pypi: blast | Projects | Ecosyste.ms: Papers

10.1002/2211-5463.12084

Age‐dependent transcriptional and epigenomic responses to light exposure in the honey bee brain
Cited by: 15
Author(s): Nils B. Becker, Robert Kucharski, Wolfgang Rößler, Ryszard Maleszka
Software Mentions: 3
Published: over 9 years ago

10.3389/fcimb.2020.00041

Tick-Borne Encephalitis Virus Infection Alters the Sialome of Ixodes ricinus Ticks During the Earliest Stages of Feeding
Cited by: 9
Author(s): Charles E. Hart, José M. C. Ribeiro, Mária Kazimírová, Saravanan Thangamani
Software Mentions: 3
Published: over 5 years ago

10.1186/s12870-019-2074-6

Transcriptomic and metabolomic profiling provide novel insights into fruit development and flesh coloration in Prunus mira Koehne, a special wild peach species
Cited by: 37
Author(s): Ying Hong, Jian Shi, Shanshan Zhang, Gesang Pingcuo, Shuo Wang, Fan Zhao, Yongning Cui, Xiuli Zeng
Software Mentions: 3
Published: about 6 years ago

10.1186/1471-2164-8-428

Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison
Cited by: 226
Author(s): S. Pilati, Michele Perazzolli, A. Malossini, Alessandro Cestaro, L. Dematté, Paolo Fontana, A. Dal Rì, Roberto Viola, Riccardo Velasco, C. Moser
Software Mentions: 3
Published: almost 18 years ago

10.1111/j.1742-4658.2009.06893.x

Talin 2 is a large and complex gene encoding multiple transcripts and protein isoforms
Cited by: 58
Author(s): Emmanuel Debrand, Yasmine El Jai, Lorraine Spence, Neil Bate, Uta Praekelt, Catrin Pritchard, Susan J. Monkley, David R. Critchley
Software Mentions: 3
Published: over 16 years ago

10.1186/1471-2105-15-61

CDSbank: taxonomy-aware extraction, selection, renaming and formatting of protein-coding DNA or amino acid sequences
Cited by: 2
Author(s): Bart Hazes
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2164-15-853

Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses
Cited by: 109
Author(s): Zarqa Nawaz, Kaleem Ullah Kakar, Mumtaz Ali Saand, Qingyao Shu
Software Mentions: 3
Published: about 11 years ago

10.1155/2016/6261490

Validation of Housekeeping Genes to Study Human Gingival Stem Cells and TheirIn VitroOsteogenic Differentiation Using Real-Time RT-qPCR
Cited by: 14
Author(s): Ihsène Taïhi, Ali Nassif, Tsouria Berbar, Juliane Isaac, Ariane Berdal, Bruno Gogly, Benjamin Fournier
Software Mentions: 3
Published: almost 10 years ago

10.1186/1471-2164-12-104

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)
Cited by: 176
Author(s): José Blanca, Joaquı́n Cañizares, Cristina Roig, Peio Ziarsolo, F. Nuez, Belén Picó
Software Mentions: 3
Published: over 14 years ago

10.1128/AEM.02885-19

Nutrient Level Determines Biofilm Characteristics and Subsequent Impact on Microbial Corrosion and Biocide Effectiveness
Cited by: 48
Author(s): Silvia J. Salgar-Chaparro, Kateřina Lepková, Thunyaluk Pojtanabuntoeng, Adam Darwin, Laura L. Machuca
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-015-0833-4

GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas
Cited by: 33
Author(s): Guillaume Rivière, Christophe Klopp, Ibouniyamine Nabihoudine, Arnaud Huvet, Pierre Boudry, Pascal Favrel
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pgen.1000732

Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome
Cited by: 332
Author(s): Regina S. Baucom, James C. Estill, Cristian Chaparro, Naadira C. Upshaw, Ansuya Jogi, Jean-Marc Deragon, Richard P. Westerman, Phillip SanMiguel, Jeffrey L. Bennetzen
Software Mentions: 3
Published: almost 16 years ago

10.3389/fmicb.2014.00531

Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships
Cited by: 58
Author(s): Maggie C. Y. Lau, Connor Cameron, Cara Magnabosco, C. Titus Brown, Faye Schilkey, Sharon L. Grim, Sarah Hendrickson, Michael J. Pullin, Barbara Sherwood Lollar, Esta van Heerden, Thomas L. Kieft, Tullis C. Onstott
Software Mentions: 3
Published: about 11 years ago

10.1186/1471-2105-8-307

Protein structural similarity search by Ramachandran codes
Cited by: 45
Author(s): Wei-Cheng Lo, Po-Jung Huang, Chih Hung Chang, Ping Lyu
Software Mentions: 3
Published: about 18 years ago

10.18632/oncotarget.25523

FOXP3 and miR-155 cooperate to control the invasive potential of human breast cancer cells by down regulating ZEB2 independently of ZEB1
Cited by: 19
Author(s): Cheryl Y. Brown, Sonia Dayan, Soon Wei Wong, Adrian Kaczmarek, Christopher Hope, Stephen Pederson, Victoria K Arnet, Gregory J. Goodall, Darryl L. Russell, Timothy Sadlon, Simon C. Barry
Software Mentions: 3
Published: over 7 years ago

10.1099/vir.0.043182-0

Application of next-generation sequencing technologies in virology
Cited by: 223
Author(s): Alan Radford, Dave Chapman, Lucas Dixon, Julian Chantrey, Alistair C. Darby, Neil Hall
Software Mentions: 3
Published: about 13 years ago

10.1099/jgv.0.000902

Polycipiviridae: a proposed new family of polycistronic picorna-like RNA viruses
Cited by: 33
Author(s): Ingrida Olendraitė, Nina I. Lukhovitskaya, Sanford D. Porter, Steven M. Valles, Andrew E. Firth
Software Mentions: 3
Published: about 8 years ago

10.1099/jgv.0.000338

First complete genome sequence of European turkey coronavirus suggests complex recombination history related with US turkey and guinea fowl coronaviruses
Cited by: 31
Author(s): Paul A. Brown, Fabrice Touzain, François-Xavier Briand, A. M. Gouilh, Céline Courtillon, Chantal Allée, Evelyne Lemaitre, Claire de Boisséson, Yannick Blanchard, Nicolas Eterradossi
Software Mentions: 3
Published: almost 10 years ago

10.1155/2015/292950

Challenges of the Unknown: Clinical Application of Microbial Metagenomics
Cited by: 14
Author(s): Graham Rose, David Wooldridge, Catherine Anscombe, Edward T. Mee, Raju Misra, Saheer E. Gharbia
Software Mentions: 3
Published: almost 11 years ago

10.1155/2017/8027626

Transcriptome Analysis of Two Different Developmental Stages of Paeonia lactiflora Seeds
Cited by: 7
Author(s): Yong-Lei Ma, Jinqiu Cui, Xiujun Lu, Lijie Zhang, Zhijing Chen, Riwen Fei, Xiulan Sun
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2018.01272

Comparison of Database Search Methods for the Detection of Legionella pneumophila in Water Samples Using Metagenomic Analysis
Cited by: 8
Author(s): Jednipit Borthong, Ryosuke Omori, Chihiro Sugimoto, Orasa Suthienkul, Ryo Nakao, Kimihito Ito
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2021.642587

Inorganic Chemical Fertilizer Application to Wheat Reduces the Abundance of Putative Plant Growth-Promoting Rhizobacteria
Cited by: 18
Author(s): Tessa E. Reid, Vanessa Nessner Kavamura, Maïder Abadie, Adriana Torres-Ballesteros, Mark Pawlett, Ian M. Clark, J. Arthur Harris, Tim H. Mauchline
Software Mentions: 3
Published: over 4 years ago

10.1155/2008/619832

Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics
Cited by: 1,633
Author(s): Ana Conesa, Stefan Götz
Software Mentions: 3
Published: over 17 years ago

10.3389/fpls.2016.00266

Identification and Characterization of the Sucrose Synthase 2 Gene (Sus2) in Durum Wheat
Cited by: 14
Author(s): Mariateresa Volpicella, Immacolata Fanizza, Claudia Leoni, Ágata Gadaleta, Domenica Nigro, B. Gattulli, Giacomo Mangini, Antonio Blanco, Luigi R. Ceci
Software Mentions: 3
Published: over 9 years ago

10.1099/ijsem.0.004837

Belnapia mucosa sp. nov. and Belnapia arida sp. nov., isolated from desert biocrust
Cited by: 7
Author(s): Esther Molina‐Menor, Àngela Vidal‐Verdú, Leila Satari, Alba Calonge-García, Javier Pascual, Juli Peretó, Manuel Porcar
Software Mentions: 3
Published: over 4 years ago

10.3389/fpls.2020.607651

Isolation of Four Microalgal Strains From the Lake Massaciuccoli: Screening of Common Pollutants Tolerance Pattern and Perspectives for Their Use in Biotechnological Applications
Cited by: 8
Author(s): Carolina Chiellini, Lorenzo Guglielminetti, Sabrina Sarrocco, Adriana Ciurli
Software Mentions: 3
Published: almost 5 years ago

10.1099/ijsem.0.004438

Mycolicibacterium nivoides sp. nov isolated from a peat bog
Cited by: 7
Author(s): John L. Dahl, Wayne Gatlin, Phuong M. Tran, Cody S. Sheik
Software Mentions: 3
Published: over 6 years ago

10.7508/ibj.2015.03.007

Association of Lecithin Cholesterol Acyltransferase rs5923 Polymorphism in Iranian Individuals with Extremely Low High-Density Lipoprotein Cholesterol: Tehran Lipid and Glucose Study.
Cited by: 2
Author(s): Mohsen Naseri, Mehdi Hedayati, Maryam Sadat Daneshpour, Fatemeh Bandarian, Fereidoun Azizi
Software Mentions: 3
Published: almost 11 years ago

10.3389/fvets.2020.605704

New Diagnostic Assays for Differential Diagnosis Between the Two Distinct Lineages of Bovine Influenza D Viruses and Human Influenza C Viruses
Cited by: 1
Author(s): Faten A. Okda, Elizabeth C. Griffith, Ahmed Sakr, Eric Nelson, Richard J. Webby
Software Mentions: 3
Published: almost 5 years ago

10.1534/g3.111.001834

Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.)
Cited by: 8
Author(s): Jung Min Ha, Brian Abernathy, William M. Nelson, David Grant, Xiaolei Wu, Henry T. Nguyen, Gary Stacey, Yeisoo Yu, Rod A. Wing, Randy C. Shoemaker, Scott A. Jackson
Software Mentions: 3
Published: over 13 years ago

10.1534/g3.116.031120

Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea
Cited by: 12
Author(s): Vairavan Lakshmanan, Dhiru Bansal, Jahnavi Kulkarni, Deepak Poduval, Srikar Krishna, Vidyanand Sasidharan, Praveen Anand, Aswin Sai Narain Seshasayee
Software Mentions: 3
Published: about 9 years ago

10.1534/g3.119.400326

De Novo, Divergence, and Mixed Origin Contribute to the Emergence of Orphan Genes inPristionchusNematodes
Cited by: 32
Author(s): Neel Prabh, Christian Rödelsperger
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2018.00217

Identification of Metabolites and Transcripts Involved in Salt Stress and Recovery in Peanut
Cited by: 70
Author(s): Feng Cui, Na Sui, Guangyou Duan, Yiyang Liu, Han Yan, Shanshan Liu, Shubo Wan, Guowei Li
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2019.01015

Detection of First Marker Trait Associations for Resistance Against Sclerotinia sclerotiorum in Brassica juncea–Erucastrum cardaminoides Introgression Lines
Cited by: 39
Author(s): Kusum Rana, Chhaya Atri, Javed Akhatar, Ramanjeet Kaur, Anna Goyal, Mohini Singh, Nitin Kumar, Anju Sharma, P. Sandhu, Gurpreet Kaur, Martin J. Barbetti, S. S. Banga
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.23435

Co-expression of xenopsin and rhabdomeric opsin in photoreceptors bearing microvilli and cilia
Cited by: 49
Author(s): Oliver Vöcking, Ioannis Kourtesis, Sharat Chandra Tumu, Harald Hausen
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2020.01692

Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production
Cited by: 18
Author(s): Jonas De Roos, Marko Verce, Stefan Weckx, Luc De Vuyst
Software Mentions: 3
Published: over 5 years ago

10.3390/genes12020254

Paracellular and Transcellular Leukocytes Diapedesis Are Divergent but Interconnected Evolutionary Events
Cited by: 20
Author(s): Michel‐Edwar Mickael, Norwin Kubick, Pavel Klimovich, Patrick Henckell Flournoy, Irmina Bieńkowska, Mariusz Sacharczuk
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.00825

Dietary High Zinc Oxide Modulates the Microbiome of Ileum and Colon in Weaned Piglets
Cited by: 63
Author(s): Ting Yu, Cui Zhu, Shicheng Chen, Lei Gao, Hang Lv, Ruowei Feng, Qingfeng Zhu, Jianing Xu, Zhuang Chen, Zongyong Jiang
Software Mentions: 3
Published: over 8 years ago

10.3390/ijms22147312

Structure, Distribution, Chemical Composition, and Gene Expression Pattern of Glandular Trichomes on the Leaves of Rhus potaninii Maxim
Cited by: 1
Author(s): Qin Lu, Nawaz Haider Bashir, Haixia Wu, Weiwei Wang, Zhang Jin-wen, Yongzhong Cui, Hang Chen
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2020.555795

Environmental Parameters and Substrate Type Drive Microeukaryotic Community Structure During Short-Term Experimental Colonization in Subtropical Eutrophic Freshwaters
Cited by: 7
Author(s): Changyu Zhu, David Bass, Yutao Wang, Zhuo Shen, Weibo Song, Zhenzhen Yi
Software Mentions: 3
Published: about 5 years ago

10.1186/s13046-019-1239-3

RETRACTED ARTICLE: Down-regulated lncRNA DLX6-AS1 inhibits tumorigenesis through STAT3 signaling pathway by suppressing CADM1 promoter methylation in liver cancer stem cells
Cited by: 64
Author(s): Dongmei Wu, Zihui Zheng, Yingbo Zhang, Shao‐Hua Fan, Zi-Feng Zhang, Yongjian Wang, Yuxin Zheng, Jun Lü
Software Mentions: 3
Published: over 6 years ago

10.3390/jof6010007

Chromosome-Level Comprehensive Genome of Mangrove Sediment-Derived Fungus Penicillium variabile HXQ-H-1
Cited by: 5
Author(s): Ling Peng, Liangwei Li, Xiaochuan Liu, Jianwei Chen, Chengcheng Shi, Wenjie Guo, Qiwu Xu, Guangyi Fan, Xin Liu, Dehai Li
Software Mentions: 3
Published: almost 6 years ago

10.18632/oncotarget.8338

Upregulation of long intergenic noncoding RNA 00673 promotes tumor proliferation via LSD1 interaction and repression of NCALD in non-small-cell lung cancer
Cited by: 59
Author(s): Xuefei Shi, Chenhui Ma, Qingqing Zhu, Dongmei Yuan, Ming Sun, Xiaoling Gu, Guannan Wu, Tangfeng Lv, Yong Song
Software Mentions: 3
Published: over 9 years ago

10.1099/jgv.0.001315

Discovery of two highly divergent negative-sense RNA viruses associated with the parasitic nematode, Capillaria hepatica, in wild Mus musculus from New York City
Cited by: 14
Author(s): Simon H. Williams, Xiaoyu Che, Alexandra Oleynik, Joel A. Garcia, Dorothy R. Muller, Tanja S. Zabka, Cadhla Firth, Robert M. Corrigan, Thomas Briese, Komal Jain, W. Ian Lipkin
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2016.01374

Genomic Dissection and Expression Profiling Revealed Functional Divergence in Triticum aestivum Leucine Rich Repeat Receptor Like Kinases (TaLRRKs)
Cited by: 56
Author(s): . Shumayla, Shailesh Sharma, Rohit Kumar, Venugopal Mendu, Kashmir Singh, Santosh Kumar Upadhyay
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2021.714305

Insights Into the Molecular Evolution of AT-Hook Motif Nuclear Localization Genes in Brassica napus
Cited by: 7
Author(s): Weimeng Zhang, Dongdong Fang, Xiuzhu Cheng, Jun Cao, Xiao‐Li Tan
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.00569

The genome sequence of the colonial chordate, Botryllus schlosseri
Cited by: 209
Author(s): Ayelet Voskoboynik, Norma Neff, Debashis Sahoo, Aaron M. Newman, Dmitry Pushkarev, Winston Koh, Benedetto Passarelli, Hai-Wei Fan, Gary L. Mantalas, Karla J. Palmeri, Katherine J. Ishizuka, Carmela Gissi, Francesca Griggio, Rachel Ben‐Shlomo, Daniel Corey, Lolita Penland, Richard Allen White, Irving L. Weissman, Stephen R. Quake
Software Mentions: 2
Published: over 12 years ago

10.3389/fpls.2017.01653

Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly
Cited by: 18
Author(s): H Busra Cagirici, Sezgi Biyiklioglu, Hikmet Budak
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2014.00356

Unravelling the proteomic profile of rice meiocytes during early meiosis
Cited by: 22
Author(s): Melania Collado-Romero, Enriqueta Alós, Pilar Prieto
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2021.712254

Identification and Characterization of Secondary Wall-Associated NAC Genes and Their Involvement in Hormonal Responses in Tobacco (Nicotiana tabacum)
Cited by: 5
Author(s): Na Xu, Lin Meng, Lin Song, Xiaoxu Li, Shanshan Du, Fengqin Hu, Yuanda Lv, Wenjing Song
Software Mentions: 2
Published: about 4 years ago

10.1186/s12983-017-0225-x

Comparative genomics analyses of alpha-keratins reveal insights into evolutionary adaptation of marine mammals
Cited by: 17
Author(s): Xiaohui Sun, Zhang Zepeng, Yingying Sun, Jing Li, Shixia Xu, Guang Yang
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2017.00594

De novo Sequencing and Transcriptome Analysis Reveal Key Genes Regulating Steroid Metabolism in Leaves, Roots, Adventitious Roots and Calli of Periploca sepium Bunge
Cited by: 7
Author(s): Jian Zhang, Xinglin Li, Fuping Lu, Shan-Ying Wang, Yunhe An, Xiaoxing Su, Xiankuan Li, Lin Ma, Han Guang-jian
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2021.625520

De novo Transcriptome Assembly and Comparative Analysis Highlight the Primary Mechanism Regulating the Response to Selenium Stimuli in Oats (Avena sativa L.)
Cited by: 2
Author(s): Tao Liu, Xiaoting Liu, Rangrang Zhou, Hong Chen, Huaigang Zhang, Bo Zhang
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.59157

Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos
Cited by: 7
Author(s): Joshua F Coulcher, Agnès Roure, Rafath Chowdhury, Méryl Robert, Laury Lescat, Aurélie Bouin, Juliana Carvajal Cadavid, Hiroki Nishida, Sébastien Darras
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.00947

Molecular Characterization and Comparative Genomic Analysis of vB_PaeP_YA3, a Novel Temperate Bacteriophage of Pseudomonas aeruginosa
Cited by: 5
Author(s): Xinyan Yu, Jianping Xu, Yu Gu, Ruiyang Zhang, Yefei Zhu, Xiaoqiu Liu
Software Mentions: 2
Published: over 5 years ago

10.1099/jgv.0.000771

Genome sequence variation in the constricta strain dramatically alters the protein interaction and localization map of Potato yellow dwarf virus
Cited by: 16
Author(s): Chanyong Jang, Renyuan Wang, Joseph R. Wells, F. A. Ponce de León, Mark L. Farman, John Hammond, Michael M. Goodin
Software Mentions: 2
Published: over 8 years ago

10.3390/genes8120385

High-Throughput Sequencing of Small RNA Transcriptomes in Maize Kernel Identifies miRNAs Involved in Embryo and Endosperm Development
Cited by: 15
Author(s): Lijuan Xing, Ming Zhu, Min Zhang, Wenzong Li, Haiyang Jiang, Junjie Zou, Lei Wang, Miaoyun Xu
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms161025657

De Novo Sequencing and Analysis of the Safflower Transcriptome to Discover Putative Genes Associated with Safflor Yellow in Carthamus tinctorius L.
Cited by: 24
Author(s): Xiuming Liu, Yanjun Dong, Na Yao, Yu Zhang, Nan Wang, Xiyan Cui, Xiaowei Li, Yanfang Wang, Fawei Wang, Jing Yang, Lili Guan, Lina Du, Haiyan Li, Xiaokun Li
Software Mentions: 2
Published: about 10 years ago

10.3390/genes9060278

RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis
Cited by: 3
Author(s): Xin Chen, Anjun Ma, Adam McDermaid, Han-Yuan Zhang, Chao Liu, Huansheng Cao, Qin Ma
Software Mentions: 2
Published: over 7 years ago

10.3390/genes9100510

Genome-Wide Identification and Characterization of wALOG Family Genes Involved in Branch Meristem Development of Branching Head Wheat
Cited by: 6
Author(s): Wenzhi Nan, Shandang Shi, Diddugodage Chamila Jeewani, Li Quan, Song Xue, Zhonghua Wang
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms18081734

Genome-Wide Organization and Expression Profiling of the SBP-Box Gene Family in Chinese Jujube (Ziziphus jujuba Mill.)
Cited by: 25
Author(s): Shuang Song, Heng Zhou, Songbai Sheng, Mengshu Cao, Yingyue Li, Xiaoming Pang
Software Mentions: 2
Published: about 8 years ago

10.3389/fphys.2020.00417

Transcriptome Analysis of Ophraella communa Male Reproductive Tract in Indirect Response to Elevated CO2 and Heat Wave
Cited by: 2
Author(s): Xuyuan Gao, Zhonghuan Tian, Yan Zhang, Guangmei Chen, Chunzi Ma, Shaowei Cui, Yongyue Lu, Zhongshi Zhou
Software Mentions: 2
Published: over 5 years ago

10.3390/genes10020081

Complete Genome Sequence Analysis and Characterization of Selected Iron Regulation Genes of Pasteurella Multocida Serotype A Strain PMTB2.1
Cited by: 7
Author(s): Shagufta Jabeen, Huan Yong Yap, Faez Firdaus Jesse Abdullah, Zunita Zakaria, Nurulfiza Mat Isa, Yung-Chie Tan, Yap S Joo, Dilan Amila Satharasinghe, Abdul Rahman Omar
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2018.00423

Halotolerant Exiguobacterium profundum PHM11 Tolerate Salinity by Accumulating L-Proline and Fine-Tuning Gene Expression Profiles of Related Metabolic Pathways
Cited by: 21
Author(s): Vikas Patel, R. P. Srivastava, Anjney Sharma, Anchal Srivastava, Surinder Singh, Alok Kumar Srivastava, Prem Lal Kashyap, Hillol Chakdar, Kurinji Pandiyan, Alok Kalra, Anil Kumar Saxena
Software Mentions: 2
Published: over 7 years ago

10.3390/genes10030219

DNA Methylation Patterns in the Round Goby Hypothalamus Support an On-The-Spot Decision Scenario for Territorial Behavior
Cited by: 10
Author(s): Vincent Somerville, Michaela Schwaiger, Philipp Hirsch, Jean‐Claude Walser, Karen Bussmann, Alexandra Weyrich, Patricia Burkhardt‐Holm, Irene Adrian‐Kalchhauser
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2015.01086

De novo Transcriptome Assembly of a Chinese Locoweed (Oxytropis ochrocephala) Species Provides Insights into Genes Associated with Drought, Salinity, and Cold Tolerance
Cited by: 18
Author(s): Wei He, Zhuang Hu, Yànpíng Fù, Linwei Guo, Bin Guo, Lizhu Guo, Xiuhong Zhang, Yahui Wei
Software Mentions: 2
Published: almost 10 years ago

10.1099/ijsem.0.004806

Kaustia mangrovi gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed Parvibaculaceae family within the order Rhizobiales
Cited by: 12
Author(s): Fatmah O. Sefrji, Ramona Marasco, Grégoire Michoud, Kholoud Seferji, Giuseppe Merlino, Daniele Daffonchio
Software Mentions: 2
Published: over 4 years ago

10.3389/fphys.2016.00096

Characterization of a Digestive α-Amylase in the Midgut of Pieris brassicae L. (Lepidoptera: Pieridae)
Cited by: 12
Author(s): Ali Sharifloo, Arash Zibaee, Jalal Jalali Sendi, Khalil Talebi Jahroumi
Software Mentions: 2
Published: over 9 years ago

10.1155/2021/2590665

Whole-Genome Duplication and Purifying Selection Contributes to the Functional Redundancy of Auxin Response Factor (ARF) Genes in Foxtail Millet (Setaria italica L.)
Cited by: 6
Author(s): Chun‐Xiang You, Bin Liu, Yujun Zhao, Wei Yu, Weina Si
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2016.00639

Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion
Cited by: 27
Author(s): Joshua T. Cooper, Geoffrey A. Sinclair, Boris Wawrik
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2020.601839

Identification of New Helicobacter pylori Subpopulations in Native Americans and Mestizos From Peru
Cited by: 6
Author(s): Andrés Julián Gutiérrez-Escobar, Billie Velapatiño, Víctor Borda, Charles S. Rabkin, Eduardo Tarazona‐Santos, Lilia Cabrera, Jaime Cok, Catherine C. Hooper, M Helena Jahuira Arias, Phabiola Herrera, Mehwish Noureen, Difei Wang, Judith Romero–Gallo, Bao Tran, Richard M. Peek, Douglas E. Berg, Robert H. Gilman, M. Constanza Camargo
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms20236034

Analysis of Centranthera grandiflora Benth Transcriptome Explores Genes of Catalpol, Acteoside and Azafrin Biosynthesis
Cited by: 16
Author(s): Xiaodong Zhang, Caixia Li, Lianchun Wang, Yahong Fei, Wensheng Qin
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.01772

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Cited by: 21
Author(s): Sergio Triana, Hans de Cock, Robin A. Ohm, Giovanna Danies, Han A. B. Wösten, Silvia Restrepo, Andrés Fernando González Barrios, Adriana Celis
Software Mentions: 2
Published: about 8 years ago

10.1099/vir.0.059238-0

Novel hepatitis E like virus found in Swedish moose
Cited by: 53
Author(s): Jay Lin, Helené Norder, Henrik Uhlhorn, Sándor Bélak, Frederik Widén
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2016.00488

Genetic Adaptation of Giant Lobelias (Lobelia aberdarica and Lobelia telekii) to Different Altitudes in East African Mountains
Cited by: 8
Author(s): Shu Ying Zhao, Ling Yun Chen, John K. Muchuku, Guang Hu, Qing Feng Wang
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2019.00983

Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves
Cited by: 29
Author(s): Kai Zou, Xueduan Liu, Zhenmin Du, Qin Yang, Shaodong Fu, Delong Meng, Wen-Qi Chang, Rui Li, Huaqun Yin, Yili Liang
Software Mentions: 2
Published: over 6 years ago

10.3390/genes12050704

CmNAC73 Mediates the Formation of Green Color in Chrysanthemum Flowers by Directly Activating the Expression of Chlorophyll Biosynthesis Genes HEMA1 and CRD1
Cited by: 11
Author(s): Luo Jia, Huan Wang, Sijia Chen, Shengjing Ren, Hansen Fu, Ruirui Li, Caiyun Wang
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2017.01519

Identification and Expression Profile of CYPome in Perennial Ryegrass and Tall Fescue in Response to Temperature Stress
Cited by: 29
Author(s): Tao Xiang, Mingxiu Wang, Yan Dai, Yan Wang, Yan-Fen Fan, Ping Mao, Xinrong Ma
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms21197141

The Hirudo Medicinalis Microbiome Is a Source of New Antimicrobial Peptides
Cited by: 10
Author(s): Ekaterina N. Grafskaia, Elizaveta R. Pavlova, Vladislav V. Babenko, Ivan A. Latsis, Maja V. Malakhova, Victoria N. Lavrenova, Pavel V. Bashkirov, Dmitrii M Belousov, Dmitry V. Klinov, В. Н. Лазарев
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.00156

A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping
Cited by: 6
Author(s): Daniela Holtgräwe, Thomas Rosleff Soerensen, Ludger Hausmann, Boas Pucker, Prisca Viehöver, Reinhard Töpfer, Bernd Weißhaar
Software Mentions: 2
Published: over 5 years ago

10.1099/vir.0.027557-0

Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008
Cited by: 122
Author(s): Alessio Lorusso, Amy L. Vincent, Michelle Harland, David P. Alt, Darrell O. Bayles, Sabrina L. Swenson, Marie Gramer, Colin A. Russell, Derek J. Smith, Kelly M. Lager, Nicola S. Lewis
Software Mentions: 2
Published: almost 15 years ago

10.1038/s41396-020-00860-3

CRISPR-Cas systems restrict horizontal gene transfer in Pseudomonas aeruginosa
Cited by: 46
Author(s): Rachel M. Wheatley, R. Craig MacLean
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.584589

Characterization of a Novel Acyl-ACP Δ9 Desaturase Gene Responsible for Palmitoleic Acid Accumulation in a Diatom Phaeodactylum tricornutum
Cited by: 7
Author(s): Baoling Liu, Yan Sun, Hang Wei, Xiaodan Wang, Jinai Xue, Ronghua Ma, Xiaoyun Jia, Runzhi Li
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41396-018-0326-3

Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation
Cited by: 83
Author(s): Greta Reintjes, Carol Arnosti, Bernhard M. Fuchs, Rudolf Amann
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms22062837

Transcriptional Regulatory Networks Associate with Early Stages of Potato Virus X Infection of Solanum tuberosum
Cited by: 5
Author(s): Venura Herath, Jeanmarie Verchot
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms22084281

Catalase (CAT) Gene Family in Rapeseed (Brassica napus L.): Genome-Wide Analysis, Identification, and Expression Pattern in Response to Multiple Hormones and Abiotic Stress Conditions
Cited by: 66
Author(s): Ali Raza, Wei Su, Ang Gao, Sundas Saher Mehmood, Muhammad Hussain, Nie Wen-long, Yan Lv, Xiling Zou, Xuekun Zhang
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2020.570915

Expression of LhFT1, the Flowering Inducer of Asiatic Hybrid Lily, in the Bulb Scales
Cited by: 5
Author(s): Kana Kurokawa, Junya Kobayashi, Keiichirou Nemoto, Akira Nozawa, Tatsuya Sawasaki, Takashi Nakatsuka, Masumi Yamagishi
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms221910300

Mitochondrial Genomes, Phylogenetic Associations, and SNP Recovery for the Key Invasive Ponto-Caspian Amphipods in Europe
Cited by: 8
Author(s): Tomasz Mamos, Michał Grabowski, Tomasz Rewicz, Jamie Bojko, Dominik Strapagiel, Artur Burzyński
Software Mentions: 2
Published: about 4 years ago

10.3389/fneur.2018.00465

Environmental Enrichment Upregulates Striatal Synaptic Vesicle-Associated Proteins and Improves Motor Function
Cited by: 6
Author(s): Suk Young Song, Minji Chae, Ji Hea Yu, Min Young Lee, Soonil Pyo, Yeseul Shin, Ahreum Baek, Jung Won Park, Eun Sook Park, Ja Young Choi, Sung Rae Cho
Software Mentions: 2
Published: over 7 years ago

10.3390/jof7050399

What Role Might Non-Mating Receptors Play in Schizophyllum commune?
Cited by: 9
Author(s): Sophia Wirth, Daniela Freihorst, Katrin Krause, Erika Kothe
Software Mentions: 2
Published: over 4 years ago

10.1111/jipb.12742

Involvement of sweet pepperCaLOX2in jasmonate-dependent induced defence against Western flower thrips
Cited by: 28
Author(s): Sandeep J. Sarde, Klaas Bouwmeester, Jhon Venegas‐Molina, Anja David, Wilhelm Boland, Marcel Dicke
Software Mentions: 2
Published: over 6 years ago

10.1534/g3.117.043083

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size
Cited by: 20
Author(s): David L. Oldeschulte, Yvette A. Halley, Miranda Wilson, Eric K. Bhattarai, Wesley Brashear, Joshua A. Hill, Richard P. Metz, Charles D. Johnson, Dale Rollins, Markus J. Peterson, Derek M. Bickhart, Jared E. Decker, John F. Sewell, Christopher M. Seabury
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2015.01044

Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function
Cited by: 22
Author(s): William P. Inskeep, Zackary J. Jay, Richard E. Macur, Scott Clingenpeel, Aaron Tenney, David Lovalvo, Jacob P. Beam, Mark A. Kozubal, Wayne C. Shanks, Lisa A. Morgan, Jinjun Kan, Yuri A. Gorby, Shibu Yooseph, Kenneth H. Nealson
Software Mentions: 2
Published: about 10 years ago

10.1186/s12974-016-0602-y

Reduction of cytosolic phospholipase A2α upregulation delays the onset of symptoms in SOD1G93A mouse model of amyotrophic lateral sclerosis
Cited by: 22
Author(s): Yulia Solomonov, Nurit Hadad, Rachel Lévy
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2021.642631

Epigenetic Variability Among Saffron Crocus (Crocus sativus L.) Accessions Characterized by Different Phenotypes
Cited by: 13
Author(s): Matteo Busconi, Elisabeth Wischnitzki, Marcello Del Corvo, Licia Colli, Giovanna Soffritti, Lorenzo Stagnati, Silvia Fluch, Eva Maria Sehr, Marcelino de los Mozos Pascual, José Antonio Fernández
Software Mentions: 2
Published: over 4 years ago

10.1534/g3.120.401205

Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (Betta splendens) in a University Master’s Course
Cited by: 11
Author(s): Stefan Prost, Malte Petersen, Martin Grethlein, Sarah Joy Hahn, Nina Kuschik-Maczollek, Martyna Ewa Olesiuk, Jan-Olaf Reschke, Tamara Elke Schmey, Caroline Zimmer, Deepak Kumar Gupta, Tilman Schell, Raphael T. F. Coimbra, Jordi de Raad, Fritjof Lammers, Sven Winter, Axel Janke
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2016.02058

A Comprehensive Prescription for Plant miRNA Identification
Cited by: 38
Author(s): Burcu Alptekin, Bala Anı Akpınar, Hikmet Budak
Software Mentions: 2
Published: almost 9 years ago

10.1099/jgv.0.001607

Identification of protein interactions of grapevine fanleaf virus RNA-dependent RNA polymerase during infection of Nicotiana benthamiana by affinity purification and tandem mass spectrometry
Cited by: 2
Author(s): Larissa J. Osterbaan, Victoria Hoyle, Michelle Curtis, Stacy L. DeBlasio, Keith Rivera, Michelle Heck, Marc Fuchs
Software Mentions: 2
Published: over 4 years ago

10.1534/g3.116.038448

Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi
Cited by: 21
Author(s): Pierre‐Yves Dupont, Murray P. Cox
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.115.018382

Identification of Reproduction-Related Gene Polymorphisms Using Whole Transcriptome Sequencing in the Large White Pig Population
Cited by: 30
Author(s): Daniel Fischer, Asta Laiho, Attila Gyenesei
Software Mentions: 2
Published: over 10 years ago

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