pypi: blast | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-12713-9

Transcriptome analysis of Spodoptera frugiperda Sf9 cells reveals putative apoptosis-related genes and a preliminary apoptosis mechanism induced by azadirachtin
Cited by: 23
Author(s): Benshui Shu, Jingjing Zhang, Sethuraman Veeran, Gaofeng Cui, Xin Yi, Guohua Zhong
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0106649

Two Low Coverage Bird Genomes and a Comparison of Reference-Guided versus De Novo Genome Assemblies
Cited by: 25
Author(s): Daren C. Card, Drew R. Schield, Jacobo Reyes-Velasco, Matthew K. Fujita, Audra L. Andrew, Sara J. Oyler‐McCance, Jennifer A. Fike, Diana F. Tomback, Robert P. Ruggiero, Todd A. Castoe
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-017-16435-w

Isolation and functional identification of three cuticle protein genes during metamorphosis of the beet armyworm, Spodoptera exigua
Cited by: 15
Author(s): Saad Jan, Sisi Liu, Muhammad Hafeez, Xiangmei Zhang, Farman Ullah Dawar, Jian Guo, Chao Gao, Mo Wang
Software Mentions: 1
Published: about 7 years ago

10.3390/toxins4050296

Disintegrins from Hematophagous Sources
Cited by: 36
Author(s): Teresa C.F. Assumpção, José M. C. Ribeiro, Ivo M.B. Francischetti
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-017-17269-2

Quantitative trait loci mapping for feed conversion efficiency in crucian carp (Carassius auratus)
Cited by: 18
Author(s): Maolin Pang, Bishi Fu, Xin Yu, Haiyang Liu, Xinhua Wang, Zhan Yin, Shouqi Xie, Jingou Tong
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17953-3

PiT2 regulates neuronal outgrowth through interaction with microtubule-associated protein 1B
Cited by: 11
Author(s): Xixiang Ma, Xiangyang Li, Ping Yi, Cheng Wang, Jun Weng, Li Zhang, Xuan Xu, Hao Sun, Shenglei Feng, Kai Li, Rui Chen, Shiyue Du, Xiao Mao, Xiaomei Zeng, Luo-Ying Zhang, Mugen Liu, Beisha Tang, Xuemei Zhu, Jin Shan, Jingyu Liu
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-18937-z

Human complement receptor type 1 (CR1) protein levels and genetic variants in chronic Chagas Disease
Cited by: 9
Author(s): Thaisa Lucas Sandri, Kárita Cláudia Freitas Lidani, Fabiana Antunes Andrade, Christian G. Meyer, Peter G. Kremsner, Iara José de Messias-Reason, Thirumalaisamy P. Velavan
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0226107

Optimizing sgRNA length to improve target specificity and efficiency for the GGTA1 gene using the CRISPR/Cas9 gene editing system
Cited by: 26
Author(s): Anders W. Matson, Nora Hosny, Zachary Swanson, Bernhard J. Hering, Christopher Burlak
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0064799

Draft Genome Sequence, and a Sequence-Defined Genetic Linkage Map of the Legume Crop Species Lupinus angustifolius L
Cited by: 99
Author(s): Huaan Yang, Ye Tao, Zequn Zheng, Qisen Zhang, Gaofeng Zhou, Mark Sweetingham, John Howieson, Chengdao Li
Software Mentions: 1
Published: over 11 years ago

10.3390/toxins9010023

Analysis of MicroRNA Expression Profiling Involved in MC-LR-Induced Cytotoxicity by High-Throughput Sequencing
Cited by: 22
Author(s): Jing Ma, Yuanyuan Li, Lan Yao, Xiaoyü Li
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0020968

Haloquadratum walsbyi : Limited Diversity in a Global Pond
Cited by: 99
Author(s): Mike Dyall‐Smith, Friedhelm Pfeiffer, Kathrin Klee, Peter Palm, Karin Gross, Stephan C. Schuster, Markus Rampp, Dieter Oesterhelt
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-018-21598-1

Transcriptome changes induced by abiotic stresses in Artemisia annua
Cited by: 30
Author(s): Divya Vashisth, Ritesh Kumar, Shantanu Rastogi, Vikas Patel, Alok Kalra, Madan M. Gupta, Anil Kumar Gupta, Ajit Kumar Shasany
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21919-4

Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207
Cited by: 28
Author(s): Zarrin Basharat, Azra Yasmin, Tao He, Yigang Tong
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-22235-7

Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum
Cited by: 15
Author(s): Duarte Gouveia, François Bonneton, Christine Almunia, Jean Armengaud, H. Quéau, Davide Degli-Esposti, Olivier Geffard, Arnaud Chaumot
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0164293

Genome-Wide Association of Stem Water Soluble Carbohydrates in Bread Wheat
Cited by: 31
Author(s): Yan Dong, Jindong Liu, Yan Zhang, Hao Geng, Awais Rasheed, Yonggui Xiao, Shuanghe Cao, Luping Fu, Jun Yan, Weie Wen, Zhang Yong, Ruilian Jing, Xianchun Xia, Zhonghu He
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0057464

Pseudomonas syringae pv. actinidiae from Recent Outbreaks of Kiwifruit Bacterial Canker Belong to Different Clones That Originated in China
Cited by: 119
Author(s): Margaret I. Butler, Peter A. Stockwell, Michael A. Black, Robert C. Day, Iain L. Lamont, Russell T. M. Poulter
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-018-24674-8

Heterologous DNA prime-protein boost immunization with RecA and FliD offers cross-clade protection against leptospiral infection
Cited by: 12
Author(s): Raja Veerapandian, Sankaran Sobana, Charles Solomon Akino Mercy, Bianca Cotto, Durlav Prasad Bora, Kalimuthusamy Natarajaseenivasan
Software Mentions: 1
Published: over 6 years ago

10.1128/mSystems.00242-21

Component Parts of Bacteriophage Virions Accurately Defined by a Machine-Learning Approach Built on Evolutionary Features
Cited by: 5
Author(s): Tze Young Thung, Murray E. White, Wei Dai, Jonathan J. Wilksch, Rebecca S. Bamert, Andrea Rocker, Christopher J. Stubenrauch, D. F. Williams, Cheng Huang, Ralf Schittelhelm, Jeremy J. Barr, Eleanor Jameson, Sheena McGowan, Yanju Zhang, Jiawei Wang, Rhys A. Dunstan, Trevor Lithgow
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-25071-x

Whole genome sequencing in the search for genes associated with the control of SIV infection in the Mauritian macaque model
Cited by: 4
Author(s): Marc de Manuel, Takashi Shiina, Shingo Suzuki, Nathalie Dereuddre‐Bosquet, Henri‐Jean Garchon, Masayuki Tanaka, Nicolas Congy-Jolivet, Alice Aarnink, Roger Le Grand, Tomàs Marquès‐Bonet, Antoine Blancher
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24481-1

Screen and Verification for Transgene Integration Sites in Pigs
Cited by: 9
Author(s): Linglei Ma, Yuzhe Wang, Haitao Wang, Yiqing Hu, Jingyao Chen, Tan Tan, Man Hu, Xiaojuan Liu, Ran Zhang, Yiming Xing, Yaofeng Zhao, Xiaoxiang Hu, Ning Li
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-26071-7

Indoor wet cells as a habitat for melanized fungi, opportunistic pathogens on humans and other vertebrates
Cited by: 13
Author(s): Xiaofang Wang, Wenying Cai, A. H. G. Gerrits van den Ende, Junmin Zhang, Ting Xie, Liyan Xi, Xiqing Li, Jiufeng Sun, Sybren de Hoog
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0195138

Genome-wide identification of wheat (Triticum aestivum) expansins and expansin expression analysis in cold-tolerant and cold-sensitive wheat cultivars
Cited by: 20
Author(s): Junfeng Zhang, Yongqing Xu, J. Q. Dong, Lina Peng, Feng Xu, Xu Wang, Fĕi Li, Miao Yu, Shu-Kuan Yao, Qing Shan Zhao, Shanshan Feng, HU Bao-zhong
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-32234-3

Diminished TLR2-TLR9 mediated CD4+ T cell responses are associated with increased inflammation in intraocular tuberculosis
Cited by: 8
Author(s): Ravi Sharma, Jyoti Sharma, Zafar K. Khan, Ajinkya Pattekar, Vishali Gupta, Reema Bansal, Kusum Sharma, Ashutosh N. Aggarwal, Amod Gupta, Naresh Sachdeva
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34774-0

Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data
Cited by: 1
Author(s): Haojing Shao, Chenxi Zhou, Minh Duc Cao, Lachlan Coin
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-35304-8

Transcriptome analysis provides insight into prickle development and its link to defense and secondary metabolism in Solanum viarum Dunal
Cited by: 28
Author(s): Shatrujeet Pandey, Ridhi Goel, Anu Bhardwaj, Mehar Hasan Asif, Samir V. Sawant, Pratibha Misra
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-35996-y

iTRAQ-based quantitative tissue proteomic analysis of differentially expressed proteins (DEPs) in non-transgenic and transgenic soybean seeds
Cited by: 41
Author(s): Weixiao Liu, Wentao Xu, Li Liang, Meng‐Jie Dong, Yusong Wan, Xiaoyun He, Huang KunLun, Wujun Jin
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-36209-2

Miniscule differences between sex chromosomes in the giant genome of a salamander
Cited by: 23
Author(s): Melissa C. Keinath, Nataliya Timoshevskaya, Vladimir A. Timoshevskiy, S. Randal Voss, Jeramiah J. Smith
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-36211-8

Modulation of benzylisoquinoline alkaloid biosynthesis by overexpression berberine bridge enzyme in Macleaya cordata
Cited by: 12
Author(s): Peng Huang, Wei Liu, Min Xu, Ruolan Jiang, Liqiong Xia, Peng Wang, Han Li, Zhaoyang Tang, Qiyin Zheng, Jianguo Zeng
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-36573-z

Hidden mycota of pine needles: Molecular signatures from PCR-DGGE and Ribosomal DNA phylogenetic characterization of novel phylotypes
Cited by: 14
Author(s): Rajesh Jeewon, Quin S. Y. Yeung, Dhanushka N. Wannasinghe, Sillma Rampadarath, Daneshwar Puchooa, Hongkai Wang, Kevin D. Hyde
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-35983-3

SOX2 participates in spermatogenesis of Zhikong scallop Chlamys farreri
Cited by: 15
Author(s): Suzhe Liang, Danwen Liu, Xixi Li, Maokai Wei, Xiaobin Yu, Li Qi, Huixin Ma, Zhifeng Zhang, Zhenkui Qin
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-38733-1

Plasmid DNA contaminant in molecular reagents
Cited by: 20
Author(s): N. Wally, Martina Schneider, Jakob Thannesberger, Marie-Theres Kastner, Tamás Bakonyi, Stanislav Indik, Thomas Rattei, Janis R. Bedarf, Falk Hildebrand, John Lok Man Law, Juan Jovel, Christoph Steininger
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0094779

Analysis of Insecticide Resistance-Related Genes of the Carmine Spider Mite Tetranychus cinnabarinus Based on a De Novo Assembled Transcriptome
Cited by: 37
Author(s): Zhenbo Xu, Wenyi Zhu, Yanchao Liu, Xing Liu, Qiushuang Chen, Peng Miao, Xiangzun Wang, Guangmao Shen, Lin He
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0015388

Structural Relationships in the Lysozyme Superfamily: Significant Evidence for Glycoside Hydrolase Signature Motifs
Cited by: 82
Author(s): A. Wohlkonig, Joëlle Huet, Yvan Looze, René Wintjens
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0069955

Genome Wide Analysis of the Apple MYB Transcription Factor Family Allows the Identification of MdoMYB121 Gene Confering Abiotic Stress Tolerance in Plants
Cited by: 156
Author(s): Zhong-Hui Cao, Shizhong Zhang, Rong-Kai Wang, Ruifen Zhang, Yu‐Jin Hao
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-019-41936-1

Genomic insights into HSFs as candidate genes for high-temperature stress adaptation and gene editing with minimal off-target effects in flax
Cited by: 17
Author(s): Dipnarayan Saha, Pinaki Mukherjee, Sourav Dutta, Kanti Meena, S. K. Sarkar, Asit Baran Mandal, Tapash Dasgupta, Jiban Mitra
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0184528

Development of hop transcriptome to support research into host-viroid interactions
Cited by: 24
Author(s): Tine Pokorn, Sebastjan Radišek, Branka Javornik, Nataša Štajner, Jernej Jakše
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0025973

Regulation of DCC Localization by HTZ-1/H2A.Z and DPY-30 Does not Correlate with H3K4 Methylation Levels
Cited by: 7
Author(s): Emily L. Petty, Emily Laughlin, Györgyi Csankovszki
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-019-43235-1

Thymosin β-4 is a novel regulator for primary cilium formation by nephronophthisis 3 in HeLa human cervical cancer cells
Cited by: 14
Author(s): Jae‐Wook Lee, Hong Sug Kim, Eun‐Yi Moon
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43396-z

Proteomic and structural differences in lumpfish skin among the dorsal, caudal and ventral regions
Cited by: 7
Author(s): Deepti Manjari Patel, Katarína Bhide, Mangesh Bhide, Martin Haugmo Iversen, Monica F. Brinchmann
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0116457

Strain-Level Diversity of Secondary Metabolism in Streptomyces albus
Cited by: 82
Author(s): Ryan F. Seipke
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-019-46185-w

Activation of The Phosphatidylcholine to Lysophosphatidylcholine Pathway Is Associated with Osteoarthritis Knee Cartilage Volume Loss Over Time
Cited by: 31
Author(s): Guangju Zhai, Jean‐Pierre Pelletier, Ming Liu, Dawn Aitken, Edward Randell, Proton Rahman, Graeme Jones, Johanne Martel‐Pelletier
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46321-6

The rpl23 gene and pseudogene are hotspots of illegitimate recombination in barley chloroplast mutator seedlings
Cited by: 5
Author(s): Franco Lencina, Alejandra Landau, M. Petterson, M. Pacheco, Ken Kobayashi, Alberto R. Prina
Software Mentions: 1
Published: over 5 years ago

10.1111/j.1600-0854.2007.00631.x

Two Human ARFGAPs Associated with COP-I-Coated Vesicles
Cited by: 51
Author(s): Gabriella Frigerio, Neil Grimsey, Martin Dale, Irina Majoul, Rainer Duden
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0153810

The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding
Cited by: 26
Author(s): Nora Gutsche, Sabine Zachgo
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-019-50194-0

Functional metagenomic analysis of dust-associated microbiomes above the Red Sea
Cited by: 22
Author(s): Nojood Aalismail, David Kamanda Ngugi, Rubén Díaz‐Rúa, Intikhab Álam, Michael Cusack, Carlos M. Duarte
Software Mentions: 1
Published: about 5 years ago

10.3906/biy-1809-27

Prediction and expression analysis of G protein-coupled receptors in the laboratory stick insect, <i>Carausius</i> <i>morosus</i>
Cited by: 8
Author(s): Burcin Duan Sahbaz
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-52118-4

Molecular characterization of root-knot nematodes (Meloidogyne spp.) from Arkansas, USA
Cited by: 14
Author(s): Weimin Ye, R. T. Robbins, T. L. Kirkpatrick
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52421-0

Comparative gene expression profile analysis of ovules provides insights into Jatropha curcas L. ovule development
Cited by: 13
Author(s): Gang Xu, Jian Huang, Shikang Lei, Xueguang Sun, Li Xue
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53106-4

Frequent occurrence of Mungbean yellow mosaic India virus in tomato leaf curl disease affected tomato in Oman
Cited by: 7
Author(s): Muhammad Shahid, Muhammad Shafiq, Muhammad Ilyas, Amir Raza, M. N. Al-Sadrani, Abdullah M. Al-Sadi, R. W. Briddon
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0003764

Clostridium perfringens Delta Toxin Is Sequence Related to Beta Toxin, NetB, and Staphylococcus Pore-Forming Toxins, but Shows Functional Differences
Cited by: 45
Author(s): Maria Manich, Oliver Knapp, Maryse Gibert, Elke Maier, Colette Jolivet-Reynaud, Blandine Geny, Roland Benz, Michel R. Popoff
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0165875

Transcriptome Analysis and Comparison of Marmota monax and Marmota himalayana
Cited by: 8
Author(s): Yanan Liu, Baoju Wang, Lu Wang, Vikash Vikash, Qin Wang, Michael Roggendorf, Mengji Lu, Dongliang Yang, Jia Liu
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0018267

Global Expression Analysis Revealed Novel Gender-Specific Gene Expression Features in the Blood Fluke Parasite Schistosoma japonicum
Cited by: 28
Author(s): Xiangshu Piao, Pengfei Cai, Shuai Liu, Nan Hou, Lili Hao, Fan Yang, Heng Wang, Jianwei Wang, Qi Jin, Qijun Chen
Software Mentions: 1
Published: over 13 years ago

10.3906/biy-1802-3

Identification of conserved miRNA molecules in einkorn wheat ( Triticum monococcum subsp. monococcum ) by using small RNA sequencing analysis
Cited by: 5
Author(s): Ercan Selçuk Ünlü, Sara Bataw, Didem Aslan Şen, Yunus Şahin, Nüsret Zencirci
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0068452

Male-Biased Genes in Catfish as Revealed by RNA-Seq Analysis of the Testis Transcriptome
Cited by: 65
Author(s): Fenyong Sun, Shikai Liu, Xiaoyu Gao, Yanliang Jiang, Dayan A. Perera, Xiuli Wang, Chao Li, Luyang Sun, Jiaren Zhang, Ludmilla Kaltenboeck, Rex A. Dunham, Zhanjiang Liu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0122728

The pbrB Gene Encodes a Laccase Required for DHN-Melanin Synthesis in Conidia of Talaromyces (Penicillium) marneffei
Cited by: 32
Author(s): Ariya Sapmak, Kylie J. Boyce, Alex Andrianopoulos, Nongnuch Vanittanakom
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0181471

Transcriptome analysis of the sea cucumber (Apostichopus japonicus) with variation in individual growth
Cited by: 18
Author(s): Lei Gao, Chongbo He, Xiangbo Bao, Meilin Tian, Zhen Ma
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0057233

Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing
Cited by: 95
Author(s): Runxuan Zhang, David Marshall, Glenn J. Bryan, Csaba Hornyik
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0098357

Echinococcus P29 Antigen: Molecular Characterization and Implication on Post-Surgery Follow-Up of CE Patients Infected with Different Species of the Echinococcus granulosus Complex
Cited by: 28
Author(s): Ghalia Boubaker, Bruno Gottstein, Andrew Hemphill, Hamouda Babba, Markus Spiliotis
Software Mentions: 1
Published: over 10 years ago

10.3906/biy-1912-18

Prediction, isolation, overexpression and antifungal activity analysis of Medicagotruncatula var. truncatula putative thaumatin like proteins (TLP-1, -2, -3, -4 and -5)
Cited by: 4
Author(s): Maryam Saeidi, Reza Zareie
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0093321

Development of a T Cell Receptor Targeting an HLA-A*0201 Restricted Epitope from the Cancer-Testis Antigen SSX2 for Adoptive Immunotherapy of Cancer
Cited by: 21
Author(s): Daniel Abate-Daga, Daniel E. Speiser, Nachimuthu Chinnasamy, Zhili Zheng, Hui Xu, Steven A. Feldman, Steven A. Rosenberg, Richard A. Morgan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0022014

Cytochrome c-554 from Methylosinus trichosporium OB3b; a Protein That Belongs to the Cytochrome c2 Family and Exhibits a HALS-Type EPR Signal
Cited by: 6
Author(s): Espen Harbitz, Karin Andersson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0155472

Deciphering the Bacterial Microbiome in Huanglongbing-Affected Citrus Treated with Thermotherapy and Sulfonamide Antibiotics
Cited by: 26
Author(s): Chuanyu Yang, Charles A. Powell, Yongping Duan, Robert G. Shatters, Jingping Fang, Muqing Zhang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0085491

Comparative Genome Analysis of Campylobacter fetus Subspecies Revealed Horizontally Acquired Genetic Elements Important for Virulence and Niche Specificity
Cited by: 32
Author(s): Sabine Kienesberger, Hanna Sprenger, Stella Wolfgruber, Bettina Halwachs, Gerhard G. Thallinger, Guillermo I. Perez-Perez, Martin J. Blaser, Ellen L. Zechner, Gregor Gorkiewicz
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0196979

RNAi screening of subtracted transcriptomes reveals tumor suppression by taurine-activated GABAA receptors involved in volume regulation
Cited by: 0
Author(s): Camiel L C Wielders, Pim van Nierop, Tinke L. Vormer, Floris Foijer, Joanne Verheij, J.C. Lodder, Jesper B. Andersen, Huibert D. Mansvelder, Hein te Riele
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0056697

Overexpression of the Artemisia Orthologue of ABA Receptor, AaPYL9, Enhances ABA Sensitivity and Improves Artemisinin Content in Artemisia annua L
Cited by: 43
Author(s): Fangyuan Zhang, Xu Lu, Zongyou Lv, Ling Zhang, Mengmeng Zhu, Weimin Jiang, Guofeng Wang, Xiaofen Sun, Kexuan Tang
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0076957

Transcriptome-Mining for Single-Copy Nuclear Markers in Ferns
Cited by: 65
Author(s): Carl J. Rothfels, Anders Larsson, Fay‐Wei Li, Erin M. Sigel, Layne Huiet, Dylan O. Bürge, Markus Ruhsam, Sean W. Graham, D. W. Stevenson, Gane Ka‐Shu Wong, Petra Korall, Kathleen M. Pryer
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0150892

Transcriptomic Analysis of Differentially Expressed Genes during Flower Organ Development in Genetic Male Sterile and Male Fertile Tagetes erecta by Digital Gene-Expression Profiling
Cited by: 18
Author(s): Ye Ai, Qinghua Zhang, Weining Wang, Chunyu Zhang, Zhe Cao, Manzhu Bao, Yan‐Hong He
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0059592

Short-Term In-Vitro Expansion Improves Monitoring and Allows Affordable Generation of Virus-Specific T-Cells against Several Viruses for a Broad Clinical Application
Cited by: 34
Author(s): René Geyeregger, Christine Freimüller, Stefan Stevanović, Julia Stemberger, Gabor Mester, Jasmin Dmytrus, Thomas Lion, Hans‐Georg Rammensee, Gottfried Fischer, Britta Eiz‐Vesper, Anita Lawitschka, Susanne Matthes, Gerhard Fritsch
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0053276

Analysis of Virion-Incorporated Host Proteins Required for Herpes Simplex Virus Type 1 Infection through a RNA Interference Screen
Cited by: 52
Author(s): Camille Stegen, Yordanka Yakova, Daniel Henaff, Julien Nadjar, Johanne Duron, Roger Lippé
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2019.00434

Genomic and Functional Characterization of Enterococcus mundtii QAUEM2808, Isolated From Artisanal Fermented Milk Product Dahi
Cited by: 14
Author(s): Nawaz Farah, Muhammad Nadeem Khan, Aqib Javed, Ibrar Ahmed, Naeem Ali, Muhammad Ishtiaq Ali, Syeda Mariam Bakhtiar, Muhammad Imran
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-63882-z

Whole-Genome Analysis of Cervical Human Papillomavirus Type 35 from rural Zimbabwean Women
Cited by: 3
Author(s): Megan B. Fitzpatrick, Zoe Hahn, Racheal S. Dube Mandishora, Jenny Dao, Jenna Weber, ChunHong Huang, Malaya K. Sahoo, David Katzenstein, Benjamin A. Pinsky
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2017.02530

Glyphosate Shapes a Dinoflagellate-Associated Bacterial Community While Supporting Algal Growth as Sole Phosphorus Source
Cited by: 24
Author(s): Cong Wang, Xin Lin, Ling Li, Lingxiao Lin, Senjie Lin
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-64554-8

Endosulfan exposure alters transcription of genes involved in the detoxification and stress responses in Physella acuta
Cited by: 9
Author(s): María Alonso-Trujillo, Ana-Belén Muñiz-González, José-Luis Martínez-Guitarte
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2016.02048

Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression
Cited by: 57
Author(s): Jake C. Fountain, Prasad Bajaj, Spurthi N. Nayak, Liming Yang, Manish K. Pandey, Vinay Kumar, Ashwin S. Jayale, Anu Chitikineni, Robert D. Lee, Robert C. Kemerait, Rajeev K. Varshney, Bao‐Zhu Guo
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-64872-x

Transcriptomes shed light on transgenerational and developmental effects of ocean warming on embryos of the sea urchin Strongylocentrotus intermedius
Cited by: 12
Author(s): Dongtao Shi, Chong Zhao, Yang Chen, Jingyun Ding, Lisheng Zhang, Yaqing Chang
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0131498

Taxonomic Resolutions Based on 18S rRNA Genes: A Case Study of Subclass Copepoda
Cited by: 78
Author(s): Shu Wu, Jie Xiong, Yuhe Yu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0151181

Collagen-Hydroxyapatite Scaffolds Induce Human Adipose Derived Stem Cells Osteogenic Differentiation In Vitro
Cited by: 99
Author(s): Giovanna Calabrese, Raffaella Giuffrida, Claudia Fabbi, Elisa Figallo, Debora Lo Furno, Rosario Gulino, Cristina Colarossi, Francesco Fullone, Rosario Giuffrida, Rosalba Parenti, Lorenzo Memeo, Stefano Forte
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0076938

Insight into Molecular and Functional Properties of NMNAT3 Reveals New Hints of NAD Homeostasis within Human Mitochondria
Cited by: 47
Author(s): Roberta Felici, Andrea Lapucci, Matteo Ramazzotti, Alberto Chiarugi
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2018.01245

Genome-Wide Analysis Reveals Ancestral Lack of Seventeen Different tRNAs and Clade-Specific Loss of tRNA-CNNs in Archaea
Cited by: 0
Author(s): Yue Wu, Ping Wu, Bin Wang, Zhu‐Qing Shao
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0187803

Performance of DNA metabarcoding, standard barcoding, and morphological approach in the identification of host–parasitoid interactions
Cited by: 31
Author(s): Martin Šigut, Martin Kostovčík, Hana Šigutová, Jiří Hulcr, Pavel Drozd, Jan Hrček
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2018.02384

WebHERV: A Web Server for the Computational Investigation of Gene Expression Associated With Endogenous Retrovirus-Like Sequences
Cited by: 3
Author(s): Konstantin Kruse, Martin Nettling, Nadine Wappler, Alexander Emmer, Malte Kornhuber, Martin S. Staege, Ivo Große
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.00701

Probiotic Consortia: Reshaping the Rhizospheric Microbiome and Its Role in Suppressing Root-Rot Disease of Panax notoginseng
Cited by: 42
Author(s): Jinhao Zhang, Lanfang Wei, Jun Yang, Waqar Ahmed, Yating Wang, FU Li-dong, Guanghai Ji
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0151186

Proteomic Analysis of the Secretome of Cellulomonas fimi ATCC 484 and Cellulomonas flavigena ATCC 482
Cited by: 19
Author(s): Warren W. Wakarchuk, Denis Brochu, Simon J. Foote, Anna Robotham, Hirak Saxena, Tamara Erak, John Kelly
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.704802

Digging Up the Roots: Taxonomic and Phylogenetic Disentanglements in Corticiaceae s.s. (Corticiales, Basidiomycota) and Evolution of Nutritional Modes
Cited by: 3
Author(s): Masoomeh Ghobad-Nejhad, Ewald Langer, Karen K. Nakasone, Paul Diederich, R. Henrik Nilsson, Mario Rajchenberg, J. Ginns
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-020-66256-7

Shotgun proteomics reveals putative polyesterases in the secretome of the rock-inhabiting fungus Knufia chersonesos
Cited by: 10
Author(s): Donatella Tesei, Felice Quartinello, Georg M. Guebitz, Doris Ribitsch, Katharina Nöbauer, Ebrahim Razzazi-Fazeli, Katja Sterflinger
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.656896

Analysis of Antimicrobial Peptide Metabolome of Bacterial Endophyte Isolated From Traditionally Used Medicinal Plant Millettia pachycarpa Benth
Cited by: 13
Author(s): Ng Ngashangva, Pulok K. Mukherjee, Kusum Sharma, Mohan Chandra Kalita, Indira Sarangthem
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.02775

Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands
Cited by: 45
Author(s): Svetlana E. Belova, Nikolai V. Ravin, Т. А. Панкратов, Andrey L. Rakitin, Anastasia A. Ivanova, Alexey V. Beletsky, Andrey V. Mardanov, Jaap S. Sinninghe Damsté, Svetlana N. Dedysh
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.02586

Effect of Varying Nitrate Concentrations on Denitrifying Phosphorus Uptake by DPAOs With a Molecular Insight Into Pho Regulon Gene Expression
Cited by: 2
Author(s): Chandan Mukherjee, Rajojit Chowdhury, Mst. Momtaj Begam, Sayak Ganguli, Ritabrata Basak, Basab Chaudhuri, Krishna Ray
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.01611

Antimicrobial Susceptibility and Virulence of mcr-1-Positive Enterobacteriaceae in China, a Multicenter Longitudinal Epidemiological Study
Cited by: 8
Author(s): Bin Jiang, Pengcheng Du, Peng Jia, Enbo Liu, Timothy Kudinha, Hui Zhang, Dongxue Li, Yingchun Xu, Liangyi Xie, Qiwen Yang
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0200494

Integrative approach on Pharyngodonidae (Nematoda: Oxyuroidea) parasitic in reptiles: Relationship among its genera, importance of their diagnostic features, and new data on Parapharyngodon bainae
Cited by: 7
Author(s): Felipe B. Pereira, José L. Luque, Luiz Eduardo Roland Tavares
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.00325

Functional Characterization of Endophytic Fungal Community Associated with Oryza sativa L. and Zea mays L.
Cited by: 157
Author(s): Momota Potshangbam, Sarangthem Indira Devi, Dinabandhu Sahoo, Gary A. Strobel
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.573679

The Neuromodulator-Encoding sadA Gene Is Widely Distributed in the Human Skin Microbiome
Cited by: 7
Author(s): Arif Luqman, Susanne Zabel, Samane Rahmdel, Britta Merz, Nicole Gruenheit, Johannes Harter, Kay Nieselt, Friedrich Götz
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0039861

Enhanced Transformation of TNT by Arabidopsis Plants Expressing an Old Yellow Enzyme
Cited by: 17
Author(s): Bo Zhu, Ri‐He Peng, Xin Fu, Xin Jin, Zhao Wang, Jing Xu, Ho Jae Han, Jian‐Jie Gao, Zhihong Xu, Lin Bian, Qizheng Yao
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2021.663768

Staphylococcus saprophyticus From Clinical and Environmental Origins Have Distinct Biofilm Composition
Cited by: 11
Author(s): Opeyemi U Lawal, Martha Macêdo de Lima Barata, Maria João Fraqueza, Peder Worning, Mette Damkjær Bartels, Luísa Gonçalves, Paulo Paixão, Elsa Gonçalves, Cristina Toscano, Joanna Empel, Małgorzata Urbaś, Maria A. Domiìnguez, Henrik Westh, Hermı́nia de Lencastre, Maria Miragaia
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0210979

TLR4-interacting SPA4 peptide improves host defense and alleviates tissue injury in a mouse model of Pseudomonas aeruginosa lung infection
Cited by: 21
Author(s): Shanjana Awasthi, Bhupinder Singh, Vijay Ramani, Jun Xie, Stanley D. Kosanke
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.00349

Petrophilic, Fe(III) Reducing Exoelectrogen Citrobacter sp. KVM11, Isolated From Hydrocarbon Fed Microbial Electrochemical Remediation Systems
Cited by: 12
Author(s): Krishnaveni Venkidusamy, Ananda Rao Hari, Mallavarapu Megharaj
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.01662

Construction of a Shuttle Vector Using an Endogenous Plasmid From the Cyanobacterium Synechocystis sp. PCC6803
Cited by: 30
Author(s): Haojie Jin, Yan Wang, Adam Idoine, Devaki Bhaya
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0211061

Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers
Cited by: 28
Author(s): Manoj Kumar Yadav, S Aravindan, Umakanta Ngangkham, S. Raghu, S.R. Prabhukarthikeyan, U. Keerthana, Bishnu Charan Marndi, Totan Adak, Sushmita Munda, Rupesh Deshmukh, D. Pramesh, Sanghamitra Samantaray, Prakash Chandra Rath
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0130425

In-Depth Transcriptome Sequencing of Mexican Lime Trees Infected with Candidatus Phytoplasma aurantifolia
Cited by: 35
Author(s): Mohsen Mardi, Laleh Karimi Farsad, Javad Gharechahi, Ghasem Hosseini Salekdeh
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-70611-z

First characterization of the complete mitochondrial genome of fungal plant-pathogen Monilinia laxa which represents the mobile intron rich structure
Cited by: 9
Author(s): Gozde Yildiz, Hilal Özkılınç
Software Mentions: 1
Published: over 4 years ago

Projects: pypi: blast

Papers Mentioning blast 1,819