Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: blast

https://packages.ecosyste.ms/registries/pypi.org/packages/blast

a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
3 versions
Latest release: over 12 years ago
120 downloads last month

Papers Mentioning blast 1,819

10.1186/s13227-015-0026-2
Sexually dimorphic gene expression in the lateral eyes of Euphilomedes carcharodonta (Ostracoda, Pancrustacea)
Cited by: 4
Author(s): Andrea Sajuthi, Brenna Carrillo-Zazueta, Briana Hu, Anita Wang, Logan Brodnansky, John Mayberry, Ajna S. Rivera
Software Mentions: 1
Published: about 9 years ago
10.1111/j.1525-142X.2011.00489.x
Evolution of the Alx homeobox gene family: parallel retention and independent loss of the vertebrate Alx3 gene
Cited by: 40
Author(s): Imelda M. McGonnell, Anthony Graham, Jo Richardson, Jennifer L. Fish, Michael J. Depew, Chris T. Dee, Peter W.H. Holland, Tsuguhiro Takahashi
Software Mentions: 1
Published: over 13 years ago
10.12688/f1000research.19803.2
Validation of a commercial antibody to detect endogenous human nicastrin by immunoblot
Cited by: 0
Author(s): Rosana Mesa, Elisha D.O. Roberson
Software Mentions: 1
Published: almost 5 years ago
10.1002/2211-5463.12597
<scp>YAP</scp>1 overexpression is associated with poor prognosis of breast cancer patients and induces breast cancer cell growth by inhibiting <scp>PTEN</scp>
Cited by: 42
Author(s): Lili Guo, Yu-Tang Chen, Jun Luo, Jianbao Zheng, Guoliang Shao
Software Mentions: 1
Published: almost 6 years ago
10.1002/2211-5463.13009
Molecular dynamics provides new insights into the mechanism of calcium signal transduction and interdomain interactions in cardiac troponin
Cited by: 5
Author(s): Georgi Z. Genchev, Minae Kobayashi, Tomoyoshi Kobayashi, Hui Liu
Software Mentions: 1
Published: over 3 years ago
10.1002/2211-5463.12917
Paclitaxel induces apoptosis through the TAK1–JNK activation pathway
Cited by: 15
Author(s): Yuwei Di, Zhuo-Sheng Li, Shangwu Xiong, Ge Huang, Yan Luo, Tie-Ying Huo, Mi Zhou, Yi Zheng
Software Mentions: 1
Published: over 4 years ago
10.1002/2211-5463.12510
The C‐terminal segment of collagenase in <i>Grimontia hollisae</i> binds collagen to enhance collagenolysis
Cited by: 7
Author(s): Keisuke Tanaka, Naoko Teramura, Osamu Hayashida, Katsumasa Iijima, Teru Okitsu, Shunji Hattori
Software Mentions: 1
Published: about 6 years ago
10.1111/1574-6941.12165
Microbial survey of the mummies from the Capuchin Catacombs of Palermo, Italy: biodeterioration risk and contamination of the indoor air
Cited by: 77
Author(s): Güadalupe Piñar, Dario Piombino–Mascali, Frank Maixner, Albert Zink, Katja Sterflinger
Software Mentions: 1
Published: about 11 years ago
10.1111/j.1574-6968.2011.02260.x
Location, synthesis and function of glycolipids and polyglycerolphosphate lipoteichoic acid in Gram-positive bacteria of the phylum Firmicutes
Cited by: 155
Author(s): Nathalie T. Reichmann, Angelika Gründling
Software Mentions: 1
Published: over 13 years ago
10.1111/j.1574-6976.2008.00141.x
Computational and experimental approaches to chart the<i>Escherichia coli</i>cell-envelope-associated proteome and interactome
Cited by: 51
Author(s): J. Javier Díaz-Mejía, Mohan Babu, Andrew Emili
Software Mentions: 1
Published: almost 16 years ago
10.1111/j.1567-1364.2008.00367.x
A TSC22-like motif defines a novel antiapoptotic protein family
Cited by: 33
Author(s): Chamel Khoury, Zhao Yang, Xiao Yu Li, Marissa Vignali, Stanley Fields, Michael T. Greenwood
Software Mentions: 1
Published: over 16 years ago
10.3390/foods9060686
Comparison of Antimicrobial Resistance and Pan-Genome of Clinical and Non-Clinical Enterococcus cecorum from Poultry Using Whole-Genome Sequencing
Cited by: 11
Author(s): Poonam Sharma, Sushim K. Gupta, John B. Barrett, Lari M. Hiott, Tiffanie A. Woodley, Subhashinie Kariyawasam, Jonathan G. Frye, Charlene R. Jackson
Software Mentions: 1
Published: over 4 years ago
10.3390/foods10092112
Differentiation of Lacticaseibacillus zeae Using Pan-Genome Analysis and Real-Time PCR Method Targeting a Unique Gene
Cited by: 4
Author(s): Eiseul Kim, Seung-Min Yang, Hae‐Yeong Kim
Software Mentions: 1
Published: about 3 years ago
10.3389/fbioe.2021.665248
The Injury Mechanism of Traumatic Amputation
Cited by: 5
Author(s): Iain Rankin, Thuy-Tien Nguyen, Louise McMenemy, J Clasper, Spyros D. Masouros
Software Mentions: 1
Published: over 3 years ago
10.3389/fbioe.2021.653800
Mechanism of Laccase Induction via Emodin in Trametes versicolor
Cited by: 2
Author(s): Wu Lin, Xuecai Luo, Pei Yu, Zai Zheng, Ruochun Yin, Xiaohe Tian, Liang Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fbioe.2020.00960
A New Understanding of the Mechanism of Injury to the Pelvis and Lower Limbs in Blast
Cited by: 7
Author(s): Iain Rankin, Thuy-Tien Nguyen, Diagarajen Carpanen, J Clasper, Spyros D. Masouros
Software Mentions: 1
Published: over 4 years ago
10.3389/fcell.2020.632957
Change in the Single Amino Acid Site 83 in Rabies Virus Glycoprotein Enhances the BBB Permeability and Reduces Viral Pathogenicity
Cited by: 5
Author(s): Chunfu Li, Yongzhi Wang, Huiting Liu, Xinghua Zhang, Baolige Dalai, Shihua Zhao, Wei Hu, Yang Yang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcimb.2016.00036
Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape
Cited by: 13
Author(s): Stephanie Nadya, Pascal Delaquis, Jessica Chen, Kevin Allen, Roger P. Johnson, Kim Ziebell, Chad R. Laing, Victor P. J. Gannon, Susan Bach, Edward Topp
Software Mentions: 1
Published: over 8 years ago
10.3389/fcimb.2020.00149
GCN2-Like Kinase Modulates Stress Granule Formation During Nutritional Stress in Trypanosoma cruzi
Cited by: 7
Author(s): Amaranta Muniz Malvezzi, Mirella Aricó, Normanda Souza-Melo, Gregory Pedroso Dos Santos, Paula Bittencourt‐Cunha, Fabíola Holetz, Sérgio Schenkman
Software Mentions: 1
Published: over 4 years ago
10.3389/fcimb.2020.00286
The Alterations of Vaginal Microbiome in HPV16 Infection as Identified by Shotgun Metagenomic Sequencing
Cited by: 17
Author(s): Qian Yang, Yaping Wang, Xinyi Wei, Jiawei Zhu, Xinyu Wang, Xing Xie, Weiguo Lü
Software Mentions: 1
Published: over 4 years ago
10.3389/fncel.2015.00389
Vesicular expression and release of ATP from dopaminergic neurons of the mouse retina and midbrain
Cited by: 39
Author(s): Tracy Ho, Andrew I Jobling, Ursula Greferath, Trinette Chuang, Archana Ramesh, Erica L. Fletcher, Kirstan A. Vessey
Software Mentions: 1
Published: about 9 years ago
10.3389/fgene.2020.00131
The Genetic Landscape of Dystrophin Mutations in Italy: A Nationwide Study
Cited by: 46
Author(s): Marcella Neri, Rachele Rossi, Cecilia Trabanelli, A. Di Mauro, Rita Selvatici, Maria Sofia Falzarano, N. Spedicato, Alice Margutti, Paola Rimessi, F. Fortunato, M. Fabris, Francesca Gualandi, Giacomo Pietro Comi, Silvana Tedeschi, Manuela Seia, Chiara Fiorillo, Monica Traverso, Claudio Bruno, Emiliano Giardina, Maria Rosaria Piemontese, Giuseppe Merla, Milena Cau, Monica Marica, Carmela Scuderi, Eugenia Borgione, Alessandra Tessa, Guja Astrea, Filippo M. Santorelli, Luciano Merlini, Marina Mora, Pia Bernasconi, Sara Gibertini, Valeria Sansone, Tiziana Mongini, Angela Berardinelli, Antonella Pini, Rocco Liguori, Massimiliano Filosto, Sonia Messina, Gianluca Vita, Antonio Toscano, Marika Pane, Serenella Servidei, Elena Pegoraro, Luca Bello, Lorena Travaglini, Enrico Bertini, Adele D’Amico, Manuela Ergoli, Luisa Politano, Annalaura Torella, Vincenzo Nigro, Eugenio Mercuri, Alessandra Ferlini
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2019.01403
Whole Transcriptome Analysis of Mesenchyme Tissue in Sika Deer Antler Revealed the CeRNAs Regulatory Network Associated With Antler Development
Cited by: 14
Author(s): Ruobing Han, Lei Han, Shengnan Wang, Heping Li
Software Mentions: 1
Published: almost 5 years ago
10.3389/fgene.2019.01014
Characterization and Application of EST-SSR Markers Developed From the Transcriptome of Amentotaxus argotaenia (Taxaceae), a Relict Vulnerable Conifer
Cited by: 11
Author(s): Xiaoxian Ruan, Zhen Wang, Ting Wang, Yingjuan Su
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2018.00155
A Census of Tandemly Repeated Polymorphic Loci in Genic Regions Through the Comparative Integration of Human Genome Assemblies
Cited by: 9
Author(s): Loredana M. Genovese, Filippo Geraci, Lucia Corrado, Eleonora Mangano, Romina D’Aurizio, Roberta Bordoni, Marco Severgnini, Giovanni Manzini, Gianluca De Bellis, Sandra D’Alfonso, Marco Pellegrini
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2019.00991
A Chromosome-Scale Reference Assembly of a Tibetan Loach, Triplophysa siluroides
Cited by: 9
Author(s): Liandong Yang, Ying Wang, Tai Wang, Shengchang Duan, Yang Dong, Yanping Zhang, Shunping He
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2018.00407
Taxonomically Restricted Genes Are Fundamental to Biology and Evolution
Cited by: 34
Author(s): Brian R. Johnson
Software Mentions: 1
Published: about 6 years ago
10.3389/fgene.2019.00999
An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs
Cited by: 82
Author(s): Xiaoli Dong, Marc Strous
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2021.695791
Identification of Gray Leaf Spot Disease Candidate Gene in Narrow-Leafed Lupin (Lupinus angustifolius L.)
Cited by: 1
Author(s): Gaofeng Zhou, Huaan Yang, Daniel Renshaw, Meilin Zou, Geoff Thomas, Chengdao Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2018.01079
Diversity of Immunoglobulin Light Chain Genes in Non-Teleost Ray-Finned Fish Uncovers IgL Subdivision into Five Ancient Isotypes
Cited by: 5
Author(s): Sergey V. Guselnikov, Konstantin Baranov, Alexander M. Najakshin, Ludmila V. Mechetina, N. A. Chikaev, Alex Makunin, Sergey V. Kulemzin, Daria A. Andreyushkova, Matthias Stöck, Sven Wuertz, Jörn Geßner, Wesley C. Warren, Manfred Schartl, Vladimir A. Trifonov, Alexander V. Taranin
Software Mentions: 1
Published: over 6 years ago
10.3389/fimmu.2020.595970
Development of Patient-Derived Human Monoclonal Antibodies Against Nucleocapsid Protein of Severe Acute Respiratory Syndrome Coronavirus 2 for Coronavirus Disease 2019 Diagnosis
Cited by: 11
Author(s): Li Zhang, Binyang Zheng, Xingsu Gao, Libo Zhang, Hongxin Pan, Yong Qiao, Hong Qiao, Fengcai Zhu
Software Mentions: 1
Published: about 4 years ago
10.3389/fimmu.2019.00696
The Marine Mammal Class II Major Histocompatibility Complex Organization
Cited by: 13
Author(s): André Luiz Alves de Sá, Breanna Breaux, Tibério Cesar Tortola Burlamaqui, Thaddeus C. Deiss, Leonardo Sena, Michael F. Criscitiello, Maria Paula Cruz Schneider
Software Mentions: 1
Published: over 5 years ago
10.3389/fmed.2021.737602
Whole Genome Sequencing of SARS-CoV-2 Strains in COVID-19 Patients From Djibouti Shows Novel Mutations and Clades Replacing Over Time
Cited by: 4
Author(s): Ikram Omar Osman, Anthony Levasseur, Ludivine Bréchard, Iman Abdillahi Hassan, Idil Salah Abdillahi, Zeinab Ali Waberi, Jérémy Delerce, Marielle Bedotto, Linda Houhamdi, Pierre‐Edouard Fournier, Philippe Colson, Mohamed Houmed Aboubaker, Didier Raoult, Christian Devaux
Software Mentions: 1
Published: about 3 years ago
10.3389/fmicb.2018.00920
Distribution and Genetic Characteristics of SXT/R391 Integrative Conjugative Elements in Shewanella spp. From China
Cited by: 17
Author(s): Yujie Fang, Yonglu Wang, Zhenpeng Li, Zongdong Liu, Xinyue Li, Baowei Diao, Biao Kan, Duochun Wang
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2018.01313
Influence of the Potential Carbon Sources for Field Denitrification Beds on Their Microbial Diversity and the Fate of Carbon and Nitrate
Cited by: 22
Author(s): Victoria Grießmeier, Johannes Gescher
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2018.02249
Sarconesin: Sarconesiopsis magellanica Blowfly Larval Excretions and Secretions With Antibacterial Properties
Cited by: 17
Author(s): Andrea Díaz-Roa, Manuel A. Patarroyo, Felio J. Bello, Pedro I. da Silva
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2018.02216
Genomic Characterization and Probiotic Potency of Bacillus sp. DU-106, a Highly Effective Producer of L-Lactic Acid Isolated From Fermented Yogurt
Cited by: 29
Author(s): Pan Li, Wenni Tian, Zhuo Jiang, Zuanhao Liang, Xueyin Wu, Bing Du
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2018.00603
The Road to Infection: Host-Microbe Interactions Defining the Pathogenicity of Streptococcus bovis/Streptococcus equinus Complex Members
Cited by: 48
Author(s): Christoph Jans, Annemarie Boleij
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2012.00327
Molecular signatures for the PVC clade (Planctomycetes, Verrucomicrobia, Chlamydiae, and Lentisphaerae) of bacteria provide insights into their evolutionary relationships
Cited by: 31
Author(s): Radhey S. Gupta, Vaibhav Bhandari, Hafiz Sohail Naushad
Software Mentions: 1
Published: almost 13 years ago
10.3389/fmicb.2020.608752
Functional and Genomic Characterization of Ligilactobacillus salivarius TUCO-L2 Isolated From Lama glama Milk: A Promising Immunobiotic Strain to Combat Infections
Cited by: 9
Author(s): Sandra Quilodrán-Vega, Leonardo Albarracín, Flavia I. Mansilla, Lorena Paola Arce, Bingwen Zhou, Aminul Islam, Mikado Tomokiyo, Imad Al Kassaa, Yoshihito Suda, Haruki Kitazawa, Julio Villena
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2016.00538
Identification and Characterization of a Cleavage Site in the Proteolysis of Orf Virus 086 Protein
Cited by: 3
Author(s): Xiaoping Wang, Bin Xiao, Jiafeng Zhang, Daxiang Chen, Wei Li, Ming Li, Wenbo Hao, Shuhong Luo
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2019.00605
Membrane Sphingolipids Regulate the Fitness and Antifungal Protein Susceptibility of Neurospora crassa
Cited by: 21
Author(s): Anna Huber, Gregor Oemer, Nermina Malanovic, Karl Lohner, Laura Kovács, Willi Salvenmoser, Johannes Zschocke, Markus A. Keller, Florentine Marx
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2018.02864
Purification, Characterization and in vitro Evaluation of Polymyxin A From Paenibacillus dendritiformis: An Underexplored Member of the Polymyxin Family
Cited by: 11
Author(s): Manoj Jangra, Harmandeep Kaur Randhawa, Manpreet Kaur, Anugya Srivastava, Navdezda Maurya, Prashant P. Patil, Pallavi Jaswal, Ashish Arora, Manoj Raje, Hemraj Nandanwar
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2020.01993
Development and Application of a Prophage Integrase Typing Scheme for Group B Streptococcus
Cited by: 12
Author(s): Chiara Crestani, Taya Forde, Ruth N. Zadoks
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2021.599562
Antigenic Evolution on a Global Scale Reveals the Potential Natural Selection of Severe Acute Respiratory Syndrome-Coronavirus 2 by Pre-existing Cross-Reactive T-Cell Immunity
Cited by: 4
Author(s): Chengdong Zhang, Xuanxuan Jin, Xianyang Chen, Li Qiu, Qibin Leng, Tianyi Qiu
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2017.01990
Involvement of NpdA, a Putative 2-Nitropropane Dioxygenase, in the T3SS Expression and Full Virulence in Ralstonia solanacearum OE1-1
Cited by: 6
Author(s): Weiqi Zhang, Jing Li, Yu Tang, Kai Chen, Xiaojun Shi, Kouhei Ohnishi, Yong Zhang
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2014.00504
Human herpesviruses-encoded dUTPases: a family of proteins that modulate dendritic cell function and innate immunity
Cited by: 29
Author(s): Maria E. Ariza, Ronald Glaser, Marshall V. Williams
Software Mentions: 1
Published: about 10 years ago
10.3389/fmicb.2021.676113
First Report of Coexistence of blaSFO–1 and blaNDM–1 β-Lactamase Genes as Well as Colistin Resistance Gene mcr-9 in a Transferrable Plasmid of a Clinical Isolate of Enterobacter hormaechei
Cited by: 12
Author(s): Wenxiu Ai, Ying Zhou, Bingjie Wang, Qing Zhan, Longhua Hu, Yanling Xu, Yinjuan Guo, Liangxing Wang, Fangyou Yu, Xiaolong Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2019.02565
Root-Colonizing Endophytic Fungi of the Dominant Grass Stipa krylovii From a Mongolian Steppe Grassland
Cited by: 22
Author(s): Dániel G. Knapp, Ildikó Imrefi, Enkhtuul Boldpurev, Sándor Csíkos, Galiya Akhmetova, Péter János Berek-Nagy, Burenjargal Otgonsuren, Gábor M. Kovács
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2019.02700
Novel Isoprene-Degrading Proteobacteria From Soil and Leaves Identified by Cultivation and Metagenomics Analysis of Stable Isotope Probing Experiments
Cited by: 27
Author(s): Nasmille L Larke-Mejía, Andrew T. Crombie, Jennifer Pratscher, Terry J. McGenity, J. Colin Murrell
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2020.01573
Kinetics of Phenol Biodegradation by Heavy Metal Tolerant Rhizobacteria Glutamicibacter nicotianae MSSRFPD35 From Distillery Effluent Contaminated Soils
Cited by: 31
Author(s): Purushothaman Duraisamy, Jegan Sekar, Anu D. Arunkumar, V. R. Prabavathy
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2016.00792
Comparative Analysis of Genomics and Proteomics in the New Isolated Bacillus thuringiensis X022 Revealed the Metabolic Regulation Mechanism of Carbon Flux Following Cu2+ Treatment
Cited by: 9
Author(s): Meifang Quan, Junyan Xie, Xuemei Liu, Yang Li, Jie Rang, Tong Zhang, Fengjuan Zhou, Liqiu Xia, Shengbiao Hu, Yunjun Sun, Xuezhi Ding
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2016.01757
Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics
Cited by: 10
Author(s): Roger Karlsson, Kaisa Thorell, Shaghayegh Hosseini, Diarmuid T. Kenny, Carina Sihlbom, Åsa Sjöling, Anders Karlsson, Intawat Nookaew
Software Mentions: 1
Published: about 8 years ago
10.3389/fmicb.2020.00183
Host Transcriptional Response of Sclerotinia sclerotiorum Induced by the Mycoparasite Coniothyrium minitans
Cited by: 4
Author(s): Huizhang Zhao, Ting Zhou, Jiǎtāo Xiè, Jiāsēn Chéng, Dàohóng Jiāng, Yànpíng Fù
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2019.00460
Discovery of Novel Antibiotic Resistance Determinants in Forest and Grassland Soil Metagenomes
Cited by: 23
Author(s): Inka M. Willms, Aysha Kamran, Nils Frederik Aßmann, Denis Krone, Simon Henning Bolz, Fabian Fiedler, Heiko Nacke
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2019.01351
Evolutionary Analysis of Unicellular Species in Chlamydomonadales Through Chloroplast Genome Comparison With the Colonial Volvocine Algae
Cited by: 13
Author(s): Yuxin Hu, Weiqin Xing, Song Huang, Huan Zhu, Guoxiang Liu, Zhengyu Hu
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2018.03047
Understand the Potential Role of Aureobasidium pullulans, a Resident Microorganism From Grapevine, to Prevent the Infection Caused by Diplodia seriata
Cited by: 35
Author(s): Cátia Pinto, Valéria Custódio, Mariana Nunes, Aurélie Songy, Fanja Rabenoelina, Barbara Courteaux, Christophe Clément, Ana Catarina Gomes, Florence Fontaine
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2015.00675
Detection of Mycobacterium tuberculosis in extrapulmonary biopsy samples using PCR targeting IS6110, rpoB, and nested-rpoB PCR Cloning
Cited by: 14
Author(s): Hossein Meghdadi, Azar Dokht Khosravi, Ataallah Ghadiri, Amir Hossein Sina, Ameneh Alami
Software Mentions: 1
Published: over 9 years ago
10.3389/fmicb.2020.01600
The Exopolysaccharide Cepacian Plays a Role in the Establishment of the Paraburkholderia phymatum – Phaseolus vulgaris Symbiosis
Cited by: 12
Author(s): Yilei Liu, Barbara Bellich, Sebastian Hug, Leo Eberl, Paola Cescutti, Gabriella Pessi
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.00663
Metagenomic Sequencing of Diamondback Moth Gut Microbiome Unveils Key Holobiont Adaptations for Herbivory
Cited by: 111
Author(s): Xiaofeng Xia, Geoff M. Gurr, Liette Vasseur, Dan Zheng, Zhong Huang, Bingcai Qin, Junhan Lin, Yue Wang, Fengqin Song, Yong Li, Hailan Lin, Minsheng You
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2021.706700
Virulent Drexlervirial Bacteriophage MSK, Morphological and Genome Resemblance With Rtp Bacteriophage Inhibits the Multidrug-Resistant Bacteria
Cited by: 3
Author(s): Muhammad Saleem Iqbal Khan, Xiangzheng Gao, Keying Liang, Shengsheng Mei, Jin-biao Zhan
Software Mentions: 1
Published: about 3 years ago
10.3389/fmicb.2020.600576
Dual Microbial Inoculation, a Game Changer? – Bacterial Biostimulants With Multifunctional Growth Promoting Traits to Mitigate Salinity Stress in Spring Mungbean
Cited by: 32
Author(s): Kailash Chand Kumawat, Poonam Sharma, Sharon Nagpal, Rajeev Kumar Gupta, Asmita Sirari, Ramakrishnan M. Nair, H. Bindumadhava, Surender Singh
Software Mentions: 1
Published: almost 4 years ago
10.1590/1678-4685-GMB-2017-0376
Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction
Cited by: 3
Author(s): Wellington Pine Omori, Daniel Guariz Pinheiro, Luciano Takeshi Kishi, Camila Cesário Fernandes, Gabriela Cabral Fernandes, Elisângela Soares Gomes-Pepe, Claudio Damasceno Pavani, Eliana Gertrudes de Macedo Lemos, Jackson Antônio Marcondes de Souza
Software Mentions: 1
Published: over 5 years ago
10.1128/genomeA.00572-13
Genome Sequence of Paenibacillus polymyxa ATCC 12321, a Promising Strain for Optically Active ( R , R )-2,3-Butanediol Production
Cited by: 4
Author(s): Yingjia Tong, Xiao‐Jun Ji, Lu-Gang Liu, Meng-Qiu Shen, He Huang
Software Mentions: 1
Published: about 11 years ago
10.1128/genomeA.01106-13
Complete Genome Sequence of Pediococcus pentosaceus Strain SL4
Cited by: 12
Author(s): Shruti Harnal Dantoft, Eliza Maria Bielak, Jae‐Gu Seo, Myung Jun Chung, Peter Ruhdal Jensen
Software Mentions: 1
Published: almost 11 years ago
10.1128/genomeA.00013-17
Genome Sequence of Deinococcus marmoris PAMC 26562 Isolated from Antarctic Lichen
Cited by: 3
Author(s): Jung-Hee Kim, Kae Kyoung Kwon, Byung Kwon Kim, Soon Gyu Hong, Hyun-Myung Oh
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00778-17
Two Complete Genome Sequences of Squash mosaic virus from 20-Year-Old Cucurbit Leaf Samples from Australia
Cited by: 8
Author(s): Solomon Maina, Owain Edwards, R. A. C. Jones
Software Mentions: 1
Published: over 7 years ago
10.1186/gb-2005-6-13-r113
Cited by: 14
Author(s): Ruth Van Hellemont, Pieter Monsieurs, Gert Thijs, Bart De Moor, Yves Van de Peer, Kathleen Marchal
Software Mentions: 1
Published: almost 20 years ago
10.1186/gb-2007-8-3-r36
New genes in the evolution of the neural crest differentiation program
Cited by: 41
Author(s): Juan Ramón Martı́nez-Morales, Thorsten Henrich, Mirana Ramialison, Joachim Wittbrodt
Software Mentions: 1
Published: almost 18 years ago
10.1186/gb-2008-9-10-r152
Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
Cited by: 187
Author(s): Yutaka Satou, Katsuhiko Mineta, Michio Ogasawara, Yasunori Sasakura, Eiichi Shoguchi, Koji Ueno, Lixy Yamada, Jun Matsumoto, Jessica Wasserscheid, Ken Dewar, Graham B. Wiley, Simone Macmil, Bruce A. Roe, Robert W. Zeller, Kenneth E.M. Hastings, Patrick Lemaire, Erika Lindquist, Toshinori Endo, Kohji Hotta, Kazuo Inaba
Software Mentions: 1
Published: almost 17 years ago
10.1186/gb-2010-11-7-r71
Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays
Cited by: 54
Author(s): Adnane Sellam, Hervé Hogues, Christopher Askew, Faïza Tebbji, Marco van het Hoog, Hugo Lavoie, Carol A. Kumamoto, Malcolm Whiteway, André Nantel
Software Mentions: 1
Published: almost 15 years ago
10.1186/gb-2011-12-11-r116
Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine
Cited by: 333
Author(s): Peng Zheng, Yongliang Xia, Guohua Xiao, Chao Xiong, Xiao Hu, Siwei Zhang, Huajun Zheng, Yin Huang, Yan Zhou, Shengyue Wang, Guoping Zhao, Xingzhong Liu, Raymond J. St. Leger, Wang Chengshu
Software Mentions: 1
Published: almost 14 years ago
10.1016/j.gpb.2018.12.003
Antibiotic Treatment Drives the Diversification of the Human Gut Resistome
Cited by: 51
Author(s): Jun Li, Elizabeth A. Rettedal, Eric van der Helm, Mostafa Mostafa Hashim Ellabaan, Gianni Panagiotou, Morten Otto Alexander Sommer
Software Mentions: 1
Published: almost 6 years ago
10.1093/gigascience/gix094
Draft genome of the gayal, Bos frontalis
Cited by: 19
Author(s): Mingshan Wang, Yan Zeng, Xiao Wang, Wei Nie, Jinhuan Wang, Wencheng Su, Newton O. Otecko, Zijun Xiong, Sheng Wang, Kaixing Qu, Shouqing Yan, Minmin Yang, Wen Wang, Yang Dong, Dongdong Wu, Yaping Zhang
Software Mentions: 1
Published: about 7 years ago
10.5539/gjhs.v8n6p41
Lack of Association Between rs17568 Polymorphism in OX40 Gene and Myocardial Infarction, Southern of Iran
Cited by: 5
Author(s): Mehrnoosh Maalhagh, Mohammad Reza Shojaei, Saiedeh Erfanian, Abdolreza Sotoodeh Jahromi, Mohammad Sadegh Sanie, Ali Reza Yusefi, Hassan Zabetian, Hossein Hakimelahi, Abdoulhossain Madani, Mohammad Hojjat‐Farsangi
Software Mentions: 1
Published: about 9 years ago
10.1186/1757-4749-3-9
Molecular basis of virulence in clinical isolates of Escherichia coli and Salmonella species from a tertiary hospital in the Eastern Cape, South Africa
Cited by: 69
Author(s): Mary A. Bisi-Johnson, Larry Chikwelu, Sandeep Vasaikar, Kamaldeen Baba, Toshio Hattori
Software Mentions: 1
Published: almost 14 years ago
10.1186/s13099-017-0177-x
Capsular polysaccharide inhibits adhesion of Bifidobacterium longum 105-A to enterocyte-like Caco-2 cells and phagocytosis by macrophages
Cited by: 22
Author(s): Amin Tahoun, Hisayoshi Masutani, Hanem El-Sharkawy, Trudi Gillespie, Ryo Honda, Kazuo Kuwata, Mizuho Inagaki, Tomio Yabe, Izumi Nomura, Tomohiko Suzuki
Software Mentions: 1
Published: over 7 years ago
10.1016/j.heliyon.2021.e06780
Targeted metagenomics using next generation sequencing in laboratory diagnosis of culture negative endophthalmitis
Cited by: 9
Author(s): Deepika Mishra, Gita Satpathy, Rohan Chawla, Daizy Paliwal, Subrat Kumar Panda
Software Mentions: 1
Published: over 3 years ago
10.1038/s41438-021-00539-6
The chromosome-level Hemerocallis citrina Borani genome provides new insights into the rutin biosynthesis and the lack of colchicine
Cited by: 21
Author(s): Zhixing Qing, Jinghong Liu, Xiao Su Yi, Xiubin Liu, Guoqing Hu, Jia Lao, Wei He, Zihui Yang, Xiaoyan Zou, Mengshan Sun, Peng Huang, Jianguo Zeng
Software Mentions: 1
Published: over 3 years ago
10.1111/irv.12185
Genetic variability of human metapneumo- and bocaviruses in children with respiratory tract infections
Cited by: 10
Author(s): Vasiliki Pogka, Afroditi Moutousi, Athanasios Kossyvakis, Antonios Kalliaropoulos, Dionyssios N. Sgouras, Maria Giannaki, Αndreas Mentis
Software Mentions: 1
Published: about 11 years ago
10.3390/insects11100680
Tracking the Distribution and Burst of Nuclear Mitochondrial DNA Sequences (NUMTs) in Fig Wasp Genomes
Cited by: 10
Author(s): Jianxia Wang, Jing Liu, Yun-Heng Miao, Dawei Huang, Jin‐Hua Xiao
Software Mentions: 1
Published: about 4 years ago
10.1161/JAHA.112.002121
Molecular Mechanisms of Experimental Salt‐Sensitive Hypertension
Cited by: 15
Author(s): Bina Joe, Joseph I. Shapiro
Software Mentions: 1
Published: over 12 years ago
10.1186/s12929-014-0064-4
ADI1, a methionine salvage pathway enzyme, is required for Drosophila fecundity
Cited by: 13
Author(s): He Yen Chou, Yu Hung Lin, Guan Lin Shiu, Hsiang-Yu Tang, Mei Cheng, Ming‐Shi Shiao, Li‐Mei Pai
Software Mentions: 1
Published: over 10 years ago
10.1111/jcmm.13148
RNomic identification and evaluation of npcTB_6715, a non-protein-coding RNA gene as a potential biomarker for the detection of<i>Mycobacterium tuberculosis</i>
Cited by: 4
Author(s): Priyatharisni Kanniappan, Siti Aminah Ahmed, Ganeswrie Rajasekaram, Marimuthu Citartan, Ewe Seng Ch’ng, Li Pin Lee, Carsten A. Raabe, Timofey S. Rozhdestvensky, Thean‐Hock Tang
Software Mentions: 1
Published: over 7 years ago
10.1111/jcmm.16265
Long non‐coding RNA LINC00607 silencing exerts antioncogenic effects on thyroid cancer through the CASP9 Promoter methylation
Cited by: 9
Author(s): Lanzhen Li, Zhongcheng Gao, Lei Zhao, Peiyou Ren, Haoming Shen
Software Mentions: 1
Published: over 3 years ago
10.1111/jeb.12687
The<i>achaete</i>‐<i>scute</i>complex in Diptera: patterns of noncoding sequence evolution
Cited by: 8
Author(s): Bárbara Negre, Patricia Simpson
Software Mentions: 1
Published: about 9 years ago
10.1093/jxb/erv296
Developmentally regulated<i>HEART STOPPER</i>, a mitochondrially targeted L18 ribosomal protein gene, is required for cell division, differentiation, and seed development in<i>Arabidopsis</i>
Cited by: 16
Author(s): Hongyu Zhang, Ming Luo, Robert C. Day, Mark J. Talbot, Aneta Ivanova, Anthony R. Ashton, Abed Chaudhury, Richard C. Macknight, Mária Hrmová, Anna M. Koltunow
Software Mentions: 1
Published: over 9 years ago
10.1093/jxb/erw244
Dual transcriptome analysis reveals insights into the response to<i>Rice black-streaked dwarf virus</i>in maize
Cited by: 39
Author(s): Yu Zhou, Zhennan Xu, Canxing Duan, Yanping Chen, Qingchang Meng, Juan Wu, Hao Zhang, Zhenhua Wang, Mingshun Li, Hongjun Yong, Degui Zhang, Shihuang Zhang, Jianfeng Weng, Xinhai Li
Software Mentions: 1
Published: over 8 years ago
10.1093/jxb/erw500
A novel inversion in the chloroplast genome of marama (Tylosema esculentum)
Cited by: 25
Author(s): Yunsoo Kim, Christopher A. Cullis
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.ppat.1000923
Analysis of Virion Structural Components Reveals Vestiges of the Ancestral Ichnovirus Genome
Cited by: 118
Author(s): Anne Nathalie Volkoff, Véronique Jouan, Serge Urbach, Sylvie Samain, Max Bergoin, Patrick Wincker, Edith Demettre, Clément François, Bertille Provost, F. Coulibaly, Fabrice Legeai, Catherine Béliveau, Michel Cusson, Gábor Gyapay, Jean‐Michel Drezen
Software Mentions: 1
Published: over 14 years ago
10.3389/fvets.2017.00139
Comparison of the Luminal and Mucosa-Associated Microbiota in the Colon of Pigs with and without Swine Dysentery
Cited by: 44
Author(s): Eric Burrough, Bailey Arruda, Paul J. Plummer
Software Mentions: 1
Published: about 7 years ago
10.3390/ijms22010253
Insight into the bZIP Gene Family in Solanum tuberosum: Genome and Transcriptome Analysis to Understand the Roles of Gene Diversification in Spatiotemporal Gene Expression and Function
Cited by: 19
Author(s): Venura Herath, Jeanmarie Verchot
Software Mentions: 1
Published: almost 4 years ago
10.3389/fvets.2020.00076
A Novel Thioredoxin-Dependent Peroxiredoxin (TPx-Q) Plays an Important Role in Defense Against Oxidative Stress and Is a Possible Drug Target in Babesia microti
Cited by: 10
Author(s): Houshuang Zhang, Zhonghua Wang, Jingsheng Huang, Jie Cao, Yongzhi Zhou, Jinlin Zhou
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12983-021-00411-2
Influences of submerged plant collapse on diet composition, breadth, and overlap among four crane species at Poyang Lake, China
Cited by: 19
Author(s): Jinjin Hou, Lei Li, Yafang Wang, Wen‐Juan Wang, Huiying Zhan, Dai Nagamatsu, Ping Lu
Software Mentions: 1
Published: over 3 years ago
10.1007/s10142-014-0373-4
Compatible solute, transporter protein, transcription factor, and hormone-related gene expression provides an indicator of drought stress in Paulownia fortunei
Cited by: 27
Author(s): Yanpeng Dong, Guoqiang Fan, Zhao Zhong, Mei Deng
Software Mentions: 1
Published: over 10 years ago
10.1007/s13225-015-0343-8
Extremotolerant fungi from alpine rock lichens and their phylogenetic relationships
Cited by: 65
Author(s): Lucía Muggia, Antonia Fleischhacker, Theodora Kopun, Martín Grube
Software Mentions: 1
Published: over 9 years ago
10.1534/g3.114.010843
Self-Incompatibility in Brassicaceae: Identification and Characterization of <i>SRK</i>-Like Sequences Linked to the <i>S</i>-Locus in the Tribe Biscutelleae
Cited by: 15
Author(s): Jean-Baptiste Leducq, Célia Chantal Gosset, Rita Gries, Kevin Calin, Éric Schmitt, Vincent Castric, Xavier Vekemans
Software Mentions: 1
Published: over 10 years ago
10.1534/g3.118.200900
TSD: A Computational Tool To Study the Complex Structural Variants Using PacBio Targeted Sequencing Data
Cited by: 10
Author(s): Guofeng Meng, Ying Tan, Yue Fan, Yan Wang, Guang Yang, Gregory Fanning, Yang Qiu
Software Mentions: 1
Published: over 5 years ago
10.18632/oncotarget.9611
Long noncoding RNA ZFAS1 promotes gastric cancer cells proliferation by epigenetically repressing KLF2 and NKD2 expression
Cited by: 126
Author(s): Fengqi Nie, Xiang Yu, Ming‐De Huang, Yunfei Wang, Min Xie, Hongwei Ma, Zhaoxia Wang, Wei De, Ming Sun
Software Mentions: 1
Published: over 8 years ago
10.1534/g3.120.401336
The Ancestral <i>Caenorhabditis elegans</i> Cuticle Suppresses <i>rol-1</i>
Cited by: 7
Author(s): Luke M. Noble, Asif Miah, Taniya Kaur, Matthew V. Rockman
Software Mentions: 1
Published: over 4 years ago