pypi: blast | Projects | Ecosyste.ms: Papers

10.3389/fpls.2021.670216

Acetic Acid-Producing Endophyte Lysinibacillus fusiformis Orchestrates Jasmonic Acid Signaling and Contributes to Repression of Cadmium Uptake in Tomato Plants
Cited by: 4
Author(s): Lin Zhu, Jiansheng Guo, Yuxuan Sun, Songhua Wang, Cheng Zhou
Software Mentions: 1
Published: about 4 years ago

10.3389/fpls.2016.00265

Cry1Ac Transgenic Sugarcane Does Not Affect the Diversity of Microbial Communities and Has No Significant Effect on Enzyme Activities in Rhizosphere Soil within One Crop Season
Cited by: 19
Author(s): Dinggang Zhou, Liping Xu, Shaopei Gao, Jinlong Guo, Jun Luo, Qi You, Youxiong Que
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2017.01973

Marker Development for Phylogenomics: The Case of Orobanchaceae, a Plant Family with Contrasting Nutritional Modes
Cited by: 2
Author(s): Xi Li, Baohai Hao, Da Pan, Gerald M. Schneeweiss
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2016.00728

Subcellular Localization of Galloylated Catechins in Tea Plants [Camellia sinensis (L.) O. Kuntze] Assessed via Immunohistochemistry
Cited by: 15
Author(s): Huanhuan Xu, Wang Ya, Yana Chen, Pan Zhang, Yi Zhao, Yewei Huang, Xuanjun Wang, Jun Sheng
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0169196

Novel Role of 3’UTR-Embedded Alu Elements as Facilitators of Processed Pseudogene Genesis and Host Gene Capture by Viral Genomes
Cited by: 12
Author(s): Domènec Farré, Pablo Engel, Ana Angulo
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.559

Metagenome fragment classification based on multiple motif-occurrence profiles
Cited by: 2
Author(s): Naoyuki Matsushita, Shigeto Seno, Yasuhiro Takenaka, Hideo Matsuda
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2021.676113

First Report of Coexistence of blaSFO–1 and blaNDM–1 β-Lactamase Genes as Well as Colistin Resistance Gene mcr-9 in a Transferrable Plasmid of a Clinical Isolate of Enterobacter hormaechei
Cited by: 12
Author(s): Wenxiu Ai, Ying Zhou, Bingjie Wang, Qing Zhan, Longhua Hu, Yanling Xu, Yinjuan Guo, Liangxing Wang, Fangyou Yu, Xiaolong Li
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0025773

Miniature Transposable Sequences Are Frequently Mobilized in the Bacterial Plant Pathogen Pseudomonas syringae pv. phaseolicola
Cited by: 21
Author(s): Leire Bardaji, Maite Añorga, Robert W. Jackson, Alejandro Martínez-Bilbao, Natalia Yanguas‐Casás, Jesús Murillo
Software Mentions: 1
Published: almost 14 years ago

10.3389/fmicb.2019.02565

Root-Colonizing Endophytic Fungi of the Dominant Grass Stipa krylovii From a Mongolian Steppe Grassland
Cited by: 22
Author(s): Dániel G. Knapp, Ildikó Imrefi, Enkhtuul Boldpurev, Sándor Csíkos, Galiya Akhmetova, Péter János Berek-Nagy, Burenjargal Otgonsuren, Gábor M. Kovács
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02700

Novel Isoprene-Degrading Proteobacteria From Soil and Leaves Identified by Cultivation and Metagenomics Analysis of Stable Isotope Probing Experiments
Cited by: 27
Author(s): Nasmille L Larke-Mejía, Andrew T. Crombie, Jennifer Pratscher, Terry J. McGenity, J. Colin Murrell
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01573

Kinetics of Phenol Biodegradation by Heavy Metal Tolerant Rhizobacteria Glutamicibacter nicotianae MSSRFPD35 From Distillery Effluent Contaminated Soils
Cited by: 31
Author(s): Purushothaman Duraisamy, Jegan Sekar, Anu D. Arunkumar, V. R. Prabavathy
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2016.00792

Comparative Analysis of Genomics and Proteomics in the New Isolated Bacillus thuringiensis X022 Revealed the Metabolic Regulation Mechanism of Carbon Flux Following Cu2+ Treatment
Cited by: 9
Author(s): Meifang Quan, Junyan Xie, Xuemei Liu, Yang Li, Jie Rang, Tong Zhang, Fengjuan Zhou, Liqiu Xia, Shengbiao Hu, Yunjun Sun, Xuezhi Ding
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0032990

Proteomic Analysis of Fusarium solani Isolated from the Asian Longhorned Beetle, Anoplophora glabripennis
Cited by: 31
Author(s): Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2016.01757

Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics
Cited by: 10
Author(s): Roger Karlsson, Kaisa Thorell, Shaghayegh Hosseini, Diarmuid T. Kenny, Carina Sihlbom, Åsa Sjöling, Anders Karlsson, Intawat Nookaew
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms130810154

The Opuntia streptacantha OpsHSP18 Gene Confers Salt and Osmotic Stress Tolerance in Arabidopsis thaliana
Cited by: 11
Author(s): S. Salas-Muñoz, Gracia Goméz‐Anduro, Pablo Delgado‐Sánchez, Margarita Rodríguez‐Kessler, Juan Francisco Jiménez-Bremont
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0025648

MYCT1-TV, A Novel MYCT1 Transcript, Is Regulated by c-Myc and May Participate in Laryngeal Carcinogenesis
Cited by: 20
Author(s): Shuang Fu, Yan Guo, Hong Chen, Zhonghua Xu, Guang-Bin Qiu, Ming Zhong, Kun Sun, Wei‐Neng Fu
Software Mentions: 1
Published: almost 14 years ago

10.3389/fmicb.2020.00183

Host Transcriptional Response of Sclerotinia sclerotiorum Induced by the Mycoparasite Coniothyrium minitans
Cited by: 4
Author(s): Huizhang Zhao, Ting Zhou, Jiǎtāo Xiè, Jiāsēn Chéng, Dàohóng Jiāng, Yànpíng Fù
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.00460

Discovery of Novel Antibiotic Resistance Determinants in Forest and Grassland Soil Metagenomes
Cited by: 23
Author(s): Inka M. Willms, Aysha Kamran, Nils Frederik Aßmann, Denis Krone, Simon Henning Bolz, Fabian Fiedler, Heiko Nacke
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0173696

Novel copy number variation of the TGFβ3 gene is associated with TGFβ3 gene expression and duration of fertility traits in hens
Cited by: 7
Author(s): Lantao Gu, Chenghao Sun, Yangzhang Gong, Mei Yu, Shijun Li
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0060896

Evolution of Hepatic Glucose Metabolism: Liver-Specific Glucokinase Deficiency Explained by Parallel Loss of the Gene for Glucokinase Regulatory Protein (GCKR)
Cited by: 11
Author(s): Zhao Yang Wang, Ling Jin, Tan H, David M. Irwin
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0060843

CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes
Cited by: 178
Author(s): Sheng-Di Lin, Yu-Chieh Liao
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2019.01351

Evolutionary Analysis of Unicellular Species in Chlamydomonadales Through Chloroplast Genome Comparison With the Colonial Volvocine Algae
Cited by: 13
Author(s): Yuxin Hu, Weiqin Xing, Song Huang, Huan Zhu, Guoxiang Liu, Zhengyu Hu
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms14058985

Characteristic of the Pepper CaRGA2 Gene in Defense Responses against Phytophthora capsici Leonian
Cited by: 34
Author(s): Yingli Zhang, Qingli Jia, Dawei Li, Jun-E Wang, Yanxu Yin, Zhen-Hui Gong
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2018.03047

Understand the Potential Role of Aureobasidium pullulans, a Resident Microorganism From Grapevine, to Prevent the Infection Caused by Diplodia seriata
Cited by: 35
Author(s): Cátia Pinto, Valéria Custódio, Mariana Nunes, Aurélie Songy, Fanja Rabenoelina, Barbara Courteaux, Christophe Clément, Ana Catarina Gomes, Florence Fontaine
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0026060

R1507, an Anti-Insulin-Like Growth Factor-1 Receptor (IGF-1R) Antibody, and EWS/FLI-1 siRNA in Ewing's Sarcoma: Convergence at the IGF/IGFR/Akt Axis
Cited by: 33
Author(s): Helen J. Huang, Laura S. Angelo, Jordi Rodón, Michael Sun, Klaus Peter Kuenkele, Henrique A. Parsons, Jonathan C. Trent, Razelle Kurzrock
Software Mentions: 1
Published: almost 14 years ago

10.3389/fmicb.2015.00675

Detection of Mycobacterium tuberculosis in extrapulmonary biopsy samples using PCR targeting IS6110, rpoB, and nested-rpoB PCR Cloning
Cited by: 14
Author(s): Hossein Meghdadi, Azar Dokht Khosravi, Ataallah Ghadiri, Amir Hossein Sina, Ameneh Alami
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms141020204

OsPOP5, A Prolyl Oligopeptidase Family Gene from Rice Confers Abiotic Stress Tolerance in Escherichia coli
Cited by: 23
Author(s): Cun-Mei Tan, Rongjun Chen, Jianhua Zhang, Xiaoling Gao, Lihua Li, Pingrong Wang, Xiping Deng, Zhengjun Xu
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0151633

Differential Growth Responses of Marine Phytoplankton to Herbicide Glyphosate
Cited by: 36
Author(s): Cong Wang, Xin Lin, Ling Li, Senjie Lin
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.3059

True’s beaked whale (<i>Mesoplodon mirus</i>) in Macaronesia
Cited by: 11
Author(s): Natacha Aguilar de Soto, Vidal Martín, Mónica Silva, Roland Edler, Cristel Reyes, Manuel Carrillo, Agustina Schiavi, Talia Morales, Belen García-Ovide, Anna Sanchez-Mora, Nerea Garcia-Tavero, Lisa A. Steiner, M. Scheer, Roland Gockel, Dylan Walker, Enrico Villa, Petra Szlama, Ida K. Eriksson, M. Tejedor, Mónica Pérez-Gil, João Nazareno Nonato Quaresma, Wojtek Bachara, Emma L. Carroll
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0093497

Solenopsis invicta virus 3: Mapping of Structural Proteins, Ribosomal Frameshifting, and Similarities to Acyrthosiphon pisum virus and Kelp fly virus
Cited by: 17
Author(s): Steven M. Valles, Susanne Bell, Andrew E. Firth
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2020.01600

The Exopolysaccharide Cepacian Plays a Role in the Establishment of the Paraburkholderia phymatum – Phaseolus vulgaris Symbiosis
Cited by: 12
Author(s): Yilei Liu, Barbara Bellich, Sebastian Hug, Leo Eberl, Paola Cescutti, Gabriella Pessi
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms161226219

The Complete Mitochondrial Genome of Mindarus keteleerifoliae (Insecta: Hemiptera: Aphididae) and Comparison with Other Aphididae Insects
Cited by: 10
Author(s): Yuan Wang, Jing Chen, Li‐Yun Jiang, Ge‐Xia Qiao
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0187858

Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
Cited by: 25
Author(s): Zhigang Zhu, Samantha Joan Noel, Gareth Frank Difford, Waleed Abu Al‐Soud, Asker Brejnrod, Søren J. Sørensen, Jan Lassen, Peter Løvendahl, Ole Højberg
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.00663

Metagenomic Sequencing of Diamondback Moth Gut Microbiome Unveils Key Holobiont Adaptations for Herbivory
Cited by: 111
Author(s): Xiaofeng Xia, Geoff M. Gurr, Liette Vasseur, Dan Zheng, Zhong Huang, Bingcai Qin, Junhan Lin, Yue Wang, Fengqin Song, Yong Li, Hailan Lin, Minsheng You
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.706700

Virulent Drexlervirial Bacteriophage MSK, Morphological and Genome Resemblance With Rtp Bacteriophage Inhibits the Multidrug-Resistant Bacteria
Cited by: 3
Author(s): Muhammad Saleem Iqbal Khan, Xiangzheng Gao, Keying Liang, Shengsheng Mei, Jin-biao Zhan
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2020.600576

Dual Microbial Inoculation, a Game Changer? – Bacterial Biostimulants With Multifunctional Growth Promoting Traits to Mitigate Salinity Stress in Spring Mungbean
Cited by: 32
Author(s): Kailash Chand Kumawat, Poonam Sharma, Sharon Nagpal, Rajeev Kumar Gupta, Asmita Sirari, Ramakrishnan M. Nair, H. Bindumadhava, Surender Singh
Software Mentions: 1
Published: over 4 years ago

10.1038/srep45188

Transcriptome analysis of molecular mechanisms responsible for light-stress response in Mythimna separata (Walker)
Cited by: 24
Author(s): Yun Duan, Zhong-Jun Gong, Wu RenHai, Miao Jin, Yi Jiang, Tong Li, Xiaobo Wu, Yuqing Wu
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms17060825

Cloning, Expression and 3D Structure Prediction of Chitinase from Chitinolyticbacter meiyuanensis SYBC-H1
Cited by: 9
Author(s): Zhikui Hao, Heng Wu, Meiling Yang, Jianjun Chen, Limin Xi, Weijie Zhao, Jialin Yu, Jiayang Liu, Xiangru Liao, Qingguo Huang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-00067-1

Novel protein acetyltransferase, Rv2170, modulates carbon and energy metabolism in Mycobacterium tuberculosis
Cited by: 15
Author(s): Wonsik Lee, Brian C. VanderVen, Suzanne Walker, David G. Russell
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-01220-6

Transcriptome analysis on the exoskeleton formation in early developmetal stages and reconstruction scenario in growth-moulting in Litopenaeus vannamei
Cited by: 30
Author(s): Yi Gao, Jiankai Wei, Jianbo Yuan, Xiaojun Zhang, Fuhua Li, Jianhai Xiang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-01383-2

Comparative transcriptome analysis of venom glands from Cotesia vestalis and Diadromus collaris, two endoparasitoids of the host Plutella xylostella
Cited by: 16
Author(s): Wei Zhao, Min Shi, Xi-qian Ye, Fĕi Li, Xiaowei Wang, Xue‐Xin Chen
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-01608-4

The mitochondrial genomes of the acoelomorph worms Paratomella rubra, Isodiametra pulchra and Archaphanostoma ylvae
Cited by: 21
Author(s): Helen E. Robertson, François Lapraz, Bernhard Egger, Maximilian J. Telford, Philipp H. Schiffer
Software Mentions: 1
Published: about 8 years ago

10.1016/j.onehlt.2021.100217

Retrospective meta-transcriptomic identification of severe dengue in a traveller returning from Africa to Sweden, 1990
Cited by: 0
Author(s): Kristian Alfsnes, Nina Lagerqvist, Sirkka Vene, Jon Bohlin, Jenny Verner-Carlsson, David Ekqvist, Andreas Bråve, Edward C. Holmes, Weifeng Shi, John H.-O. Pettersson
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-017-03557-4

MatureP: prediction of secreted proteins with exclusive information from their mature regions
Cited by: 31
Author(s): Georgia Orfanoudaki, Maria Markaki, Katerina Chatzi, Ioannis Tsamardinos, Anastassios Economou
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-04094-w

Multiple introns in a deep-sea Annelid (Decemunciger: Ampharetidae) mitochondrial genome
Cited by: 18
Author(s): Ângelo F. Bernardino, Yuanning Li, Craig R. Smith, Kenneth M. Halanych
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-04879-z

Comparative transcriptome analysis on the synthesis pathway of honey bee (Apis mellifera) mandibular gland secretions
Cited by: 32
Author(s): Yuqi Wu, Huoqing Zheng, Miguel Corona, Christian Walter Werner Pirk, Fei Meng, Yi Zheng, Fuliang Hu
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0175702

Genetic and epigenetic changes in host ABCB1 influences malaria susceptibility to Plasmodium falciparum
Cited by: 19
Author(s): Himanshu Gupta, Sima Chaudhari, Amit Rai, Smitha Bhat, Pratima Kumari Sahu, Manjunath Hande, Sydney C. D’Souza, Shashikiran Umakanth, Kapaettu Satyamoorthy
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-06806-8

Full-length cloning, sequence analysis and expression detection of the β-tubulin gene from the Chinese gall aphid (Schlechtendalia chinensis)
Cited by: 0
Author(s): Ping Liu, Zixiang Yang, Xiaoming Chen, Hang Chen
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-08362-7

Genomic regions and genes related to inter-population differences in body size in the ground beetle Carabus japonicus
Cited by: 4
Author(s): Ryohei Komurai, Tomochika Fujisawa, Yutaka Okuzaki, Teiji Sota
Software Mentions: 1
Published: almost 8 years ago

10.3390/ph10010023

RNA-Eluting Surfaces for the Modulation of Gene Expression as A Novel Stent Concept
Cited by: 5
Author(s): Olivia Koenig, Diane Zengerle, Nadja Perle, Susanne Hoßfeld, Beate Neumann, Andreas Behring, Meltem Avci‐Adali, Tobias Walker, Christian Schlensak, Hans Peter Wendel, Andrea Nolte
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-07740-5

Elucidation of the molecular responses to waterlogging in Sesbania cannabina roots by transcriptome profiling
Cited by: 26
Author(s): Changliang Ren, Kong Chen, Yan Ke, Hua Zhang, Yongming Luo, Zhihong Xie
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-10388-w

Multiple origins of endosymbionts in Chlorellaceae with no reductive effects on the plastid or mitochondrial genomes
Cited by: 14
Author(s): Weishu Fan, Wenhu Guo, James L. Van Etten, Jeffrey P. Mower
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19020443

Indole-3-Acetic Acid Biosynthesis Pathways in the Plant-Beneficial Bacterium Arthrobacter pascens ZZ21
Cited by: 69
Author(s): Mengsha Li, Rui Guo, Fei Yu, Chuncheng Xu, Haiyan Zhao, Huixin Li, Jun Wu
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms19030709

The Complete Plastome Sequence of an Antarctic Bryophyte Sanionia uncinata (Hedw.) Loeske
Cited by: 30
Author(s): Soo‐Jin Park, Hyun Park, Yongrok Choi, Byeong-ha Lee, Jung-Eun Lee
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-12713-9

Transcriptome analysis of Spodoptera frugiperda Sf9 cells reveals putative apoptosis-related genes and a preliminary apoptosis mechanism induced by azadirachtin
Cited by: 23
Author(s): Benshui Shu, Jingjing Zhang, Sethuraman Veeran, Gaofeng Cui, Xin Yi, Guohua Zhong
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0006607

Subcomplex Iλ Specifically Controls Integrated Mitochondrial Functions in Caenorhabditis elegans
Cited by: 32
Author(s): Marni J. Falk, Julie Rosenjack, Erzsébet Polyák, Wichit Suthammarak, Zhongxue Chen, Phil G. Morgan, Margaret M. Sedensky
Software Mentions: 1
Published: almost 16 years ago

10.1038/s41598-017-16435-w

Isolation and functional identification of three cuticle protein genes during metamorphosis of the beet armyworm, Spodoptera exigua
Cited by: 15
Author(s): Saad Jan, Sisi Liu, Muhammad Hafeez, Xiangmei Zhang, Farman Ullah Dawar, Jian Guo, Chao Gao, Mo Wang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms19040929

The Complete Chloroplast Genome Sequence of Tree of Heaven (Ailanthus altissima (Mill.) (Sapindales: Simaroubaceae), an Important Pantropical Tree
Cited by: 59
Author(s): Josphat K. Saina, Zhizhong Li, Andrew W. Gichira, Yi-Ying Liao
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-17269-2

Quantitative trait loci mapping for feed conversion efficiency in crucian carp (Carassius auratus)
Cited by: 18
Author(s): Maolin Pang, Bishi Fu, Xin Yu, Haiyang Liu, Xinhua Wang, Zhan Yin, Shouqi Xie, Jingou Tong
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-17953-3

PiT2 regulates neuronal outgrowth through interaction with microtubule-associated protein 1B
Cited by: 11
Author(s): Xixiang Ma, Xiangyang Li, Ping Yi, Cheng Wang, Jun Weng, Li Zhang, Xuan Xu, Hao Sun, Shenglei Feng, Kai Li, Rui Chen, Shiyue Du, Xiao Mao, Xiaomei Zeng, Luo-Ying Zhang, Mugen Liu, Beisha Tang, Xuemei Zhu, Jin Shan, Jingyu Liu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-18937-z

Human complement receptor type 1 (CR1) protein levels and genetic variants in chronic Chagas Disease
Cited by: 9
Author(s): Thaisa Lucas Sandri, Kárita Cláudia Freitas Lidani, Fabiana Antunes Andrade, Christian G. Meyer, Peter G. Kremsner, Iara José de Messias-Reason, Thirumalaisamy P. Velavan
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0004352

At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1
Cited by: 129
Author(s): John P. Hagan, Brittany L. O'Neill, Colin L. Stewart, Serguei Kozlov, Carlo M. Croce
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0234335

Identification of genomic regions associated with shoot fly resistance in maize and their syntenic relationships in the sorghum genome
Cited by: 9
Author(s): Yogesh Vikal, Arshpreet Kaur, Jawala Jindal, Kirandeep Kaur, Devendra Pathak, Tosh Garg, Ashanpreet Singh, Princepal Singh, Inderjit Singh Yadav
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms19092518

Biochemical Characterization and Structural Modeling of Fused Glucose-6-Phosphate Dehydrogenase-Phosphogluconolactonase from Giardia lamblia
Cited by: 10
Author(s): Laura Morales-Luna, Hugo Serrano‐Posada, Abigail González‐Valdez, Daniel Ortega-Cuéllar, América Vanoye-Carlo, Beatriz Hernández-Ochoa, Edgar Sierra-Palacios, Yadira Rufino-González, Rosa Angélica Castillo-Rodríguez, Verónica Pérez de la Cruz, Liliana M. Moreno‐Vargas, Diego Prada‐Gracia, Jaime Marcial-Quino, Saúl Gómez-Manzo
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms19092501

Normal and Abortive Buds Transcriptomic Profiling of Broccoli ogu Cytoplasmic Male Sterile Line and Its Maintainer
Cited by: 7
Author(s): Jinshuai Shu, Lili Zhang, Yumei Liu, Zhansheng Li, Zhiyuan Fang, Limei Yang, Mu Zhuang, Yangyong Zhang, Honghao Lv
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21598-1

Transcriptome changes induced by abiotic stresses in Artemisia annua
Cited by: 30
Author(s): Divya Vashisth, Ritesh Kumar, Shantanu Rastogi, Vikas Patel, Alok Kalra, Madan M. Gupta, Anil Kumar Gupta, Ajit Kumar Shasany
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-21919-4

Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207
Cited by: 28
Author(s): Zarrin Basharat, Azra Yasmin, Tao He, Yigang Tong
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-22235-7

Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum
Cited by: 15
Author(s): Duarte Gouveia, François Bonneton, Christine Almunia, Jean Armengaud, H. Quéau, Davide Degli-Esposti, Olivier Geffard, Arnaud Chaumot
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0106201

Comparative Transcriptomic Characterization of the Early Development in Pacific White Shrimp Litopenaeus vannamei
Cited by: 89
Author(s): Jiankai Wei, Xiaojun Zhang, Yang Yu, Hao Huang, Fuhua Li, Jianhai Xiang
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms20205127

miR-7 Knockdown by Peptide Nucleic Acids in the Ascidian Ciona intestinalis
Cited by: 6
Author(s): Silvia Mercurio, Silvia Cauteruccio, Raoul Manenti, Simona Candiani, Giorgio Scarı̀, Emanuela Licandro, Roberta Pennati
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-24674-8

Heterologous DNA prime-protein boost immunization with RecA and FliD offers cross-clade protection against leptospiral infection
Cited by: 12
Author(s): Raja Veerapandian, Sankaran Sobana, Charles Solomon Akino Mercy, Bianca Cotto, Durlav Prasad Bora, Kalimuthusamy Natarajaseenivasan
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20225562

Functional Dissection of the Chickpea (Cicer arietinum L.) Stay-Green Phenotype Associated with Molecular Variation at an Ortholog of Mendel’s I Gene for Cotyledon Color: Implications for Crop Production and Carotenoid Biofortification
Cited by: 12
Author(s): Sivasakthi Kaliamoorthy, Edward Marques, Ng'andwe Kalungwana, Noelia Carrasquilla‐Garcia, Peter L. Chang, Emily Bergmann, Erika Bueno, Matilde A. Cordeiro, Syed Gul Abbas Shah Sani, Sripada M. Udupa, Irshad Ahmad Rather, Reyazul Rouf Mir, Vincent Vadez, George J. Vandemark, Pooran M. Gaur, Douglas R. Cook, Christine Boesch, Eric J. B. von Wettberg, Jana Kholová, R. Varma Penmetsa
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-25071-x

Whole genome sequencing in the search for genes associated with the control of SIV infection in the Mauritian macaque model
Cited by: 4
Author(s): Marc de Manuel, Takashi Shiina, Shingo Suzuki, Nathalie Dereuddre‐Bosquet, Henri‐Jean Garchon, Masayuki Tanaka, Nicolas Congy-Jolivet, Alice Aarnink, Roger Le Grand, Tomàs Marquès‐Bonet, Antoine Blancher
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-24481-1

Screen and Verification for Transgene Integration Sites in Pigs
Cited by: 9
Author(s): Linglei Ma, Yuzhe Wang, Haitao Wang, Yiqing Hu, Jingyao Chen, Tan Tan, Man Hu, Xiaojuan Liu, Ran Zhang, Yiming Xing, Yaofeng Zhao, Xiaoxiang Hu, Ning Li
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-26071-7

Indoor wet cells as a habitat for melanized fungi, opportunistic pathogens on humans and other vertebrates
Cited by: 13
Author(s): Xiaofang Wang, Wenying Cai, A. H. G. Gerrits van den Ende, Junmin Zhang, Ting Xie, Liyan Xi, Xiqing Li, Jiufeng Sun, Sybren de Hoog
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0117163

The Search for Therapeutic Bacteriophages Uncovers One New Subfamily and Two New Genera of Pseudomonas-Infecting Myoviridae
Cited by: 32
Author(s): H. Mathieu, Louis‐Marie Bobay, Anne Chevallereau, Emilie Saussereau, Pieter‐Jan Ceyssens, Laurent Debarbieux
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-32234-3

Diminished TLR2-TLR9 mediated CD4+ T cell responses are associated with increased inflammation in intraocular tuberculosis
Cited by: 8
Author(s): Ravi Sharma, Jyoti Sharma, Zafar K. Khan, Ajinkya Pattekar, Vishali Gupta, Reema Bansal, Kusum Sharma, Ashutosh N. Aggarwal, Amod Gupta, Naresh Sachdeva
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-34774-0

Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data
Cited by: 1
Author(s): Haojing Shao, Chenxi Zhou, Minh Duc Cao, Lachlan Coin
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-35304-8

Transcriptome analysis provides insight into prickle development and its link to defense and secondary metabolism in Solanum viarum Dunal
Cited by: 28
Author(s): Shatrujeet Pandey, Ridhi Goel, Anu Bhardwaj, Mehar Hasan Asif, Samir V. Sawant, Pratibha Misra
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-35996-y

iTRAQ-based quantitative tissue proteomic analysis of differentially expressed proteins (DEPs) in non-transgenic and transgenic soybean seeds
Cited by: 41
Author(s): Weixiao Liu, Wentao Xu, Li Liang, Meng‐Jie Dong, Yusong Wan, Xiaoyun He, Huang KunLun, Wujun Jin
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-36209-2

Miniscule differences between sex chromosomes in the giant genome of a salamander
Cited by: 23
Author(s): Melissa C. Keinath, Nataliya Timoshevskaya, Vladimir A. Timoshevskiy, S. Randal Voss, Jeramiah J. Smith
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-36211-8

Modulation of benzylisoquinoline alkaloid biosynthesis by overexpression berberine bridge enzyme in Macleaya cordata
Cited by: 12
Author(s): Peng Huang, Wei Liu, Min Xu, Ruolan Jiang, Liqiong Xia, Peng Wang, Han Li, Zhaoyang Tang, Qiyin Zheng, Jianguo Zeng
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-36573-z

Hidden mycota of pine needles: Molecular signatures from PCR-DGGE and Ribosomal DNA phylogenetic characterization of novel phylotypes
Cited by: 14
Author(s): Rajesh Jeewon, Quin S. Y. Yeung, Dhanushka N. Wannasinghe, Sillma Rampadarath, Daneshwar Puchooa, Hongkai Wang, Kevin D. Hyde
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-35983-3

SOX2 participates in spermatogenesis of Zhikong scallop Chlamys farreri
Cited by: 15
Author(s): Suzhe Liang, Danwen Liu, Xixi Li, Maokai Wei, Xiaobin Yu, Li Qi, Huixin Ma, Zhifeng Zhang, Zhenkui Qin
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-38733-1

Plasmid DNA contaminant in molecular reagents
Cited by: 20
Author(s): N. Wally, Martina Schneider, Jakob Thannesberger, Marie-Theres Kastner, Tamás Bakonyi, Stanislav Indik, Thomas Rattei, Janis R. Bedarf, Falk Hildebrand, John Lok Man Law, Juan Jovel, Christoph Steininger
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0004833

An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved
Cited by: 101
Author(s): Joseph J. Gillespie, Nicole C. Ammerman, Sheila M. Dreher-Lesnick, M. Sayeedur Rahman, Micah J. Worley, João Carlos Setúbal, Bruno W. S. Sobral, Abdu F. Azad
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0037104

De-Novo Transcriptome Sequencing of a Normalized cDNA Pool from Influenza Infected Ferrets
Cited by: 12
Author(s): Jeremy V. Camp, Thomas Svensson, Alexis McBrayer, Colleen B. Jonsson, Peter Liljeström, Carl E.G. Bruder
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0145861

Application of a Novel “Pan-Genome”-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains
Cited by: 8
Author(s): Diego Chaves‐Moreno, Melissa L. Wos‐Oxley, Ruy Jáuregui, Eva Medina, Alan Oxley, Dietmar H. Pieper
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-41936-1

Genomic insights into HSFs as candidate genes for high-temperature stress adaptation and gene editing with minimal off-target effects in flax
Cited by: 17
Author(s): Dipnarayan Saha, Pinaki Mukherjee, Sourav Dutta, Kanti Meena, S. K. Sarkar, Asit Baran Mandal, Tapash Dasgupta, Jiban Mitra
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0037405

HeT-A_pi1, a piRNA Target Sequence in the Drosophila Telomeric Retrotransposon HeT-A, Is Extremely Conserved across Copies and Species
Cited by: 3
Author(s): Natalia Petit, David Piñeyro, Elisenda López-Panadès, Elena Casacuberta, Arcadi Navarro
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0030943

Mitochondrial-Nuclear DNA Interactions Contribute to the Regulation of Nuclear Transcript Levels as Part of the Inter-Organelle Communication System
Cited by: 20
Author(s): Chris D. M. Rodley, Ralph S. Grand, Lutz R. Gehlen, Gary Greyling, MaryPat Jones, Justin M. O’Sullivan
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-019-43235-1

Thymosin β-4 is a novel regulator for primary cilium formation by nephronophthisis 3 in HeLa human cervical cancer cells
Cited by: 14
Author(s): Jae‐Wook Lee, Hong Sug Kim, Eun‐Yi Moon
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-43396-z

Proteomic and structural differences in lumpfish skin among the dorsal, caudal and ventral regions
Cited by: 7
Author(s): Deepti Manjari Patel, Katarína Bhide, Mangesh Bhide, Martin Haugmo Iversen, Monica F. Brinchmann
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0037355

A Predictive Model of Intein Insertion Site for Use in the Engineering of Molecular Switches
Cited by: 15
Author(s): James R. Apgar, M. Kyle Ross, Xiao Zuo, Sarah Dohle, Derek Sturtevant, Binzhang Shen, Humberto de la Vega, Philip A. Lessard, G. Lázár, R. Michael Raab
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-019-46185-w

Activation of The Phosphatidylcholine to Lysophosphatidylcholine Pathway Is Associated with Osteoarthritis Knee Cartilage Volume Loss Over Time
Cited by: 31
Author(s): Guangju Zhai, Jean‐Pierre Pelletier, Ming Liu, Dawn Aitken, Edward Randell, Proton Rahman, Graeme Jones, Johanne Martel‐Pelletier
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-46321-6

The rpl23 gene and pseudogene are hotspots of illegitimate recombination in barley chloroplast mutator seedlings
Cited by: 5
Author(s): Franco Lencina, Alejandra Landau, M. Petterson, M. Pacheco, Ken Kobayashi, Alberto R. Prina
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20225576

Tissue-Wide Gene Expression Analysis of Sodium/Phosphate Co-Transporters in Pigs
Cited by: 13
Author(s): Aisanjiang Wubuli, Henry Reyer, Eduard Muráni, Siriluck Ponsuksili, Petra Wolf, Michael Oster, Klaus Wimmers
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20236035

A Paradigm in Immunochemistry, Revealed by Monoclonal Antibodies to Spatially Distinct Epitopes on Syntenin-1
Cited by: 5
Author(s): I. R. Johnson, Alexandra Sorvina, Jessica M. Logan, Courtney Moore, Jessica K. Heatlie, Emma J. Parkinson-Lawrence, Stavros Selemidis, John O’Leary, Lisa M. Butler, Doug A. Brooks
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50194-0

Functional metagenomic analysis of dust-associated microbiomes above the Red Sea
Cited by: 22
Author(s): Nojood Aalismail, David Kamanda Ngugi, Rubén Díaz‐Rúa, Intikhab Álam, Michael Cusack, Carlos M. Duarte
Software Mentions: 1
Published: almost 6 years ago

10.2174/1874285800802010001

Isolation of the Bacteriophage DinoHI from Dichelobacter nodosus and its Interactions with other Integrated Genetic Elements
Cited by: 7
Author(s): Brian F. Cheetham, Dane Parker, Garry A. Bloomfield, Bruce E. Shaw, M. Sutherland, Jessica Hyman, Jenifer Hope Druitt, Ruth M. Kennan, Julian I. Rood, Margaret Katz
Software Mentions: 1
Published: over 17 years ago

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Papers Mentioning blast 1,819