pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/s13059-016-0915-2

CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries
Cited by: 64
Author(s): Florian Heigwer, Tianzuo Zhan, Marco Breinig, J. Winter, Dirk Brügemann, Svenja Leible, Michael Boutros
Software Mentions: 2
Published: over 10 years ago

10.1038/s41438-020-0333-1

High-density genetic map construction and identification of loci controlling flower-type traits in Chrysanthemum (Chrysanthemum × morifolium Ramat.)
Cited by: 25
Author(s): Xueqin Song, Yuhui Xu, Guolian Kang, Guangxun Fan, Fan Zhang, Chengyan Deng, Silan Dai, Hua He, Huaigen Xin, Yingying Li
Software Mentions: 2
Published: over 6 years ago

10.1186/gb-2007-8-1-r9

Cited by: 52
Author(s): John Wang, Stephanie Jemielity, Paolo Uva, Yannick Wurm, Johannes Gräff, Laurent Keller
Software Mentions: 2
Published: almost 20 years ago

10.1186/s12974-016-0602-y

Reduction of cytosolic phospholipase A2α upregulation delays the onset of symptoms in SOD1G93A mouse model of amyotrophic lateral sclerosis
Cited by: 22
Author(s): Yulia Solomonov, Nurit Hadad, Rachel Lévy
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.59157

Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos
Cited by: 7
Author(s): Joshua F Coulcher, Agnès Roure, Rafath Chowdhury, Méryl Robert, Laury Lescat, Aurélie Bouin, Juliana Carvajal Cadavid, Hiroki Nishida, Sébastien Darras
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0216159

Individual knock out of glycine receptor alpha subunits identifies a specific requirement of glra1 for motor function in zebrafish
Cited by: 11
Author(s): Éric Samarut, Domitille Chalopin, Raphaëlle Riché, Marc W. Allard, Meijiang Liao, Pierre Drapeau
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.01591

Study the Features of 57 Confirmed CRISPR Loci in 38 Strains of Staphylococcus aureus
Cited by: 34
Author(s): Xihong Zhao, Zhixue Yu, Zhenbo Xu
Software Mentions: 2
Published: over 8 years ago

10.1002/2211-5463.12212

Crystal structure of the essential biotin-dependent carboxylase AccA3 fromMycobacterium tuberculosis
Cited by: 2
Author(s): M.D. Bennett, Martin Högbom
Software Mentions: 2
Published: over 9 years ago

10.1038/srep21016

Comparative genomics of mitochondria in chlorarachniophyte algae: endosymbiotic gene transfer and organellar genome dynamics
Cited by: 21
Author(s): Goro Tanifuji, John M. Archibald, Takeji Hashimoto
Software Mentions: 2
Published: over 10 years ago

10.1038/srep23234

A MicroRNA-Mediated Insulin Signaling Pathway Regulates the Toxicity of Multi-Walled Carbon Nanotubes in Nematode Caenorhabditis elegans
Cited by: 44
Author(s): Yunli Zhao, Yang Jiao, Dayong Wang
Software Mentions: 2
Published: over 10 years ago

10.3390/plants10050991

Pan-Genome miRNomics in Brachypodium
Cited by: 2
Author(s): Tuğdem Muslu, Sezgi Biyiklioglu-Kaya, Bala Anı Akpınar, Meral Yüce, Hikmet Budak
Software Mentions: 2
Published: over 5 years ago

10.1038/srep25708

Transcriptomic responses of the calanoid copepod Calanus finmarchicus to the saxitoxin producing dinoflagellate Alexandrium fundyense
Cited by: 28
Author(s): Vittoria Roncalli, Matthew Cieslak, Petra H. Lenz
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0057281

Quantitative Genetic Analysis of Retinal Degeneration in the Blind Cavefish Astyanax mexicanus
Cited by: 78
Author(s): Kelly E. O’Quin, Masato Yoshizawa, Pooja Doshi, William R. Jeffery
Software Mentions: 2
Published: over 13 years ago

10.1038/srep26621

Metagenomic sequencing reveals the relationship between microbiota composition and quality of Chinese Rice Wine
Cited by: 104
Author(s): Xutao Hong, Jing Chen, Lin Liu, Huan Wu, Hai-Qin Tan, Guangfa Xie, Qian Xu, Huijun Zhang, Wenjing Yu, Lan Wang, Nan Qin
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms161025657

De Novo Sequencing and Analysis of the Safflower Transcriptome to Discover Putative Genes Associated with Safflor Yellow in Carthamus tinctorius L.
Cited by: 24
Author(s): Xiuming Liu, Yanjun Dong, Na Yao, Yu Zhang, Nan Wang, Xiyan Cui, Xiaowei Li, Yanfang Wang, Fawei Wang, Jing Yang, Lili Guan, Lina Du, Haiyan Li, Xiaokun Li
Software Mentions: 2
Published: about 11 years ago

10.3389/fgene.2021.620009

Comprehensive Pathogen Identification, Antibiotic Resistance, and Virulence Genes Prediction Directly From Simulated Blood Samples and Positive Blood Cultures by Nanopore Metagenomic Sequencing
Cited by: 9
Author(s): Mu Zhou, Yarong Wu, Timothy Kudinha, Peng Jia, Lei Wang, Yingchun Xu
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2018.00012

Identification and Expression Analysis of Wheat TaGF14 Genes
Cited by: 12
Author(s): Jun Guo, Shuang Dai, Haosheng Li, Aifeng Liu, Cheng Liu, Dungong Cheng, Xinyou Cao, Xiusheng Chu, Shengnan Zhai, Jianjun Li, Zhendong Zhao, Song Jiang
Software Mentions: 2
Published: almost 9 years ago

10.3389/fgene.2021.676751

Telomere Roles in Fungal Genome Evolution and Adaptation
Cited by: 11
Author(s): Mostafa Rahnama, Baohua Wang, Jane Dostart, О. С. Новікова, Daniel Yackzan, Andrew T. Yackzan, Haley Bruss, Maray Baker, Haven Jacob, Xiaofei Zhang, April Lamb, A. Keith Stewart, Melanie Heist, Joey Hoover, Patrick J. Calie, Li Chen, Jinze Liu, Mark L. Farman
Software Mentions: 2
Published: about 5 years ago

10.1038/srep32006

Genome-wide identification of cassava R2R3 MYB family genes related to abscission zone separation after environmental-stress-induced abscission
Cited by: 26
Author(s): Wenbin Liao, Yiling Yang, Yayun Li, Gan Wang, Ming Peng
Software Mentions: 2
Published: about 10 years ago

10.1111/1574-6941.12084

Microbial community potentially responsible for acid and metal release from an Ostrobothnian acid sulfate soil
Cited by: 30
Author(s): Xiaofen Wu, Zhen Lim Wong, Pekka Stén, Sten Engblom, Peter Österholm, Mark Dopson
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0087624

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers
Cited by: 330
Author(s): Kenan Hadziavdic, Katrine Lekang, Anders Lanzén, Inge Jonassen, Eric M. Thompson, Christofer Troedsson
Software Mentions: 2
Published: over 12 years ago

10.1038/srep17551

Transcriptomes reveal the genetic mechanisms underlying ionic regulatory adaptations to salt in the crab-eating frog
Cited by: 14
Author(s): Yong Shao, Lijun Wang, Li Zhong, Mingsheng Hong, Hong‐Man Chen, Robert W. Murphy, Dong‐Dong Wu, Yaping Zhang, Jing Che
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0036995

CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections
Cited by: 188
Author(s): Laëtitia Fabre, Jian Zhang, Ghislaine Guigon, Simon Le Hello, Véronique Guibert, Marie Accou-Demartin, Saïana de Romans, Catherine Lim, Chrystelle Roux, Virginie Passet, Laure Diancourt, M. Guibourdenche, Sylvie Issenhuth-Jeanjean, Mark Achtman, Sylvain Brisse, Christophe Sola, François‐Xavier Weill
Software Mentions: 2
Published: over 14 years ago

10.3389/fgene.2020.00557

Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasitica
Cited by: 5
Author(s): Franck Panabières, Corinne Rancurel, Martine Da Rocha, Marie-Line Kühn
Software Mentions: 2
Published: over 6 years ago

10.1038/srep39034

Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments
Cited by: 26
Author(s): Olga V. Golyshina, Ilya V. Kublanov, Hai Tran, Aleksei A. Korzhenkov, Heinrich Lünsdorf, Taras Y. Nechitaylo, С. Н. Гаврилов, Stepan V. Toshchakov, Peter N. Golyshin
Software Mentions: 2
Published: almost 10 years ago

10.3390/ijms18081734

Genome-Wide Organization and Expression Profiling of the SBP-Box Gene Family in Chinese Jujube (Ziziphus jujuba Mill.)
Cited by: 25
Author(s): Shuang Song, Heng Zhou, Songbai Sheng, Mengshu Cao, Yingyue Li, Xiaoming Pang
Software Mentions: 2
Published: about 9 years ago

10.3389/fgene.2020.590475

Identification and Expression Analysis of Long Non-coding RNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans Infection
Cited by: 12
Author(s): Xinyi Zhang, Tao Zhou, Baohua Chen, Haili Bai, Yulin Bai, Ji Zhao, Fei Pu, Yidi Wu, Chen Lin, You Shi, Qiaozhen Ke, Weiqiang Zheng, Jia Chen, Peng Xu
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep14446

Transcriptome and gene expression analysis of DHA producer Aurantiochytrium under low temperature conditions
Cited by: 52
Author(s): Zhenhua Ma, Yuxiang Tan, Guizhong Cui, Yingang Feng, Qiu Cui, Xiaojin Song
Software Mentions: 2
Published: about 11 years ago

10.1038/s41438-020-0265-9

Intra- and interspecific diversity analyses in the genus Eremurus in Iran using genotyping-by-sequencing reveal geographic population structure
Cited by: 8
Author(s): Hanieh Hadizadeh, Bochra Amina Bahri, Peng Qi, H. Dayton Wilde, Katrien M. Devos
Software Mentions: 2
Published: over 6 years ago

10.1038/s41396-020-00860-3

CRISPR-Cas systems restrict horizontal gene transfer in Pseudomonas aeruginosa
Cited by: 46
Author(s): Rachel M. Wheatley, R. Craig MacLean
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.01982

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils
Cited by: 21
Author(s): Ngoc‐Loi Nguyen, Woon-Jong Yu, Joo-Han Gwak, So-Jeong Kim, Soo-Je Park, Craig W. Herbold, Jong-Geol Kim, Man‐Young Jung, Sung‐Keun Rhee
Software Mentions: 2
Published: about 8 years ago

10.1038/s41396-018-0326-3

Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation
Cited by: 83
Author(s): Greta Reintjes, Carol Arnosti, Bernhard M. Fuchs, Rudolf Amann
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pgen.1004785

Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization
Cited by: 156
Author(s): Danelle Seymour, Daniel Koenig, Joerg Hagmann, Claude Becker, Detlef Weigel
Software Mentions: 2
Published: almost 12 years ago

10.3389/fimmu.2018.00013

Differing House Finch Cytokine Expression Responses to Original and Evolved Isolates of Mycoplasma gallisepticum
Cited by: 20
Author(s): Michal Vinkler, Ariel E Leon, Laila T. Kirkpatrick, Rami A. Dalloul, Dana M. Hawley
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41437-019-0260-9

Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar’s hibernating dwarf lemurs
Cited by: 14
Author(s): Rachel C. Williams, Marina B. Blanco, Jelmer W. Poelstra, Kelsie E Hunnicutt, Aaron A. Comeault, Anne D. Yoder
Software Mentions: 2
Published: about 7 years ago

10.3390/plants9121665

Genome Survey Sequencing of In Vivo Mother Plant and In Vitro Plantlets of Mikania cordata
Cited by: 1
Author(s): Yongfeng Hong, Xia Huang, Chunmei Li, Xiaoxian Ruan, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.01098

Marine Group II Dominates Planktonic Archaea in Water Column of the Northeastern South China Sea
Cited by: 28
Author(s): Haodong Liu, Chuanlun L. Zhang, Chunyan Yang, Songze Chen, Zhiwei Cao, Zhiwei Zhang, Jie Tian
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2021.646159

Development of Stable Chimeric IL-15 for Trans-Presentation by the Antigen Presenting Cells
Cited by: 3
Author(s): Manoj Patidar, Naveen Yadav, Sarat K. Dalai
Software Mentions: 2
Published: over 5 years ago

10.3390/jof7050399

What Role Might Non-Mating Receptors Play in Schizophyllum commune?
Cited by: 9
Author(s): Sophia Wirth, Daniela Freihorst, Katrin Krause, Erika Kothe
Software Mentions: 2
Published: over 5 years ago

10.1093/gbe/evz266

Evolutionary History of the Toll-Like Receptor Gene Family across Vertebrates
Cited by: 64
Author(s): Guangshuai Liu, Huanxin Zhang, Chao Zhao, Honghai Zhang
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pgen.1002187

Adaptations to Endosymbiosis in a Cnidarian-Dinoflagellate Association: Differential Gene Expression and Specific Gene Duplications
Cited by: 92
Author(s): Philippe Ganot, Aurélie Moya, Virginie Magnone, Denis Allemand, Paola Furla, Cécile Sabourault
Software Mentions: 2
Published: over 15 years ago

10.1099/vir.0.027557-0

Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008
Cited by: 122
Author(s): Alessio Lorusso, Amy L. Vincent, Michelle Harland, David P. Alt, Darrell O. Bayles, Sabrina L. Swenson, Marie Gramer, Colin A. Russell, Derek J. Smith, Kelly M. Lager, Nicola S. Lewis
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0184741

On site DNA barcoding by nanopore sequencing
Cited by: 92
Author(s): Michele Menegon, Chiara Cantaloni, Ana Rodríguez-Prieto, Cesare Centomo, Ahmed Abdelfattah, Marzia Rossato, Massimo Bernardi, Luciano Xumerle, Simon P. Loader, Massimo Delledonne
Software Mentions: 2
Published: about 9 years ago

10.1099/vir.0.059238-0

Novel hepatitis E like virus found in Swedish moose
Cited by: 53
Author(s): Jay Lin, Helené Norder, Henrik Uhlhorn, Sándor Bélak, Frederik Widén
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0151863

DNA Methylation and Potential for Epigenetic Regulation in Pygospio elegans
Cited by: 9
Author(s): Jenni Kesäniemi, Liisa Heikkinen, K. Emily Knott
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2017.00957

Efficacy of Phage Therapy in Controlling Rabbit Colibacillosis and Changes in Cecal Microbiota
Cited by: 19
Author(s): Jian Zhao, Yan Liu, Chen Xiao, Shaojie He, Huochun Yao, Guolian Bao
Software Mentions: 2
Published: over 9 years ago

10.1186/s13059-020-01980-x

Diverse genetic mechanisms underlie worldwide convergent rice feralization
Cited by: 47
Author(s): Jie Qiu, Jia Lu, Dongya Wu, Xifang Weng, Lijuan Chen, Jian Sun, Meihong Chen, Limin Mao, Bowen Jiang, Chu-Yu Ye, Guilherme Menegol Turra, Longbiao Guo, Guoyou Ye, Qian Zhu, Toshiyuki Imaizumi, Beng Kah Song, Laura Scarabel, Aldo Merotto, Kenneth M. Olsen, Longjiang Fan
Software Mentions: 2
Published: over 6 years ago

10.1099/jgv.0.000771

Genome sequence variation in the constricta strain dramatically alters the protein interaction and localization map of Potato yellow dwarf virus
Cited by: 16
Author(s): Chanyong Jang, Renyuan Wang, Joseph R. Wells, F. A. Ponce de León, Mark L. Farman, John Hammond, Michael M. Goodin
Software Mentions: 2
Published: over 9 years ago

10.1111/eva.13239

Natural CO2 seeps reveal adaptive potential to ocean acidification in fish
Cited by: 8
Author(s): Natalia Petit-Marty, Ivan Nagelkerken, Sean D. Connell, Celia Schunter
Software Mentions: 2
Published: over 5 years ago

10.1099/jgv.0.001315

Discovery of two highly divergent negative-sense RNA viruses associated with the parasitic nematode, Capillaria hepatica, in wild Mus musculus from New York City
Cited by: 14
Author(s): Simon H. Williams, Xiaoyu Che, Alexandra Oleynik, Joel A. Garcia, Dorothy R. Muller, Tanja S. Zabka, Cadhla Firth, Robert M. Corrigan, Thomas Briese, Komal Jain, W. Ian Lipkin
Software Mentions: 2
Published: about 7 years ago

10.1038/sdata.2015.15

De novo transcriptome assembly databases for the central nervous system of the medicinal leech
Cited by: 22
Author(s): Dror Hibsh, Hadas Schori, Sol Efroni, Orit Shefi
Software Mentions: 2
Published: over 11 years ago

10.1099/jgv.0.001607

Identification of protein interactions of grapevine fanleaf virus RNA-dependent RNA polymerase during infection of Nicotiana benthamiana by affinity purification and tandem mass spectrometry
Cited by: 2
Author(s): Larissa J. Osterbaan, Victoria Hoyle, Michelle Curtis, Stacy L. DeBlasio, Keith Rivera, Michelle Heck, Marc Fuchs
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2016.00797

Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile “Ferrovum”
Cited by: 36
Author(s): Sophie R. Ullrich, Carolina González, Anja Poehlein, Judith S. Tischler, Rolf Daniel, Michael Schlömann, David S. Holmes, Martin Mühling
Software Mentions: 2
Published: over 10 years ago

10.1186/s12859-018-2452-3

PCRdrive: the largest qPCR assay archive to date and endless potential for lab workflow revitalization
Cited by: 0
Author(s): Florian Bürger, Michele Angioni, Gianluca Russo, Martina Schad, Jim Kallarackal
Software Mentions: 2
Published: almost 8 years ago

10.1099/mgen.0.000508

Acquisition of pcnB [poly(A) polymerase I] genes via horizontal transfer from the β, γ-Proteobacteria
Cited by: 2
Author(s): George H. Jones
Software Mentions: 2
Published: almost 6 years ago

10.1099/mgen.0.000412

Comparative genome analysis of Erysipelothrix rhusiopathiae isolated from domestic pigs and wild boars suggests host adaptation and selective pressure from the use of antibiotics
Cited by: 4
Author(s): Robert Söderlund, Nicoletta Formenti, Stefania Calò, Mario Chiari, Mate Zoric, Giovanni Loris Alborali, Tina Sørensen Dalgaard, Eva Wattrang, Helena Eriksson
Software Mentions: 2
Published: over 6 years ago

10.1099/mgen.0.000597

Comparative genomic analysis of Escherichia coli isolates from cases of bovine clinical mastitis identifies nine specific pathotype marker genes
Cited by: 9
Author(s): Dongyun Jung, So-Youn Park, Janina Ruffini, Forest Dussault, Simon Dufour, Jennifer Ronholm
Software Mentions: 2
Published: over 5 years ago

10.1099/mgen.0.000196

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Cited by: 162
Author(s): Margaret M C Lam, Ryan R. Wick, Kelly L. Wyres, Claire L. Gorrie, Louise M. Judd, Adam Jenney, Sylvain Brisse, Kathryn E. Holt
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2164-11-384

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
Cited by: 167
Author(s): Sheng Guo, Yi Zheng, Je‐Gun Joung, Shiqiang Liu, Zhonghua Zhang, Oswald Crasta, Bruno W. S. Sobral, Yong Xu, Sanwen Huang, Zhangjun Fei
Software Mentions: 2
Published: over 16 years ago

10.1099/mgen.0.000507

Cas9-targeted nanopore sequencing reveals epigenetic heterogeneity after de novo assembly of native full-length hepatitis B virus genomes
Cited by: 7
Author(s): Chloe D. Goldsmith, Damien Cohen, A. Dubois, María del Carmen Jiménez Martínez, Kilian Petitjean, Anne Corlu, Barbara Testoni, Héctor Hernandez-Vargas, Isabelle Chemin
Software Mentions: 2
Published: over 5 years ago

10.1099/mgen.0.000497

Intraspecies plasmid and genomic variation of Mycobacterium kubicae revealed by the complete genome sequences of two clinical isolates
Cited by: 7
Author(s): Jo Hendrix, L. Elaine Epperson, David Durbin, Jennifer R. Honda, Michael Strong
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2164-15-1080

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications
Cited by: 31
Author(s): Stuart J. Lucas, Bala Anı Akpınar, Hana Šimková, Marie Kubaláková, Jaroslav Doležel, Hikmet Budak
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0206154

In silico identification of conserved miRNAs and their selective target gene prediction in indicine (Bos indicus) cattle
Cited by: 11
Author(s): Quratulain Hanif, Muhammad Farooq, Imran Amin, Shahid Mansoor, Yi Zhang, Qaiser M. Khan
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2105-13-334

Protein interface classification by evolutionary analysis
Cited by: 126
Author(s): José M. Duarte, Adam Srebniak, Martin A. Schärer, Guido Capitani
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0251305

Evaluation of the S-locus in Prunus domestica, characterization, phylogeny and 3D modelling
Cited by: 6
Author(s): Angel V. Fernández i Martí, Sarah Castro, Theodore M. DeJong, Richard S. Dodd
Software Mentions: 2
Published: over 5 years ago

10.1080/23802359.2021.1911712

Diversity and authentication of Rubus accessions revealed by complete plastid genome and rDNA sequences
Cited by: 4
Author(s): Young Sang Park, Jee Young Park, Jae-Mo Kang, Wan Hee Lee, Tae-Jin Yang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0144518

Transcriptomic Analysis and the Expression of Disease-Resistant Genes in Oryza meyeriana under Native Condition
Cited by: 9
Author(s): Bin He, Tao Xiang, Yinghong Gu, Changhe Wei, Xiaoyu Cheng, Shuqi Xiao, Zhihui Cheng, Yizheng Zhang
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12864-014-1205-6

Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes
Cited by: 39
Author(s): Jan M. Meyer, Christian Rödelsperger, Karsten Eichholz, Urban Tillmann, Allan Cembella, Angela McGaughran, Uwe John
Software Mentions: 2
Published: almost 12 years ago

10.1099/mgen.0.000598

A global transcriptomic analysis of Staphylococcus aureus biofilm formation across diverse clonal lineages
Cited by: 16
Author(s): Brooke R Tomlinson, Morgan E Malof, Lindsey N. Shaw
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0101673

Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus
Cited by: 159
Author(s): Harsh Raman, Rosy Raman, Andrzej Kilian, Frank Detering, Jason Carling, Neil Coombes, Simon Diffey, Gururaj Kadkol, David Edwards, M. E. McCully, Pradeep Ruperao, Isobel A. P. Parkin, Jacqueline Batley, David J. Luckett, Neil Wratten
Software Mentions: 2
Published: over 12 years ago

10.1099/mgen.0.000166

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
Cited by: 162
Author(s): Mickael Silva, Miguel P. Machado, Diogo N. Silva, Mirko Rossi, Jacob Moran-Gilad, Susana Santos, Mário Ramirez, João André Carriço
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-15-685

Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing
Cited by: 18
Author(s): Yu Liu, Mehmet Koyutürk, Sean Maxwell, Min Xiang, Marty L Veigl, Richard S. Cooper, Bamidele O. Tayo, Li Li, Thomas LaFramboise, Benlian Wang, Xiaofeng Zhu, Mark R. Chance
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2164-12-108

Characterization of statistical features for plant microRNA prediction
Cited by: 61
Author(s): Vivek Thakur, Samart Wanchana, Mercedes Xu, Richard Bruskiewich, W. Paul Quick, Axel Mosig, Xin‐Guang Zhu
Software Mentions: 2
Published: over 15 years ago

10.1038/s41396-019-0554-1

Groundwater cable bacteria conserve energy by sulfur disproportionation
Cited by: 50
Author(s): Hubert Müller, Sviatlana Marozava, Alexander J. Probst, Rainer U. Meckenstock
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-12-164

Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
Cited by: 130
Author(s): Brian R. Johnson, Neil D. Tsutsui
Software Mentions: 2
Published: over 15 years ago

10.1186/s12864-020-07069-w

Genome-wide identification and expression patterns analysis of the RPD3/HDA1 gene family in cotton
Cited by: 9
Author(s): Jingjing Zhang, Aimin Wu, Hengling Wei, Pengbo Hao, Qi Zhang, Miaomiao Tian, Yongsheng Xu, Shuaishuai Cheng, Xiaokang Fu, Liang Ma, Hantao Wang, Shuang Yu
Software Mentions: 2
Published: about 6 years ago

10.1099/mgen.0.000036

Recombination-mediated remodelling of host–pathogen interactions during Staphylococcus aureus niche adaptation
Cited by: 31
Author(s): Laura E. Spoor, Emily J. Richardson, Amy C. Richards, Gillian J. Wilson, Chriselle Mendonca, Ravi Gupta, Paul R. McAdam, Stephen W. Tuffs, Nikki S. Black, James P. O’Gara, Chia Y. Lee, Jukka Corander, J. Ross Fitzgerald
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2164-13-645

Limitations and possibilities of low cell number ChIP-seq
Cited by: 81
Author(s): Gregor D. Gilfillan, Timothy R. Hughes, Ying Sheng, Hanne Sagsveen Hjorthaug, Tobias Straub, Kristina Gervin, Jennifer R. Harris, Dag E. Undlien, Robert Lyle
Software Mentions: 2
Published: almost 15 years ago

10.1186/1750-1172-8-3

Haploinsufficiency of two histone modifier genes on 6p22.3, ATXN1 and JARID2, is associated with intellectual disability
Cited by: 18
Author(s): Tuva Barøy, Doriana Misceo, Petter Strømme, Asbjørg Stray-Pedersen, Asbjørn Holmgren, Olaug K. Rødningen, Anne Blomhoff, Johan Robert Helle, Alice Stormyr, Bjørn Tvedt, Madeleine Fannemel, Eirik Frengen
Software Mentions: 2
Published: almost 14 years ago

10.1186/1471-2164-8-409

Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula
Cited by: 27
Author(s): Dariusz Grzebelus, Sławomir Lasota, Tomasz Gambin, Grégory Kucherov, Anna Gambin
Software Mentions: 2
Published: almost 20 years ago

10.1128/mSphere.00585-18

Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses
Cited by: 51
Author(s): Claude Kwe Yinda, Emiel Vanhulle, Nádia Conceição-Neto, Leen Beller, Ward Deboutte, Chengying Shi, Stephen Mbigha Ghogomu, Piet Maes, Marc Van Ranst, Jelle Matthijnssens
Software Mentions: 2
Published: over 7 years ago

10.1264/jsme2.ME13104

Time-Resolved DNA Stable Isotope Probing Links Desulfobacterales- and Coriobacteriaceae-Related Bacteria to Anaerobic Degradation of Benzene under Methanogenic Conditions
Cited by: 39
Author(s): Midori Noguchi, Futoshi Kurisu, Ikuro Kasuga, Hiroaki Furumai
Software Mentions: 2
Published: almost 13 years ago

10.3390/antiox10030378

Nitrosative Redox Homeostasis and Antioxidant Response Defense in Disused Vastus lateralis Muscle in Long-Term Bedrest (Toulouse Cocktail Study)
Cited by: 7
Author(s): Dieter Blottner, Daniele Capitanio, Gabor Trautmann, Sandra Furlan, Guido Gambara, Manuela Moriggi, Katharina Block, Pietro Barbacini, Enrica Torretta, Guillaume Py, Angèle Chopard, Imre Vida, Pompeo Volpe, Cecilia Gelfi, Michele Salanova
Software Mentions: 2
Published: over 5 years ago

10.3390/toxins12010041

Aberrant Expressional Profiling of Known MicroRNAs in the Liver of Silver Carp (Hypophthalmichthys molitrix) Following Microcystin-LR Exposure Based on samllRNA Sequencing
Cited by: 6
Author(s): Yiyi Feng, Xi Chen, Jing Ma, Bangjun Zhang, Xiaoyü Li
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12967-021-02882-7

The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing
Cited by: 29
Author(s): Wenli Zhou, Zhang De, Zhengpeng Li, Huiqing Jiang, Jingnan Li, Rongrong Ren, Xuefeng Gao, Jianfeng Li, Xin Wang, Weifeng Wang, Yunsheng Yang
Software Mentions: 2
Published: over 5 years ago

10.4056/sigs.641096

Meeting Report: Metagenomics, Metadata and Meta-analysis; (M3) Special Interest Group at ISMB 2009
Cited by: 4
Author(s): Dawn Field, Iddo Friedberg, Peter J. Sterk, Renzo Kottmann, Frank Oliver Glöckner, Lynette Hirschman, George M Garrity, Guy Cochrane, John Wooley, Jack A. Gilbert
Software Mentions: 2
Published: almost 17 years ago

10.1038/s41598-021-91765-4

BING, a novel antimicrobial peptide isolated from Japanese medaka plasma, targets bacterial envelope stress response by suppressing cpxR expression
Cited by: 4
Author(s): Mingdong Dong, Shu Hin Kwok, Joseph L. Humble, Yimin Liang, Sze Wing Tang, Kin Hung Tang, Man Kit Tse, Josh Haipeng Lei, R. Rajkumar, Mohamad Koohi‐Moghadam, Doris Wai Ting Au, Hongyan Sun, Yun Wah Lam
Software Mentions: 2
Published: over 5 years ago

10.1111/1751-7915.12316

A novel bacteriophage cocktail reduces and dispersesPseudomonas aeruginosabiofilms under static and flow conditions
Cited by: 75
Author(s): Diana R. Alves, Patricia Pérez Esteban, Witold Kot, Jessica Bean, Tom Arnot, Lars Hestbjerg Hansen, Mark C. Enright, A. Toby A. Jenkins
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-021-91909-6

Independent duplications of the Golgi phosphoprotein 3 oncogene in birds
Cited by: 4
Author(s): Juan C. Opazo, Michael W. Vandewege, Javier Gutiérrez, Kattina Zavala, Luis Vargas‐Chacoff, Francisco J. Morera, Gonzalo A. Mardones
Software Mentions: 2
Published: over 5 years ago

10.1007/s13199-014-0291-1

The diversity of endophytic fungi in the above-ground tissue of two Lycopodium species in Poland
Cited by: 23
Author(s): Julia Pawłowska, Mateusz Wilk, Anna Śliwińska–Wyrzychowska, Monika Mętrak, Marta Wrzosek
Software Mentions: 2
Published: over 12 years ago

10.1111/1751-7915.12116

Activation and identification of five clusters for secondary metabolites in <scp>S</scp>treptomyces albus <scp>J</scp>1074
Cited by: 175
Author(s): Carlos Olano, Ignacio García, Aránzazu González, Martín González Rodríguez, Daniel Rozas, Jerónimo Rubio, Marina Sánchez‐Hidalgo, Alfredo F. Braña, Cármen Méndez, José A. Salas
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-020-73140-x

Genome wide in-silico miRNA and target network prediction from stress responsive Horsegram (Macrotyloma uniflorum) accessions
Cited by: 10
Author(s): Jeshima Khan Yasin, Bharat Mishra, M. Arumugam Pillai, Nidhi Verma, Shabir Hussain Wani, Hosam O. Elansary, Diaa O. El-Ansary, Priyanka Pandey, Viswanathan Chinnusamy
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-77110-1

Strategies to produce T-DNA free CRISPRed fruit trees via Agrobacterium tumefaciens stable gene transfer
Cited by: 35
Author(s): Lorenza Dalla Costa, Stefano Piazza, Valerio Pompili, Umberto Salvagnin, Alessandro Cestaro, Loredana Moffa, Lorenzo Vittani, C. Moser, Mickaël Malnoy
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-68696-7

Mutational analysis on predicting the impact of high-risk SNPs in human secretary phospholipase A2 receptor (PLA2R1)
Cited by: 6
Author(s): Zoya Khalid, Omar A. Almaghrabi
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-74122-9

The influences of low protein diet on the intestinal microbiota of mice
Cited by: 18
Author(s): Hiroaki Masuoka, Wataru Suda, Eriko Tomitsuka, Chie Shindo, Lena Takayasu, Paul F. Horwood, Andrew R. Greenhill, Masahira Hattori, Masahiro Umezaki, Kazuhiro Hirayama
Software Mentions: 2
Published: about 6 years ago

10.3390/microorganisms7090322

Organs, Cultivars, Soil, and Fruit Properties Affect Structure of Endophytic Mycobiota of Pinggu Peach Trees
Cited by: 17
Author(s): Fei Ren, Wei Dong, Dong Yan
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-020-58163-8

Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes
Cited by: 46
Author(s): Chandni Talwar, Shekhar Nagar, Roshan Kumar, Joy Scaria, Rup Lal, Ram Krishan Negi
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-51190-0

Transcriptome-Wide Identification and Characterization of Circular RNAs in Leaves of Chinese Cabbage (Brassica rapa L. ssp. pekinensis) in Response to Calcium Deficiency-Induced Tip-burn
Cited by: 24
Author(s): Wuhong Wang, Jinglei Wang, Qingzhen Wei, Biyuan Li, Xinmin Zhong, Tianhua Hu, Hongbo Hu, Chonglai Bao
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-020-61208-7

Evolutionary and Molecular Characterization of liver-enriched gene 1
Cited by: 3
Author(s): Yanna Dang, Jinyang Wang, Chen Liu, Kun Zhang, Jinrong Peng, Jin He
Software Mentions: 2
Published: over 6 years ago

10.1186/s12862-016-0602-7

Evolutionary patterns of Toll-like receptor signaling pathway genes in the Suidae
Cited by: 5
Author(s): Kwame A. Darfour‐Oduro, Hendrik‐Jan Megens, Alfred L. Roca, Martien A. M. Groenen, Lawrence B. Schook
Software Mentions: 2
Published: over 10 years ago

Projects: pypi: blast

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Papers Mentioning blast 1,819