, Jessica C. Chen, Andre McCullough, Eija Trees
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0099492

A 14.7 kDa Protein from Francisella tularensis subsp. novicida (Named FTN_1133), Involved in the Response to Oxidative Stress Induced by Organic Peroxides, Is Not Endowed with Thiol-Dependent Peroxidase Activity
Cited by: 7
Author(s): Diogo de Abreu Meireles, Thiago Gerônimo Pires Alegria, Simone Alves, Carla Rani Rocha Arantes, Luís Eduardo Soares Netto
Software Mentions: 2
Published: about 11 years ago

10.1111/j.1365-2958.2007.05753.x

Gene encoding a deubiquitinating enzyme is mutated in artesunate‐ and chloroquine‐resistant rodent malaria parasites§
Cited by: 152
Author(s): Paul Hunt, Ana Afonso, Alison M. Creasey, Richard Culleton, Amar Bir Singh Sidhu, John G. Logan, Stephanie G. Valderramos, I.W. McNae, Sandra Cheesman, Virgı́lio do Rosário, Richard Carter, David A. Fidock, Pedro Vitor Lemos Cravo
Software Mentions: 2
Published: about 18 years ago

10.1186/s12866-017-1049-8

Trichoderma virens β-glucosidase I (BGLI) gene; expression in Saccharomyces cerevisiae including docking and molecular dynamics studies
Cited by: 10
Author(s): Gammadde Hewa Ishan Maduka Wickramasinghe, Samith Rathnayake, N.V. Chandrasekharan, Mahindagoda Siril Samantha Weerasinghe, Ravindra Lakshman Chundananda Wijesundera, W.S.S. Wijesundera
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0150719

REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence Reads
Cited by: 49
Author(s): Chong Chu, Rasmus Nielsen, Yufeng Wu
Software Mentions: 2
Published: over 9 years ago

10.1111/j.1365-2958.2007.05978.x

Identification of differentially expressed small non‐coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics
Cited by: 102
Author(s): Coral del Val, Elena Rivas, Omar Torres‐Quesada, Nicolás Toro, Josè I. Jiménez-Zurdo
Software Mentions: 2
Published: almost 18 years ago

10.1371/journal.pone.0175116

Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays
Cited by: 39
Author(s): Lívia Costa de Oliveira, Tessália Diniz Luerce Saraiva, Wanderson M. Silva, Ulisses de Pádua Pereira, Bruno C. Campos, Leandro de Jesus Benevides, Flávia Souza Rocha, Henrique César Pereira Figueiredo, Vasco Azevedo, Siomar C. Soares
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0111655

Unique Gene Expression Profile of the Proliferating Xenopus Tadpole Tail Blastema Cells Deciphered by RNA-Sequencing Analysis
Cited by: 18
Author(s): Hiroshi Tsujioka, Takekazu Kunieda, Yuki Katou, Katsuhiko Shirahige, Takeo Kubo
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0056093

Rapid Focused Sequencing: A Multiplexed Assay for Simultaneous Detection and Strain Typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis
Cited by: 12
Author(s): Rosemary S. Turingan, Hans-Ulrich Thomann, Anna Zolotova, Eugene Tan, Richard F. Selden
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0076095

Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia
Cited by: 20
Author(s): Jan Šlapeta, Marjorie C. Linares
Software Mentions: 2
Published: almost 12 years ago

10.1111/j.1462-2920.2010.02193.x

Ironing out the wrinkles in the rare biosphere through improved OTU clustering
Cited by: 1,150
Author(s): Susan M. Huse, David B. Mark Welch, Hilary G. Morrison, Mitchell L. Sogin
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0002103

The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria
Cited by: 128
Author(s): Sara H. Thomas, Ryan D. Wagner, Adrián K. Arakaki, Jeffrey Skolnick, John R. Kirby, Lawrence J. Shimkets, Robert A. Sanford, Frank E. Löffler
Software Mentions: 2
Published: about 17 years ago

10.1186/1471-2164-14-657

Targets of light signalling in Trichoderma reesei
Cited by: 67
Author(s): Doris Tisch, Monika Schmoll
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0142002

dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42
Cited by: 25
Author(s): Bin Fan, Lei Li, Yapeng Chao, Konrad U. Förstner, Jörg Vogel, Rainer Borriss, Xiao‐Qin Wu
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0194071

Candidate genes for first flower node identified in pepper using combined SLAF-seq and BSA
Cited by: 20
Author(s): Xiaofen Zhang, Guoyun Wang, Bin Chen, Heshan Du, Fenglan Zhang, Haiying Zhang, Qian Wang, Sansheng Geng
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0019328

Identification of Hyaloperonospora arabidopsidis Transcript Sequences Expressed during Infection Reveals Isolate-Specific Effectors
Cited by: 57
Author(s): Adriana Cabral, Joost H. M. Stassen, Michael Seidl, Jaqueline Bautor, Jane E. Parker, Guido Van den Ackerveken
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0026792

Novel Adiponectin Variants Identified in Type 2 Diabetic Patients Reveal Multimerization and Secretion Defects
Cited by: 13
Author(s): Prapaporn Jungtrakoon, Nattachet Plengvidhya, Watip Tangjittipokin, Sarin Chimnaronk, Wanisa Salaemae, Nalinee Chongjaroen, Kanjana Chanprasert, Jatuporn Sujjitjoon, Chatchawan Srisawat, Pa‐thai Yenchitsomanus
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0192452

Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3
Cited by: 29
Author(s): François P. Douillard, Diego Mora, Robyn T. Eijlander, Michiel Wels, Willem M. de Vos
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0057459

Metagenomic Detection of Viral Pathogens in Spanish Honeybees: Co-Infection by Aphid Lethal Paralysis, Israel Acute Paralysis and Lake Sinai Viruses
Cited by: 89
Author(s): Fredrik Granberg, Marina Vicente-Rubiano, Consuelo Rubio-Guerri, Oskar E. Karlsson, Deborah Kukielka, Sándor Bélak, José Manuel Sánchez-Vizcaíno
Software Mentions: 2
Published: over 12 years ago

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