Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: blast
https://packages.ecosyste.ms/registries/pypi.org/packages/blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
3 versions
Latest release: over 12 years ago
120 downloads last month
Papers Mentioning blast 1,819
10.1099/mgen.0.000036
Recombination-mediated remodelling of host–pathogen interactions during Staphylococcus aureus niche adaptationCited by: 31
Author(s): Laura E. Spoor, Emily J. Richardson, Amy C. Richards, Gillian J. Wilson, Chriselle Mendonca, Ravi Gupta, Paul R. McAdam, Stephen W. Tuffs, Nikki S. Black, James P. O’Gara, Chia Y. Lee, Jukka Corander, J. Ross Fitzgerald
Software Mentions: 2
Published: about 9 years ago
10.1186/1471-2164-13-645
Limitations and possibilities of low cell number ChIP-seqCited by: 81
Author(s): Gregor D. Gilfillan, Timothy R. Hughes, Ying Sheng, Hanne Sagsveen Hjorthaug, Tobias Straub, Kristina Gervin, Jennifer R. Harris, Dag E. Undlien, Robert Lyle
Software Mentions: 2
Published: almost 13 years ago
10.3389/fmicb.2020.601839
Identification of New Helicobacter pylori Subpopulations in Native Americans and Mestizos From PeruCited by: 6
Author(s): Andrés Julián Gutiérrez-Escobar, Billie Velapatiño, Víctor Borda, Charles S. Rabkin, Eduardo Tarazona‐Santos, Lilia Cabrera, Jaime Cok, Catherine C. Hooper, M Helena Jahuira Arias, Phabiola Herrera, Mehwish Noureen, Difei Wang, Judith Romero–Gallo, Bao Tran, Richard M. Peek, Douglas E. Berg, Robert H. Gilman, M. Constanza Camargo
Software Mentions: 2
Published: almost 4 years ago
10.1186/1471-2164-8-409
Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatulaCited by: 27
Author(s): Dariusz Grzebelus, Sławomir Lasota, Tomasz Gambin, Grégory Kucherov, Anna Gambin
Software Mentions: 2
Published: almost 18 years ago
10.3389/fmicb.2018.01982
Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest SoilsCited by: 21
Author(s): Ngoc‐Loi Nguyen, Woon-Jong Yu, Joo-Han Gwak, So-Jeong Kim, Soo-Je Park, Craig W. Herbold, Jong-Geol Kim, Man‐Young Jung, Sung‐Keun Rhee
Software Mentions: 2
Published: about 6 years ago
10.3389/fmicb.2017.01098
Marine Group II Dominates Planktonic Archaea in Water Column of the Northeastern South China SeaCited by: 28
Author(s): Haodong Liu, Chuanlun L. Zhang, Chunyan Yang, Songze Chen, Zhiwei Cao, Zhiwei Zhang, Jie Tian
Software Mentions: 2
Published: over 7 years ago
10.1264/jsme2.ME13104
Time-Resolved DNA Stable Isotope Probing Links <i>Desulfobacterales</i>- and <i>Coriobacteriaceae</i>-Related Bacteria to Anaerobic Degradation of Benzene under Methanogenic ConditionsCited by: 39
Author(s): Midori Noguchi, Futoshi Kurisu, Ikuro Kasuga, Hiroaki Furumai
Software Mentions: 2
Published: almost 11 years ago
10.3389/fmicb.2018.01591
Study the Features of 57 Confirmed CRISPR Loci in 38 Strains of Staphylococcus aureusCited by: 34
Author(s): Xihong Zhao, Zhixue Yu, Zhenbo Xu
Software Mentions: 2
Published: over 6 years ago
10.3390/antiox10030378
Nitrosative Redox Homeostasis and Antioxidant Response Defense in Disused Vastus lateralis Muscle in Long-Term Bedrest (Toulouse Cocktail Study)Cited by: 7
Author(s): Dieter Blottner, Daniele Capitanio, Gabor Trautmann, Sandra Furlan, Guido Gambara, Manuela Moriggi, Katharina Block, Pietro Barbacini, Enrica Torretta, Guillaume Py, Angèle Chopard, Imre Vida, Pompeo Volpe, Cecilia Gelfi, Michele Salanova
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2020.597686
Wenzhouxiangella Strain AB-CW3, a Proteolytic Bacterium From Hypersaline Soda Lakes That Preys on Cells of Gram-Positive BacteriaCited by: 12
Author(s): Dimitry Y. Sorokin, Damon Mosier, Jackie Zorz, Xiaoli Dong, Marc Strous
Software Mentions: 2
Published: about 4 years ago
10.3389/fmicb.2017.00202
Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4Cited by: 69
Author(s): Patrick Rast, Ines Glöckner, Christian Boedeker, Olga Jeske, Sandra Wiegand, Richard Reinhardt, Peter Schümann, Manfred Rohde, Stefan Spring, Frank Oliver Glöckner, Christian Jogler, Mareike Jogler
Software Mentions: 2
Published: almost 8 years ago
10.1111/1751-7915.12145
Colonization by endophytic <scp><i>O</i></scp><i>chrobactrum anthropi</i> <scp>M</scp>n1 promotes growth of <scp>J</scp>erusalem artichokeCited by: 22
Author(s): Xianmin Meng, Dekai Yan, Xiaohua Long, Changhai Wang, Zhaopu Liu, Zed Rengel
Software Mentions: 2
Published: over 10 years ago
10.3389/fmicb.2015.00597
Anaerobic digestion of the microalga Spirulina at extreme alkaline conditions: biogas production, metagenome, and metatranscriptomeCited by: 53
Author(s): Vímac Nolla-Ardèvol, Marc Strous, Halina E. Tegetmeyer
Software Mentions: 2
Published: over 9 years ago
10.1111/1751-7915.13365
The symbiotic bacteria <i>Alcaligenes faecalis</i> of the entomopathogenic nematodes <i>Oscheius</i> spp. exhibit potential biocontrol of plant‐ and entomopathogenic fungiCited by: 25
Author(s): Shaojie Shan, Wenwu Wang, Song Cui, Minggang Wang, Bingjiao Sun, Yang Li, Yaqi Fu, Xinghui Gu, Weibin Ruan, Sergio Rasmann
Software Mentions: 2
Published: almost 6 years ago
10.1111/1751-7915.12316
A novel bacteriophage cocktail reduces and disperses<i>P</i><i>seudomonas aeruginosa</i>biofilms under static and flow conditionsCited by: 75
Author(s): Diana R. Alves, Patricia Pérez Esteban, Witold Kot, Jessica Bean, Tom Arnot, Lars Hestbjerg Hansen, Mark C. Enright, A. Toby A. Jenkins
Software Mentions: 2
Published: about 9 years ago
10.1111/1751-7915.13545
Molecular profiling of beer wort fermentation diversity across natural <i>Saccharomyces eubayanus</i> isolatesCited by: 19
Author(s): Wladimir Mardones, Carlos A. Villarroel, Kristoffer Krogerus, Sebastián M. Tapia, Kamila Urbina, Christian I. Oporto, Samuel O’Donnell, Romain Minebois, Roberto F. Nespolo, Gilles Fischer, Amparo Querol, Brian Gibson, Francisco A. Cubillos
Software Mentions: 2
Published: over 4 years ago
10.1111/1751-7915.12116
Activation and identification of five clusters for secondary metabolites in <scp><i>S</i></scp><i>treptomyces albus</i> <scp>J</scp>1074Cited by: 175
Author(s): Carlos Olano, Ignacio García, Aránzazu González, Martín González Rodríguez, Daniel Rozas, Jerónimo Rubio, Marina Sánchez‐Hidalgo, Alfredo F. Braña, Cármen Méndez, José A. Salas
Software Mentions: 2
Published: over 10 years ago
10.3389/fmicb.2018.01925
Characterization of ML-005, a Novel Metaproteomics-Derived EsteraseCited by: 6
Author(s): Premankur Sukul, Natalie Lupilov, Lars I. Leichert
Software Mentions: 2
Published: over 6 years ago
10.3389/fmicb.2016.00875
DGV: Dengue Genographic ViewerCited by: 16
Author(s): Akifumi Yamashita, Tetsuya Sakamoto, Tsuyoshi Sekizuka, Kengo Kato, Tomohiko Takasaki, Makoto Kuroda
Software Mentions: 2
Published: over 8 years ago
10.3389/fpls.2021.714305
Insights Into the Molecular Evolution of AT-Hook Motif Nuclear Localization Genes in Brassica napusCited by: 7
Author(s): Weimeng Zhang, Dongdong Fang, Xiuzhu Cheng, Jun Cao, Xiao‐Li Tan
Software Mentions: 2
Published: about 3 years ago
10.3389/fgene.2020.00557
Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasiticaCited by: 5
Author(s): Franck Panabières, Corinne Rancurel, Martine Da Rocha, Marie-Line Kühn
Software Mentions: 2
Published: over 4 years ago
10.3389/fimmu.2018.00013
Differing House Finch Cytokine Expression Responses to Original and Evolved Isolates of Mycoplasma gallisepticumCited by: 20
Author(s): Michal Vinkler, Ariel E Leon, Laila T. Kirkpatrick, Rami A. Dalloul, Dana M. Hawley
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12862-016-0602-7
Evolutionary patterns of Toll-like receptor signaling pathway genes in the SuidaeCited by: 5
Author(s): Kwame A. Darfour‐Oduro, Hendrik‐Jan Megens, Alfred L. Roca, Martien A. M. Groenen, Lawrence B. Schook
Software Mentions: 2
Published: almost 9 years ago
10.3389/fgene.2018.00012
Identification and Expression Analysis of Wheat TaGF14 GenesCited by: 12
Author(s): Jun Guo, Shuang Dai, Haosheng Li, Aifeng Liu, Cheng Liu, Dungong Cheng, Xinyou Cao, Xiusheng Chu, Shengnan Zhai, Jianjun Li, Zhendong Zhao, Song Jiang
Software Mentions: 2
Published: almost 7 years ago
10.3389/fgene.2021.676751
Telomere Roles in Fungal Genome Evolution and AdaptationCited by: 11
Author(s): Mostafa Rahnama, Baohua Wang, Jane Dostart, О. С. Новікова, Daniel Yackzan, Andrew T. Yackzan, Haley Bruss, Maray Baker, Haven Jacob, Xiaofei Zhang, April Lamb, A. Keith Stewart, Melanie Heist, Joey Hoover, Patrick J. Calie, Li Chen, Jinze Liu, Mark L. Farman
Software Mentions: 2
Published: over 3 years ago
10.3389/fgene.2021.620009
Comprehensive Pathogen Identification, Antibiotic Resistance, and Virulence Genes Prediction Directly From Simulated Blood Samples and Positive Blood Cultures by Nanopore Metagenomic SequencingCited by: 9
Author(s): Mu Zhou, Yarong Wu, Timothy Kudinha, Peng Jia, Lei Wang, Yingchun Xu
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2021.646159
Development of Stable Chimeric IL-15 for Trans-Presentation by the Antigen Presenting CellsCited by: 3
Author(s): Manoj Patidar, Naveen Yadav, Sarat K. Dalai
Software Mentions: 2
Published: over 3 years ago
10.3390/md16020042
Proteomic Analyses of the Unexplored Sea Anemone Bunodactis verrucosaCited by: 17
Author(s): Dany Domínguez-Pérez, Alexandre Campos, Armando A. Rodríguez, Maria V. Turkina, Tiago Ribeiro, Hugo Osório, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 2
Published: almost 7 years ago
10.1186/1471-2105-10-S6-S15
Towards barcode markers in Fungi: an intron map of Ascomycota mitochondriaCited by: 36
Author(s): Mónica Santamaría, Saverio Vicario, Graziano Pappadà, Gaetano Scioscia, Claudio Scazzocchio, Cecilia Saccone
Software Mentions: 2
Published: over 15 years ago
10.3389/fgene.2020.590475
Identification and Expression Analysis of Long Non-coding RNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans InfectionCited by: 12
Author(s): Xinyi Zhang, Tao Zhou, Baohua Chen, Haili Bai, Yulin Bai, Ji Zhao, Fei Pu, Yidi Wu, Chen Lin, You Shi, Qiaozhen Ke, Weiqiang Zheng, Jia Chen, Peng Xu
Software Mentions: 2
Published: about 4 years ago
10.1186/s12864-020-07069-w
Genome-wide identification and expression patterns analysis of the RPD3/HDA1 gene family in cottonCited by: 9
Author(s): Jingjing Zhang, Aimin Wu, Hengling Wei, Pengbo Hao, Qi Zhang, Miaomiao Tian, Yongsheng Xu, Shuaishuai Cheng, Xiaokang Fu, Liang Ma, Hantao Wang, Shuang Yu
Software Mentions: 2
Published: about 4 years ago
10.3389/fcell.2021.657192
Loss of stra8 Increases Germ Cell Apoptosis but Is Still Compatible With Sperm Production in Atlantic Salmon (Salmo salar)Cited by: 5
Author(s): Kai Ove Skaftnesmo, Diego Crespo, Lene Kleppe, Eva Andersson, Rolf B. Edvardsen, Birgitta Norberg, Per Gunnar Fjelldal, Tom Hansen, Rüdiger Schulz, Anna Wargelius
Software Mentions: 2
Published: over 3 years ago
10.3389/fcell.2020.00649
Identification of a TLR-Induced Four-lncRNA Signature as a Novel Prognostic Biomarker in Esophageal CarcinomaCited by: 14
Author(s): Jing Liu, Han Li, Yanjie Chu, Ruiling Xu, Dekai Zhang, Xinhong Wang
Software Mentions: 2
Published: over 4 years ago
10.1111/1574-6941.12084
Microbial community potentially responsible for acid and metal release from an Ostrobothnian acid sulfate soilCited by: 30
Author(s): Xiaofen Wu, Zhen Lim Wong, Pekka Stén, Sten Engblom, Peter Österholm, Mark Dopson
Software Mentions: 2
Published: over 11 years ago
10.1186/1471-2164-10-295
Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napusCited by: 20
Author(s): Christian Obermeier, Bashir Hosseini, W. Friedt, Rod J. Snowdon
Software Mentions: 2
Published: almost 16 years ago
10.1002/fsn3.2153
Spectroscopic and in silico investigation of the interaction between GH1 β‐glucosidase and ginsenoside Rb <sub>1</sub>Cited by: 8
Author(s): Shuning Zhong, Yan Mi, Haifeng Zou, Ping Zhao, Haiqing Ye, Tiehua Zhang, Can Zhao
Software Mentions: 2
Published: almost 4 years ago
10.1002/2211-5463.12022
Analysis of nucleotide diphosphate sugar dehydrogenases reveals family and group‐specific relationshipsCited by: 4
Author(s): Nicholas Freas, Peter W. Newton, John Perozich
Software Mentions: 2
Published: almost 9 years ago
10.1002/2211-5463.12212
Crystal structure of the essential biotin-dependent carboxylase AccA3 from<i>Mycobacterium tuberculosis</i>Cited by: 2
Author(s): M.D. Bennett, Martin Högbom
Software Mentions: 2
Published: over 7 years ago
10.1002/fsn3.2468
Gastrointestinal transit tolerance, cell surface hydrophobicity, and functional attributes of <i>Lactobacillus Acidophilus</i> strains isolated from Indigenous DahiCited by: 12
Author(s): Wajiha Farid, Tariq Masud, Aamir Sohail, Nazir Ahmad, Syed Muhammad Saqlan Naqvi, Sipper Khan, Amjad Ali, S. A. Khalifa, Abid Hussain, Sartaj Ali, Maryum Saghir, Azhari Siddeeg, Muhammad Faisal Manzoor
Software Mentions: 2
Published: over 3 years ago
10.1186/s12864-017-3570-4
Leaf transcriptome analysis of a subtropical evergreen broadleaf plant, wild oil-tea camellia (Camellia oleifera), revealing candidate genes for cold acclimationCited by: 41
Author(s): Jiaming Chen, Xiaoqiang Yang, Xiaomao Huang, Shi-Hua Duan, Chengnian Long, Jiakuan Chen, Jun Rong
Software Mentions: 2
Published: over 7 years ago
10.3390/life10050068
Identification of Differentially Expressed Gene Transcripts in Porcine Endometrium during Early Stages of PregnancyCited by: 5
Author(s): Mariusz Pierzchała, Dorota Pierzchała, Magdalena Ogłuszka, Ewa Poławska, Tadeusz Blicharski, Agnieszka Roszczyk, Agata Nawrocka, Paweł Urbański, Kamila Stepanow, Aleksandra Ciepłoch, A. Korwin‐Kossakowska, M.F.W. te Pas, Brygida Ślaska, Magdalena Buszewska-Forajta, J. M. Jaśkowski, Mateusz Sachajko, Magdalena Herudzińska, Bartosz M. Jaśkowski, Wojciech Niżański, Leyland Fraser, Urszula Czarnik, Haja N. Kadarmideen, Chandra Shekhar Pareek
Software Mentions: 2
Published: over 4 years ago
10.1002/2211-5463.12972
Recombinant transgelin‐like protein 1 fromMytilusshell induces formation of CaCO3polymorphic crystalsin vitroCited by: 1
Author(s): Yuting Jiang, Qi Sun, Meihua Fan, Jianyu He, Xiaolin Zhang, Hao Xu, Zhi Liao
Software Mentions: 2
Published: about 4 years ago
10.3390/foods9091194
Determining the Authenticity of Shark Meat Products by DNA SequencingCited by: 23
Author(s): Patrizia Marchetti, Anna Mottola, Roberta Piredda, Giuseppina Ciccarese, Angela Di Pinto
Software Mentions: 2
Published: about 4 years ago
10.12688/f1000research.10040.1
YeATSAM analysis of the walnut and chickpea transcriptome reveals key genes undetected by current annotation toolsCited by: 8
Author(s): Sandeep Chakraborty, Pedro Manuel Martínez-García, Abhaya M. Dandekar
Software Mentions: 2
Published: about 8 years ago
10.1186/1471-2105-13-44
Grading amino acid properties increased accuracies of single point mutation on protein stability predictionCited by: 12
Author(s): Jianguo Liu, Xianjiang Kang
Software Mentions: 2
Published: over 12 years ago
10.1111/eva.13239
Natural CO<sub>2</sub> seeps reveal adaptive potential to ocean acidification in fishCited by: 8
Author(s): Natalia Petit-Marty, Ivan Nagelkerken, Sean D. Connell, Celia Schunter
Software Mentions: 2
Published: over 3 years ago
10.1099/acmi.0.000028
Growth and metabolic characterization of four lactic acid bacteria species isolated from rice beer prepared in Assam, IndiaCited by: 6
Author(s): Amlan Das, Manas Das, Takaaki Miyaji, Sankar Chandra Deka
Software Mentions: 2
Published: over 5 years ago
10.1186/s13072-020-00340-0
A comprehensive overview of bull sperm-borne small non-coding RNAs and their diversity across breedsCited by: 29
Author(s): Eli Sellem, Sylvain Marthey, Andrea Rau, Luc Jouneau, A. Bonnet, Jean‐Philippe Perrier, Sébastien Fritz, Chrystelle Le Danvic, Mekki Boussaha, Hélène Kiefer, Hélène Jammes, Laurent Schibler
Software Mentions: 2
Published: over 4 years ago
10.3389/fnbeh.2020.00160
Blast-Related Mild TBI Alters Anxiety-Like Behavior and Transcriptional Signatures in the Rat AmygdalaCited by: 19
Author(s): Jennifer Blaze, Inbae Choi, Zhaoyu Wang, Michelle Umali, Natalia Mendelev, Anna E. Tschiffely, Stephen T. Ahlers, Gregory A. Elder, Yongchao Ge, Fatemeh Haghighi
Software Mentions: 2
Published: about 4 years ago
10.3389/fmicb.2016.00797
Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile “Ferrovum”Cited by: 36
Author(s): Sophie R. Ullrich, Carolina González, Anja Poehlein, Judith S. Tischler, Rolf Daniel, Michael Schlömann, David S. Holmes, Martin Mühling
Software Mentions: 2
Published: over 8 years ago
10.1080/22221751.2018.1563455
Detection of human parvovirus 4 DNA in the patients with acute encephalitis syndrome during seasonal outbreaks of the disease in Gorakhpur, IndiaCited by: 6
Author(s): Vidya A. Arankalle, Navin Srivastava, K. P. Kushwaha, Agnibha Sen, Ashwini Y. Ramdasi, Priyanka Patel, Sumeet Kuthe, Bangari Haldipur, Gajanan N. Sakpal, Kavita S. Lole, Nilesh Ingle
Software Mentions: 2
Published: almost 6 years ago
10.3390/biom9040144
Host-Microbiome Synergistic Control on Sphingolipid Metabolism by Mechanotransduction in Model ArthritisCited by: 5
Author(s): Xiaoyuan Zhou, Valentina Devescovi, Yuanhua Liu, Jennifer E. Dent, Christine Nardini
Software Mentions: 2
Published: over 5 years ago
10.1111/j.1462-2920.2010.02193.x
Ironing out the wrinkles in the rare biosphere through improved OTU clusteringCited by: 1,150
Author(s): Susan M. Huse, David B. Mark Welch, Hilary G. Morrison, Mitchell L. Sogin
Software Mentions: 2
Published: over 14 years ago
10.1111/j.1462-2920.2008.01667.x
The Cry48Aa-Cry49Aa binary toxin from<i>Bacillus sphaericus</i>exhibits highly restricted target specificityCited by: 37
Author(s): Gareth Wyn Jones, Margaret C. Wirth, R. G. Monnerat, Colin Berry
Software Mentions: 2
Published: over 16 years ago
10.1186/1471-2164-12-436
Analysis of high-identity segmental duplications in the grapevine genomeCited by: 31
Author(s): Giuliana Giannuzzi, Pietro D’Addabbo, Marica Gasparro, M. Martinelli, Francesco Nicola Carelli, Donato Antonacci, Mario Ventura
Software Mentions: 2
Published: about 13 years ago
10.1002/ece3.5708
Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze RiverCited by: 9
Author(s): Fangyuan Cheng, Qian Wang, Pierpaolo Maisano Delser, Chenhong Li
Software Mentions: 2
Published: about 5 years ago
10.1002/ece3.2028
Population genomics of local adaptation versus speciation in coral reef fishes ( <i>Hypoplectrus</i> spp, Serranidae)Cited by: 31
Author(s): Sophie Picq, W. Owen McMillan, Oscar Puebla
Software Mentions: 2
Published: over 8 years ago
10.1099/mgen.0.000196
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populationsCited by: 162
Author(s): Margaret M C Lam, Ryan R. Wick, Kelly L. Wyres, Claire L. Gorrie, Louise M. Judd, Adam Jenney, Sylvain Brisse, Kathryn E. Holt
Software Mentions: 2
Published: about 6 years ago
10.1080/22221751.2020.1773745
Genetic cluster analysis of SARS-CoV-2 and the identification of those responsible for the major outbreaks in various countriesCited by: 45
Author(s): Xuemei Yang, Ning Dong, Edward Wai Chi Chan, Sheng Chen
Software Mentions: 2
Published: almost 5 years ago
10.1111/1462-2920.13036
Closing the gaps on the viral photosystem‐ <scp>I</scp> <i> psa <scp>DCAB</scp> </i> gene organizationCited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: about 9 years ago
10.1186/s12862-017-1007-y
Segmental duplications: evolution and impact among the current Lepidoptera genomesCited by: 11
Author(s): Qian Zhao, Dongna Ma, Liette Vasseur, Minsheng You
Software Mentions: 2
Published: over 7 years ago
10.1155/2016/7823429
VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and CollinearityCited by: 19
Author(s): Yiqing Xu, Changwei Bi, Guoxin Wu, Suyun Wei, Xiaogang Dai, Tongming Yin, Ning Ye
Software Mentions: 2
Published: almost 9 years ago
10.3389/fpls.2021.712254
Identification and Characterization of Secondary Wall-Associated NAC Genes and Their Involvement in Hormonal Responses in Tobacco (Nicotiana tabacum)Cited by: 5
Author(s): Na Xu, Lin Meng, Lin Song, Xiaoxu Li, Shanshan Du, Fengqin Hu, Yuanda Lv, Wenjing Song
Software Mentions: 2
Published: about 3 years ago
10.1016/j.csbj.2017.01.002
Deep Assessment of Genomic Diversity in Cassava for Herbicide Tolerance and Starch BiosynthesisCited by: 14
Author(s): Jorge Duitama, Lina Kafuri, Daniel Tello, Ana Marı́a Leiva, Bernhard J. Hofinger, Sneha Datta, Zaida Lentini, Ericson Aranzales, Bradley J. Till, Hernán Ceballos
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12859-019-3232-4
Protein sequence information extraction and subcellular localization prediction with gapped k-Mer methodCited by: 8
Author(s): Yao Yao, Yaping Lv, Ling Li, Huimin Xu, Binbin Ji, Jing Chen, Chun Li, Bo Liao, Xuying Nan
Software Mentions: 2
Published: almost 5 years ago
10.1007/s00284-014-0629-1
The Diversity of Bacteria Isolated from Antarctic Freshwater Reservoirs Possessing the Ability to Produce PolyhydroxyalkanoatesCited by: 27
Author(s): Sławomir Ciesielski, Dorota Górniak, Justyna Możejko, Aleksander Świątecki, Jakub Grzesiak, Marek K. Zdanowski
Software Mentions: 2
Published: over 10 years ago
10.1099/mgen.0.000279
Domestication of Campylobacter jejuni NCTC 11168Cited by: 21
Author(s): Ben Pascoe, Lisa Williams, Jessica K. Calland, Guillaume Méric, Matthew D. Hitchings, Myles Dyer, Joseph Ryder, Sophie Shaw, Bruno Silvester Lopes, Cosmin Chintoan-Uta, Elaine Allan, Ana Maria Centola Vidal, Catherine Fearnley, Paul Everest, Justin A. Pachebat, Tristan A Cogan, Mark P. Stevens, T. J. Humphrey, Thomas S. Wilkinson, Alison J. Cody, Frances M. Colles, Keith A. Jolley, Martin C. J. Maiden, Norval James Colin Strachan, Bruce M. Pearson, Dennis Linton, Brendan W. Wren, Julian Parkhill, David J. Kelly, Arnoud H. M. van Vliet, Ken J. Forbes, Samuel K. Sheppard
Software Mentions: 2
Published: over 5 years ago
10.1186/s12864-019-5545-0
An insight into the sialotranscriptome and virome of Amazonian anophelinesCited by: 21
Author(s): Vera Margarete Scarpassa, Humberto Julio Debat, Ronildo Baiatone Alencar, José Ferreira Saraiva, Eric Calvo, Bruno Arcà, José M. C. Ribeiro
Software Mentions: 2
Published: over 5 years ago
10.1186/s12862-015-0423-0
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plantsCited by: 304
Author(s): Stephen A. Smith, Michael J. Moore, Joseph W. Brown, Ya Yang
Software Mentions: 2
Published: over 9 years ago
10.3390/biology8030060
The Dynamics of the Cell Wall Proteome of Developing Alfalfa StemsCited by: 10
Author(s): Kjell Sergeant, Bruno Printz, Gea Guerriero, Jenny Renaut, Stanley Lutts, Jean-François Hausman
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0076095
Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, AustraliaCited by: 20
Author(s): Jan Šlapeta, Marjorie C. Linares
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0103160
Characterization of Hepatitis C Virus Genotypes by Direct Sequencing of HCV 5′UTR Region of Isolates from Saudi ArabiaCited by: 13
Author(s): Medhat K. Shier, Mohammad S. El-Wetidy, Hebatallah H. Ali, Mohammad M. Al‐Qattan
Software Mentions: 2
Published: over 10 years ago
10.1186/1745-6150-1-12
Cited by: 10Author(s): Dimitris Papamichail, Nicholas Delihas
Software Mentions: 2
Published: almost 19 years ago
10.1186/1471-2164-13-221
Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grassesCited by: 46
Author(s): Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, Philippe Lecomte, Ingrid Mercier, Hélène Bergès, Caroline Pont, A. Blanco, Jérôme Salse
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0000169
Vertebrate Vitellogenin Gene Duplication in Relation to the “3R Hypothesis”: Correlation to the Pelagic Egg and the Oceanic Radiation of TeleostsCited by: 181
Author(s): Roderick Nigel Finn, Børge André Kristoffersen
Software Mentions: 2
Published: almost 18 years ago
10.1007/s13205-014-0238-5
Diversified diazotrophs associated with the rhizosphere of Western Indian Himalayan native red kidney beans (Phaseolus vulgaris L.)Cited by: 24
Author(s): Deep Chandra Suyal, Amit Yadav, Yogesh S. Shouche
Software Mentions: 2
Published: over 10 years ago
10.1186/s13062-016-0144-3
Compartmentalization in PVC super-phylum: evolution and impactCited by: 15
Author(s): Sandrine Pinos, Pierre Pontarotti, Didier Raoult, Jean-Pierre Baudoin, Isabelle Pagnier
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0056093
Rapid Focused Sequencing: A Multiplexed Assay for Simultaneous Detection and Strain Typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestisCited by: 12
Author(s): Rosemary S. Turingan, Hans-Ulrich Thomann, Anna Zolotova, Eugene Tan, Richard F. Selden
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0179027
Transcriptome profiling analysis reveals the role of silique in controlling seed oil content in Brassica napusCited by: 7
Author(s): Ke-Lin Huang, Zhang Mei-li, Guangjing Ma, Huan Wu, Xiaoming Wu, Feng Ren, Xuebao Li
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0208735
Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016Cited by: 8
Author(s): Vaishnavi Pattabiraman, Lee S. Katz, Jessica C. Chen, Andre McCullough, Eija Trees
Software Mentions: 2
Published: almost 6 years ago
10.1155/2019/3780245
Iterative Variable Gene Discovery from Whole Genome Sequencing with a Bootstrapped Multiresolution AlgorithmCited by: 1
Author(s): David N. Olivieri, Francisco Gambón-Deza
Software Mentions: 2
Published: almost 6 years ago
10.3389/fpls.2021.625520
De novo Transcriptome Assembly and Comparative Analysis Highlight the Primary Mechanism Regulating the Response to Selenium Stimuli in Oats (Avena sativa L.)Cited by: 2
Author(s): Tao Liu, Xiaoting Liu, Rangrang Zhou, Hong Chen, Huaigang Zhang, Bo Zhang
Software Mentions: 2
Published: over 3 years ago
10.1186/s12864-015-1737-4
Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stressCited by: 22
Author(s): Valeria Wallace-Salinas, Daniel P. Brink, Dag Ahrén, Marie-Françoise Gorwa-Grauslund
Software Mentions: 2
Published: over 9 years ago
10.1186/1471-2164-12-283
Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencingCited by: 64
Author(s): Anna W. Santure, Jacob Gratten, Jim A. Mossman, Ben C. Sheldon, Jon Slate
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0175116
Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assaysCited by: 39
Author(s): Lívia Costa de Oliveira, Tessália Diniz Luerce Saraiva, Wanderson M. Silva, Ulisses de Pádua Pereira, Bruno C. Campos, Leandro de Jesus Benevides, Flávia Souza Rocha, Henrique César Pereira Figueiredo, Vasco Azevedo, Siomar C. Soares
Software Mentions: 2
Published: over 7 years ago
10.1186/1472-6807-7-10
Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1Cited by: 70
Author(s): D.J. Ferraro, Eric N. Brown, Chung Huang Yu, Rebecca E. Parales, David T. Gibson, S. Ramaswamy
Software Mentions: 2
Published: over 17 years ago
10.1186/s12864-016-3266-1
Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffiiCited by: 31
Author(s): Yan Zhu, Longxian Chen, Chengjun Zhang, Pei Hao, Xinyun Jing, Xuan Li
Software Mentions: 2
Published: almost 8 years ago
10.1186/s13104-015-1683-x
Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebratesCited by: 1
Author(s): Mbaye Tine
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0026792
Novel Adiponectin Variants Identified in Type 2 Diabetic Patients Reveal Multimerization and Secretion DefectsCited by: 13
Author(s): Prapaporn Jungtrakoon, Nattachet Plengvidhya, Watip Tangjittipokin, Sarin Chimnaronk, Wanisa Salaemae, Nalinee Chongjaroen, Kanjana Chanprasert, Jatuporn Sujjitjoon, Chatchawan Srisawat, Pa‐thai Yenchitsomanus
Software Mentions: 2
Published: about 13 years ago
10.1371/journal.pone.0190938
Extension of the viral ecology in humans using viral profile hidden Markov modelsCited by: 22
Author(s): Zurab Bzhalava, Emilie Hultin, Joakim Dillner
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0150719
REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence ReadsCited by: 49
Author(s): Chong Chu, Rasmus Nielsen, Yufeng Wu
Software Mentions: 2
Published: over 8 years ago
10.1186/1471-2164-13-621
Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania majorCited by: 37
Author(s): Vijayendran Gowri, Indira Ghosh, Amit Sharma, Rentala Madhubala
Software Mentions: 2
Published: about 12 years ago
10.1186/1753-6561-3-S4-S14
Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigsCited by: 11
Author(s): Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornshøj, Magali SanCristobal, Pierre Mormède, Dirk-Jan de Koning
Software Mentions: 2
Published: over 15 years ago
10.1371/journal.pone.0002103
The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-ProteobacteriaCited by: 128
Author(s): Sara H. Thomas, Ryan D. Wagner, Adrián K. Arakaki, Jeffrey Skolnick, John R. Kirby, Lawrence J. Shimkets, Robert A. Sanford, Frank E. Löffler
Software Mentions: 2
Published: over 16 years ago
10.1186/s12870-019-1785-z
Development and characterisation of interspecific hybrid lines with genome-wide introgressions from Triticum timopheevii in a hexaploid wheat backgroundCited by: 21
Author(s): Uma Devi, Surbhi Grewal, Caiyun Yang, Stella Hubbart‐Edwards, Duncan Scholefield, Stephen Ashling, Amanda Burridge, Ian P. King, Julie King
Software Mentions: 2
Published: over 5 years ago
10.1186/s12870-020-2239-3
Genome-wide identification and analysis of B-BOX gene family in grapevine reveal its potential functions in berry developmentCited by: 40
Author(s): Hongru Wei, Peipei Wang, Jianqing Chen, Changjun Li, Yongzhang Wang, Yuan Yang, Jinggui Fang, Xiangpeng Leng
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0155851
Integrated Metabolo-Transcriptomics Reveals Fusarium Head Blight Candidate Resistance Genes in Wheat QTL-Fhb2Cited by: 80
Author(s): Dhananjay Dhokane, Shailesh Karre, Ajjamada C. Kushalappa, Curt A. McCartney
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0142002
dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42Cited by: 25
Author(s): Bin Fan, Lei Li, Yapeng Chao, Konrad U. Förstner, Jörg Vogel, Rainer Borriss, Xiao‐Qin Wu
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0111655
Unique Gene Expression Profile of the Proliferating Xenopus Tadpole Tail Blastema Cells Deciphered by RNA-Sequencing AnalysisCited by: 18
Author(s): Hiroshi Tsujioka, Takekazu Kunieda, Yuki Katou, Katsuhiko Shirahige, Takeo Kubo
Software Mentions: 2
Published: over 9 years ago
10.1186/s12870-015-0587-1
Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass CommelinidaeCited by: 65
Author(s): Raimi Mohamed Redwan, Akzam Saidin, Vijay Kumar Subbiah
Software Mentions: 2
Published: over 9 years ago