pypi: blast | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2018.00603

The Road to Infection: Host-Microbe Interactions Defining the Pathogenicity of Streptococcus bovis/Streptococcus equinus Complex Members
Cited by: 48
Author(s): Christoph Jans, Annemarie Boleij
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2012.00327

Molecular signatures for the PVC clade (Planctomycetes, Verrucomicrobia, Chlamydiae, and Lentisphaerae) of bacteria provide insights into their evolutionary relationships
Cited by: 31
Author(s): Radhey S. Gupta, Vaibhav Bhandari, Hafiz Sohail Naushad
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12917-021-02902-0

Molecular detection of Theileria species, Anaplasma species, Candidatus Mycoplasma haemobos, Trypanosoma evansi and first evidence of Theileria sinensis-associated bovine anaemia in crossbred Kedah-Kelantan x Brahman cattle
Cited by: 2
Author(s): Onyinyechukwu Ada Agina, Mohd Rosly Shaari, Nur Mahiza Md Isa, Mokrish Ajat, Mohd Zamri‐Saad, Mazlina Mazlan, Azim Salahuddin Muhamad, Afrah Alhana Kassim, Lee Chai Ha, Fairuz Hazwani Rusli, Darulmuqaamah Masaud, Hazilawati Hamzah
Software Mentions: 1
Published: over 4 years ago

10.1099/mgen.0.000482

Cryptic prophages within a Streptococcus pyogenes genotype emm4 lineage
Cited by: 7
Author(s): Alex Remmington, Samuel Haywood, Julia Edgar, Luke R. Green, Thushan I. de Silva, Claire E. Turner
Software Mentions: 1
Published: almost 5 years ago

10.1186/1472-6807-8-14

"Hot cores" in proteins: Comparative analysis of the apolar contact area in structures from hyper/thermophilic and mesophilic organisms
Cited by: 16
Author(s): Alessandro Paiardini, Riccardo Sali, Francesco Bossa, Stefano Pascarella
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-213X-14-32

Proteomic analysis of fibroblastema formation in regenerating hind limbs of Xenopus laevis froglets and comparison to axolotl
Cited by: 38
Author(s): Nandini Rao, Feifei Song, Deepali Jhamb, Mu Wang, Derek J. Milner, Nathaniel M Price, Teri L. Belecky-Adams, Mathew Palakal, Jo Ann Cameron, Bingbing Li, Xiaoping Chen, David L. Stocum
Software Mentions: 1
Published: over 11 years ago

10.1186/1756-0500-7-863

Genetic characterisation of influenza B viruses detected in Singapore, 2004 to 2009
Cited by: 5
Author(s): Muhammad Raihan Jumat, Richard J. Sugrue, Boon Huan Tan
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2020.608752

Functional and Genomic Characterization of Ligilactobacillus salivarius TUCO-L2 Isolated From Lama glama Milk: A Promising Immunobiotic Strain to Combat Infections
Cited by: 9
Author(s): Sandra Quilodrán-Vega, Leonardo Albarracín, Flavia I. Mansilla, Lorena Paola Arce, Bingwen Zhou, Aminul Islam, Mikado Tomokiyo, Imad Al Kassaa, Yoshihito Suda, Haruki Kitazawa, Julio Villena
Software Mentions: 1
Published: almost 5 years ago

10.1099/mgen.0.000202

Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association
Cited by: 17
Author(s): Scott V. Nguyen, Dayna M. Harhay, James L. Bono, Timothy P. L. Smith, Patricia I. Fields, Blake A. Dinsmore, Monica Santovenia, Rong Wang, Joseph M. Bosilevac, Gregory P. Harhay
Software Mentions: 1
Published: over 7 years ago

10.1186/1756-0500-5-144

ZmbZIP60 mRNA is spliced in maize in response to ER stress
Cited by: 56
Author(s): Yanjie Li, Sabrina Humbert, Stephen H. Howell
Software Mentions: 1
Published: over 13 years ago

10.1186/1756-0500-5-306

URPD: a specific product primer design tool
Cited by: 16
Author(s): Li‐Yeh Chuang, Yu-Huei Cheng, Cheng‐Hong Yang
Software Mentions: 1
Published: over 13 years ago

10.1099/mgen.0.000053

PhagePhisher: a pipeline for the discovery of covert viral sequences in complex genomic datasets
Cited by: 7
Author(s): Thomas Hatzopoulos, Siobhan C. Watkins, Catherine Putonti
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2016.00538

Identification and Characterization of a Cleavage Site in the Proteolysis of Orf Virus 086 Protein
Cited by: 3
Author(s): Xiaoping Wang, Bin Xiao, Jiafeng Zhang, Daxiang Chen, Wei Li, Ming Li, Wenbo Hao, Shuhong Luo
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2121-14-15

Identification and characterization of two distinct PPP1R2 isoforms in human spermatozoa
Cited by: 18
Author(s): Luís Korrodi‐Gregório, Mónica Ferreira, Ana Paula Vintém, Wenjuan Wu, Thorsten Müller, Katrin Marcus, Srinivasan Vijayaraghavan, David L. Brautigan, Edgar F. da Cruz e Silva, Margarida Fardilha, Edgar F. da Cruz e Silva
Software Mentions: 1
Published: over 12 years ago

10.1099/mgen.0.000233

The resistomes of six carbapenem-resistant pathogens – a critical genotype–phenotype analysis
Cited by: 16
Author(s): Anna Johnning, Nahid Karami, Erika Tång Hallbäck, Vilhelm Müller, Lena Nyberg, Mariana Buongermino Pereira, Callum Stewart, Tobias Ambjörnsson, Fredrik Westerlund, Ingegerd Adlerberth, Erik Kristiansson
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.00605

Membrane Sphingolipids Regulate the Fitness and Antifungal Protein Susceptibility of Neurospora crassa
Cited by: 21
Author(s): Anna Huber, Gregor Oemer, Nermina Malanovic, Karl Lohner, Laura Kovács, Willi Salvenmoser, Johannes Zschocke, Markus A. Keller, Florentine Marx
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-8-114

Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines
Cited by: 42
Author(s): Xiaomeng Ge, Wei‐Hua Chen, Shuhui Song, Weiwei Wang, Songnian Hu, Jun Yu
Software Mentions: 1
Published: almost 17 years ago

10.3389/fmicb.2018.02864

Purification, Characterization and in vitro Evaluation of Polymyxin A From Paenibacillus dendritiformis: An Underexplored Member of the Polymyxin Family
Cited by: 11
Author(s): Manoj Jangra, Harmandeep Kaur Randhawa, Manpreet Kaur, Anugya Srivastava, Navdezda Maurya, Prashant P. Patil, Pallavi Jaswal, Ashish Arora, Manoj Raje, Hemraj Nandanwar
Software Mentions: 1
Published: almost 7 years ago

10.1099/mgen.0.000274

Putative novel cps loci in a large global collection of pneumococci
Cited by: 10
Author(s): Andries J. van Tonder, Rebecca A. Gladstone, Stephanie Lo, Moon H. Nahm, Mignon du Plessis, Jennifer Cornick, Brenda Kwambana-Adams, Shabir A. Madhi, Paulina A. Hawkins, Rachel Benisty, Ron Dagan, Dean Everett, Martín Antonio, Keith P. Klugman, Anne von Gottberg, Robert F. Breiman, Lesley McGee, Stephen D. Bentley
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.01993

Development and Application of a Prophage Integrase Typing Scheme for Group B Streptococcus
Cited by: 12
Author(s): Chiara Crestani, Taya Forde, Ruth N. Zadoks
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.599562

Antigenic Evolution on a Global Scale Reveals the Potential Natural Selection of Severe Acute Respiratory Syndrome-Coronavirus 2 by Pre-existing Cross-Reactive T-Cell Immunity
Cited by: 4
Author(s): Chengdong Zhang, Xuanxuan Jin, Xianyang Chen, Li Qiu, Qibin Leng, Tianyi Qiu
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2229-10-55

A full-length enriched cDNA library and expressed sequence tag analysis of the parasitic weed, Striga hermonthica
Cited by: 37
Author(s): Satoko Yoshida, Juliane Karine Ishida, Nasrein Mohamed Kamal, Asif Ali, Susumu Namba, Ken Shirasu
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2229-10-249

An in silico analysis of the mitochondrial protein import apparatus of plants
Cited by: 57
Author(s): Chris Carrie, Monika W. Murcha, James Whelan
Software Mentions: 1
Published: almost 15 years ago

10.1099/mgen.0.000609

Phylogenomic disentangling of the Bifidobacterium longum subsp. infantis taxon
Cited by: 9
Author(s): Chiara Tarracchini, Christian Milani, Gabriele Andrea Lugli, Leonardo Mancabelli, Federico Fontana, Giulia Alessandri, Giulia Longhi, Rosaria Anzalone, Alice Viappiani, Francesca Turroni, Douwe van Sinderen, Marco Ventura
Software Mentions: 1
Published: over 4 years ago

10.1099/mgen.0.000564

Genomics reveals the novel species placement of industrial contaminant isolates incorrectly identified as Burkholderia lata
Cited by: 2
Author(s): Edward Cunningham-Oakes, Tom Pointon, Barry Murphy, Stuart Campbell-Lee, Gordon Webster, Thomas R. Connor, Eshwar Mahenthiralingam
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-015-1891-8

Phage display screening identifies a novel peptide to suppress ovarian cancer cells in vitro and in vivo in mouse models
Cited by: 16
Author(s): Cong Zhou, Jiali Kang, Xiaoxia Wang, Wei Wei, Wenyan Jiang
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13568-021-01237-1

Seed biostimulant Bacillus sp. MGW9 improves the salt tolerance of maize during seed germination
Cited by: 13
Author(s): Heqin Li, Haiwang Yue, Li Li, Yu Li, Haiyan Zhang, Jianhua Wang, Xuwen Jiang
Software Mentions: 1
Published: over 4 years ago

10.1099/mgen.0.000143

Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26
Cited by: 51
Author(s): Cameron J. Reid, Ethan R. Wyrsch, Piklu Roy Chowdhury, Tiziana Zingali, Mengmeng Liu, Aaron E. Darling, Toni A. Chapman, Steven P. Djordjevic
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-017-1060-0

Differential proteomic analysis of replanted Rehmannia glutinosa roots by iTRAQ reveals molecular mechanisms for formation of replant disease
Cited by: 28
Author(s): Mingjie Li, Yanhui Yang, Fan Feng, Zhenan Bao, Shuqiang Chen, Chuyun Yang, Li Gu, Fengqing Wang, Jun‐Yi Zhang, Aiguo Chen, Wenxiong Lin, Xinjian Chen, Zhongyi Zhang
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2407-6-8

The monoclonal antibody SM5-1 recognizes a fibronectin variant which is widely expressed in melanoma
Cited by: 12
Author(s): Uwe Trefzer, Yingwen Chen, Gunda Herberth, Maja Hofmann, Felix Kiecker, Yajun Guo, Wolfram Sterry
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2229-7-66

Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response
Cited by: 94
Author(s): Tetsuya Sakurai, Germán Plata, Fausto Rodríguez-Zapata, Motoaki Seki, Andrés Salcedo, Atsushi Toyoda, Atsushi Ishiwata, Joe Tohmé, Yoshiyuki Sakaki, Kazuo Shinozaki, Manabu Ishitani
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12870-018-1369-3

MITE insertion-dependent expression of CitRKD1 with a RWP-RK domain regulates somatic embryogenesis in citrus nucellar tissues
Cited by: 33
Author(s): Takehiko Shimada, Tetsuro Endo, Hiroshi Fujii, Michiharu Nakano, Aiko Sugiyama, Genya Daido, Satoshi Ohta, Terutaka Yoshioka, Mitsuo Omura
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-018-1598-5

Enhanced Nicotiana benthamiana immune responses caused by heterologous plant genes from Pinellia ternata
Cited by: 6
Author(s): Hafiz Muhammad Khalid Abbas, Jingshu Xiang, Zahoor Ahmad, Lilin Wang, Wubei Dong
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-018-1545-5

Genome-wide analysis of cotton GH3 subfamily II reveals functional divergence in fiber development, hormone response and plant architecture
Cited by: 33
Author(s): Daoqian Yu, Ghulam Qanmber, Lili Lu, Lingling Wang, Jie Li, Zhaoen Yang, Zhao Liu, Yi Li, Quanjia Chen, Venugopal Mendu, Fuguang Li, Zuoren Yang
Software Mentions: 1
Published: almost 7 years ago

10.1007/s13205-016-0568-6

Molecular detection and pathogenicity of a nucleopolyhedrovirus isolated from looper caterpillar (Hyposidra talaca), a tea pest
Cited by: 2
Author(s): Soma Dasgupta, Hijam Ranjit Singh, Sudripta Das, Sunil Pathak, Rakesh Kumar Bhola
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2017.01990

Involvement of NpdA, a Putative 2-Nitropropane Dioxygenase, in the T3SS Expression and Full Virulence in Ralstonia solanacearum OE1-1
Cited by: 6
Author(s): Weiqi Zhang, Jing Li, Yu Tang, Kai Chen, Xiaojun Shi, Kouhei Ohnishi, Yong Zhang
Software Mentions: 1
Published: about 8 years ago

10.1186/s12870-020-02623-w

Overexpression of MaTPD1A impairs fruit and pollen development by modulating some regulators in Musa itinerans
Cited by: 4
Author(s): Chunhua Hu, Ou Sheng, Tingting Dong, Qiaosong Yang, Tongxin Dou, Chunyu Li, Wei He, Hongyuan Gao, Ganjun Yi, Guiming Deng, Fangcheng Bi
Software Mentions: 1
Published: about 5 years ago

10.1099/mgen.0.000372

Identification of integrative and conjugative elements in pathogenic and commensal Neisseriaceae species via genomic distributions of DNA uptake sequence dialects
Cited by: 1
Author(s): Alex Hughes-Games, Adam P. Roberts, Sean A. Davis, David J. Hill
Software Mentions: 1
Published: over 5 years ago

10.1099/mgen.0.000411

Comparative genomic insights into Yersinia hibernica – a commonly misidentified Yersinia enterocolitica-like organism
Cited by: 0
Author(s): Scott V. Nguyen, Dechamma Mundanda Muthappa, Athmanya K. Eshwar, J. J. C. Buckley, Brenda Murphy, Roger Stephan, Angelika Lehner, Séamus Fanning
Software Mentions: 1
Published: about 5 years ago

10.1186/s12870-015-0497-2

No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes
Cited by: 14
Author(s): Bruno Aguiar, Jorge Vieira, Ana Cunha, Cristina Vieira
Software Mentions: 1
Published: over 10 years ago

10.1099/mgen.0.000328

DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing
Cited by: 0
Author(s): Catarina Mendes, Erley F. Lizarazo, Miguel P. Machado, Diogo N. Silva, Adriana Tami, Mário Ramirez, Natacha Couto, John W. A. Rossen, João André Carriço
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-016-0738-z

Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus
Cited by: 37
Author(s): Houmiao Wang, Yong Lei, Ling‐Shu Wan, Liying Yan, Jianwei Lv, Xiaofeng Dai, Xiaoping Ren, Wanshou Guo, Huifang Jiang, Boshou Liao
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2014.00504

Human herpesviruses-encoded dUTPases: a family of proteins that modulate dendritic cell function and innate immunity
Cited by: 29
Author(s): Maria E. Ariza, Ronald Glaser, Marshall V. Williams
Software Mentions: 1
Published: about 11 years ago

10.1186/1741-7007-7-53

Control of chicken CR1 retrotransposons is independent of Dicer-mediated RNA interference pathway
Cited by: 16
Author(s): Sunghun Lee, Preethi Eldi, Soo Young Cho, Danny Rangasamy
Software Mentions: 1
Published: about 16 years ago

10.1002/mbo3.175

Algae–bacteria association inferred by 16S <scp>rDNA</scp> similarity in established microalgae cultures
Cited by: 29
Author(s): Dagmar Schwenk, Liisa Nohynek, Heiko Rischer
Software Mentions: 1
Published: over 11 years ago

10.1002/mbo3.742

Selecting lipopeptide‐producing, Fusarium‐ suppressing Bacillus spp.: Metabolomic and genomic probing of Bacillus velezensis NWUMFkBS10.5
Cited by: 28
Author(s): Adetomiwa Ayodele Adeniji, Oluwole Samuel Aremu, Olubukola Oluranti Babalola
Software Mentions: 1
Published: about 7 years ago

10.1002/mbo3.382

Isolation of Bdellovibrio sp. from soil samples in Mexico and their potential applications in control of pathogens
Cited by: 22
Author(s): Omotayo Opemipo Oyedara, Erick de Jesús de Luna-Santillana, Omar Olguín-Rodríguez, Xianwu Guo, Marco Antonio Mendoza-Villa, Jorge Luis Menchaca-Arredondo, Temidayo Oluyomi Elufisan, Javier A. Garza‐Hernández, Israel García-León, Mario A. Rodríguez Pérez
Software Mentions: 1
Published: over 9 years ago

10.1099/mic.0.058206-0

Molecular characterization of a novel mosaic tet(S/M) gene encoding tetracycline resistance in foodborne strains of Streptococcus bovis
Cited by: 20
Author(s): Simona N. Barile, Chiara Devirgiliis, Giuditta Perozzi
Software Mentions: 1
Published: about 13 years ago

10.1099/mic.0.046862-0

Interaction of Bacteroides fragilis and Bacteroides thetaiotaomicron with the kallikrein–kinin system
Cited by: 28
Author(s): Elizabeth C. Murphy, Matthias Mörgelin, Jakki C. Cooney, Inga-Maria Frick
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-10-197

Genome-scale identification of Soybean BURP domain-containing genes and their expression under stress treatments
Cited by: 56
Author(s): Xu Hua, Yaxuan Li, Yueming Yan, Ke Wang, Gao Ya, Yingkao Hu
Software Mentions: 1
Published: about 15 years ago

10.1099/mic.0.001003

Tn1 transposition in the course of natural transformation enables horizontal antibiotic resistance spread in Acinetobacter baylyi
Cited by: 7
Author(s): Julia Maria Kloos, Pål Jarle Johnsen, Klaus Harms
Software Mentions: 1
Published: almost 5 years ago

10.1099/mic.0.067280-0

Characterization of genes required for the pathogenicity of Pectobacterium carotovorum subsp. carotovorum Pcc21 in Chinese cabbage
Cited by: 58
Author(s): Dong Hwan Lee, Joong‐Soo Lim, Juneok Lee, Eunjung Roh, Kyu-Suk Jung, Mansoo Choi, Chang‐Sik Oh, Sangryeol Ryu, Jong‐Chul Yun, Sunggi Heu
Software Mentions: 1
Published: over 12 years ago

10.1099/acmi.0.000095

Principal component analysis exploring the association between antibiotic resistance and heavy metal tolerance of plasmid-bearing sewage wastewater bacteria of clinical relevance
Cited by: 9
Author(s): Manisha Mandal, Saumendra Nath Das, Shyamapada Mandal
Software Mentions: 1
Published: over 5 years ago

10.1099/mic.0.000963

Activation of a [NiFe]-hydrogenase-4 isoenzyme by maturation proteases
Cited by: 3
Author(s): Alexander J. Finney, Grant Buchanan, Tracy Palmer, Sarah J. Coulthurst, Frank Sargent
Software Mentions: 1
Published: about 5 years ago

10.1099/mic.0.040147-0

The ham-5, rcm-1 and rco-1 genes regulate hyphal fusion in Neurospora crassa
Cited by: 44
Author(s): Mash'el Salman Aldabbous, M. Gabriela Roca, Angela Stout, I-Ching Huang, Nick D. Read, Stephen J. Free
Software Mentions: 1
Published: about 15 years ago

10.1186/s12915-014-0078-0

Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets
Cited by: 423
Author(s): Pankaj Kumar, Jordan Anaya, Suresh B. Mudunuri, Anindya Dutta
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms21020656

Comprehensive Analyses of Cytochrome P450 Monooxygenases and Secondary Metabolite Biosynthetic Gene Clusters in Cyanobacteria
Cited by: 19
Author(s): Makhosazana Jabulile Khumalo, Nomfundo Nzuza, Tiara Padayachee, Wanping Chen, Jae‐Hyuk Yu, David R. Nelson, Khajamohiddin Syed
Software Mentions: 1
Published: almost 6 years ago

10.1099/mic.0.000280

Dissecting the role of histidine kinase and HOG1 mitogen-activated protein kinase signalling in stress tolerance and pathogenicity of Parastagonospora nodorum on wheat
Cited by: 8
Author(s): Evan John, Francisco J. López-Ruiz, Kasia Rybak, Carl J. Mousley, Richard P. Oliver, Kar‐Chun Tan
Software Mentions: 1
Published: over 9 years ago

10.1099/mic.0.000100

Characterization of a bifidobacterial system that utilizes galacto-oligosaccharides
Cited by: 17
Author(s): Akira Shigehisa, Hidetsugu Sotoya, Takashi Sato, Takeo Hara, Hoshitaka Matsumoto, Takahiro Matsuki
Software Mentions: 1
Published: over 10 years ago

10.1099/mic.0.042978-0

Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis
Cited by: 62
Author(s): Sheila Patrick, Garry W. Blakely, Stanley Houston, Jane Moore, Valerie R. Abratt, Marcelo Bertalan, Ana Cerdeño-Tárraga, Michael A. Quail, Nicola Corton, Craig Corton, Alexandra Bignell, Andrew R. Barron, Louise Clark, Stephen D. Bentley, Julian Parkhill
Software Mentions: 1
Published: about 15 years ago

10.1099/mic.0.083386-0

A quinol oxidase, encoded by cyoABCD, is utilized to adapt to lower O2 concentrations in Rhizobium etli CFN42
Cited by: 11
Author(s): Zachary Ryan Lunak, K. Dale Noel
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2021.676113

First Report of Coexistence of blaSFO–1 and blaNDM–1 β-Lactamase Genes as Well as Colistin Resistance Gene mcr-9 in a Transferrable Plasmid of a Clinical Isolate of Enterobacter hormaechei
Cited by: 12
Author(s): Wenxiu Ai, Ying Zhou, Bingjie Wang, Qing Zhan, Longhua Hu, Yanling Xu, Yinjuan Guo, Liangxing Wang, Fangyou Yu, Xiaolong Li
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-020-02781-x

Genome-wide identification and characterization of small auxin-up RNA (SAUR) gene family in plants: evolution and expression profiles during normal growth and stress response
Cited by: 21
Author(s): Hao Zhang, Yu Zhou, Xiaodie Yao, Jingli Chen, Xing Chen, Huiwen Zhou, Yuxia Lou, Feng Ming, Yue Jin
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2105-15-S7-S6

Mitochondrial genomic variation associated with higher mitochondrial copy number: the Cache County Study on Memory Health and Aging
Cited by: 15
Author(s): Perry G. Ridge, Taylor J. Maxwell, Spencer J Foutz, Matthew H. Bailey, Christopher Corcoran, JoAnn T. Tschanz, Maria C. Norton, Ronald G. Munger, Elizabeth O’Brien, Richard A. Kerber, Richard M. Cawthon, John Kauwe
Software Mentions: 1
Published: over 11 years ago

10.1128/MRA.00906-18

Draft Genome Sequence of Pseudomonas citronellolis LA18T, a Bacterium That Uses Levulinic Acid
Cited by: 3
Author(s): Tomohiro Inaba, Yuya Sato, Hideaki Koike, Tomoyuki Hori, Manabu Kanno, Nobutada Kimura, Kohtaro Kirimura, Hiroshi Habe
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2229-12-105

Local and systemic changes in expression of resistance genes, nb-lrr genes and their putative microRNAs in norway spruce after wounding and inoculation with the pathogen ceratocystis polonica
Cited by: 26
Author(s): Carl Gunnar Fossdal, Nadeem Yaqoob, Paal Krokene, Harald Kvaalen, Halvor Solheim, Igor Yakovlev
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2229-7-36

Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa
Cited by: 62
Author(s): Torben Asp, Ursula Frei, Thomas Didion, Kristian Nielsen, Thomas Lübberstedt
Software Mentions: 1
Published: almost 19 years ago

10.3389/fmicb.2019.02565

Root-Colonizing Endophytic Fungi of the Dominant Grass Stipa krylovii From a Mongolian Steppe Grassland
Cited by: 22
Author(s): Dániel G. Knapp, Ildikó Imrefi, Enkhtuul Boldpurev, Sándor Csíkos, Galiya Akhmetova, Péter János Berek-Nagy, Burenjargal Otgonsuren, Gábor M. Kovács
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40168-020-00973-z

Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including SARS-CoV-2
Cited by: 17
Author(s): Claudia Wylezich, Sten Calvelage, Kore Schlottau, Ute Ziegler, Anne Pohlmann, Dirk W. Höper, Martin Beer
Software Mentions: 1
Published: over 4 years ago

10.1186/s40168-019-0746-y

Commensal-derived metabolites govern Vibrio cholerae pathogenesis in host intestine
Cited by: 44
Author(s): Jin Sun You, Ji Hyun Yong, Gwang‐Hee Kim, Sungmin Moon, Ki Taek Nam, Ji Hwan Ryu, Mi Young Yoon, Sang Sun Yoon
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms7070188

Viability and Composition Validation of Commercial Probiotic Products by Selective Culturing Combined with Next-Generation Sequencing
Cited by: 20
Author(s): Mati Ullah, Ali Raza, Ye Li, Yinian Zhu
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.02700

Novel Isoprene-Degrading Proteobacteria From Soil and Leaves Identified by Cultivation and Metagenomics Analysis of Stable Isotope Probing Experiments
Cited by: 27
Author(s): Nasmille L Larke-Mejía, Andrew T. Crombie, Jennifer Pratscher, Terry J. McGenity, J. Colin Murrell
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms8071055

Multidrug-Resistant Streptococcus agalactiae Strains Found in Human and Fish with High Penicillin and Cefotaxime Non-Susceptibilities
Cited by: 12
Author(s): Carmen Li, Dulmini Nanayakkara Sapugahawatte, Ying Yang, Kin Fai Ellick Wong, Norman Lo, Margaret Ip
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2229-12-65

Comparative analyses reveal potential uses of Brachypodium distachyonas a model for cold stress responses in temperate grasses
Cited by: 52
Author(s): Chuan Li, Heidi Rudi, Eric J. Stockinger, Hongmei Cheng, Mengji Cao, Samuel E. Fox, Todd C. Mockler, Bjørge Westereng, Siri Fjellheim, Odd Arne Rognli, Simen Rød Sandve
Software Mentions: 1
Published: over 13 years ago

10.1186/s12870-018-1470-7

Two virulent sRNAs identified by genomic sequencing target the type III secretion system in rice bacterial blight pathogen
Cited by: 7
Author(s): Yiqun Hu, Liyuan Zhang, Xuan Wang, Fengli Sun, Xiangxin Kong, Hansong Dong, Heng Xu
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.01573

Kinetics of Phenol Biodegradation by Heavy Metal Tolerant Rhizobacteria Glutamicibacter nicotianae MSSRFPD35 From Distillery Effluent Contaminated Soils
Cited by: 31
Author(s): Purushothaman Duraisamy, Jegan Sekar, Anu D. Arunkumar, V. R. Prabavathy
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-018-1231-7

The walnut JrVHAG1 gene is involved in cadmium stress response through ABA-signal pathway and MYB transcription regulation
Cited by: 43
Author(s): Zhenggang Xu, Ge Yu, Wan Zhang, Yunlin Zhao, Guiyan Yang
Software Mentions: 1
Published: almost 8 years ago

10.3390/microorganisms8010136

Waddlia chondrophila and Male Infertility
Cited by: 6
Author(s): David Baud, Nicolas Vulliemoz, Maria Verónica Morales Zapata, Gilbert Greub, Manon Vouga, Miloš Stojanov
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2229-13-128

Functional characterization of a serine-threonine protein kinase from Bambusa balcooathat implicates in cellulose overproduction and superior quality fiber formation
Cited by: 14
Author(s): Jayadri Sekhar Ghosh, Shubho Chaudhuri, Nrisingha Dey, Amita Pal
Software Mentions: 1
Published: about 12 years ago

10.3390/microorganisms8020237

Identification and Heterologous Expression of the Albucidin Gene Cluster from the Marine Strain Streptomyces Albus Subsp. Chlorinus NRRL B-24108
Cited by: 17
Author(s): Maksym Myronovskyi, Birgit Rosenkränzer, Marc Stierhof, Lutz Petzke, Tobias Seiser, Andriy Luzhetskyy
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-020-02439-8

Transcriptome analysis of lateral buds from Phyllostachys edulis rhizome during germination and early shoot stages
Cited by: 17
Author(s): Yuting Shou, Jinyuan Chen, Yulong Ding
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9091916

Phytopythium vexans Associated with Apple and Pear Decline in the Saïss Plain of Morocco
Cited by: 7
Author(s): Salma Jabiri, Chaimaa Bahra, Dustin E. MacLean, Nabil Radouane, Essaïd Ait Barka, Mohammed Bendriss Amraoui, Rachid Lahlali
Software Mentions: 1
Published: about 4 years ago

10.3390/microorganisms9040763

Comparative Analysis of the Apple Root Transcriptome as Affected by Rootstock Genotype and Brassicaceae Seed Meal Soil Amendment: Implications for Plant Health
Cited by: 2
Author(s): Likun Wang, Tracey S. Somera, Heidi Hargarten, Loren Honaas, Mark Mazzola
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms8111647

Efflux Pump-Driven Antibiotic and Biocide Cross-Resistance in Pseudomonas aeruginosa Isolated from Different Ecological Niches: A Case Study in the Development of Multidrug Resistance in Environmental Hotspots
Cited by: 48
Author(s): Anteneh Amsalu, Sylvia A. Sapula, Miguel de Barros Lopes, Bradley J. Hart, Anh H. Nguyen, Barbara Drigo, John Turnidge, Lex Leong, Henrietta Venter
Software Mentions: 1
Published: about 5 years ago

10.1080/23802359.2020.1768912

The complete mitochondrial genome of blue pansy, Junonia orithya (Lepidoptera: Nymphalidae: Nymphalinae) from Pakistan
Cited by: 2
Author(s): Saira Bibi, Muhammad Fiaz Khan, Aqsa Rehman, Muzafar Shah, Faisal Nouroz, Aneesa Nayab
Software Mentions: 1
Published: over 5 years ago

10.1080/23802359.2020.1788431

Characterization of the complete chloroplast genome of Cucun mismelo L. var. Agrestis Naud
Cited by: 2
Author(s): Linchong Hui, Wei Xu, Wei Chen, Zhou ZhenLing, Jingfang Li, Teng Ma, Shida Feng, Yan Xu, Tongli Zhao, Haifeng Yang
Software Mentions: 1
Published: over 5 years ago

10.1080/23802359.2019.1666681

Identification of the original species of cubilose based on DNA barcode
Cited by: 0
Author(s): Shasha Wang, Jianbin Guo, Fanfan Hou
Software Mentions: 1
Published: over 6 years ago

10.1080/23802359.2021.1945968

The complete chloroplast genome of Epilobium hirsutum L. (Onagraceae)
Cited by: 2
Author(s): Fancheng Meng, Weimin Jiang, Liping Wu, Jing Zhang, Xiaoyan Yao, Jing Wu, Xiaohu Guo, Shihai Xing
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2016.00792

Comparative Analysis of Genomics and Proteomics in the New Isolated Bacillus thuringiensis X022 Revealed the Metabolic Regulation Mechanism of Carbon Flux Following Cu2+ Treatment
Cited by: 9
Author(s): Meifang Quan, Junyan Xie, Xuemei Liu, Yang Li, Jie Rang, Tong Zhang, Fengjuan Zhou, Liqiu Xia, Shengbiao Hu, Yunjun Sun, Xuezhi Ding
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-9-36

Universal seeds for cDNA-to-genome comparison
Cited by: 13
Author(s): Leming Zhou, Jonathan Stanton, Liliana Florea
Software Mentions: 1
Published: almost 18 years ago

10.3389/fmicb.2016.01757

Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics
Cited by: 10
Author(s): Roger Karlsson, Kaisa Thorell, Shaghayegh Hosseini, Diarmuid T. Kenny, Carina Sihlbom, Åsa Sjöling, Anders Karlsson, Intawat Nookaew
Software Mentions: 1
Published: almost 9 years ago

10.1080/23802359.2021.1966341

The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.)
Cited by: 2
Author(s): Dengkui Shao, Yidong Ma, Xiaojuan Li, Sang Ga, Yudong Ren
Software Mentions: 1
Published: about 4 years ago

10.1080/23802359.2018.1502635

Complete chloroplast genome sequences of two Boehmeria species (Urticaceae)
Cited by: 2
Author(s): Zeng-Yuan Wu, Xin Du, Richard I. Milne, Jie Liu, Li D
Software Mentions: 1
Published: over 7 years ago

10.1099/acmi.0.000040

Infective endocarditis caused by Cardiobacterium valvarum
Cited by: 0
Author(s): Yohei Washio, Shun–ichiro Sakamoto, Ryoichi Saito, Takahito Nei, Masayo Morishima, Akihiro Shinoyama, Ayaka Tashiro, Ryoji Sugimoto
Software Mentions: 1
Published: about 6 years ago

10.1080/23802359.2017.1390420

Characterization of the complete chloroplast genome sequence of Cecropia pachystachya
Cited by: 4
Author(s): Zeng-Yuan Wu, Xin Du, Richard I. Milne, Jie Liu, Li D
Software Mentions: 1
Published: about 8 years ago

10.1080/23802359.2018.1462116

The complete mitochondrial genome of Sanghuangporus sanghuang (Hymenochaetaceae, Basidiomycota)
Cited by: 10
Author(s): Jae-Gu Han, Jeill Oh, Jong Won Jo, Changsun Kim, Young-Nam Kwag, Sang-Kuk Han, Gi‐Ho Sung
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2202-10-86

c-MycERTAM transgene silencing in a genetically modified human neural stem cell line implanted into MCAo rodent brain
Cited by: 35
Author(s): Lara Stevanato, Randolph Corteling, Paul Stroemer, Andrew Hope, JM Heward, Erik Miljan, John D. Sinden
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-14-118

Effects of using coding potential, sequence conservation and mRNA structure conservation for predicting pyrrolysine containing genes
Cited by: 3
Author(s): Christian Theil Have, Sine Zambach, Henning Christiansen
Software Mentions: 1
Published: over 12 years ago

10.1093/molbev/msaa060

Evolution of an Amniote-Specific Mechanism for Modulating Ubiquitin Signaling via Phosphoregulation of the E2 Enzyme UBE2D3
Cited by: 2
Author(s): Mónica Román-Trufero, Constance M Ito, Conrado Pedebos, Indiana Magdalou, Yi Fang Wang, Mehdi Karimi, Benjamin Moyon, Zoë Webster, Aida Di Gregorio, Véronique Azuara, Syma Khalid, Christian Speck, Tristan A. Rodríguez, Niall Dillon
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2199-11-98

Characterization, phylogeny, alternative splicing and expression of Sox30 gene
Cited by: 49
Author(s): Fangfang Han, Zhijian Wang, Fengrui Wu, Zhihao Liu, Biao Huang, Deshou Wang
Software Mentions: 1
Published: almost 15 years ago

Projects: pypi: blast

Enhanced Analysis

Science Score: 65/100

Bonuses:

Penalties:

Papers Mentioning blast 1,819