pypi: blast | Projects | Ecosyste.ms: Papers

10.1002/2211-5463.12212

Crystal structure of the essential biotin-dependent carboxylase AccA3 fromMycobacterium tuberculosis
Cited by: 2
Author(s): M.D. Bennett, Martin Högbom
Software Mentions: 2
Published: over 8 years ago

10.1002/fsn3.2468

Gastrointestinal transit tolerance, cell surface hydrophobicity, and functional attributes of Lactobacillus Acidophilus strains isolated from Indigenous Dahi
Cited by: 12
Author(s): Wajiha Farid, Tariq Masud, Aamir Sohail, Nazir Ahmad, Syed Muhammad Saqlan Naqvi, Sipper Khan, Amjad Ali, S. A. Khalifa, Abid Hussain, Sartaj Ali, Maryum Saghir, Azhari Siddeeg, Muhammad Faisal Manzoor
Software Mentions: 2
Published: about 4 years ago

10.1186/s12864-017-3570-4

Leaf transcriptome analysis of a subtropical evergreen broadleaf plant, wild oil-tea camellia (Camellia oleifera), revealing candidate genes for cold acclimation
Cited by: 41
Author(s): Jiaming Chen, Xiaoqiang Yang, Xiaomao Huang, Shi-Hua Duan, Chengnian Long, Jiakuan Chen, Jun Rong
Software Mentions: 2
Published: over 8 years ago

10.3390/life10050068

Identification of Differentially Expressed Gene Transcripts in Porcine Endometrium during Early Stages of Pregnancy
Cited by: 5
Author(s): Mariusz Pierzchała, Dorota Pierzchała, Magdalena Ogłuszka, Ewa Poławska, Tadeusz Blicharski, Agnieszka Roszczyk, Agata Nawrocka, Paweł Urbański, Kamila Stepanow, Aleksandra Ciepłoch, A. Korwin‐Kossakowska, M.F.W. te Pas, Brygida Ślaska, Magdalena Buszewska-Forajta, J. M. Jaśkowski, Mateusz Sachajko, Magdalena Herudzińska, Bartosz M. Jaśkowski, Wojciech Niżański, Leyland Fraser, Urszula Czarnik, Haja N. Kadarmideen, Chandra Shekhar Pareek
Software Mentions: 2
Published: about 5 years ago

10.1002/2211-5463.12972

Recombinant transgelin‐like protein 1 fromMytilusshell induces formation of CaCO3polymorphic crystalsin vitro
Cited by: 1
Author(s): Yuting Jiang, Qi Sun, Meihua Fan, Jianyu He, Xiaolin Zhang, Hao Xu, Zhi Liao
Software Mentions: 2
Published: almost 5 years ago

10.3390/foods9091194

Determining the Authenticity of Shark Meat Products by DNA Sequencing
Cited by: 23
Author(s): Patrizia Marchetti, Anna Mottola, Roberta Piredda, Giuseppina Ciccarese, Angela Di Pinto
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-020-07069-w

Genome-wide identification and expression patterns analysis of the RPD3/HDA1 gene family in cotton
Cited by: 9
Author(s): Jingjing Zhang, Aimin Wu, Hengling Wei, Pengbo Hao, Qi Zhang, Miaomiao Tian, Yongsheng Xu, Shuaishuai Cheng, Xiaokang Fu, Liang Ma, Hantao Wang, Shuang Yu
Software Mentions: 2
Published: almost 5 years ago

10.12688/f1000research.10040.1

YeATSAM analysis of the walnut and chickpea transcriptome reveals key genes undetected by current annotation tools
Cited by: 8
Author(s): Sandeep Chakraborty, Pedro Manuel Martínez-García, Abhaya M. Dandekar
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-13-44

Grading amino acid properties increased accuracies of single point mutation on protein stability prediction
Cited by: 12
Author(s): Jianguo Liu, Xianjiang Kang
Software Mentions: 2
Published: over 13 years ago

10.1111/eva.13239

Natural CO2 seeps reveal adaptive potential to ocean acidification in fish
Cited by: 8
Author(s): Natalia Petit-Marty, Ivan Nagelkerken, Sean D. Connell, Celia Schunter
Software Mentions: 2
Published: about 4 years ago

10.1099/acmi.0.000028

Growth and metabolic characterization of four lactic acid bacteria species isolated from rice beer prepared in Assam, India
Cited by: 6
Author(s): Amlan Das, Manas Das, Takaaki Miyaji, Sankar Chandra Deka
Software Mentions: 2
Published: about 6 years ago

10.1186/s13072-020-00340-0

A comprehensive overview of bull sperm-borne small non-coding RNAs and their diversity across breeds
Cited by: 29
Author(s): Eli Sellem, Sylvain Marthey, Andrea Rau, Luc Jouneau, A. Bonnet, Jean‐Philippe Perrier, Sébastien Fritz, Chrystelle Le Danvic, Mekki Boussaha, Hélène Kiefer, Hélène Jammes, Laurent Schibler
Software Mentions: 2
Published: over 5 years ago

10.3389/fnbeh.2020.00160

Blast-Related Mild TBI Alters Anxiety-Like Behavior and Transcriptional Signatures in the Rat Amygdala
Cited by: 19
Author(s): Jennifer Blaze, Inbae Choi, Zhaoyu Wang, Michelle Umali, Natalia Mendelev, Anna E. Tschiffely, Stephen T. Ahlers, Gregory A. Elder, Yongchao Ge, Fatemeh Haghighi
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2016.00797

Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile “Ferrovum”
Cited by: 36
Author(s): Sophie R. Ullrich, Carolina González, Anja Poehlein, Judith S. Tischler, Rolf Daniel, Michael Schlömann, David S. Holmes, Martin Mühling
Software Mentions: 2
Published: about 9 years ago

10.1080/22221751.2018.1563455

Detection of human parvovirus 4 DNA in the patients with acute encephalitis syndrome during seasonal outbreaks of the disease in Gorakhpur, India
Cited by: 6
Author(s): Vidya A. Arankalle, Navin Srivastava, K. P. Kushwaha, Agnibha Sen, Ashwini Y. Ramdasi, Priyanka Patel, Sumeet Kuthe, Bangari Haldipur, Gajanan N. Sakpal, Kavita S. Lole, Nilesh Ingle
Software Mentions: 2
Published: over 6 years ago

10.3390/biom9040144

Host-Microbiome Synergistic Control on Sphingolipid Metabolism by Mechanotransduction in Model Arthritis
Cited by: 5
Author(s): Xiaoyuan Zhou, Valentina Devescovi, Yuanhua Liu, Jennifer E. Dent, Christine Nardini
Software Mentions: 2
Published: over 6 years ago

10.1111/j.1462-2920.2010.02193.x

Ironing out the wrinkles in the rare biosphere through improved OTU clustering
Cited by: 1,150
Author(s): Susan M. Huse, David B. Mark Welch, Hilary G. Morrison, Mitchell L. Sogin
Software Mentions: 2
Published: about 15 years ago

10.1111/j.1462-2920.2008.01667.x

The Cry48Aa-Cry49Aa binary toxin fromBacillus sphaericusexhibits highly restricted target specificity
Cited by: 37
Author(s): Gareth Wyn Jones, Margaret C. Wirth, R. G. Monnerat, Colin Berry
Software Mentions: 2
Published: almost 17 years ago

10.1186/1471-2164-12-436

Analysis of high-identity segmental duplications in the grapevine genome
Cited by: 31
Author(s): Giuliana Giannuzzi, Pietro D’Addabbo, Marica Gasparro, M. Martinelli, Francesco Nicola Carelli, Donato Antonacci, Mario Ventura
Software Mentions: 2
Published: almost 14 years ago

10.1002/ece3.5708

Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze River
Cited by: 9
Author(s): Fangyuan Cheng, Qian Wang, Pierpaolo Maisano Delser, Chenhong Li
Software Mentions: 2
Published: almost 6 years ago

10.1002/ece3.2028

Population genomics of local adaptation versus speciation in coral reef fishes ( Hypoplectrus spp, Serranidae)
Cited by: 31
Author(s): Sophie Picq, W. Owen McMillan, Oscar Puebla
Software Mentions: 2
Published: over 9 years ago

10.1080/22221751.2020.1773745

Genetic cluster analysis of SARS-CoV-2 and the identification of those responsible for the major outbreaks in various countries
Cited by: 45
Author(s): Xuemei Yang, Ning Dong, Edward Wai Chi Chan, Sheng Chen
Software Mentions: 2
Published: over 5 years ago

10.1111/1462-2920.13036

Closing the gaps on the viral photosystem‐ <scp>I</scp> psa <scp>DCAB</scp> gene organization
Cited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12862-017-1007-y

Segmental duplications: evolution and impact among the current Lepidoptera genomes
Cited by: 11
Author(s): Qian Zhao, Dongna Ma, Liette Vasseur, Minsheng You
Software Mentions: 2
Published: about 8 years ago

10.1155/2016/7823429

VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
Cited by: 19
Author(s): Yiqing Xu, Changwei Bi, Guoxin Wu, Suyun Wei, Xiaogang Dai, Tongming Yin, Ning Ye
Software Mentions: 2
Published: over 9 years ago

10.1016/j.csbj.2017.01.002

Deep Assessment of Genomic Diversity in Cassava for Herbicide Tolerance and Starch Biosynthesis
Cited by: 14
Author(s): Jorge Duitama, Lina Kafuri, Daniel Tello, Ana Marı́a Leiva, Bernhard J. Hofinger, Sneha Datta, Zaida Lentini, Ericson Aranzales, Bradley J. Till, Hernán Ceballos
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-019-3232-4

Protein sequence information extraction and subcellular localization prediction with gapped k-Mer method
Cited by: 8
Author(s): Yao Yao, Yaping Lv, Ling Li, Huimin Xu, Binbin Ji, Jing Chen, Chun Li, Bo Liao, Xuying Nan
Software Mentions: 2
Published: over 5 years ago

10.1007/s00284-014-0629-1

The Diversity of Bacteria Isolated from Antarctic Freshwater Reservoirs Possessing the Ability to Produce Polyhydroxyalkanoates
Cited by: 27
Author(s): Sławomir Ciesielski, Dorota Górniak, Justyna Możejko, Aleksander Świątecki, Jakub Grzesiak, Marek K. Zdanowski
Software Mentions: 2
Published: about 11 years ago

10.1186/s12862-015-0423-0

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
Cited by: 304
Author(s): Stephen A. Smith, Michael J. Moore, Joseph W. Brown, Ya Yang
Software Mentions: 2
Published: almost 10 years ago

10.3390/biology8030060

The Dynamics of the Cell Wall Proteome of Developing Alfalfa Stems
Cited by: 10
Author(s): Kjell Sergeant, Bruno Printz, Gea Guerriero, Jenny Renaut, Stanley Lutts, Jean-François Hausman
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0076095

Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia
Cited by: 20
Author(s): Jan Šlapeta, Marjorie C. Linares
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0103160

Characterization of Hepatitis C Virus Genotypes by Direct Sequencing of HCV 5′UTR Region of Isolates from Saudi Arabia
Cited by: 13
Author(s): Medhat K. Shier, Mohammad S. El-Wetidy, Hebatallah H. Ali, Mohammad M. Al‐Qattan
Software Mentions: 2
Published: almost 11 years ago

10.1186/1745-6150-1-12

Cited by: 10
Author(s): Dimitris Papamichail, Nicholas Delihas
Software Mentions: 2
Published: over 19 years ago

10.1099/mgen.0.000196

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Cited by: 162
Author(s): Margaret M C Lam, Ryan R. Wick, Kelly L. Wyres, Claire L. Gorrie, Louise M. Judd, Adam Jenney, Sylvain Brisse, Kathryn E. Holt
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-13-221

Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses
Cited by: 46
Author(s): Bianca Dibari, Florent Murat, Audrey Chosson, Véronique Gautier, Charles Poncet, Philippe Lecomte, Ingrid Mercier, Hélène Bergès, Caroline Pont, A. Blanco, Jérôme Salse
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0000169

Vertebrate Vitellogenin Gene Duplication in Relation to the “3R Hypothesis”: Correlation to the Pelagic Egg and the Oceanic Radiation of Teleosts
Cited by: 181
Author(s): Roderick Nigel Finn, Børge André Kristoffersen
Software Mentions: 2
Published: over 18 years ago

10.1007/s13205-014-0238-5

Diversified diazotrophs associated with the rhizosphere of Western Indian Himalayan native red kidney beans (Phaseolus vulgaris L.)
Cited by: 24
Author(s): Deep Chandra Suyal, Amit Yadav, Yogesh S. Shouche
Software Mentions: 2
Published: about 11 years ago

10.1186/s13062-016-0144-3

Compartmentalization in PVC super-phylum: evolution and impact
Cited by: 15
Author(s): Sandrine Pinos, Pierre Pontarotti, Didier Raoult, Jean-Pierre Baudoin, Isabelle Pagnier
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0056093

Rapid Focused Sequencing: A Multiplexed Assay for Simultaneous Detection and Strain Typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis
Cited by: 12
Author(s): Rosemary S. Turingan, Hans-Ulrich Thomann, Anna Zolotova, Eugene Tan, Richard F. Selden
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0179027

Transcriptome profiling analysis reveals the role of silique in controlling seed oil content in Brassica napus
Cited by: 7
Author(s): Ke-Lin Huang, Zhang Mei-li, Guangjing Ma, Huan Wu, Xiaoming Wu, Feng Ren, Xuebao Li
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0208735

Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016
Cited by: 8
Author(s): Vaishnavi Pattabiraman, Lee S. Katz, Jessica C. Chen, Andre McCullough, Eija Trees
Software Mentions: 2
Published: over 6 years ago

10.1155/2019/3780245

Iterative Variable Gene Discovery from Whole Genome Sequencing with a Bootstrapped Multiresolution Algorithm
Cited by: 1
Author(s): David N. Olivieri, Francisco Gambón-Deza
Software Mentions: 2
Published: over 6 years ago

10.1099/mgen.0.000279

Domestication of Campylobacter jejuni NCTC 11168
Cited by: 21
Author(s): Ben Pascoe, Lisa Williams, Jessica K. Calland, Guillaume Méric, Matthew D. Hitchings, Myles Dyer, Joseph Ryder, Sophie Shaw, Bruno Silvester Lopes, Cosmin Chintoan-Uta, Elaine Allan, Ana Maria Centola Vidal, Catherine Fearnley, Paul Everest, Justin A. Pachebat, Tristan A Cogan, Mark P. Stevens, T. J. Humphrey, Thomas S. Wilkinson, Alison J. Cody, Frances M. Colles, Keith A. Jolley, Martin C. J. Maiden, Norval James Colin Strachan, Bruce M. Pearson, Dennis Linton, Brendan W. Wren, Julian Parkhill, David J. Kelly, Arnoud H. M. van Vliet, Ken J. Forbes, Samuel K. Sheppard
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-019-5545-0

An insight into the sialotranscriptome and virome of Amazonian anophelines
Cited by: 21
Author(s): Vera Margarete Scarpassa, Humberto Julio Debat, Ronildo Baiatone Alencar, José Ferreira Saraiva, Eric Calvo, Bruno Arcà, José M. C. Ribeiro
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-015-1737-4

Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress
Cited by: 22
Author(s): Valeria Wallace-Salinas, Daniel P. Brink, Dag Ahrén, Marie-Françoise Gorwa-Grauslund
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2164-12-283

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing
Cited by: 64
Author(s): Anna W. Santure, Jacob Gratten, Jim A. Mossman, Ben C. Sheldon, Jon Slate
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0175116

Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays
Cited by: 39
Author(s): Lívia Costa de Oliveira, Tessália Diniz Luerce Saraiva, Wanderson M. Silva, Ulisses de Pádua Pereira, Bruno C. Campos, Leandro de Jesus Benevides, Flávia Souza Rocha, Henrique César Pereira Figueiredo, Vasco Azevedo, Siomar C. Soares
Software Mentions: 2
Published: over 8 years ago

10.1186/1472-6807-7-10

Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
Cited by: 70
Author(s): D.J. Ferraro, Eric N. Brown, Chung Huang Yu, Rebecca E. Parales, David T. Gibson, S. Ramaswamy
Software Mentions: 2
Published: over 18 years ago

10.1186/s12864-016-3266-1

Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii
Cited by: 31
Author(s): Yan Zhu, Longxian Chen, Chengjun Zhang, Pei Hao, Xinyun Jing, Xuan Li
Software Mentions: 2
Published: over 8 years ago

10.1186/s13104-015-1683-x

Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates
Cited by: 1
Author(s): Mbaye Tine
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0026792

Novel Adiponectin Variants Identified in Type 2 Diabetic Patients Reveal Multimerization and Secretion Defects
Cited by: 13
Author(s): Prapaporn Jungtrakoon, Nattachet Plengvidhya, Watip Tangjittipokin, Sarin Chimnaronk, Wanisa Salaemae, Nalinee Chongjaroen, Kanjana Chanprasert, Jatuporn Sujjitjoon, Chatchawan Srisawat, Pa‐thai Yenchitsomanus
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0190938

Extension of the viral ecology in humans using viral profile hidden Markov models
Cited by: 22
Author(s): Zurab Bzhalava, Emilie Hultin, Joakim Dillner
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0150719

REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence Reads
Cited by: 49
Author(s): Chong Chu, Rasmus Nielsen, Yufeng Wu
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-13-621

Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major
Cited by: 37
Author(s): Vijayendran Gowri, Indira Ghosh, Amit Sharma, Rentala Madhubala
Software Mentions: 2
Published: over 12 years ago

10.1186/1753-6561-3-S4-S14

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
Cited by: 11
Author(s): Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornshøj, Magali SanCristobal, Pierre Mormède, Dirk-Jan de Koning
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0002103

The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria
Cited by: 128
Author(s): Sara H. Thomas, Ryan D. Wagner, Adrián K. Arakaki, Jeffrey Skolnick, John R. Kirby, Lawrence J. Shimkets, Robert A. Sanford, Frank E. Löffler
Software Mentions: 2
Published: about 17 years ago

10.1186/s12870-019-1785-z

Development and characterisation of interspecific hybrid lines with genome-wide introgressions from Triticum timopheevii in a hexaploid wheat background
Cited by: 21
Author(s): Uma Devi, Surbhi Grewal, Caiyun Yang, Stella Hubbart‐Edwards, Duncan Scholefield, Stephen Ashling, Amanda Burridge, Ian P. King, Julie King
Software Mentions: 2
Published: about 6 years ago

10.1186/s12870-020-2239-3

Genome-wide identification and analysis of B-BOX gene family in grapevine reveal its potential functions in berry development
Cited by: 40
Author(s): Hongru Wei, Peipei Wang, Jianqing Chen, Changjun Li, Yongzhang Wang, Yuan Yang, Jinggui Fang, Xiangpeng Leng
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0155851

Integrated Metabolo-Transcriptomics Reveals Fusarium Head Blight Candidate Resistance Genes in Wheat QTL-Fhb2
Cited by: 80
Author(s): Dhananjay Dhokane, Shailesh Karre, Ajjamada C. Kushalappa, Curt A. McCartney
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0142002

dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42
Cited by: 25
Author(s): Bin Fan, Lei Li, Yapeng Chao, Konrad U. Förstner, Jörg Vogel, Rainer Borriss, Xiao‐Qin Wu
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0111655

Unique Gene Expression Profile of the Proliferating Xenopus Tadpole Tail Blastema Cells Deciphered by RNA-Sequencing Analysis
Cited by: 18
Author(s): Hiroshi Tsujioka, Takekazu Kunieda, Yuki Katou, Katsuhiko Shirahige, Takeo Kubo
Software Mentions: 2
Published: over 10 years ago

10.1186/s12870-015-0587-1

Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae
Cited by: 65
Author(s): Raimi Mohamed Redwan, Akzam Saidin, Vijay Kumar Subbiah
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2164-9-254

Exploiting orthologue diversity for systematic detection of gain-of-function phenotypes
Cited by: 5
Author(s): Marialuisa Martelli, Claudio Isella, Alessia Mira, Li‐Chen Fu, Daniela Cantarella, Enzo Medico
Software Mentions: 2
Published: about 17 years ago

10.1371/journal.pone.0194071

Candidate genes for first flower node identified in pepper using combined SLAF-seq and BSA
Cited by: 20
Author(s): Xiaofen Zhang, Guoyun Wang, Bin Chen, Heshan Du, Fenglan Zhang, Haiying Zhang, Qian Wang, Sansheng Geng
Software Mentions: 2
Published: over 7 years ago

10.1186/s12870-018-1594-9

Transciptome profiling at early infection of Elaeis guineensis by Ganoderma boninense provides novel insights on fungal transition from biotrophic to necrotrophic phase
Cited by: 27
Author(s): Mohammad Nazri Abdul Bahari, Nurshafika Mohd Sakeh, Siti Nor Akmar Abdullah, Redzyque Ramza Ramli, Saeid Kadkhodaei
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0151574

Plant Tandem CCCH Zinc Finger Proteins Interact with ABA, Drought, and Stress Response Regulators in Processing-Bodies and Stress Granules
Cited by: 39
Author(s): Srimathi Bogamuwa, Jyan-Chyun Jang
Software Mentions: 2
Published: over 9 years ago

10.1099/acmi.0.000103

First hybrid complete genome of Aeromonas veronii reveals chromosome-mediated novel structural variant mcr-3.30 from a human clinical sample
Cited by: 12
Author(s): Naveen Kumar Devanga Ragupathi, Dhiviya Prabaa Muthuirulandi Sethuvel, Shalini Anandan, Dhivya Murugan, Kalaiarasi Asokan, Ramya Gajaraj Neethi Mohan, Karthick Vasudevan, Thirumal Kumar D, George Priya Doss C, Balaji Veeraraghavan
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2229-14-99

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
Cited by: 204
Author(s): Nicola Vitulo, Claudio Forcato, Elisa Corteggiani Carpinelli, Andrea Telatin, Davide Campagna, Michela D’Angelo, Rosanna Zimbello, Massimiliano Corso, Alessandro Vannozzi, Claudio Bonghi, Margherita Lucchin, Giorgio Valle
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0104878

Molecular Analysis of Aedes aegypti Classical Protein Tyrosine Phosphatases Uncovers an Ortholog of Mammalian PTP-1B Implicated in the Control of Egg Production in Mosquitoes
Cited by: 7
Author(s): Débora Monteiro Moretti, Lalima G. Ahuja, Rodrigo Dutra Nunes, Cecília Oliveira Cudischevitch, Carlos Renato de Oliveira Daumas-Filho, Priscilla Medeiros-Castro, Guilherme Ventura-Martins, Willy Jablonka, Felipe Gazos-Lopes, Raquel Senna, Marcos Henrique Ferreira Sorgine, Klaus Hartfelder, Margareth Lara Capurro, Geórgia C. Atella, Rafael D. Mesquita, Mário A.C. Silva-Neto
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0057459

Metagenomic Detection of Viral Pathogens in Spanish Honeybees: Co-Infection by Aphid Lethal Paralysis, Israel Acute Paralysis and Lake Sinai Viruses
Cited by: 89
Author(s): Fredrik Granberg, Marina Vicente-Rubiano, Consuelo Rubio-Guerri, Oskar E. Karlsson, Deborah Kukielka, Sándor Bélak, José Manuel Sánchez-Vizcaíno
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0179723

Red rot resistant transgenic sugarcane developed through expression of β-1,3-glucanase gene
Cited by: 26
Author(s): Shivani Nayyar, Bipen Kumar Sharma, Ajinder Kaur, Anu Kalia, Gulzar S. Sanghera, K. S. Thind, Inderjit Singh Yadav, Jagdeep Singh Sandhu
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0138078

Co-Administration of Cholesterol-Lowering Probiotics and Anthraquinone from Cassia obtusifolia L. Ameliorate Non-Alcoholic Fatty Liver
Cited by: 52
Author(s): Mengji Lu, Youcai Tang, Ming Li, Ping–Chang Yang, Zhiqiang Liu, Jieli Yuan, Pengyuan Zheng
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0192452

Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3
Cited by: 29
Author(s): François P. Douillard, Diego Mora, Robyn T. Eijlander, Michiel Wels, Willem M. de Vos
Software Mentions: 2
Published: over 7 years ago

10.1186/s12870-019-1882-z

Ethylene-mediated improvement in sucrose accumulation in ripening sugarcane involves increased sink strength
Cited by: 33
Author(s): Zhongliang Chen, Cui-Xian Qin, Miao Wang, Fang Liao, Qing Liao, Xihui Liu, Yang‐Rui Li, Prakash Lakshmanan, M. I. E. Long, Dongliang Huang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-021-08001-6

Revelation of candidate genes and molecular mechanism of reproductive seasonality in female rohu (Labeo rohita Ham.) by RNA sequencing
Cited by: 2
Author(s): Sarika Jaiswal, Samiran Nandi, Mir Asif Iquebal, Rahul Singh Jasrotia, Swagat Kumar Patra, Gayatri Mishra, Uday Kumar Udit, Dinesh Kumar Sahu, U. B. Angadi, Prem Kumar Meher, P. Routray, Jitendra Kumar Sundaray, Deepti Verma, Paramananda Das, P. Jayasankar, Anil Rai, Dinesh Kumar
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0255091

The complete mitochondrial genome of Cycas debaoensis revealed unexpected static evolution in gymnosperm species
Cited by: 5
Author(s): Sadaf Habib, Shanshan Dong, Yang Liu, Wenbo Liao, Shouzhou Zhang
Software Mentions: 2
Published: about 4 years ago

10.1186/s12870-018-1525-9

Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr
Cited by: 7
Author(s): Yi Gan, Yu Song, Yadong Chen, Hongbo Liu, Dongdong Yang, Qian-Yu XU, Zhifu Zheng
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0000579

Indexing Strategies for Rapid Searches of Short Words in Genome Sequences
Cited by: 72
Author(s): Christian Iseli, Giovanna Ambrosini, Philipp Bücher, C. Victor Jongeneel
Software Mentions: 2
Published: about 18 years ago

10.1371/journal.pone.0018359

Multiple Changes in Peptide and Lipid Expression Associated with Regeneration in the Nervous System of the Medicinal Leech
Cited by: 23
Author(s): Céline Mériaux, Karim Arafah, Aurélie Tasiemski, Maxence Wisztorski, Jocelyne Bruand, Céline Boidin-Wichlacz, Annie Desmons, Delphine Debois, Olivier Laprévôte, Alain Brunelle, Terry Gaasterland, Eduardo R. Macagno, Isabelle Fournier, Michel Salzet
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0019328

Identification of Hyaloperonospora arabidopsidis Transcript Sequences Expressed during Infection Reveals Isolate-Specific Effectors
Cited by: 57
Author(s): Adriana Cabral, Joost H. M. Stassen, Michael Seidl, Jaqueline Bautor, Jane E. Parker, Guido Van den Ackerveken
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0256802

Metabolomics integrated with transcriptomics reveals the distribution of iridoid and crocin metabolic flux in Gardenia jasminoides Ellis
Cited by: 10
Author(s): Yuan Pan, Zhao Xiao, Yu Wang, Jun Tan, Da-Xia Chen
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12870-015-0636-9

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil
Cited by: 21
Author(s): Emmanuel González, Nicholas J. B. Brereton, Julie Marleau, Werther Guidi Nissim, Michel Labrecque, Frédéric E. Pitre, Simon Joly
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2148-7-71

Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species
Cited by: 59
Author(s): Radhey S. Gupta, Emily Lorenzini
Software Mentions: 2
Published: over 18 years ago

10.1186/s12870-021-02850-9

Reduced expression of a subunit gene of sucrose non-fermenting 1 related kinase, PpSnRK1βγ, confers flat fruit abortion in peach by regulating sugar and starch metabolism
Cited by: 1
Author(s): Jian Guo, Ke Cao, Jia‐Long Yao, Cecilia Deng, Yong Li, Guoqiang Zhu, Weichao Fang, Chang Wen Chen, Xinwei Wang, Jinlong Wu, Wen‐Wu Guo, Lirong Wang
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0013241

Comparative Genomic Evidence for a Complete Nuclear Pore Complex in the Last Eukaryotic Common Ancestor
Cited by: 133
Author(s): Nadja Neumann, Daniel Lundin, Anthony M. Poole
Software Mentions: 2
Published: almost 15 years ago

10.1186/s12870-017-0983-9

Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s
Cited by: 47
Author(s): LI Xu-yan, Xin Xie, Ji Li, Yuhai Cui, Yanming Hou, Lulu Zhai, Xiao Wang, Yanli Fu, Ranran Liu, Shaomin Bian
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0052302

SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies
Cited by: 24
Author(s): Eric Pante, Audrey Rohfritsch, Vanessa Becquet, Khalid Belkhir, Nicolas Bierne, Pascale Garcia
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-213X-4-11

Regulation of signaling genes by TGFβ during entry into dauer diapause in C. elegans
Cited by: 74
Author(s): Tao Liu, Karen K. Zimmerman, Garth I. Patterson
Software Mentions: 2
Published: almost 21 years ago

10.1371/journal.pone.0101673

Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus
Cited by: 159
Author(s): Harsh Raman, Rosy Raman, Andrzej Kilian, Frank Detering, Jason Carling, Neil Coombes, Simon Diffey, Gururaj Kadkol, David Edwards, M. E. McCully, Pradeep Ruperao, Isobel A. P. Parkin, Jacqueline Batley, David J. Luckett, Neil Wratten
Software Mentions: 2
Published: about 11 years ago

10.1186/s12870-021-03024-3

Genome-wide identification and functional analysis of U-box E3 ubiquitin ligases gene family related to drought stress response in Chinese white pear (Pyrus bretschneideri)
Cited by: 18
Author(s): Chunmeng Wang, Bobo Song, Yuqin Dai, Shaoling Zhang, Xiaosan Huang
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0117562

Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities
Cited by: 170
Author(s): Dominique A. Cowart, Miguel Pinheiro, Olivier Mouchel, Marion Maguer, Jacques Grall, Jacques Miné, Sophie Arnaud–Haond
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0239605

Comparative transcriptome analysis reveals heat stress-responsive genes and their signalling pathways in lilies (Lilium longiflorum vs. Lilium distichum)
Cited by: 3
Author(s): Yongyao Fu, Liping Yang, Haihong Gao, Wei Xü, Qiang Li, LI Hong-qun, Jian Gao
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2164-15-1022

Genome-wide mapping of matrix attachment regions in Drosophila melanogaster
Cited by: 27
Author(s): Rashmi U. Pathak, Arumugam Srinivasan, Rakesh K. Mishra
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0069476

The Complete Mitochondrial Genome of Gossypium hirsutum and Evolutionary Analysis of Higher Plant Mitochondrial Genomes
Cited by: 43
Author(s): Guozheng Liu, Dandan Cao, Shuangshuang Li, Aiguo Su, Jianing Geng, Corrinne E. Grover, Songnian Hu, Jinping Hua
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0251305

Evaluation of the S-locus in Prunus domestica, characterization, phylogeny and 3D modelling
Cited by: 6
Author(s): Angel V. Fernández i Martí, Sarah Castro, Theodore M. DeJong, Richard S. Dodd
Software Mentions: 2
Published: about 4 years ago

10.1186/s12870-019-1908-6

Time-series transcriptome provides insights into the gene regulation network involved in the volatile terpenoid metabolism during the flower development of lavender
Cited by: 32
Author(s): Hui Li, Jingrui Li, Yanmei Dong, Haiping Hao, Zhengyi Ling, Hongtong Bai, Huafang Wang, Hongxia Cui, Lei Shi
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0206154

In silico identification of conserved miRNAs and their selective target gene prediction in indicine (Bos indicus) cattle
Cited by: 11
Author(s): Quratulain Hanif, Muhammad Farooq, Imran Amin, Shahid Mansoor, Yi Zhang, Qaiser M. Khan
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0023549

Characterization and Comparative Profiling of MiRNA Transcriptomes in Bighead Carp and Silver Carp
Cited by: 59
Author(s): Wei Chi, Chaobo Tong, Xiangchao Gan, Shunping He
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0195702

A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence
Cited by: 16
Author(s): Nicholas Delihas
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0152147

Odorant Receptors of the New Zealand Endemic Leafroller Moth Species Planotortrix octo and P. excessana
Cited by: 14
Author(s): Bernd Steinwender, Amali H. Thrimawithana, Ross N. Crowhurst, Richard D. Newcomb
Software Mentions: 2
Published: over 9 years ago

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Papers Mentioning blast 1,819