pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/1471-2350-7-18

Breakpoint Associated with a novel 2.3 Mb deletion in the VCFS region of 22q11 and the role of Alu (SINE) in recurring microdeletions
Cited by: 24
Author(s): Raihan K. Uddin, Yang Zhang, Victoria Mok Siu, Yao Shan Fan, Richard O’Reilly, Jay Rao, Shiva M. Singh
Software Mentions: 3
Published: over 20 years ago

10.1186/s12864-018-4675-0

Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction
Cited by: 31
Author(s): Susanne Bornelöv, Eyal Seroussi, Sara Yosefi, Sharon Benjamini, Shoval Miyara, M. Ruzal, Manfred Grabherr, Nima Rafati, Anna Maja Molin, Ken Pendavis, Shane C. Burgess, Leif Andersson, Miriam Friedman‐Einat
Software Mentions: 3
Published: over 8 years ago

10.3390/microorganisms9051006

Ornithobacterium rhinotracheale: MALDI-TOF MS and Whole Genome Sequencing Confirm That Serotypes K, L and M Deviate from Well-Known Reference Strains and Numerous Field Isolates
Cited by: 6
Author(s): Merima Alispahic, Lukas Endler, Michael Heß, Claudia Heß
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2105-8-307

Protein structural similarity search by Ramachandran codes
Cited by: 45
Author(s): Wei-Cheng Lo, Po-Jung Huang, Chih Hung Chang, Ping Lyu
Software Mentions: 3
Published: about 19 years ago

10.1186/1471-2164-13-31

Sequencing and comparative genomic analysis of 1227 Felis catus cDNA sequences enriched for developmental, clinical and nutritional phenotypes
Cited by: 8
Author(s): Kristopher J. L. Irizarry, S. B. Malladi, Xiangming Gao, Katherine Mitsouras, Lynda Melendez, Patricia A Burris, Jeffrey A. Brockman, Samer Al-Murrani
Software Mentions: 3
Published: over 14 years ago

10.1099/mgen.0.000142

Vibrio cholerae genomic diversity within and between patients
Cited by: 24
Author(s): Inès Levade, Yves Terrat, Jean-Baptiste Leducq, Ana A. Weil, Leslie M. Mayo-Smith, Fahima Chowdhury, Ashraful Islam Khan, Jacques Boncy, Josiane Buteau, Louise C. Ivers, Edward T. Ryan, Richelle C. Charles, Stephen B. Calderwood, Firdausi Qadri, Jason B. Harris, Regina C. LaRocque, B. Jesse Shapiro
Software Mentions: 3
Published: almost 9 years ago

10.3390/microorganisms7100444

A Diverse Repertoire of Exopolysaccharide Biosynthesis Gene Clusters in Lactobacillus Revealed by Comparative Analysis in 106 Sequenced Genomes
Cited by: 40
Author(s): Dipti Deo, Dimple Davray, Ram Kulkarni
Software Mentions: 3
Published: about 7 years ago

10.1099/mic.0.000861

Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100
Cited by: 11
Author(s): Laura E. Williams, Nicole Cullen, Joseph A. DeGiorgis, Karla J Martinez, Justina Mellone, Molly Oser, Jing Wang, Ying Zhang
Software Mentions: 3
Published: almost 7 years ago

10.1099/mgen.0.000231

SynerClust: a highly scalable, synteny-aware orthologue clustering tool
Cited by: 12
Author(s): C Georgescu, Abigail L. Manson, Alexander D. Griggs, Christopher A. Desjardins, Alejandro Pironti, Ilan Wapinski, Thomas Abeel, Brian J. Haas, Ashlee M. Earl
Software Mentions: 3
Published: almost 8 years ago

10.1128/mSphere.00305-16

Coordinate Regulation of Antimycin and Candicidin Biosynthesis
Cited by: 34
Author(s): Thomas C McLean, Paul A. Hoskisson, Ryan F. Seipke
Software Mentions: 3
Published: almost 10 years ago

10.1128/mSystems.00187-18

New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract
Cited by: 302
Author(s): Isabel F. Escapa, Tsute Chen, Yanmei Huang, Prasad Gajare, Floyd E. Dewhirst, Katherine P. Lemon
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-015-2142-8

Gene expression analysis at the onset of sex differentiation in turbot (Scophthalmus maximus)
Cited by: 35
Author(s): Diego Robledo, Laia Ribas, Rosa Cal, Laura Sánchez, Francesc Piferrer, Paulino Martı́nez, Ana Viñas
Software Mentions: 3
Published: almost 11 years ago

10.3390/microorganisms7110551

Meta-16S rRNA Gene Phylogenetic Reconstruction Reveals the Astonishing Diversity of Cosmopolitan Myxobacteria
Cited by: 10
Author(s): Yang Liu, Qing Yao, Honghui Zhu
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-015-1870-0

Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)
Cited by: 8
Author(s): Joseph Heras, Kelly McClintock, Shinichi Sunagawa, Andres Aguilar
Software Mentions: 3
Published: about 11 years ago

10.1099/mgen.0.000347

Comparison of core-genome MLST, coreSNP and PFGE methods for Klebsiella pneumoniae cluster analysis
Cited by: 29
Author(s): Floriana Gona, Francesco Comandatore, Simone Battaglia, Aurora Piazza, Alberto Trovato, Giovanni Lorenzin, Paola Cichero, Anna Biancardi, Paola Nizzero, Matteo Moro, Daniela María Cirillo
Software Mentions: 3
Published: over 6 years ago

10.18632/oncotarget.27406

Characterization of unique PMEPA1 gene splice variants (isoforms d and e) from RNA Seq profiling provides novel insights into prognostic evaluation of prostate cancer
Cited by: 7
Author(s): Shashwat Sharad, Allissa Dillman, Zsófia Sztupinszki, Zoltán Szállási, Inger L. Rosner, Jennifer Cullen, Shiv Srivastava, Alagarsamy Srinivasan, Hua Li
Software Mentions: 3
Published: over 6 years ago

10.1155/2018/5692840

Noncoding RNA Transcripts during Differentiation of Induced Pluripotent Stem Cells into Hepatocytes
Cited by: 5
Author(s): Aniela Skrzypczyk, Stephanie Kehr, Ilona Krystel, Stephan H. Bernhart, Shibashish Giri, Augustinus Bader, Peter F. Stadler
Software Mentions: 3
Published: about 8 years ago

10.1099/mgen.0.000352

Genomic surveillance of Escherichia coli ST131 identifies local expansion and serial replacement of subclones
Cited by: 30
Author(s): Catherine Ludden, Arun Gonzales Decano, Dorota Jamrozy, Derek Pickard, Dearbháile Morris, Julian Parkhill, Sharon J. Peacock, Martin Cormican, Tim Downing
Software Mentions: 3
Published: over 6 years ago

10.3390/toxins10120503

Discovery of Novel Conotoxin Candidates Using Machine Learning
Cited by: 18
Author(s): Qing Li, Maren Watkins, Samuel D. Robinson, Helena Safavi-Hemami, Mark Yandell
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2164-11-592

Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray
Cited by: 55
Author(s): Stéphane Fénart, Yves-Placide Assoumou Ndong, Jorge Duarte, Nathalie Rivière, Jeroen Wilmer, Olivier Van Wuytswinkel, Anca Lucau, Emmanuelle Cariou, Godfrey Neutelings, Laurent Gutierrez, Brigitte Chabbert, Xavier Guillot, Reynald Tavernier, Simon Hawkins, Brigitte Thomasset
Software Mentions: 3
Published: almost 16 years ago

10.1038/tp.2016.181

Impaired GABA synthesis, uptake and release are associated with depression-like behaviors induced by chronic mild stress
Cited by: 110
Author(s): Kewei Ma, Aidong Xu, Sheng Cui, Sun Mr, Xue Yc, Wang Jh
Software Mentions: 3
Published: about 10 years ago

10.1038/s41598-021-82201-8

A metabolomic approach to target antimalarial metabolites in the Artemisia annua fungal endophytes
Cited by: 24
Author(s): Hani A. Alhadrami, Ahmed M. Sayed, Ahmed O. El-Gendy, Yara I. Shamikh, Yasser Gaber, Walid Bakeer, Noheir H. Sheirf, Eman Zekry Attia, Gehan M. Shaban, Basma Ali Khalifa, Che Julius Ngwa, Gabriele Pradel, Mostafa E. Rateb, Hossam M. Hassan, Dalal Hussien M. Alkhalifah, Usama Ramadan Abdelmohsen, Wael N. Hozzein
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2164-13-517

Genome-wide metabolic (re-) annotation of Kluyveromyces lactis
Cited by: 16
Author(s): Óscar Dias, Andreas Gombert, Eugénio C. Ferreira, Isabel Rocha
Software Mentions: 3
Published: about 14 years ago

10.1155/2016/6261490

Validation of Housekeeping Genes to Study Human Gingival Stem Cells and TheirIn VitroOsteogenic Differentiation Using Real-Time RT-qPCR
Cited by: 14
Author(s): Ihsène Taïhi, Ali Nassif, Tsouria Berbar, Juliane Isaac, Ariane Berdal, Bruno Gogly, Benjamin Fournier
Software Mentions: 3
Published: almost 11 years ago

10.1186/1471-2105-10-331

ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery
Cited by: 29
Author(s): Frank M. You, Naxin Huo, Yong Gu, Gerard R. Lazo, Jan Dvořák, Olin D. Anderson
Software Mentions: 3
Published: about 17 years ago

10.1099/mgen.0.000144

Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence
Cited by: 75
Author(s): Roman Thibeaux, Gregorio Iraola, Ignacio Ferrés, Emilie Bierque, Dominique Girault, Marie‐Estelle Soupé‐Gilbert, Mathieu Picardeau, Cyrille Goarant
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-019-55896-z

System OMICs analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster
Cited by: 7
Author(s): Julia Bespyatykh, Egor Shitikov, Andrei Guliaev, Alexander Smolyakov, Ksenia M. Klimina, Vladimir A. Veselovsky, М В Малахова, Georgij Arapidi, Marine Dogonadze, Olga Manicheva, Dmitry Bespiatykh, Igor Mokrousov, Viacheslav Zhuravlev, Elena N. Ilina, Vadim M. Govorun
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-65724-4

Simultaneous identification of animal-derived components in meats using high-throughput sequencing in combination with a custom-built mitochondrial genome database
Cited by: 6
Author(s): Yinan Zhang, Qinfeng Qu, RAO Mingzhen, Zhang Nana, Yu Zhao, Fei Tao
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-42686-w

Enhanced early-life nutrition upregulates cholesterol biosynthetic gene expression and Sertoli cell maturation in testes of pre-pubertal Holstein bulls
Cited by: 12
Author(s): Chinju Johnson, Alysha Dance, Igor Kovalchuk, John P. Kastelic, Jacob C. Thundathil
Software Mentions: 3
Published: over 7 years ago

10.1099/mgen.0.000180

Bordetella pertussis population dynamics and phylogeny in Japan after adoption of acellular pertussis vaccines
Cited by: 18
Author(s): Aldert Zomer, Nao Otsuka, Yukihiro Hiramatsu, Kazunari Kamachi, Naoko Nishimura, Takao Ozaki, Jan Poolman, Jeroen Geurtsen
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2164-12-99

De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum
Cited by: 106
Author(s): Joshua P. Der, Michael S. Barker, Norman J. Wickett, Claude W. dePamphilis, Paul G. Wolf
Software Mentions: 3
Published: over 15 years ago

10.1186/1471-2164-8-428

Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison
Cited by: 226
Author(s): S. Pilati, Michele Perazzolli, A. Malossini, Alessandro Cestaro, L. Dematté, Paolo Fontana, A. Dal Rì, Roberto Viola, Riccardo Velasco, C. Moser
Software Mentions: 3
Published: almost 19 years ago

10.3390/genes12020254

Paracellular and Transcellular Leukocytes Diapedesis Are Divergent but Interconnected Evolutionary Events
Cited by: 20
Author(s): Michel‐Edwar Mickael, Norwin Kubick, Pavel Klimovich, Patrick Henckell Flournoy, Irmina Bieńkowska, Mariusz Sacharczuk
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-017-05222-2

Impacts of Early Life Stress on the Methylome and Transcriptome of Atlantic Salmon
Cited by: 41
Author(s): Hooman K. Moghadam, Hanne Johnsen, Nick Robinson, Øivind Andersen, Even H. Jørgensen, Hanne Johnsen, Vegar J. Bæhr, Helge Tveiten
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-019-41189-y

Identifying High Confidence microRNAs in the Developing Seeds of Jatropha curcas
Cited by: 11
Author(s): Mo Yang, Hongyu Lu, Feiqun Xue, Lanqing Ma
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2105-15-61

CDSbank: taxonomy-aware extraction, selection, renaming and formatting of protein-coding DNA or amino acid sequences
Cited by: 2
Author(s): Bart Hazes
Software Mentions: 3
Published: over 12 years ago

10.1186/1471-2164-15-853

Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses
Cited by: 109
Author(s): Zarqa Nawaz, Kaleem Ullah Kakar, Mumtaz Ali Saand, Qingyao Shu
Software Mentions: 3
Published: about 12 years ago

10.1186/1471-2164-12-104

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)
Cited by: 176
Author(s): José Blanca, Joaquı́n Cañizares, Cristina Roig, Peio Ziarsolo, F. Nuez, Belén Picó
Software Mentions: 3
Published: over 15 years ago

10.1128/AEM.02885-19

Nutrient Level Determines Biofilm Characteristics and Subsequent Impact on Microbial Corrosion and Biocide Effectiveness
Cited by: 48
Author(s): Silvia J. Salgar-Chaparro, Kateřina Lepková, Thunyaluk Pojtanabuntoeng, Adam Darwin, Laura L. Machuca
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-015-0833-4

GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas
Cited by: 33
Author(s): Guillaume Rivière, Christophe Klopp, Ibouniyamine Nabihoudine, Arnaud Huvet, Pierre Boudry, Pascal Favrel
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pgen.1000732

Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome
Cited by: 332
Author(s): Regina S. Baucom, James C. Estill, Cristian Chaparro, Naadira C. Upshaw, Ansuya Jogi, Jean-Marc Deragon, Richard P. Westerman, Phillip SanMiguel, Jeffrey L. Bennetzen
Software Mentions: 3
Published: almost 17 years ago

10.1099/mgen.0.000188

A complete high-quality MinION nanopore assembly of an extensively drug-resistant Mycobacterium tuberculosis Beijing lineage strain identifies novel variation in repetitive PE/PPE gene regions
Cited by: 32
Author(s): Arnold Bainomugisa, Tânia Duarte, Evelyn Lavu, Sushil Pandey, Chris Coulter, Ben J. Marais, Lachlan Coin
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0145053

Synergistic Interactions of Eugenol-tosylate and Its Congeners with Fluconazole against Candida albicans
Cited by: 57
Author(s): Aijaz Ahmad, Mohmmad Younus Wani, Amber Khan, Nikhat Manzoor, Julitha Molepo
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-019-5545-0

An insight into the sialotranscriptome and virome of Amazonian anophelines
Cited by: 21
Author(s): Vera Margarete Scarpassa, Humberto Julio Debat, Ronildo Baiatone Alencar, José Ferreira Saraiva, Eric Calvo, Bruno Arcà, José M. C. Ribeiro
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-018-2452-3

PCRdrive: the largest qPCR assay archive to date and endless potential for lab workflow revitalization
Cited by: 0
Author(s): Florian Bürger, Michele Angioni, Gianluca Russo, Martina Schad, Jim Kallarackal
Software Mentions: 2
Published: almost 8 years ago

10.1534/g3.120.401205

Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (Betta splendens) in a University Master’s Course
Cited by: 11
Author(s): Stefan Prost, Malte Petersen, Martin Grethlein, Sarah Joy Hahn, Nina Kuschik-Maczollek, Martyna Ewa Olesiuk, Jan-Olaf Reschke, Tamara Elke Schmey, Caroline Zimmer, Deepak Kumar Gupta, Tilman Schell, Raphael T. F. Coimbra, Jordi de Raad, Fritjof Lammers, Sven Winter, Axel Janke
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-11-384

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
Cited by: 167
Author(s): Sheng Guo, Yi Zheng, Je‐Gun Joung, Shiqiang Liu, Zhonghua Zhang, Oswald Crasta, Bruno W. S. Sobral, Yong Xu, Sanwen Huang, Zhangjun Fei
Software Mentions: 2
Published: over 16 years ago

10.1534/g3.116.038448

Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi
Cited by: 21
Author(s): Pierre‐Yves Dupont, Murray P. Cox
Software Mentions: 2
Published: over 9 years ago

10.1099/mgen.0.000507

Cas9-targeted nanopore sequencing reveals epigenetic heterogeneity after de novo assembly of native full-length hepatitis B virus genomes
Cited by: 7
Author(s): Chloe D. Goldsmith, Damien Cohen, A. Dubois, María del Carmen Jiménez Martínez, Kilian Petitjean, Anne Corlu, Barbara Testoni, Héctor Hernandez-Vargas, Isabelle Chemin
Software Mentions: 2
Published: over 5 years ago

10.1099/mgen.0.000497

Intraspecies plasmid and genomic variation of Mycobacterium kubicae revealed by the complete genome sequences of two clinical isolates
Cited by: 7
Author(s): Jo Hendrix, L. Elaine Epperson, David Durbin, Jennifer R. Honda, Michael Strong
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2164-15-1080

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications
Cited by: 31
Author(s): Stuart J. Lucas, Bala Anı Akpınar, Hana Šimková, Marie Kubaláková, Jaroslav Doležel, Hikmet Budak
Software Mentions: 2
Published: almost 12 years ago

10.1534/g3.117.043083

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size
Cited by: 20
Author(s): David L. Oldeschulte, Yvette A. Halley, Miranda Wilson, Eric K. Bhattarai, Wesley Brashear, Joshua A. Hill, Richard P. Metz, Charles D. Johnson, Dale Rollins, Markus J. Peterson, Derek M. Bickhart, Jared E. Decker, John F. Sewell, Christopher M. Seabury
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2105-13-334

Protein interface classification by evolutionary analysis
Cited by: 126
Author(s): José M. Duarte, Adam Srebniak, Martin A. Schärer, Guido Capitani
Software Mentions: 2
Published: almost 14 years ago

10.3389/fpls.2015.01086

De novo Transcriptome Assembly of a Chinese Locoweed (Oxytropis ochrocephala) Species Provides Insights into Genes Associated with Drought, Salinity, and Cold Tolerance
Cited by: 18
Author(s): Wei He, Zhuang Hu, Yànpíng Fù, Linwei Guo, Bin Guo, Lizhu Guo, Xiuhong Zhang, Yahui Wei
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12864-014-1205-6

Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes
Cited by: 39
Author(s): Jan M. Meyer, Christian Rödelsperger, Karsten Eichholz, Urban Tillmann, Allan Cembella, Angela McGaughran, Uwe John
Software Mentions: 2
Published: over 11 years ago

10.1186/s12983-017-0225-x

Comparative genomics analyses of alpha-keratins reveal insights into evolutionary adaptation of marine mammals
Cited by: 17
Author(s): Xiaohui Sun, Zhang Zepeng, Yingying Sun, Jing Li, Shixia Xu, Guang Yang
Software Mentions: 2
Published: about 9 years ago

10.1534/g3.115.018382

Identification of Reproduction-Related Gene Polymorphisms Using Whole Transcriptome Sequencing in the Large White Pig Population
Cited by: 30
Author(s): Daniel Fischer, Asta Laiho, Attila Gyenesei
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2020.00156

A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping
Cited by: 6
Author(s): Daniela Holtgräwe, Thomas Rosleff Soerensen, Ludger Hausmann, Boas Pucker, Prisca Viehöver, Reinhard Töpfer, Bernd Weißhaar
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2016.02058

A Comprehensive Prescription for Plant miRNA Identification
Cited by: 38
Author(s): Burcu Alptekin, Bala Anı Akpınar, Hikmet Budak
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.01519

Identification and Expression Profile of CYPome in Perennial Ryegrass and Tall Fescue in Response to Temperature Stress
Cited by: 29
Author(s): Tao Xiang, Mingxiu Wang, Yan Dai, Yan Wang, Yan-Fen Fan, Ping Mao, Xinrong Ma
Software Mentions: 2
Published: almost 9 years ago

10.1099/mgen.0.000166

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
Cited by: 162
Author(s): Mickael Silva, Miguel P. Machado, Diogo N. Silva, Mirko Rossi, Jacob Moran-Gilad, Susana Santos, Mário Ramirez, João André Carriço
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-15-685

Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing
Cited by: 18
Author(s): Yu Liu, Mehmet Koyutürk, Sean Maxwell, Min Xiang, Marty L Veigl, Richard S. Cooper, Bamidele O. Tayo, Li Li, Thomas LaFramboise, Benlian Wang, Xiaofeng Zhu, Mark R. Chance
Software Mentions: 2
Published: almost 13 years ago

10.3389/fpls.2020.570915

Expression of LhFT1, the Flowering Inducer of Asiatic Hybrid Lily, in the Bulb Scales
Cited by: 5
Author(s): Kana Kurokawa, Junya Kobayashi, Keiichirou Nemoto, Akira Nozawa, Tatsuya Sawasaki, Takashi Nakatsuka, Masumi Yamagishi
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2016.00488

Genetic Adaptation of Giant Lobelias (Lobelia aberdarica and Lobelia telekii) to Different Altitudes in East African Mountains
Cited by: 8
Author(s): Shu Ying Zhao, Ling Yun Chen, John K. Muchuku, Guang Hu, Qing Feng Wang
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-12-164

Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
Cited by: 130
Author(s): Brian R. Johnson, Neil D. Tsutsui
Software Mentions: 2
Published: over 15 years ago

10.3389/fpls.2021.714305

Insights Into the Molecular Evolution of AT-Hook Motif Nuclear Localization Genes in Brassica napus
Cited by: 7
Author(s): Weimeng Zhang, Dongdong Fang, Xiuzhu Cheng, Jun Cao, Xiao‐Li Tan
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2021.642631

Epigenetic Variability Among Saffron Crocus (Crocus sativus L.) Accessions Characterized by Different Phenotypes
Cited by: 13
Author(s): Matteo Busconi, Elisabeth Wischnitzki, Marcello Del Corvo, Licia Colli, Giovanna Soffritti, Lorenzo Stagnati, Silvia Fluch, Eva Maria Sehr, Marcelino de los Mozos Pascual, José Antonio Fernández
Software Mentions: 2
Published: over 5 years ago

10.1099/mgen.0.000036

Recombination-mediated remodelling of host–pathogen interactions during Staphylococcus aureus niche adaptation
Cited by: 31
Author(s): Laura E. Spoor, Emily J. Richardson, Amy C. Richards, Gillian J. Wilson, Chriselle Mendonca, Ravi Gupta, Paul R. McAdam, Stephen W. Tuffs, Nikki S. Black, James P. O’Gara, Chia Y. Lee, Jukka Corander, J. Ross Fitzgerald
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2164-13-645

Limitations and possibilities of low cell number ChIP-seq
Cited by: 81
Author(s): Gregor D. Gilfillan, Timothy R. Hughes, Ying Sheng, Hanne Sagsveen Hjorthaug, Tobias Straub, Kristina Gervin, Jennifer R. Harris, Dag E. Undlien, Robert Lyle
Software Mentions: 2
Published: almost 15 years ago

10.3389/fpls.2021.625520

De novo Transcriptome Assembly and Comparative Analysis Highlight the Primary Mechanism Regulating the Response to Selenium Stimuli in Oats (Avena sativa L.)
Cited by: 2
Author(s): Tao Liu, Xiaoting Liu, Rangrang Zhou, Hong Chen, Huaigang Zhang, Bo Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2014.00356

Unravelling the proteomic profile of rice meiocytes during early meiosis
Cited by: 22
Author(s): Melania Collado-Romero, Enriqueta Alós, Pilar Prieto
Software Mentions: 2
Published: about 12 years ago

10.3389/fpls.2021.712254

Identification and Characterization of Secondary Wall-Associated NAC Genes and Their Involvement in Hormonal Responses in Tobacco (Nicotiana tabacum)
Cited by: 5
Author(s): Na Xu, Lin Meng, Lin Song, Xiaoxu Li, Shanshan Du, Fengqin Hu, Yuanda Lv, Wenjing Song
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2017.01653

Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly
Cited by: 18
Author(s): H Busra Cagirici, Sezgi Biyiklioglu, Hikmet Budak
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2017.00594

De novo Sequencing and Transcriptome Analysis Reveal Key Genes Regulating Steroid Metabolism in Leaves, Roots, Adventitious Roots and Calli of Periploca sepium Bunge
Cited by: 7
Author(s): Jian Zhang, Xinglin Li, Fuping Lu, Shan-Ying Wang, Yunhe An, Xiaoxing Su, Xiankuan Li, Lin Ma, Han Guang-jian
Software Mentions: 2
Published: over 9 years ago

10.3390/antiox10030378

Nitrosative Redox Homeostasis and Antioxidant Response Defense in Disused Vastus lateralis Muscle in Long-Term Bedrest (Toulouse Cocktail Study)
Cited by: 7
Author(s): Dieter Blottner, Daniele Capitanio, Gabor Trautmann, Sandra Furlan, Guido Gambara, Manuela Moriggi, Katharina Block, Pietro Barbacini, Enrica Torretta, Guillaume Py, Angèle Chopard, Imre Vida, Pompeo Volpe, Cecilia Gelfi, Michele Salanova
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2016.00096

Characterization of a Digestive α-Amylase in the Midgut of Pieris brassicae L. (Lepidoptera: Pieridae)
Cited by: 12
Author(s): Ali Sharifloo, Arash Zibaee, Jalal Jalali Sendi, Khalil Talebi Jahroumi
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2016.01374

Genomic Dissection and Expression Profiling Revealed Functional Divergence in Triticum aestivum Leucine Rich Repeat Receptor Like Kinases (TaLRRKs)
Cited by: 56
Author(s): . Shumayla, Shailesh Sharma, Rohit Kumar, Venugopal Mendu, Kashmir Singh, Santosh Kumar Upadhyay
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2018.00423

Halotolerant Exiguobacterium profundum PHM11 Tolerate Salinity by Accumulating L-Proline and Fine-Tuning Gene Expression Profiles of Related Metabolic Pathways
Cited by: 21
Author(s): Vikas Patel, R. P. Srivastava, Anjney Sharma, Anchal Srivastava, Surinder Singh, Alok Kumar Srivastava, Prem Lal Kashyap, Hillol Chakdar, Kurinji Pandiyan, Alok Kalra, Anil Kumar Saxena
Software Mentions: 2
Published: over 8 years ago

10.1111/1751-7915.12145

Colonization by endophytic <scp>O</scp>chrobactrum anthropi <scp>M</scp>n1 promotes growth of <scp>J</scp>erusalem artichoke
Cited by: 22
Author(s): Xianmin Meng, Dekai Yan, Xiaohua Long, Changhai Wang, Zhaopu Liu, Zed Rengel
Software Mentions: 2
Published: about 12 years ago

10.1111/1751-7915.12316

A novel bacteriophage cocktail reduces and dispersesPseudomonas aeruginosabiofilms under static and flow conditions
Cited by: 75
Author(s): Diana R. Alves, Patricia Pérez Esteban, Witold Kot, Jessica Bean, Tom Arnot, Lars Hestbjerg Hansen, Mark C. Enright, A. Toby A. Jenkins
Software Mentions: 2
Published: about 11 years ago

10.3389/fmicb.2015.01044

Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function
Cited by: 22
Author(s): William P. Inskeep, Zackary J. Jay, Richard E. Macur, Scott Clingenpeel, Aaron Tenney, David Lovalvo, Jacob P. Beam, Mark A. Kozubal, Wayne C. Shanks, Lisa A. Morgan, Jinjun Kan, Yuri A. Gorby, Shibu Yooseph, Kenneth H. Nealson
Software Mentions: 2
Published: almost 11 years ago

10.3389/fneur.2018.00465

Environmental Enrichment Upregulates Striatal Synaptic Vesicle-Associated Proteins and Improves Motor Function
Cited by: 6
Author(s): Suk Young Song, Minji Chae, Ji Hea Yu, Min Young Lee, Soonil Pyo, Yeseul Shin, Ahreum Baek, Jung Won Park, Eun Sook Park, Ja Young Choi, Sung Rae Cho
Software Mentions: 2
Published: over 8 years ago

10.1111/1751-7915.13545

Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates
Cited by: 19
Author(s): Wladimir Mardones, Carlos A. Villarroel, Kristoffer Krogerus, Sebastián M. Tapia, Kamila Urbina, Christian I. Oporto, Samuel O’Donnell, Romain Minebois, Roberto F. Nespolo, Gilles Fischer, Amparo Querol, Brian Gibson, Francisco A. Cubillos
Software Mentions: 2
Published: over 6 years ago

10.1111/1751-7915.12116

Activation and identification of five clusters for secondary metabolites in <scp>S</scp>treptomyces albus <scp>J</scp>1074
Cited by: 175
Author(s): Carlos Olano, Ignacio García, Aránzazu González, Martín González Rodríguez, Daniel Rozas, Jerónimo Rubio, Marina Sánchez‐Hidalgo, Alfredo F. Braña, Cármen Méndez, José A. Salas
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2016.00639

Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion
Cited by: 27
Author(s): Joshua T. Cooper, Geoffrey A. Sinclair, Boris Wawrik
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2020.00947

Molecular Characterization and Comparative Genomic Analysis of vB_PaeP_YA3, a Novel Temperate Bacteriophage of Pseudomonas aeruginosa
Cited by: 5
Author(s): Xinyan Yu, Jianping Xu, Yu Gu, Ruiyang Zhang, Yefei Zhu, Xiaoqiu Liu
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2019.00983

Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves
Cited by: 29
Author(s): Kai Zou, Xueduan Liu, Zhenmin Du, Qin Yang, Shaodong Fu, Delong Meng, Wen-Qi Chang, Rui Li, Huaqun Yin, Yili Liang
Software Mentions: 2
Published: about 7 years ago

10.1111/j.1462-2920.2008.01667.x

The Cry48Aa-Cry49Aa binary toxin fromBacillus sphaericusexhibits highly restricted target specificity
Cited by: 37
Author(s): Gareth Wyn Jones, Margaret C. Wirth, R. G. Monnerat, Colin Berry
Software Mentions: 2
Published: about 18 years ago

10.1111/1462-2920.13036

Closing the gaps on the viral photosystem‐ <scp>I</scp> psa <scp>DCAB</scp> gene organization
Cited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: about 11 years ago

10.1080/22221751.2018.1563455

Detection of human parvovirus 4 DNA in the patients with acute encephalitis syndrome during seasonal outbreaks of the disease in Gorakhpur, India
Cited by: 6
Author(s): Vidya A. Arankalle, Navin Srivastava, K. P. Kushwaha, Agnibha Sen, Ashwini Y. Ramdasi, Priyanka Patel, Sumeet Kuthe, Bangari Haldipur, Gajanan N. Sakpal, Kavita S. Lole, Nilesh Ingle
Software Mentions: 2
Published: almost 8 years ago

10.1002/ece3.5708

Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze River
Cited by: 9
Author(s): Fangyuan Cheng, Qian Wang, Pierpaolo Maisano Delser, Chenhong Li
Software Mentions: 2
Published: about 7 years ago

10.1111/j.1462-2920.2010.02193.x

Ironing out the wrinkles in the rare biosphere through improved OTU clustering
Cited by: 1,150
Author(s): Susan M. Huse, David B. Mark Welch, Hilary G. Morrison, Mitchell L. Sogin
Software Mentions: 2
Published: over 16 years ago

10.3389/fmicb.2017.01772

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Cited by: 21
Author(s): Sergio Triana, Hans de Cock, Robin A. Ohm, Giovanna Danies, Han A. B. Wösten, Silvia Restrepo, Andrés Fernando González Barrios, Adriana Celis
Software Mentions: 2
Published: about 9 years ago

10.3390/md16020042

Proteomic Analyses of the Unexplored Sea Anemone Bunodactis verrucosa
Cited by: 17
Author(s): Dany Domínguez-Pérez, Alexandre Campos, Armando A. Rodríguez, Maria V. Turkina, Tiago Ribeiro, Hugo Osório, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-10-S6-S15

Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria
Cited by: 36
Author(s): Mónica Santamaría, Saverio Vicario, Graziano Pappadà, Gaetano Scioscia, Claudio Scazzocchio, Cecilia Saccone
Software Mentions: 2
Published: over 17 years ago

10.1016/j.csbj.2017.01.002

Deep Assessment of Genomic Diversity in Cassava for Herbicide Tolerance and Starch Biosynthesis
Cited by: 14
Author(s): Jorge Duitama, Lina Kafuri, Daniel Tello, Ana Marı́a Leiva, Bernhard J. Hofinger, Sneha Datta, Zaida Lentini, Ericson Aranzales, Bradley J. Till, Hernán Ceballos
Software Mentions: 2
Published: almost 10 years ago

10.1007/s00284-014-0629-1

The Diversity of Bacteria Isolated from Antarctic Freshwater Reservoirs Possessing the Ability to Produce Polyhydroxyalkanoates
Cited by: 27
Author(s): Sławomir Ciesielski, Dorota Górniak, Justyna Możejko, Aleksander Świątecki, Jakub Grzesiak, Marek K. Zdanowski
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2020.584589

Characterization of a Novel Acyl-ACP Δ9 Desaturase Gene Responsible for Palmitoleic Acid Accumulation in a Diatom Phaeodactylum tricornutum
Cited by: 7
Author(s): Baoling Liu, Yan Sun, Hang Wei, Xiaodan Wang, Jinai Xue, Ronghua Ma, Xiaoyun Jia, Runzhi Li
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2164-10-295

Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napus
Cited by: 20
Author(s): Christian Obermeier, Bashir Hosseini, W. Friedt, Rod J. Snowdon
Software Mentions: 2
Published: almost 18 years ago

10.1371/journal.pone.0076095

Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia
Cited by: 20
Author(s): Jan Šlapeta, Marjorie C. Linares
Software Mentions: 2
Published: about 13 years ago

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