pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/1471-2164-8-428

Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison
Cited by: 226
Author(s): S. Pilati, Michele Perazzolli, A. Malossini, Alessandro Cestaro, L. Dematté, Paolo Fontana, A. Dal Rì, Roberto Viola, Riccardo Velasco, C. Moser
Software Mentions: 3
Published: over 17 years ago

10.3389/fmicb.2020.555795

Environmental Parameters and Substrate Type Drive Microeukaryotic Community Structure During Short-Term Experimental Colonization in Subtropical Eutrophic Freshwaters
Cited by: 7
Author(s): Changyu Zhu, David Bass, Yutao Wang, Zhuo Shen, Weibo Song, Zhenzhen Yi
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2105-15-61

CDSbank: taxonomy-aware extraction, selection, renaming and formatting of protein-coding DNA or amino acid sequences
Cited by: 2
Author(s): Bart Hazes
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2164-15-853

Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses
Cited by: 109
Author(s): Zarqa Nawaz, Kaleem Ullah Kakar, Mumtaz Ali Saand, Qingyao Shu
Software Mentions: 3
Published: almost 11 years ago

10.1186/1471-2164-12-104

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)
Cited by: 176
Author(s): José Blanca, Joaquı́n Cañizares, Cristina Roig, Peio Ziarsolo, F. Nuez, Belén Picó
Software Mentions: 3
Published: over 14 years ago

10.1128/AEM.02885-19

Nutrient Level Determines Biofilm Characteristics and Subsequent Impact on Microbial Corrosion and Biocide Effectiveness
Cited by: 48
Author(s): Silvia J. Salgar-Chaparro, Kateřina Lepková, Thunyaluk Pojtanabuntoeng, Adam Darwin, Laura L. Machuca
Software Mentions: 3
Published: over 5 years ago

10.1186/s12870-019-2074-6

Transcriptomic and metabolomic profiling provide novel insights into fruit development and flesh coloration in Prunus mira Koehne, a special wild peach species
Cited by: 37
Author(s): Ying Hong, Jian Shi, Shanshan Zhang, Gesang Pingcuo, Shuo Wang, Fan Zhao, Yongning Cui, Xiuli Zeng
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-015-0833-4

GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas
Cited by: 33
Author(s): Guillaume Rivière, Christophe Klopp, Ibouniyamine Nabihoudine, Arnaud Huvet, Pierre Boudry, Pascal Favrel
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pgen.1000732

Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome
Cited by: 332
Author(s): Regina S. Baucom, James C. Estill, Cristian Chaparro, Naadira C. Upshaw, Ansuya Jogi, Jean-Marc Deragon, Richard P. Westerman, Phillip SanMiguel, Jeffrey L. Bennetzen
Software Mentions: 3
Published: over 15 years ago

10.3389/fmicb.2017.00825

Dietary High Zinc Oxide Modulates the Microbiome of Ileum and Colon in Weaned Piglets
Cited by: 63
Author(s): Ting Yu, Cui Zhu, Shicheng Chen, Lei Gao, Hang Lv, Ruowei Feng, Qingfeng Zhu, Jianing Xu, Zhuang Chen, Zongyong Jiang
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2018.00217

Identification of Metabolites and Transcripts Involved in Salt Stress and Recovery in Peanut
Cited by: 70
Author(s): Feng Cui, Na Sui, Guangyou Duan, Yiyang Liu, Han Yan, Shanshan Liu, Shubo Wan, Guowei Li
Software Mentions: 3
Published: over 7 years ago

10.1186/s13099-016-0084-6

Genome sequence of Escherichia coli NCCP15653, a group D strain isolated from a diarrhea patient
Cited by: 2
Author(s): Min Jung Kwak, Myoung Soo Kim, Soon Kyeong Kwon, Seung Hak Cho, Jihyun F. Kim
Software Mentions: 3
Published: over 9 years ago

10.3389/fgene.2018.00371

De novo Assembly and Transcriptome Characterization of Opisthopappus (Asteraceae) for Population Differentiation and Adaption
Cited by: 8
Author(s): Maofeng Chai, Shengnan Wang, Jie He, Wei Chen, Zelu Fan, Jia Li, Yiling Wang
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-017-05222-2

Impacts of Early Life Stress on the Methylome and Transcriptome of Atlantic Salmon
Cited by: 41
Author(s): Hooman K. Moghadam, Hanne Johnsen, Nick Robinson, Øivind Andersen, Even H. Jørgensen, Hanne Johnsen, Vegar J. Bæhr, Helge Tveiten
Software Mentions: 3
Published: about 8 years ago

10.1111/febs.14976

Burkholderia pseudomallei <scp>d</scp> ‐alanine‐ <scp>d</scp> ‐alanine ligase; detailed characterisation and assessment of a potential antibiotic drug target
Cited by: 3
Author(s): L. Diaz-Saez, Leah S. Torrie, Stuart P. McElroy, David W. Gray, William N. Hunter
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2015.00955

Direct sequencing of human gut virome fractions obtained by flow cytometry
Cited by: 18
Author(s): Mária Džunková, Giuseppe D’Auria, Andrés Moya
Software Mentions: 3
Published: almost 10 years ago

10.1002/2211-5463.12084

Age‐dependent transcriptional and epigenomic responses to light exposure in the honey bee brain
Cited by: 15
Author(s): Nils B. Becker, Robert Kucharski, Wolfgang Rößler, Ryszard Maleszka
Software Mentions: 3
Published: about 9 years ago

10.3389/fmicb.2021.673512

A Comparative Analysis on the Structure and Function of the Panax notoginseng Rhizosphere Microbiome
Cited by: 12
Author(s): Ling Kui, Baozheng Chen, Jian Chen, Rouhallah Sharifi, Dong Yang, Zhanjiang Zhang, Jun Miao
Software Mentions: 3
Published: about 4 years ago

10.3389/fcimb.2020.00374

TickSialoFam (TSFam): A Database That Helps to Classify Tick Salivary Proteins, a Review on Tick Salivary Protein Function and Evolution, With Considerations on the Tick Sialome Switching Phenomenon
Cited by: 36
Author(s): José M. C. Ribeiro, Ben J. Mans
Software Mentions: 3
Published: about 5 years ago

10.3389/fcimb.2020.00041

Tick-Borne Encephalitis Virus Infection Alters the Sialome of Ixodes ricinus Ticks During the Earliest Stages of Feeding
Cited by: 9
Author(s): Charles E. Hart, José M. C. Ribeiro, Mária Kazimírová, Saravanan Thangamani
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-41189-y

Identifying High Confidence microRNAs in the Developing Seeds of Jatropha curcas
Cited by: 11
Author(s): Mo Yang, Hongyu Lu, Feiqun Xue, Lanqing Ma
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-42686-w

Enhanced early-life nutrition upregulates cholesterol biosynthetic gene expression and Sertoli cell maturation in testes of pre-pubertal Holstein bulls
Cited by: 12
Author(s): Chinju Johnson, Alysha Dance, Igor Kovalchuk, John P. Kastelic, Jacob C. Thundathil
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2021.635772

Comprehensive Ecological and Geographic Characterization of Eukaryotic and Prokaryotic Microbiomes in African Anopheles
Cited by: 5
Author(s): Eugeni Belda, Boubacar Coulibaly, Tullu Bukhari, Karin Eiglmeier, Raymond Kone, Mamadou B. Coulibaly, Soumanaba Zongo, Megan Barry, Awa Gnémé, Wamdaogo Moussa Guelbéogo, Abdoul Habib Béavogui, Sékou F. Traorè, N’Falé Sagnon, Kenneth D. Vernick, Michelle M. Riehle
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2018.01635

New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
Cited by: 49
Author(s): Marie E. Kroeger, Tom O. Delmont, A. Murat Eren, Kyle Meyer, Jiarong Guo, Kiran Yasmin Khan, Jorge L. Mazza Rodrigues, Brendan J. M. Bohannan, Susannah G. Tringe, Clóvis Daniel Borges, James M. Tiedje, Siu Mui Tsai, Klaus Nüsslein
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-019-55896-z

System OMICs analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster
Cited by: 7
Author(s): Julia Bespyatykh, Egor Shitikov, Andrei Guliaev, Alexander Smolyakov, Ksenia M. Klimina, Vladimir A. Veselovsky, М В Малахова, Georgij Arapidi, Marine Dogonadze, Olga Manicheva, Dmitry Bespiatykh, Igor Mokrousov, Viacheslav Zhuravlev, Elena N. Ilina, Vadim M. Govorun
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-65724-4

Simultaneous identification of animal-derived components in meats using high-throughput sequencing in combination with a custom-built mitochondrial genome database
Cited by: 6
Author(s): Yinan Zhang, Qinfeng Qu, RAO Mingzhen, Zhang Nana, Yu Zhao, Fei Tao
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2014.00531

Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships
Cited by: 58
Author(s): Maggie C. Y. Lau, Connor Cameron, Cara Magnabosco, C. Titus Brown, Faye Schilkey, Sharon L. Grim, Sarah Hendrickson, Michael J. Pullin, Barbara Sherwood Lollar, Esta van Heerden, Thomas L. Kieft, Tullis C. Onstott
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2021.707281

Comparative Mitogenomic Analysis and the Evolution of Rhizoctonia solani Anastomosis Groups
Cited by: 3
Author(s): Runmao Lin, Y. L. Xia, Yao Liu, Danhua Zhang, Xiang Xiao, Xianyu Niu, Linjia Jiang, Xiaolin Wang, Aiping Zheng
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-82201-8

A metabolomic approach to target antimalarial metabolites in the Artemisia annua fungal endophytes
Cited by: 24
Author(s): Hani A. Alhadrami, Ahmed M. Sayed, Ahmed O. El-Gendy, Yara I. Shamikh, Yasser Gaber, Walid Bakeer, Noheir H. Sheirf, Eman Zekry Attia, Gehan M. Shaban, Basma Ali Khalifa, Che Julius Ngwa, Gabriele Pradel, Mostafa E. Rateb, Hossam M. Hassan, Dalal Hussien M. Alkhalifah, Usama Ramadan Abdelmohsen, Wael N. Hozzein
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.02384

Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone
Cited by: 48
Author(s): Clara A. Fuchsman, Allan H. Devol, Jaclyn K. Saunders, Cedar McKay, Gabrielle Rocap
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2021.645353

Genome and Evolutionary Analysis of Nosema ceranae: A Microsporidian Parasite of Honey Bees
Cited by: 10
Author(s): Qiang Huang, Zhi Hao Wu, Wen Feng Li, Rui Guo, Jin Shan Xu, Xiao Qun Dang, Gang Zheng, Yan Ping Chen, Jay D. Evans
Software Mentions: 3
Published: about 4 years ago

10.1186/s13072-021-00397-5

Dynamics of cattle sperm sncRNAs during maturation, from testis to ejaculated sperm
Cited by: 21
Author(s): Eli Sellem, Sylvain Marthey, Andrea Rau, Luc Jouneau, A. Bonnet, Chrystelle Le Danvic, Benoît Guyonnet, Hélène Kiefer, Hélène Jammes, Laurent Schibler
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2017.01812

Studying the Differences of Bacterial Metabolome and Microbiome in the Colon between Landrace and Meihua Piglets
Cited by: 21
Author(s): Shijuan Yan, Cui Zhu, Ting Yu, Wenjie Huang, Jianfeng Huang, Qian Kong, Jiandang Shi, Zhongjian Chen, Qinjian Liu, Shaolei Wang, Zongyong Jiang, Zhuang Chen
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2019.00448

Multiple Recombination Events Drive the Current Genetic Structure of Xanthomonas perforans in Florida
Cited by: 40
Author(s): Sujan Timilsina, Juliana A. Pereira-Martin, Gerald V. Minsavage, Fernanda Iruegas-Bocardo, Peter Abrahamian, Neha Potnis, Bryan Kolaczkowski, Gary E. Vallad, Erica M. Goss, Jeffrey B. Jones
Software Mentions: 3
Published: over 6 years ago

10.1155/2016/6261490

Validation of Housekeeping Genes to Study Human Gingival Stem Cells and TheirIn VitroOsteogenic Differentiation Using Real-Time RT-qPCR
Cited by: 14
Author(s): Ihsène Taïhi, Ali Nassif, Tsouria Berbar, Juliane Isaac, Ariane Berdal, Bruno Gogly, Benjamin Fournier
Software Mentions: 3
Published: over 9 years ago

10.1155/2018/5692840

Noncoding RNA Transcripts during Differentiation of Induced Pluripotent Stem Cells into Hepatocytes
Cited by: 5
Author(s): Aniela Skrzypczyk, Stephanie Kehr, Ilona Krystel, Stephan H. Bernhart, Shibashish Giri, Augustinus Bader, Peter F. Stadler
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2021.713224

Genome-Wide Identification and Expression Analysis of Metal Tolerance Protein Gene Family in Medicago truncatula Under a Broad Range of Heavy Metal Stress
Cited by: 18
Author(s): Ahmed H. El-Sappah, Rania G. Elbaiomy, Ahmed S. Elrys, Yu Wang, Yumin Zhu, Qiulan Huang, Yan Ke, Xingbo Zhao, Yun Li, Khaled A. El‐Tarabily, Jia Li
Software Mentions: 3
Published: almost 4 years ago

10.3390/toxins10120503

Discovery of Novel Conotoxin Candidates Using Machine Learning
Cited by: 18
Author(s): Qing Li, Maren Watkins, Samuel D. Robinson, Helena Safavi-Hemami, Mark Yandell
Software Mentions: 3
Published: over 6 years ago

10.1038/tp.2016.181

Impaired GABA synthesis, uptake and release are associated with depression-like behaviors induced by chronic mild stress
Cited by: 110
Author(s): Kewei Ma, Aidong Xu, Sheng Cui, Sun Mr, Xue Yc, Wang Jh
Software Mentions: 3
Published: almost 9 years ago

10.1128/mSphere.00305-16

Coordinate Regulation of Antimycin and Candicidin Biosynthesis
Cited by: 34
Author(s): Thomas C McLean, Paul A. Hoskisson, Ryan F. Seipke
Software Mentions: 3
Published: over 8 years ago

10.1128/mSystems.00187-18

New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract
Cited by: 302
Author(s): Isabel F. Escapa, Tsute Chen, Yanmei Huang, Prasad Gajare, Floyd E. Dewhirst, Katherine P. Lemon
Software Mentions: 3
Published: over 6 years ago

10.3389/fimmu.2019.00120

Vaccine-Induced Protection Against Furunculosis Involves Pre-emptive Priming of Humoral Immunity in Arctic Charr
Cited by: 14
Author(s): Laura M. Braden, S. K. Whyte, Alyson Brown, Carter Van Iderstine, Corinne Letendre, David B. Groman, J. Lewis, Sara L. Purcell, Tiago S. Hori, Mark D. Fast
Software Mentions: 3
Published: over 6 years ago

10.1111/j.1742-4658.2009.06893.x

Talin 2 is a large and complex gene encoding multiple transcripts and protein isoforms
Cited by: 58
Author(s): Emmanuel Debrand, Yasmine El Jai, Lorraine Spence, Neil Bate, Uta Praekelt, Catrin Pritchard, Susan J. Monkley, David R. Critchley
Software Mentions: 3
Published: over 16 years ago

10.1038/s41598-020-68696-7

Mutational analysis on predicting the impact of high-risk SNPs in human secretary phospholipase A2 receptor (PLA2R1)
Cited by: 6
Author(s): Zoya Khalid, Omar A. Almaghrabi
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-24477-x

Analysis of microRNA reveals cleistogamous and chasmogamous floret divergence in dimorphic plant
Cited by: 10
Author(s): Fan Wu, Daiyu Zhang, Blaise Pascal Muvunyi, Yan Qi, Yufei Zhang, Yan Zhang, Mingshu Cao, Yanrong Wang, Jiyu Zhang
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.00202

Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4
Cited by: 69
Author(s): Patrick Rast, Ines Glöckner, Christian Boedeker, Olga Jeske, Sandra Wiegand, Richard Reinhardt, Peter Schümann, Manfred Rohde, Stefan Spring, Frank Oliver Glöckner, Christian Jogler, Mareike Jogler
Software Mentions: 2
Published: over 8 years ago

10.3389/fcell.2021.657192

Loss of stra8 Increases Germ Cell Apoptosis but Is Still Compatible With Sperm Production in Atlantic Salmon (Salmo salar)
Cited by: 5
Author(s): Kai Ove Skaftnesmo, Diego Crespo, Lene Kleppe, Eva Andersson, Rolf B. Edvardsen, Birgitta Norberg, Per Gunnar Fjelldal, Tom Hansen, Rüdiger Schulz, Anna Wargelius
Software Mentions: 2
Published: over 4 years ago

10.1002/2211-5463.12212

Crystal structure of the essential biotin-dependent carboxylase AccA3 fromMycobacterium tuberculosis
Cited by: 2
Author(s): M.D. Bennett, Martin Högbom
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-74122-9

The influences of low protein diet on the intestinal microbiota of mice
Cited by: 18
Author(s): Hiroaki Masuoka, Wataru Suda, Eriko Tomitsuka, Chie Shindo, Lena Takayasu, Paul F. Horwood, Andrew R. Greenhill, Masahira Hattori, Masahiro Umezaki, Kazuhiro Hirayama
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-73140-x

Genome wide in-silico miRNA and target network prediction from stress responsive Horsegram (Macrotyloma uniflorum) accessions
Cited by: 10
Author(s): Jeshima Khan Yasin, Bharat Mishra, M. Arumugam Pillai, Nidhi Verma, Shabir Hussain Wani, Hosam O. Elansary, Diaa O. El-Ansary, Priyanka Pandey, Viswanathan Chinnusamy
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2016.00875

DGV: Dengue Genographic Viewer
Cited by: 16
Author(s): Akifumi Yamashita, Tetsuya Sakamoto, Tsuyoshi Sekizuka, Kengo Kato, Tomohiko Takasaki, Makoto Kuroda
Software Mentions: 2
Published: about 9 years ago

10.3389/fgene.2021.676751

Telomere Roles in Fungal Genome Evolution and Adaptation
Cited by: 11
Author(s): Mostafa Rahnama, Baohua Wang, Jane Dostart, О. С. Новікова, Daniel Yackzan, Andrew T. Yackzan, Haley Bruss, Maray Baker, Haven Jacob, Xiaofei Zhang, April Lamb, A. Keith Stewart, Melanie Heist, Joey Hoover, Patrick J. Calie, Li Chen, Jinze Liu, Mark L. Farman
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-018-21614-4

A multitarget approach to drug discovery inhibiting Mycobacterium tuberculosis PyrG and PanK
Cited by: 33
Author(s): Laurent R. Chiarelli, Giorgia Mori, Béatrice Silvia Orena, Marta Esposito, Thomas R. Lane, Ana Luisa de Jesus Lopes Ribeiro, Giulia Degiacomi, Júlia Zemanová, Sára Szádocka, Stanislav Huszár, Zuzana Palčeková, Marcello Manfredi, Fabio Gosetti, Joël Lelièvre, Lluís Ballell, Elena Kazakova, Vadim Makarov, Emílio Marengo, Katarı́na Mikušová, Stewart T. Cole, Giovanna Riccardi, Sean Ekins, Maria Rosalia Pasca
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-77110-1

Strategies to produce T-DNA free CRISPRed fruit trees via Agrobacterium tumefaciens stable gene transfer
Cited by: 35
Author(s): Lorenza Dalla Costa, Stefano Piazza, Valerio Pompili, Umberto Salvagnin, Alessandro Cestaro, Loredana Moffa, Lorenzo Vittani, C. Moser, Mickaël Malnoy
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2020.00557

Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasitica
Cited by: 5
Author(s): Franck Panabières, Corinne Rancurel, Martine Da Rocha, Marie-Line Kühn
Software Mentions: 2
Published: about 5 years ago

10.1002/2211-5463.12972

Recombinant transgelin‐like protein 1 fromMytilusshell induces formation of CaCO3polymorphic crystalsin vitro
Cited by: 1
Author(s): Yuting Jiang, Qi Sun, Meihua Fan, Jianyu He, Xiaolin Zhang, Hao Xu, Zhi Liao
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-017-10867-0

Integrated analysis of microRNA and mRNA expression profiles during the sex-differentiation sensitive period in oriental river prawn, Macrobrachium nipponense
Cited by: 18
Author(s): Shubo Jin, Hongtuo Fu, Shengming Sun, Sufei Jiang, Yiwei Xiong, Yongsheng Gong, Hui Qiao, Wenyi Zhang, Yan Wu
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-017-11170-8

RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats
Cited by: 59
Author(s): H Busra Cagirici, Burcu Alptekin, Hikmet Budak
Software Mentions: 2
Published: almost 8 years ago

10.3389/fgene.2021.620009

Comprehensive Pathogen Identification, Antibiotic Resistance, and Virulence Genes Prediction Directly From Simulated Blood Samples and Positive Blood Cultures by Nanopore Metagenomic Sequencing
Cited by: 9
Author(s): Mu Zhou, Yarong Wu, Timothy Kudinha, Peng Jia, Lei Wang, Yingchun Xu
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-91765-4

BING, a novel antimicrobial peptide isolated from Japanese medaka plasma, targets bacterial envelope stress response by suppressing cpxR expression
Cited by: 4
Author(s): Mingdong Dong, Shu Hin Kwok, Joseph L. Humble, Yimin Liang, Sze Wing Tang, Kin Hung Tang, Man Kit Tse, Josh Haipeng Lei, R. Rajkumar, Mohamad Koohi‐Moghadam, Doris Wai Ting Au, Hongyan Sun, Yun Wah Lam
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-91909-6

Independent duplications of the Golgi phosphoprotein 3 oncogene in birds
Cited by: 4
Author(s): Juan C. Opazo, Michael W. Vandewege, Javier Gutiérrez, Kattina Zavala, Luis Vargas‐Chacoff, Francisco J. Morera, Gonzalo A. Mardones
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2018.01591

Study the Features of 57 Confirmed CRISPR Loci in 38 Strains of Staphylococcus aureus
Cited by: 34
Author(s): Xihong Zhao, Zhixue Yu, Zhenbo Xu
Software Mentions: 2
Published: about 7 years ago

10.3389/fnbeh.2020.00160

Blast-Related Mild TBI Alters Anxiety-Like Behavior and Transcriptional Signatures in the Rat Amygdala
Cited by: 19
Author(s): Jennifer Blaze, Inbae Choi, Zhaoyu Wang, Michelle Umali, Natalia Mendelev, Anna E. Tschiffely, Stephen T. Ahlers, Gregory A. Elder, Yongchao Ge, Fatemeh Haghighi
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-018-19820-1

Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system
Cited by: 24
Author(s): Maria I. Pratas, Bruno Aguiar, Jorge Vieira, Vanessa Nunes, Vanessa Teixeira, Nuno A. Fonseca, Amy Iezzoni, Steve van Nocker, Cristina Vieira
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2016.00797

Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile “Ferrovum”
Cited by: 36
Author(s): Sophie R. Ullrich, Carolina González, Anja Poehlein, Judith S. Tischler, Rolf Daniel, Michael Schlömann, David S. Holmes, Martin Mühling
Software Mentions: 2
Published: about 9 years ago

10.12688/f1000research.10040.1

YeATSAM analysis of the walnut and chickpea transcriptome reveals key genes undetected by current annotation tools
Cited by: 8
Author(s): Sandeep Chakraborty, Pedro Manuel Martínez-García, Abhaya M. Dandekar
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.01982

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils
Cited by: 21
Author(s): Ngoc‐Loi Nguyen, Woon-Jong Yu, Joo-Han Gwak, So-Jeong Kim, Soo-Je Park, Craig W. Herbold, Jong-Geol Kim, Man‐Young Jung, Sung‐Keun Rhee
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-17132-4

Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota
Cited by: 63
Author(s): Ibrahim Hamad, Stéphane Ranque, Esam I. Azhar, Muhammad Yasir, Asif A. Jiman-Fatani, Hervé Tissot‐Dupont, Didier Raoult, Fadi Bittar
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.01098

Marine Group II Dominates Planktonic Archaea in Water Column of the Northeastern South China Sea
Cited by: 28
Author(s): Haodong Liu, Chuanlun L. Zhang, Chunyan Yang, Songze Chen, Zhiwei Cao, Zhiwei Zhang, Jie Tian
Software Mentions: 2
Published: about 8 years ago

10.3390/foods9091194

Determining the Authenticity of Shark Meat Products by DNA Sequencing
Cited by: 23
Author(s): Patrizia Marchetti, Anna Mottola, Roberta Piredda, Giuseppina Ciccarese, Angela Di Pinto
Software Mentions: 2
Published: almost 5 years ago

10.3389/fimmu.2018.00013

Differing House Finch Cytokine Expression Responses to Original and Evolved Isolates of Mycoplasma gallisepticum
Cited by: 20
Author(s): Michal Vinkler, Ariel E Leon, Laila T. Kirkpatrick, Rami A. Dalloul, Dana M. Hawley
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.00957

Efficacy of Phage Therapy in Controlling Rabbit Colibacillosis and Changes in Cecal Microbiota
Cited by: 19
Author(s): Jian Zhao, Yan Liu, Chen Xiao, Shaojie He, Huochun Yao, Guolian Bao
Software Mentions: 2
Published: about 8 years ago

10.4056/sigs.641096

Meeting Report: Metagenomics, Metadata and Meta-analysis; (M3) Special Interest Group at ISMB 2009
Cited by: 4
Author(s): Dawn Field, Iddo Friedberg, Peter J. Sterk, Renzo Kottmann, Frank Oliver Glöckner, Lynette Hirschman, George M Garrity, Guy Cochrane, John Wooley, Jack A. Gilbert
Software Mentions: 2
Published: over 15 years ago

10.1038/s41598-017-03433-1

Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
Cited by: 4
Author(s): Yandong Ren, Yanan Zhu, Qi Wang, Hui Xiang, Boyi Wang
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2018.00012

Identification and Expression Analysis of Wheat TaGF14 Genes
Cited by: 12
Author(s): Jun Guo, Shuang Dai, Haosheng Li, Aifeng Liu, Cheng Liu, Dungong Cheng, Xinyou Cao, Xiusheng Chu, Shengnan Zhai, Jianjun Li, Zhendong Zhao, Song Jiang
Software Mentions: 2
Published: over 7 years ago

10.1186/s13072-020-00340-0

A comprehensive overview of bull sperm-borne small non-coding RNAs and their diversity across breeds
Cited by: 29
Author(s): Eli Sellem, Sylvain Marthey, Andrea Rau, Luc Jouneau, A. Bonnet, Jean‐Philippe Perrier, Sébastien Fritz, Chrystelle Le Danvic, Mekki Boussaha, Hélène Kiefer, Hélène Jammes, Laurent Schibler
Software Mentions: 2
Published: over 5 years ago

10.1128/mSphere.00585-18

Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses
Cited by: 51
Author(s): Claude Kwe Yinda, Emiel Vanhulle, Nádia Conceição-Neto, Leen Beller, Ward Deboutte, Chengying Shi, Stephen Mbigha Ghogomu, Piet Maes, Marc Van Ranst, Jelle Matthijnssens
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-08256-8

Linkage mapping aided by de novo genome and transcriptome assembly in Portunus trituberculatus: applications in growth-related QTL and gene identification
Cited by: 22
Author(s): Jianjian Lv, Bingbo Gao, Ping Liu, Jian Li, Xianliang Meng
Software Mentions: 2
Published: almost 8 years ago

10.1007/s13199-014-0291-1

The diversity of endophytic fungi in the above-ground tissue of two Lycopodium species in Poland
Cited by: 23
Author(s): Julia Pawłowska, Mateusz Wilk, Anna Śliwińska–Wyrzychowska, Monika Mętrak, Marta Wrzosek
Software Mentions: 2
Published: about 11 years ago

10.1002/fsn3.2153

Spectroscopic and in silico investigation of the interaction between GH1 β‐glucosidase and ginsenoside Rb 1
Cited by: 8
Author(s): Shuning Zhong, Yan Mi, Haifeng Zou, Ping Zhao, Haiqing Ye, Tiehua Zhang, Can Zhao
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2018.01925

Characterization of ML-005, a Novel Metaproteomics-Derived Esterase
Cited by: 6
Author(s): Premankur Sukul, Natalie Lupilov, Lars I. Leichert
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2015.00597

Anaerobic digestion of the microalga Spirulina at extreme alkaline conditions: biogas production, metagenome, and metatranscriptome
Cited by: 53
Author(s): Vímac Nolla-Ardèvol, Marc Strous, Halina E. Tegetmeyer
Software Mentions: 2
Published: about 10 years ago

10.1002/fsn3.2468

Gastrointestinal transit tolerance, cell surface hydrophobicity, and functional attributes of Lactobacillus Acidophilus strains isolated from Indigenous Dahi
Cited by: 12
Author(s): Wajiha Farid, Tariq Masud, Aamir Sohail, Nazir Ahmad, Syed Muhammad Saqlan Naqvi, Sipper Khan, Amjad Ali, S. A. Khalifa, Abid Hussain, Sartaj Ali, Maryum Saghir, Azhari Siddeeg, Muhammad Faisal Manzoor
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-019-48824-8

The Single-molecule long-read sequencing of Scylla paramamosain
Cited by: 14
Author(s): Haifu Wan, Xiaoyun Jia, Pengfei Zou, Ziping Zhang, Yilei Wang
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-49550-x

ALKBH overexpression in head and neck cancer: potential target for novel anticancer therapy
Cited by: 41
Author(s): Tomaš Pilžys, Michał Marcinkowski, Wojciech Kukwa, Damian Garbicz, Małgorzata Dylewska, Karolina Ferenc, Adam Mieczkowski, Andrzej Kukwa, Ewa Migacz, Dominika Wołosz, Damian Mielecki, Arne Klungland, Jan Piwowarski, Jarosław Poznański, Elżbieta Grzesiuk
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.597686

Wenzhouxiangella Strain AB-CW3, a Proteolytic Bacterium From Hypersaline Soda Lakes That Preys on Cells of Gram-Positive Bacteria
Cited by: 12
Author(s): Dimitry Y. Sorokin, Damon Mosier, Jackie Zorz, Xiaoli Dong, Marc Strous
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-51190-0

Transcriptome-Wide Identification and Characterization of Circular RNAs in Leaves of Chinese Cabbage (Brassica rapa L. ssp. pekinensis) in Response to Calcium Deficiency-Induced Tip-burn
Cited by: 24
Author(s): Wuhong Wang, Jinglei Wang, Qingzhen Wei, Biyuan Li, Xinmin Zhong, Tianhua Hu, Hongbo Hu, Chonglai Bao
Software Mentions: 2
Published: almost 6 years ago

10.1002/2211-5463.12022

Analysis of nucleotide diphosphate sugar dehydrogenases reveals family and group‐specific relationships
Cited by: 4
Author(s): Nicholas Freas, Peter W. Newton, John Perozich
Software Mentions: 2
Published: over 9 years ago

10.1038/s41396-019-0554-1

Groundwater cable bacteria conserve energy by sulfur disproportionation
Cited by: 50
Author(s): Hubert Müller, Sviatlana Marozava, Alexander J. Probst, Rainer U. Meckenstock
Software Mentions: 2
Published: over 5 years ago

10.1111/eva.13239

Natural CO2 seeps reveal adaptive potential to ocean acidification in fish
Cited by: 8
Author(s): Natalia Petit-Marty, Ivan Nagelkerken, Sean D. Connell, Celia Schunter
Software Mentions: 2
Published: about 4 years ago

10.3390/toxins12010041

Aberrant Expressional Profiling of Known MicroRNAs in the Liver of Silver Carp (Hypophthalmichthys molitrix) Following Microcystin-LR Exposure Based on samllRNA Sequencing
Cited by: 6
Author(s): Yiyi Feng, Xi Chen, Jing Ma, Bangjun Zhang, Xiaoyü Li
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-58163-8

Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes
Cited by: 46
Author(s): Chandni Talwar, Shekhar Nagar, Roshan Kumar, Joy Scaria, Rup Lal, Ram Krishan Negi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-61208-7

Evolutionary and Molecular Characterization of liver-enriched gene 1
Cited by: 3
Author(s): Yanna Dang, Jinyang Wang, Chen Liu, Kun Zhang, Jinrong Peng, Jin He
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-25044-0

Comparative analyses and structural insights of the novel cytochrome P450 fusion protein family CYP5619 in Oomycetes
Cited by: 4
Author(s): Hans Denis Bamal, Wanping Chen, Samson Sitheni Mashele, David R. Nelson, Abidemi Paul Kappo, Rebamang A. Mosa, Jae‐Hyuk Yu, Jack A. Tuszyński, Khajamohiddin Syed
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-63018-3

Pre-harvest climate and post-harvest acclimation to cold prevent from superficial scald development in Granny Smith apples
Cited by: 9
Author(s): Mathieu Marc, Maryline Cournol, Sylvain Hanteville, Anne-Sophie Poisson, Marie-Charlotte Guillou, Sandra Pelletier, François Laurens, C. Tessier, Claude Coureau, Jean-Pierre Renou, Mickaël Delaire, Mathilde Orsel
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-63187-1

Genome-wide identification of Arabidopsis long noncoding RNAs in response to the blue light
Cited by: 22
Author(s): Zhenfei Sun, Kai Huang, Zujing Han, Pan Wang, Yuda Fang
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2020.00649

Identification of a TLR-Induced Four-lncRNA Signature as a Novel Prognostic Biomarker in Esophageal Carcinoma
Cited by: 14
Author(s): Jing Liu, Han Li, Yanjie Chu, Ruiling Xu, Dekai Zhang, Xinhong Wang
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.590475

Identification and Expression Analysis of Long Non-coding RNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans Infection
Cited by: 12
Author(s): Xinyi Zhang, Tao Zhou, Baohua Chen, Haili Bai, Yulin Bai, Ji Zhao, Fei Pu, Yidi Wu, Chen Lin, You Shi, Qiaozhen Ke, Weiqiang Zheng, Jia Chen, Peng Xu
Software Mentions: 2
Published: over 4 years ago

10.1111/1574-6941.12084

Microbial community potentially responsible for acid and metal release from an Ostrobothnian acid sulfate soil
Cited by: 30
Author(s): Xiaofen Wu, Zhen Lim Wong, Pekka Stén, Sten Engblom, Peter Österholm, Mark Dopson
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-017-00150-7

Reciprocal regulation of γ-globin expression by exo-miRNAs: Relevance to γ-globin silencing in β-thalassemia major
Cited by: 14
Author(s): Kuo‐Ting Sun, Yu-Nan Huang, Kalaiselvi Palanisamy, Shih‐Sheng Chang, I‐Kuan Wang, Kang‐Hsi Wu, Ping Chen, Ching‐Tien Peng, Chi Yuan Li
Software Mentions: 2
Published: over 8 years ago

Projects: pypi: blast

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Papers Mentioning blast 1,819