pypi: blast | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0057233

Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing
Cited by: 95
Author(s): Runxuan Zhang, David Marshall, Glenn J. Bryan, Csaba Hornyik
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0098357

Echinococcus P29 Antigen: Molecular Characterization and Implication on Post-Surgery Follow-Up of CE Patients Infected with Different Species of the Echinococcus granulosus Complex
Cited by: 28
Author(s): Ghalia Boubaker, Bruno Gottstein, Andrew Hemphill, Hamouda Babba, Markus Spiliotis
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0022014

Cytochrome c-554 from Methylosinus trichosporium OB3b; a Protein That Belongs to the Cytochrome c2 Family and Exhibits a HALS-Type EPR Signal
Cited by: 6
Author(s): Espen Harbitz, Karin Andersson
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0085491

Comparative Genome Analysis of Campylobacter fetus Subspecies Revealed Horizontally Acquired Genetic Elements Important for Virulence and Niche Specificity
Cited by: 32
Author(s): Sabine Kienesberger, Hanna Sprenger, Stella Wolfgruber, Bettina Halwachs, Gerhard G. Thallinger, Guillermo I. Perez-Perez, Martin J. Blaser, Ellen L. Zechner, Gregor Gorkiewicz
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0196979

RNAi screening of subtracted transcriptomes reveals tumor suppression by taurine-activated GABAA receptors involved in volume regulation
Cited by: 0
Author(s): Camiel L C Wielders, Pim van Nierop, Tinke L. Vormer, Floris Foijer, Joanne Verheij, J.C. Lodder, Jesper B. Andersen, Huibert D. Mansvelder, Hein te Riele
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0059592

Short-Term In-Vitro Expansion Improves Monitoring and Allows Affordable Generation of Virus-Specific T-Cells against Several Viruses for a Broad Clinical Application
Cited by: 34
Author(s): René Geyeregger, Christine Freimüller, Stefan Stevanović, Julia Stemberger, Gabor Mester, Jasmin Dmytrus, Thomas Lion, Hans‐Georg Rammensee, Gottfried Fischer, Britta Eiz‐Vesper, Anita Lawitschka, Susanne Matthes, Gerhard Fritsch
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0053276

Analysis of Virion-Incorporated Host Proteins Required for Herpes Simplex Virus Type 1 Infection through a RNA Interference Screen
Cited by: 52
Author(s): Camille Stegen, Yordanka Yakova, Daniel Henaff, Julien Nadjar, Johanne Duron, Roger Lippé
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0058251

Prolonged High Fat Diet Reduces Dopamine Reuptake without Altering DAT Gene Expression
Cited by: 90
Author(s): Jackson J. Cone, Elena H. Chartoff, David N. Potter, Stephanie Ebner, Mitchell F. Roitman
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0157558

Genome-Wide Identification and Expression Analysis of WRKY Transcription Factors under Multiple Stresses in Brassica napus
Cited by: 58
Author(s): Ying He, Shaoshuai Mao, Yulong Gao, Liying Zhu, Daoming Wu, Yixin Cui, Jiana Li, Wei Qian
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0113692

The Odorant Receptor Co-Receptor from the Bed Bug, Cimex lectularius L
Cited by: 19
Author(s): Immo A. Hansen, Stacy D. Rodriguez, Lisa L. Drake, David Price, Brittny N. Blakely, John I. Hammond, Hitoshi Tsujimoto, Erika Y. Monroy, William A. Maio, Alvaro Romero
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0042546

De Novo Sequencing and Transcriptome Analysis of the Central Nervous System of Mollusc Lymnaea stagnalis by Deep RNA Sequencing
Cited by: 90
Author(s): Hisayo Sadamoto, Hironobu Takahashi, Taketo Okada, Hiromichi Kenmoku, Masao Toyota, Yoshinori Asakawa
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0102869

Pattern Triggered Immunity (PTI) in Tobacco: Isolation of Activated Genes Suggests Role of the Phenylpropanoid Pathway in Inhibition of Bacterial Pathogens
Cited by: 15
Author(s): Ágnes Szatmári, Ágnes Zvara, Ágnes M. Móricz, E. Besenyei, Edit Szabó, Péter G. Ott, László G. Puskás, Zoltán Bozsó
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0077619

Melanotic Pathology and Vertical Transmission of the Gut Commensal Elizabethkingia meningoseptica in the Major Malaria Vector Anopheles gambiae
Cited by: 29
Author(s): Idir Akhouayri, Tibebu Habtewold, George K. Christophides
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0025702

Mainstreams of Horizontal Gene Exchange in Enterobacteria: Consideration of the Outbreak of Enterohemorrhagic E. coli O104:H4 in Germany in 2011
Cited by: 35
Author(s): Oliver Bezuidt, Rian Pierneef, Kingdom Mncube, Gipsi Lima‐Mendez, Oleg N. Reva
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0034231

The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight
Cited by: 52
Author(s): Juan Li, Huangwei Chu, Yonghong Zhang, Tongmin Mou, Changyin Wu, Qifa Zhang, Jian Xu
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0152927

Identification of Multiple Stress Responsive Genes by Sequencing a Normalized cDNA Library from Sea-Land Cotton (Gossypium barbadense L.)
Cited by: 32
Author(s): Bin Zhou, Lin Zhang, Abid Ullah, Xin Jin, Xiyan Yang, Xianlong Zhang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0135868

Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula
Cited by: 118
Author(s): Jeff S. Bowman, Hugh W. Ducklow
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0006097

Boule Is Present in Fish and Bisexually Expressed in Adult and Embryonic Germ Cells of Medaka
Cited by: 76
Author(s): Hongyan Xu, Zhendong Li, Mingyou Li, Li Wang, Yunhan Hong
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0066370

Rapidly Evolving Genes and Stress Adaptation of Two Desert Poplars, Populus euphratica and P. pruinosa
Cited by: 38
Author(s): Jian Zhang, Penghui Xie, Martin Lascoux, Thomas R. Meagher, Jianquan Liu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0109738

Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation
Cited by: 41
Author(s): Konstantinos Billis, Maria Billini, H. James Tripp, Nikos C. Kyrpides, Konstantinos Mavromatis
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0062892

The Impact of Paralogy on Phylogenomic Studies – A Case Study on Annelid Relationships
Cited by: 51
Author(s): Torsten H. Struck
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0169777

Characterization and Functional Analysis of Five MADS-Box B Class Genes Related to Floral Organ Identification in Tagetes erecta
Cited by: 15
Author(s): Ye Ai, Chunyu Zhang, Yalin Sun, Weining Wang, Yan‐Hong He, Manzhu Bao
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0008441

Switch Region for Pathogenic Structural Change in Conformational Disease and Its Prediction
Cited by: 7
Author(s): Xin Liu, Ya-Pu Zhao
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0078454

Autologous Antibody Capture to Enrich Immunogenic Viruses for Viral Discovery
Cited by: 16
Author(s): Bas B. Oude Munnink, Seyed Mohammad Jazaeri Farsani, Martin Deijs, J. F. J. Jonkers, Joost T. P. Verhoeven, Margareta Ieven, Herman Goossens, Menno D. de Jong, Ben Berkhout, Katherine Loens, Paul Kellam, Margreet Bakker, Marta Canuti, Matthew Cotten, Lia van der Hoek
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0201620

Anthracene biodegradation capacity of newly isolated rhizospheric bacteria Bacillus cereus S13
Cited by: 22
Author(s): Nadia Bibi, Muhammad Hamayun, Shaukat Khan, Amjad Iqbal, Badshah Islam, Farooq Shah, Muhammad Aaqil Khan, In‐Jung Lee
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0154061

Biochar, Bentonite and Zeolite Supplemented Feeding of Layer Chickens Alters Intestinal Microbiota and Reduces Campylobacter Load
Cited by: 54
Author(s): Tanka P. Prasai, Kerry B. Walsh, Surya P. Bhattarai, David J. Midmore, Thi Thu Hao Van, Robert J. Moore, Dragana Stanley
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0038809

Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates
Cited by: 13
Author(s): Mari Espelund, Marianne A. Minge, Tove M. Gabrielsen, Alexander J. Nederbragt, Kamran Shalchian-Tabrizi, Christian Otis, Monique Turmel, Claude Lemieux, Kjetill S. Jakobsen
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0117342

Transcriptome Sequencing of Codonopsis pilosula and Identification of Candidate Genes Involved in Polysaccharide Biosynthesis
Cited by: 33
Author(s): Jian Gao, Dong Wang, Ling Cao, Huifeng Sun
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0047275

Colinearity and Similar Expression Pattern of Rice DREB1s Reveal Their Functional Conservation in the Cold-Responsive Pathway
Cited by: 76
Author(s): Donghai Mao, Caiyan Chen
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0121525

Cytosolic 5’-Nucleotidase II Interacts with the Leucin Rich Repeat of NLR Family Member Ipaf
Cited by: 17
Author(s): Federico Cividini, Maria Grazia Tozzi, Alvaro Galli, Rossana Pesi, Marcella Camici, Charles Dumontet, Lars Petter Jordheim, Simone Allegrini
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0096242

A Role of Rab29 in the Integrity of the Trans-Golgi Network and Retrograde Trafficking of Mannose-6-Phosphate Receptor
Cited by: 64
Author(s): Shicong Wang, Zexu Ma, Xiaohui Xu, Zhen Wang, Lixiang Sun, Yunhe Zhou, Xue Lin, Wanjin Hong, Tuanlao Wang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0185830

A combined transcriptome and proteome analysis extends the allergome of house dust mite Dermatophagoides species
Cited by: 27
Author(s): Véronique Bordas‐Le Floch, Maxime Le Mignon, Lætitia Bussières, K. Jain, Armelle Martelet, Véronique Baron‐Bodo, Emmanuel Nony, Laurent Mascarell, Philippe Moingeon
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0115436

Molecular Evidence that Only Two Opsin Subfamilies, the Blue Light- (SWS2) and Green Light-Sensitive (RH2), Drive Color Vision in Atlantic Cod (Gadus morhua)
Cited by: 19
Author(s): Ragnhild Valen, Rolf B. Edvardsen, Anne Mette Søviknes, Øyvind Drivenes, Jon Vidar Helvik
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0069890

Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags
Cited by: 25
Author(s): Lingfei Shangguan, Han jinsoo, Emrul Kayesh, Xin Sun, Changqing Zhang, Tariq Pervaiz, Xicheng Wen, Jinggui Fang
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0012338

Rapid Dopaminergic Modulation of the Fish Hypothalamic Transcriptome and Proteome
Cited by: 35
Author(s): Jason T. Popesku, Christopher J. Martyniuk, Nancy D. Denslow, Vance L. Trudeau
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0004277

Genetic Editing of HBV DNA by Monodomain Human APOBEC3 Cytidine Deaminases and the Recombinant Nature of APOBEC3G
Cited by: 71
Author(s): H. Mathieu, Denise Guétard, Rodolphe Suspène, Christophe Rusniok, Simon Wain‐Hobson, Jean‐Pierre Vartanian
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0171187

De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens
Cited by: 10
Author(s): Yanhe Li, Hanping Wang, Hong Yao, Paul O’Bryant, Dean Rapp, Liang Guo, Eman A. Waly
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0177606

Mitochondrial genome evolution in Alismatales: Size reduction and extensive loss of ribosomal protein genes
Cited by: 35
Author(s): Gitte Petersen, Argelia Cuenca, Athnanasios Zervas, Gregory T Ross, Sean W. Graham, Craig F. Barrett, Jerrold I. Davis, Ole Seberg
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0095384

The Microbial Diversity of Traditional Spontaneously Fermented Lambic Beer
Cited by: 182
Author(s): Freek Spitaels, Anneleen D. Wieme, Maarten Janssens, Maarten Aerts, Heide-Marie Daniel, Anita Van Landschoot, Luc De Vuyst, Peter Vandamme
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0072645

Secreted Phosphoprotein 24 kD (Spp24) and Spp14 Affect TGF-β Induced Bone Formation Differently
Cited by: 17
Author(s): Haijun Tian, Xiaojun Bi, Chenshuang Li, Ke Wei Zhao, Elsa J. Brochmann, Scott R. Montgomery, Bayan Aghdasi, Deyu Chen, Michael D. Daubs, Jeffrey C. Wang, Samuel S. Murray
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0080346

High Endemicity and Low Molecular Diversity of Hepatitis B Virus Infections in Pregnant Women in a Rural District of North Cameroon
Cited by: 48
Author(s): Alexandra Ducancelle, P. Abgueguen, Jacques Birguel, Waël Mansour, Adeline Pivert, Hélène Le Guillou‐Guillemette, Jean-Jacques Sobnangou, Amélie Rameau, Jean‐Marie Huraux, Françoise Lunel‐Fabiani
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0124507

The Development and Evaluation of a Loop-Mediated Isothermal Amplification Method for the Rapid Detection of Salmonella enterica serovar Typhi
Cited by: 30
Author(s): Fenxia Fan, Pengcheng Du, Biao Kan, Mei Yan
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0143280

Identification of 14-3-3 Family in Common Bean and Their Response to Abiotic Stress
Cited by: 23
Author(s): Ruihua Li, Xiaotong Jiang, Dong Jin, Sangeeta Dhaubhadel, Shaomin Bian, Xuyan Li
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0211989

Nocardia polymerase chain reaction (PCR)-based assay performed on bronchoalveolar lavage fluid after lung transplantation: A prospective pilot study
Cited by: 17
Author(s): Julien Coussement, David Lebeaux, Najla El Bizri, Vincent Claes, Michel Kohnen, Deborah Steensels, Isabelle Étienne, Hélène Salord, Emmanuelle Bergeron, Verónica Rodríguez-Nava
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0054084

40S Ribosome Biogenesis Co-Factors Are Essential for Gametophyte and Embryo Development
Cited by: 69
Author(s): Sandra Missbach, Benjamin L. Weis, Roman Martin, Stefan Simm, Markus T. Bohnsack, Enrico Schleiff
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0181037

Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield
Cited by: 8
Author(s): Shukun Jiang, Shuang Sun, Liangming Bai, Guohua Ding, Tongtong Wang, Tianshu Xia, Hui Jiang, Xijuan Zhang, Fengming Zhang
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0200511

Discovery and characterization of novel Aspergillus fumigatus mycoviruses
Cited by: 38
Author(s): Jan Zoll, Paul E. Verweij, Willem J. G. Melchers
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0117472

Androgen Receptor and Histone Lysine Demethylases in Ovine Placenta
Cited by: 32
Author(s): Ellane R. Cleys, Jennifer L. Halleran, Vanessa A. Enriquez, Juliano Coelho da Silveira, Rachel C. West, Quinton A. Winger, Russell V. Anthony, J.E. Bruemmer, Colin M. Clay, Gerrit J. Bouma
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0030591

Mutational Robustness of Gene Regulatory Networks
Cited by: 13
Author(s): Aalt D. J. van Dijk, S. van Mourik, Roeland C. H. J. van Ham
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0201880

Interaction between the cellular E3 ubiquitin ligase SIAH-1 and the viral immediate-early protein ICP0 enables efficient replication of Herpes Simplex Virus type 2 in vivo
Cited by: 4
Author(s): Julia Stephanie Czechowicz, Claus-Henning Nagel, Maike Voges, Michael Spohn, Martha M. Eibl, Joachim Hauber
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0172308

Viruses in case series of tumors: Consistent presence in different cancers in the same subject
Cited by: 6
Author(s): Laila Sara Arroyo Mühr, Maria Hortlund, Zurab Bzhalava, Sara Nordqvist Kleppe, Davit Bzhalava, Emilie Hultin, Joakim Dillner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0077217

Transcriptomic Analysis of Paulownia Infected by Paulownia Witches'-Broom Phytoplasma
Cited by: 65
Author(s): Hai-Qing Mou, Jie Lu, Shuifang Zhu, Cai-li Lin, Guozhong Tian, Xiaoyong Xu, Wenjun Zhao
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0065682

Lipoprotein FtsB in Streptococcus pyogenes Binds Ferrichrome in Two Steps with Residues Tyr137 and Trp204 as Critical Ligands
Cited by: 7
Author(s): Hui Li, Nan Li, Qian Xu, Chuan-Le Xiao, Hongcui Wang, Zhong Guo, Jing Zhang, Xia Sun, Qing-Yu He
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0009083

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes
Cited by: 72
Author(s): Matthew R. Henn, Matthew B. Sullivan, Nicole Stange-Thomann, Marcia S. Osburne, Aaron M. Berlin, Libusha Kelly, Chandri Yandava, Chinnappa D. Kodira, Qiandong Zeng, Michael Weiand, Todd Sparrow, Sakina Saif, Georgia Giannoukos, Sarah Young, Chad Nusbaum, Bruce W. Birren, Sallie W. Chisholm
Software Mentions: 1
Published: over 16 years ago

10.1038/s41419-021-03829-y

Recovery of human gut microbiota genomes with third-generation sequencing
Cited by: 10
Author(s): Yanfei Li, Yueling Jin, Jianming Zhang, Haoying Pan, Wu Lan, Dingsheng Liu, Jinlong Liu, Jing Hu, Junwei Shen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-018-1078-8

Bone marrow infiltrated Lnc-INSR induced suppressive immune microenvironment in pediatric acute lymphoblastic leukemia
Cited by: 22
Author(s): Yaping Wang, Xiaoyun Yang, Xiaoyan Sun, Liucheng Rong, Meiyun Kang, Peng Wu, Xiaohui Ji, Rufeng Lin, Jie Huang, Yue Xue, Yongjun Fang
Software Mentions: 1
Published: almost 8 years ago

10.1186/1747-1028-7-21

Epitope of titin A-band-specific monoclonal antibody Tit1 5 H1.1 is highly conserved in several Fn3 domains of the titin molecule. Centriole staining in human, mouse and zebrafish cells
Cited by: 9
Author(s): Aavo-Valdur Mikelsaar, Alar Sünter, Ruth Mikelsaar, Peeter Toomik, Anu Kǒiveer, Imre Mikelsaar, Erkki Juronen
Software Mentions: 1
Published: over 14 years ago

10.1111/cmi.12050

Diversion of phagosome trafficking by pathogenic <scp>R</scp> hodococcus equi depends on mycolic acid chain length
Cited by: 22
Author(s): Tobias Sydor, Kristine von Bargen, Fong‐Fu Hsu, Gitta Huth, Otto Holst, Jens Wohlmann, Ulrike Becken, Tobias Dykstra, Kristina Söhl, Buko Lindner, John F. Prescott, Ulrich E. Schaible, Olaf Utermöhlen, Albert Haas
Software Mentions: 1
Published: almost 14 years ago

10.1111/j.1462-5822.2008.01162.x

Expression and processing ofPlasmodium bergheiSERA3 during liver stages
Cited by: 45
Author(s): Anja Schmidt-Christensen, Angelika Sturm, Sebastian Horstmann, Volker Heussler
Software Mentions: 1
Published: about 18 years ago

10.1111/j.1462-5822.2010.01531.x

The E Block motif is associated withLegionella pneumophilatranslocated substrates
Cited by: 165
Author(s): Lili Huang, Dana Boyd, Whitney Amyot, Andrew D. Hempstead, Zhao‐Qing Luo, Tamara J. O’Connor, Cui Chen, Matthias P. Machner, Timothy P. Montminy, Ralph R. Isberg
Software Mentions: 1
Published: almost 16 years ago

10.1111/j.1462-5822.2008.01136.x

Subversion of actin dynamics by EspM effectors of attaching and effacing bacterial pathogens
Cited by: 72
Author(s): Ana Arbeloa, Richard Bulgin, Georgina MacKenzie, Robert K. Shaw, Mark J. Pallen, Valérie F. Crepin, Cédric N. Berger, Gad Frankel
Software Mentions: 1
Published: about 18 years ago

10.1186/s11658-019-0171-z

The effects of CRISPR-Cas9 knockout of the TGF-β1 gene on antler cartilage cells in vitro
Cited by: 9
Author(s): Mingxiao Liu, Xiangyu Han, Hongyun Liu, Danyang Chen, Yue Li, Wei Hu
Software Mentions: 1
Published: over 7 years ago

10.1007/s10561-018-9701-6

Multilineage potential research of Beijing duck amniotic mesenchymal stem cells
Cited by: 4
Author(s): Caiyun Ma, Kunfu Wang, Hongda Ji, Hongliang Wang, Liangcai Guo, Zhiyong Wang, Han Ren, Xishuai Wang, Weijun Guan
Software Mentions: 1
Published: over 8 years ago

10.1186/s13148-019-0758-2

Histone methyltransferases EHMT1 and EHMT2 (GLP/G9A) maintain PARP inhibitor resistance in high-grade serous ovarian carcinoma
Cited by: 52
Author(s): Zachary L. Watson, Tomomi M. Yamamoto, Alexandra McMellen, Hyunmin Kim, Connor J. Hughes, Lindsay J. Wheeler, Miriam D. Post, Kian Behbakht, Benjamin G. Bitler
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40169-017-0140-y

Survivin a radiogenetic promoter for glioblastoma viral gene therapy independently from CArG motifs
Cited by: 10
Author(s): George E. Naoum, Zeng B. Zhu, Donald J. Buchsbaum, David T. Curiel, Waleed Arafat
Software Mentions: 1
Published: over 9 years ago

10.1038/s42003-020-1004-3

Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes
Cited by: 39
Author(s): Magdalena Całusińska, Martyna Marynowska, Marie Bertucci, Boris Untereiner, Dominika Klimek, Xavier Goux, David Sillam‐Dussès, Piotr Gawron, Rashi Halder, Paul Wilmes, Pau Ferrer, Patrick A. Gerin, Yves Roisin, Philippe Delfosse
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-021-02162-6

A human respiratory tract-associated bacterium with an extremely small genome
Cited by: 2
Author(s): Kazumasa Fukuda, Kei Yamasaki, Yoshitoshi Ogura, Toshinori Kawanami, Hiroaki Ikegami, Shingo Noguchi, Kentaro Akata, Keisuke Katsura, Kazuhiro Yatera, Hiroshi Mukae, Tetsuya Hayashi, Hatsumi Taniguchi
Software Mentions: 1
Published: over 5 years ago

10.3897/CompCytogen.v14i2.49391

Cloning and preliminary verification of telomere-associated sequences in upland cotton
Cited by: 0
Author(s): Yuling Liu, Zhen Liu, Yangyang Wei, Yanjun Wang, Jiaran Shuang, Renhai Peng
Software Mentions: 1
Published: over 6 years ago

10.1007/s00284-021-02503-y

Consuming Different Structural Parts of Bamboo Induce Gut Microbiome Changes in Captive Giant Pandas
Cited by: 8
Author(s): Zheng Yan, Qin Xu, Walter H. Hsu, Stephan Schmitz Esser, James Ayala, Rong Hou, Ying Yao, Dandan Jiang, Shibin Yuan, Hairui Wang
Software Mentions: 1
Published: over 5 years ago

10.1093/dnares/dsu008

In Silico Identification and Experimental Validation of Insertion-Deletion Polymorphisms in Tomato Genome
Cited by: 43
Author(s): Jingjing Yang, Yuanyuan Wang, Huolin Shen, Wencai Yang
Software Mentions: 1
Published: over 12 years ago

10.1016/j.dib.2018.05.131

A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data
Cited by: 4
Author(s): Vishal Singh Somvanshi, Olivia Ghosh, Roli Budhwar, Bhumika Dubay, Rohit Nandan Shukla, Uma Rao
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2015.04.012

Phospho-iTRAQ data article: Assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry
Cited by: 1
Author(s): Pieter Glibert, Paulien Meert, Katleen Van Steendam, Lennart Martens, Dieter Deforce, Maarten Dhaenens
Software Mentions: 1
Published: about 11 years ago

10.1016/j.dib.2020.105898

Draft-genome sequence data and phylogenomic comparison of two marine-sourced bacterial strains Pseudoalteromonas sp. MIP2626 and Psychrobacter sp. BI730
Cited by: 2
Author(s): Caroline Isabel Kothe, Christine Delbarre-Ladrat, Pierre Renault, Delphine Passerini
Software Mentions: 1
Published: about 6 years ago

10.1093/database/bav002

FR database 1.0: a resource focused on fruit development and ripening
Cited by: 6
Author(s): Junyang Yue, Xiaojing Ma, Rongjun Ban, Qianli Huang, Wenjie Wang, Jia Liu, Yongsheng Liu
Software Mentions: 1
Published: over 11 years ago

10.1093/database/bau035

TuberQ: a Mycobacterium tuberculosis protein druggability database
Cited by: 30
Author(s): Leandro Radusky, Lucas A. Defelipe, Esteban Lanzarotti, F. Javier Luque, Xavier Barril, Marcelo Adrian Marti, Adrián Turjanski
Software Mentions: 1
Published: over 12 years ago

10.1093/database/baaa049

RNAWRE: a resource of writers, readers and erasers of RNA modifications
Cited by: 13
Author(s): Fulei Nie, Pengmian Feng, Xiaoming Song, Meng Wu, Qiang Tang, Wei Chen
Software Mentions: 1
Published: over 6 years ago

10.1093/database/baz092

Combined alignments of sequences and domains characterize unknown proteins with remotely related protein search PSISearch2D
Cited by: 1
Author(s): Minglei Yang, Wenliang Zhang, Yao GuoCai, Haiyue Zhang, Weizhong Li
Software Mentions: 1
Published: over 7 years ago

10.15252/emmm.201606924

Y <scp>RNA</scp> fragment in extracellular vesicles confers cardioprotection via modulation of <scp>IL</scp> ‐10 expression and secretion
Cited by: 157
Author(s): Linda Cambier, Geoffrey de Couto, Ahmed Ibrahim, Antonio Echavez, Jackelyn Valle, Weixin Liu, Michelle Kreke, Rachel Smith, Linda Marbán, Eduardo Marbán
Software Mentions: 1
Published: over 9 years ago

10.15252/embr.201744102

Evolutionary dynamics of the kinetochore network in eukaryotes as revealed by comparative genomics
Cited by: 190
Author(s): Jolien J. E. van Hooff, Eelco C. Tromer, Leny M. van Wijk, Berend Snel, Geert J. P. L. Kops
Software Mentions: 1
Published: over 9 years ago

10.1002/ece3.7162

Ancient DNA preserved in small bone fragments from the P.W. Lund collection
Cited by: 9
Author(s): Frederik Valeur Seersholm, Kasper Lykke Hansen, Matthew J. Heydenrych, Anders J. Hansen, Michael Bunce, Morten E. Allentoft
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.624

Inferences of evolutionary history of a widely distributed mangrove species,Bruguiera gymnorrhiza, in the Indo-West Pacific region
Cited by: 34
Author(s): Chie Urashi, Kenjiro Teshima, Sumiko Minobe, Osamu Koizumi, Norio Inomata
Software Mentions: 1
Published: over 13 years ago

10.1002/ece3.4754

Effects of a presumably protective endosymbiont on life‐history characters and their plasticity for its host aphid on three plants
Cited by: 10
Author(s): Shirong Liu, Deguang Liu, Rongfang Zhang, Yingting Zhai, Xianliang Huang, Da Wang, Xiaoqin Shi
Software Mentions: 1
Published: almost 8 years ago

10.1080/22221751.2020.1727299

HIV-1 did not contribute to the 2019-nCoV genome
Cited by: 38
Author(s): Chuan Xiao, Xiaojun Li, Shuying Liu, Yongming Sang, Shuang Gao, Feng Gao
Software Mentions: 1
Published: over 6 years ago

10.1002/elsc.202000038

A novel LysR‐type regulator negatively affects biosynthesis of the immunosuppressant brasilicardin
Cited by: 3
Author(s): Marcin Wolański, Michał Krawiec, Paul N. Schwarz, Evi Stegmann, Wolfgang Wohlleben, Anina Buchmann, Harald Gross, Michael Eitel, Pierre Koch, Alma Botas, Cármen Méndez, Luz Elena Núñez, Francisco Morís, Jesús M. Cortés, Jolanta Zakrzewska‐Czerwińska
Software Mentions: 1
Published: almost 6 years ago

10.1111/j.1462-2920.2008.01861.x

High abundance of virulence gene homologues in marine bacteria
Cited by: 88
Author(s): Olof P. Persson, Jarone Pinhassi, Lasse Riemann, Britt-Inger Marklund, Mikael Rhen, Staffan Normark, José M. González, Åke Hagström
Software Mentions: 1
Published: over 17 years ago

10.1111/j.1462-2920.2009.01900.x

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
Cited by: 426
Author(s): Mirjana Rajilić‐Stojanović, Hans G.H.J. Heilig, Douwe Molenaar, Kajsa Kajander, Anu Surakka, Hauke Smidt, Willem M. de Vos
Software Mentions: 1
Published: about 17 years ago

10.1111/j.1462-2920.2012.02746.x

Ciliate and bacterial communities associated with White Syndrome and Brown Band Disease in reef‐building corals
Cited by: 88
Author(s): Michael Sweet, John C. Bythell
Software Mentions: 1
Published: over 14 years ago

10.1111/j.1462-2920.2008.01760.x

Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur‐oxidizing prokaryotes
Cited by: 135
Author(s): Alexander Loy, Stephan Duller, Christian Baranyi, Marc Mußmann, Jörg Ott, Itai Sharon, Oded Béjà, Denis Le Paslier, Christiane Dahl, Michael Wagner
Software Mentions: 1
Published: over 17 years ago

10.1111/j.1462-2920.2008.01650.x

The exopolysaccharide ofRhizobiumsp. YAS34 is not necessary for biofilm formation onArabidopsis thalianaandBrassica napusroots but contributes to root colonization
Cited by: 87
Author(s): Catherine Santaella, Mathieu Schué, Odile Berge, Thierry Heulin, Wafa Achouak
Software Mentions: 1
Published: about 18 years ago

10.1111/j.1462-2920.2012.02774.x

The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
Cited by: 222
Author(s): Jack van de Vossenberg, Dagmar Woebken, Wouter J. Maalcke, Hans Wessels, Bas E. Dutilh, Boran Kartal, Eva M. Janssen-Megens, Guus Roeselers, Jia Yan, Daan R. Speth, Jolein Gloerich, Wim Geerts, Erwin van der Biezen, Wendy Pluk, Kees−Jan Françoijs, Lina Russ, Phyllis Lam, Stephanie Malfatti, Susannah G. Tringe, Suzanne Caroline Marianne Haaijer, Huub J. M. Op den Camp, Henk Stunnenberg, Rudolf Amann, Marcel M. M. Kuypers, Mike S. M. Jetten
Software Mentions: 1
Published: over 14 years ago

10.1111/1462-2920.14056

Distribution of thermophilic endospores in a temperate estuary indicate that dispersal history structures sediment microbial communities
Cited by: 19
Author(s): Emma Bell, Lynsay I. Blake, Angela Sherry, Ian M. Head, Claude Hubert
Software Mentions: 1
Published: over 8 years ago

10.1111/1462-2920.13895

Transient exposure to oxygen or nitrate reveals ecophysiology of fermentative and sulfate‐reducing benthic microbial populations
Cited by: 26
Author(s): Sainab Saad, Srijak Bhatnagar, Halina E. Tegetmeyer, Jeanine S. Geelhoed, Marc Strous, S. Emil Ruff
Software Mentions: 1
Published: about 9 years ago

10.1111/j.1462-2920.2011.02521.x

Massive dominance of Epsilonproteobacteria in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil
Cited by: 119
Author(s): Claude Hubert, Thomas B. P. Oldenburg, Milovan Fustic, Neil Gray, Stephen R. Larter, Kevin Penn, AD Rowan, Rekha Seshadri, Angela Sherry, Richard Swainsbury, Gerrit Voordouw, Johanna K. Voordouw, Ian M. Head
Software Mentions: 1
Published: about 15 years ago

10.1111/j.1758-2229.2011.00249.x

Quantification of syntrophic acetate‐oxidizing microbial communities in biogas processes
Cited by: 130
Author(s): Maria Westerholm, Jan Dolfing, Angela Sherry, Neil Gray, Ian M. Head, Anna Schnürer
Software Mentions: 1
Published: over 15 years ago

10.1111/1758-2229.12313

Amid the possible causes of a very famous foxing: molecular and microscopic insight into <scp>L</scp> eonardo da <scp>V</scp> inci's self‐portrait
Cited by: 43
Author(s): Güadalupe Piñar, Hakim Tafer, Katja Sterflinger, Flavia Pinzari
Software Mentions: 1
Published: about 11 years ago

10.2807/1560-7917.ES.2019.24.18.1800419

Molecular identification of the source of an uncommon tularaemia outbreak, Germany, autumn 2016
Cited by: 8
Author(s): Daniela Jacob, Kristin Köppen, Aleksandar Radonić, Berit Haldemann, Philipp Zanger, Klaus Heuner, Roland Grunow
Software Mentions: 1
Published: over 7 years ago

10.1186/s13227-017-0066-x

Expression patterns of Passiflora edulis APETALA1/FRUITFULL homologues shed light onto tendril and corona identities
Cited by: 20
Author(s): Livia C T Scorza, José Hernandes‐Lopes, Gladys Flávia de Albuquerque Melo-de-Pinna, Marcelo Carnier Dornelas
Software Mentions: 1
Published: over 9 years ago

10.1186/s13227-015-0036-0

Posterior eyespots in larval chitons have a molecular identity similar to anterior cerebral eyes in other bilaterians
Cited by: 21
Author(s): Oliver Vöcking, Ioannis Kourtesis, Harald Hausen
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13227-015-0026-2

Sexually dimorphic gene expression in the lateral eyes of Euphilomedes carcharodonta (Ostracoda, Pancrustacea)
Cited by: 4
Author(s): Andrea Sajuthi, Brenna Carrillo-Zazueta, Briana Hu, Anita Wang, Logan Brodnansky, John Mayberry, Ajna S. Rivera
Software Mentions: 1
Published: almost 11 years ago

10.1111/j.1525-142X.2011.00489.x

Evolution of the Alx homeobox gene family: parallel retention and independent loss of the vertebrate Alx3 gene
Cited by: 40
Author(s): Imelda M. McGonnell, Anthony Graham, Jo Richardson, Jennifer L. Fish, Michael J. Depew, Chris T. Dee, Peter W.H. Holland, Tsuguhiro Takahashi
Software Mentions: 1
Published: about 15 years ago

Projects: pypi: blast

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Papers Mentioning blast 1,819