pypi: blast | Projects | Ecosyste.ms: Papers

10.1128/genomeA.00778-17

Two Complete Genome Sequences of Squash mosaic virus from 20-Year-Old Cucurbit Leaf Samples from Australia
Cited by: 8
Author(s): Solomon Maina, Owain Edwards, R. A. C. Jones
Software Mentions: 1
Published: about 9 years ago

10.1186/gb-2005-6-13-r113

Cited by: 14
Author(s): Ruth Van Hellemont, Pieter Monsieurs, Gert Thijs, Bart De Moor, Yves Van de Peer, Kathleen Marchal
Software Mentions: 1
Published: over 21 years ago

10.1111/acel.12686

In vivo properties of the disaggregase function of J‐proteins and Hsc70 in Caenorhabditis elegans stress and aging
Cited by: 42
Author(s): Janine Kirstein, Kristin Arnsburg, Annika Scior, Anna Szlachcic, D. Lys Guilbride, Richard I. Morimoto, Bernd Bukau, Nadinath B. Nillegoda
Software Mentions: 1
Published: almost 9 years ago

10.1186/gb-2007-8-3-r36

New genes in the evolution of the neural crest differentiation program
Cited by: 41
Author(s): Juan Ramón Martı́nez-Morales, Thorsten Henrich, Mirana Ramialison, Joachim Wittbrodt
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-10-262

Gene expression profiling of intestinal regeneration in the sea cucumber
Cited by: 92
Author(s): Pablo A. Ortíz-Pineda, Francisco Ramírez-Gómez, Judit M. Pérez Ortiz, Sebastián González-Díaz, Francisco Santiago-De Jesús, Josué Hernández‐Pasos, Cristina Del Valle-Avila, Carmencita Rojas‐Cartagena, Edna C. Suárez-Castillo, Karen Tossas, Ana T. Méndez-Merced, José L. Roig-López, Humberto Ortíz-Zuazaga, José E. García‐Arrarás
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-10-45

An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes.
Cited by: 120
Author(s): David J. Bertioli, Márcio de Carvalho Moretzsohn, Lene Heegaard Madsen, Niels Sandal, Soraya C. M. Leal‐Bertioli, P. M. Guimarães, Birgit Kristine Hougaard, Jakob Fredslund, Leif Schauser, Anna Marie Nielsen, Shusei Sato, Satoshi Tabata, Steven B. Cannon, Jens Stougaard
Software Mentions: 1
Published: over 17 years ago

10.1186/gb-2008-9-10-r152

Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
Cited by: 187
Author(s): Yutaka Satou, Katsuhiko Mineta, Michio Ogasawara, Yasunori Sasakura, Eiichi Shoguchi, Koji Ueno, Lixy Yamada, Jun Matsumoto, Jessica Wasserscheid, Ken Dewar, Graham B. Wiley, Simone Macmil, Bruce A. Roe, Robert W. Zeller, Kenneth E.M. Hastings, Patrick Lemaire, Erika Lindquist, Toshinori Endo, Kohji Hotta, Kazuo Inaba
Software Mentions: 1
Published: over 18 years ago

10.1186/gb-2010-11-7-r71

Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays
Cited by: 54
Author(s): Adnane Sellam, Hervé Hogues, Christopher Askew, Faïza Tebbji, Marco van het Hoog, Hugo Lavoie, Carol A. Kumamoto, Malcolm Whiteway, André Nantel
Software Mentions: 1
Published: over 16 years ago

10.1186/gb-2011-12-11-r116

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine
Cited by: 333
Author(s): Peng Zheng, Yongliang Xia, Guohua Xiao, Chao Xiong, Xiao Hu, Siwei Zhang, Huajun Zheng, Yin Huang, Yan Zhou, Shengyue Wang, Guoping Zhao, Xingzhong Liu, Raymond J. St. Leger, Wang Chengshu
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2164-9-581

Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations
Cited by: 100
Author(s): Gloria Levicán, Juan A. Ugalde, Nicole Ehrenfeld, Alejandro Maass, Pilar Parada
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12864-015-2184-y

Construction of a high-density genetic map and mapping of a sex-linked locus for the brown alga Undaria pinnatifida (Phaeophyceae) based on large scale marker development by specific length amplified fragment (SLAF) sequencing
Cited by: 32
Author(s): Tifeng Shan, Shaojun Pang, Jing Li, Xia Li, Su Li
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-14-328

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics
Cited by: 178
Author(s): Yichun Yang, Stephen A. Smith
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-018-4970-9

Functional insights into the infective larval stage of Anisakis simplex s.s., Anisakis pegreffii and their hybrids based on gene expression patterns
Cited by: 29
Author(s): Carlos Lloréns, Susana C. Arcos, Lee Robertson, Ricardo Ramos, Ricardo Futami, Beatriz Soriano, Sergio Ciordia, Mercedes Careche, Miguel González‐Muñoz, Yolanda Jiménez-Ruíz, Noelia Carballeda-Sangiao, Ignacio Moneo, Juan Pablo Albar, Mark Blaxter, Andrés Navas
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-13-425

Yellow lupin (Lupinus luteus L.) transcriptome sequencing: molecular marker development and comparative studies
Cited by: 67
Author(s): Lorena B Parra-González, Gabriela A Aravena-Abarzúa, Cristell S Navarro-Navarro, Joshua A. Udall, Jeff Maughan, Louis M Peterson, Haroldo Salvo-Garrido, Iván J. Maureira-Butler
Software Mentions: 1
Published: about 14 years ago

10.1186/s12864-016-3468-6

Identification of candidate infection genes from the model entomopathogenic nematode Heterorhabditis bacteriophora
Cited by: 16
Author(s): Jonathan Vadnal, Ramesh Ratnappan, Melissa Keaney, Eric Kenney, Ioannis Eleftherianos, Damien M. O’Halloran, John M. Hawdon
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.00171

Elba, a novel developmentally regulated chromatin boundary factor is a hetero-tripartite DNA binding complex
Cited by: 44
Author(s): Tsutomu Aoki, Ali Sarkeshik, John R. Yates, Paul Schedl
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12863-017-0520-8

Large-scale mitochondrial DNA analysis of native honey bee Apis mellifera populations reveals a new African subgroup private to the South West Indian Ocean islands
Cited by: 25
Author(s): Maéva Angélique Techer, Johanna Clémencet, Christophe Simiand, P. Sookar, Hamza Abdou Azali, Bernard Reynaud, Hélène Delatte
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2156-13-15

A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts
Cited by: 78
Author(s): René Guyomard, Mekki Boussaha, Francine Krieg, Caroline Hervet, Edwige Quillet
Software Mentions: 1
Published: over 14 years ago

10.1186/s12876-021-01911-5

Mutation analysis of the ATP7B gene and genotype–phenotype correlation in Chinese patients with Wilson disease
Cited by: 4
Author(s): Mingming Li, Jing Ma, Wenlong Wang, Xu Yang, Kaizhong Luo
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2148-10-276

An efficient method to find potentially universal population genetic markers, applied to metazoans
Cited by: 37
Author(s): Anne Chenuil, Thierry B. Hoareau, Émilie Egea, Gwilherm Penant, Caroline Rocher, Didier Aurelle, Kenza Mokhtar-Jamaï, John D. D. Bishop, Émilie Boissin, A Mendoza Diaz, Manuela Krakau, Pieternella C. Luttikhuizen, Francesco Paolo Patti, Nicolas Blavet, Sylvain Mousset
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2148-7-177

Evolution of two distinct phylogenetic lineages of the emerging human pathogen Mycobacterium ulcerans
Cited by: 83
Author(s): Michael Käser, Simona Rondini, Naegeli Martin, Timothy P. Stinear, Françoise Portaels, Ulrich Certa, Gerd Pluschke
Software Mentions: 1
Published: over 19 years ago

10.15171/apb.2018.052

Simulation and Stability Assessment of Anti-EpCAM Immunotoxin for Cancer Therapy
Cited by: 3
Author(s): Seyed Ali Hosseinian, Aliakbar Haddad-Mashadrizeh, Samaneh Dolatabadi
Software Mentions: 1
Published: about 8 years ago

10.1186/s12862-015-0441-y

The evolutionary dynamics of tRNA-gene copy number and codon-use in E. coli.
Cited by: 25
Author(s): Michael J. McDonald, Chih‐Hung Chou, Krishna B S Swamy, Hsien Da Huang, Jun‐Yi Leu
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2148-10-24

Signature proteins for the major clades of Cyanobacteria
Cited by: 71
Author(s): Radhey S. Gupta, Divya W Mathews
Software Mentions: 1
Published: over 16 years ago

10.7554/eLife.50292

Micronuclei-based model system reveals functional consequences of chromothripsis in human cells
Cited by: 56
Author(s): Maja Kneissig, Kristina Keuper, Mirjam S. de Pagter, Markus J. van Roosmalen, Jana Martin, Hannah Otto, Verena Passerini, Aline Campos Sparr, Ivo Renkens, Fenna Kropveld, Anand Vasudevan, Jason M. Sheltzer, Wigard P. Kloosterman, Zuzana Storchová
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.18318

Folded gastrulation and T48 drive the evolution of coordinated mesoderm internalization in flies
Cited by: 22
Author(s): Silvia Urbansky, Paula González Avalos, Maike Wosch, Steffen Lemke
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13568-014-0024-0

Characterization of newly isolated oleaginous yeasts - Cryptococcus podzolicus, Trichosporon porosum and Pichia segobiensis
Cited by: 65
Author(s): Ines Schulze, Silla Hansen, Steffen Großhans, Thomas Rudszuck, Katrin Ochsenreither, Christoph Syldatk, Anke Neumann
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2148-10-341

Evolution of xyloglucan-related genes in green plants
Cited by: 66
Author(s): Luiz-Eduardo Del-Bem, Michel Vincentz
Software Mentions: 1
Published: over 16 years ago

10.1016/j.gpb.2018.12.003

Antibiotic Treatment Drives the Diversification of the Human Gut Resistome
Cited by: 51
Author(s): Jun Li, Elizabeth A. Rettedal, Eric van der Helm, Mostafa Mostafa Hashim Ellabaan, Gianni Panagiotou, Morten Otto Alexander Sommer
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms130810154

The Opuntia streptacantha OpsHSP18 Gene Confers Salt and Osmotic Stress Tolerance in Arabidopsis thaliana
Cited by: 11
Author(s): S. Salas-Muñoz, Gracia Goméz‐Anduro, Pablo Delgado‐Sánchez, Margarita Rodríguez‐Kessler, Juan Francisco Jiménez-Bremont
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2148-9-205

Evolutionary dynamics of the LTR retrotransposons roo and rooA inferred from twelve complete Drosophila genomes
Cited by: 17
Author(s): Nicole de la Chaux, Andreas Wagner
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2148-4-24

Cited by: 39
Author(s): Emily E. Hare, Curtis M. Loer
Software Mentions: 1
Published: over 22 years ago

10.1093/gigascience/gix094

Draft genome of the gayal, Bos frontalis
Cited by: 19
Author(s): Mingshan Wang, Yan Zeng, Xiao Wang, Wei Nie, Jinhuan Wang, Wencheng Su, Newton O. Otecko, Zijun Xiong, Sheng Wang, Kaixing Qu, Shouqing Yan, Minmin Yang, Wen Wang, Yang Dong, Dongdong Wu, Yaping Zhang
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2148-8-192

Adaptive evolution of SCML1 in primates, a gene involved in male reproduction
Cited by: 13
Author(s): Haihui Wu, Bing Su
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2148-12-183

Comparative genomics of eukaryotic small nucleolar RNAs reveals deep evolutionary ancestry amidst ongoing intragenomic mobility
Cited by: 32
Author(s): Marc P. Hoeppner, Anthony M. Poole
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2148-7-43

Tic62: a protein family from metabolism to protein translocation
Cited by: 53
Author(s): Mónica Balsera, Anna Stengel, Jürgen Soll, Bettina Bölter
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2148-11-356

Pathogen-origin horizontally transferred genes contribute to the evolution of Lepidopteran insects
Cited by: 38
Author(s): Zi-Wen Li, Yi Hong Shen, Zhong Huai Xiang, Ze Zhang
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12862-015-0286-4

Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae
Cited by: 47
Author(s): Heather M. Hunsperger, Tejinder S. Randhawa, Rose Ann Cattolico
Software Mentions: 1
Published: over 11 years ago

10.1099/mgen.0.000065

Transcriptomic analysis of staphylococcal sRNAs: insights into species-specific adaption and the evolution of pathogenesis
Cited by: 8
Author(s): William H. Broach, Amy L. Weiss, Lindsey N. Shaw
Software Mentions: 1
Published: about 10 years ago

10.1264/jsme2.ME14156

Phylogenetic Diversity of Peltigera Cyanolichens and Their Photobionts in Southern Chile and Antarctica
Cited by: 23
Author(s): Catalina Zúñiga, Diego Leiva, Lía Ramírez-Fernández, Margarita Carú, Rebecca Yahr, Julieta Orlando
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2148-7-150

Thyroid hormone receptor orthologues from invertebrate species with emphasis on Schistosoma mansoni
Cited by: 60
Author(s): Wenjie Wu, Edward G. Niles, Philip T. LoVerde
Software Mentions: 1
Published: about 19 years ago

10.1099/mgen.0.000476

Comprehensive genome analyses of Sellimonas intestinalis, a potential biomarker of homeostasis gut recovery
Cited by: 23
Author(s): Marina Muñoz, Enzo Guerrero-Araya, Catalina Cortés-Tapia, Ángela Plaza-Garrido, Trevor D. Lawley, Daniel Paredes-Sabja
Software Mentions: 1
Published: almost 6 years ago

10.1099/mgen.0.000213

MinION nanopore sequencing identifies the position and structure of bacterial antibiotic resistance determinants in a multidrug-resistant strain of enteroaggregative Escherichia coli
Cited by: 32
Author(s): David R. Greig, Timothy J. Dallman, Katie L. Hopkins, Claire Jenkins
Software Mentions: 1
Published: almost 8 years ago

10.1264/jsme2.ME16179

Predominant but Previously-overlooked Prokaryotic Drivers of Reductive Nitrogen Transformation in Paddy Soils, Revealed by Metatranscriptomics
Cited by: 59
Author(s): Yoko Masuda, Hideomi Itoh, Yutaka Shiratori, Kazuo Isobe, Shigeto Otsuka, Keishi Senoo
Software Mentions: 1
Published: over 9 years ago

10.1186/1475-2859-11-134

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates
Cited by: 140
Author(s): Mari Häkkinen, Mikko Arvas, Merja Oja, Nina Aro, Merja Penttilä, Markku Saloheimo, Tiina Pakula
Software Mentions: 1
Published: over 14 years ago

10.1111/1751-7915.12295

Efflux pump‐deficient mutants as a platform to search for microbes that produce antibiotics
Cited by: 9
Author(s): Carlos Molina-Santiago, Zulema Udaondo, Abdelali Daddaoua, Amalia Roca, Jesús Martín, Ignacio Pérez‐Victoria, Fernando Reyes, Juan L. Ramos
Software Mentions: 1
Published: over 11 years ago

10.1111/1751-7915.12179

Biogas production using anaerobic groundwater containing a subterranean microbial community associated with the accretionary prism
Cited by: 8
Author(s): Kyohei Baito, Satomi Imai, Masayuki Matsushita, Miku Otani, Yu Sato, Hiroyuki Kimura
Software Mentions: 1
Published: almost 12 years ago

10.1099/mgen.0.000353

Origin, maintenance and spread of antibiotic resistance genes within plasmids and chromosomes of bloodstream isolates of Escherichia coli
Cited by: 18
Author(s): Cosmika Goswami, Stephen Fox, Matthew T. G. Holden, Martin Connor, Alistair Leanord, Thomas J. Evans
Software Mentions: 1
Published: over 6 years ago

10.1111/1751-7915.12139

<scp> vanI </scp> : a novel <scp>d</scp> ‐ <scp>A</scp> la‐ <scp>d</scp> ‐ <scp>L</scp> ac vancomycin resistance gene cluster found in <scp>D</scp> esulfitobacterium hafniense 
Cited by: 16
Author(s): Thomas Kruse, Mark Levisson, Willem M. de Vos, Hauke Smidt
Software Mentions: 1
Published: about 12 years ago

10.1099/mgen.0.000191

Genome analysis of methicillin resistance in Macrococcus caseolyticus from dairy cattle in England and Wales
Cited by: 14
Author(s): Alison Macfadyen, Elizabeth Fisher, Ben Costa, C. Fiona Cullen, Gavin K. Paterson
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms14058985

Characteristic of the Pepper CaRGA2 Gene in Defense Responses against Phytophthora capsici Leonian
Cited by: 34
Author(s): Yingli Zhang, Qingli Jia, Dawei Li, Jun-E Wang, Yanxu Yin, Zhen-Hui Gong
Software Mentions: 1
Published: over 13 years ago

10.1111/1751-7915.12285

Recombinant pediocin in <scp>L</scp>actococcus lactis: increased production by propeptide fusion and improved potency by co‐production with <scp>PedC</scp>
Cited by: 10
Author(s): Alexandre Back, Frédéric Borges, Cécile Mangavel, Cédric Paris, Emmanuel Rondags, Romain Kapel, Arnaud Aymes, Hélène Rogniaux, Marija Pavlović, Auke J. van Heel, Oscar P. Kuipers, Anne-Marie Revol-Junelles, Catherine Cailliez‐Grimal
Software Mentions: 1
Published: about 11 years ago

10.1099/mgen.0.000090

Putatively novel serotypes and the potential for reduced vaccine effectiveness: capsular locus diversity revealed among 5405 pneumococcal genomes
Cited by: 29
Author(s): Andries J. van Tonder, James E. Bray, Sigríður Júlía Quirk, Gunnsteinn Haraldsson, Keith A. Jolley, Martin C. J. Maiden, Steen Hoffmann, Stephen D. Bentley, Ásgeir Haraldsson, Helga Erlendsdóttir, Karl G. Kristinsson, Angela B. Brueggemann
Software Mentions: 1
Published: almost 10 years ago

10.1099/mgen.0.000567

Harmonization of whole-genome sequencing for outbreak surveillance of Enterobacteriaceae and Enterococci
Cited by: 7
Author(s): Casper Jamin, Sien De Koster, Stefanie van Kleef-van Koeveringe, Dieter De Coninck, Klaas Mensaert, Katrien De Bruyne, Natascha Perales Selva, Christine Lammens, Herman Goossens, Christian J. P. A. Hoebe, Paul H. M. Savelkoul, Lieke B. van Alphen
Software Mentions: 1
Published: about 5 years ago

10.1099/mgen.0.000296

An in silico survey of Clostridioides difficile extrachromosomal elements
Cited by: 4
Author(s): Bastian Hornung, Ed J. Kuijper, Wiep Klaas Smits
Software Mentions: 1
Published: about 7 years ago

10.5539/gjhs.v8n6p41

Lack of Association Between rs17568 Polymorphism in OX40 Gene and Myocardial Infarction, Southern of Iran
Cited by: 5
Author(s): Mehrnoosh Maalhagh, Mohammad Reza Shojaei, Saiedeh Erfanian, Abdolreza Sotoodeh Jahromi, Mohammad Sadegh Sanie, Ali Reza Yusefi, Hassan Zabetian, Hossein Hakimelahi, Abdoulhossain Madani, Mohammad Hojjat‐Farsangi
Software Mentions: 1
Published: almost 11 years ago

10.1111/1751-7915.13308

Endophytic fungal community of Dysphania ambrosioides from two heavy metal-contaminated sites: evaluated by culture-dependent and culture-independent approaches
Cited by: 18
Author(s): Shobhika Parmar, Qiaohong Li, Ying Wu, Xinya Li, Jinping Yan, Vijay Kumar Sharma, Yunlin Wei, Haiyan Li
Software Mentions: 1
Published: about 8 years ago

10.1099/mgen.0.000228

PhasomeIt: an ‘omics’ approach to cataloguing the potential breadth of phase variation in the genus Campylobacter
Cited by: 16
Author(s): Jack Aidley, Joseph J. Wanford, Luke R. Green, Samuel K. Sheppard, Christopher D. Bayliss
Software Mentions: 1
Published: almost 8 years ago

10.1099/mgen.0.000129

Genomic characterization of a local epidemic Pseudomonas aeruginosa reveals specific features of the widespread clone ST395
Cited by: 17
Author(s): Marie Petitjean, Daniel Martak, Alicia Silvant, Xavier Bertrand, Benoı̂t Valot, Didier Hocquet
Software Mentions: 1
Published: almost 9 years ago

10.1099/mgen.0.000395

Epidemiological and molecular characterization of a novel adenovirus of squirrel monkeys after fatal infection during immunosuppression
Cited by: 1
Author(s): Donna Rogers, Julio C. Ruiz, Wallace B. Baze, Gloria B. McClure, Carolyn L. Smith, Ricky Urbanowski, T. Boston, Joe H. Simmons, Larry E. Williams, Christian R. Abee, John A. Vanchiere
Software Mentions: 1
Published: about 6 years ago

10.1111/1751-7915.12315

Experimental validation of in silico model‐predicted isocitrate dehydrogenase and phosphomannose isomerase from D ehalococcoides mccartyi
Cited by: 1
Author(s): Mahmudul Islam, Anatoli Tchigvintsev, V. Yim, Alexei Savchenko, Alexander F. Yakunin, Radhakrishnan Mahadevan, Elizabeth A. Edwards
Software Mentions: 1
Published: about 11 years ago

10.1111/j.1751-7915.2012.00357.x

Arbuscular mycorrhizal fungi in a wetland constructed for benzene-, methyltert-butyl ether- and ammonia-contaminated groundwater bioremediation
Cited by: 53
Author(s): Thomas Fester
Software Mentions: 1
Published: about 14 years ago

10.1590/0074-02760170182

Dengue serotype-specific immune response in Aedes aegypti and Aedes albopictus
Cited by: 24
Author(s): Chelsea T. Smartt, Dong Ho Shin, Barry W. Alto
Software Mentions: 1
Published: almost 9 years ago

10.3390/medicina55050178

Peptide Mapping, In Silico and In Vivo Analysis of Allergenic Sorghum Profilin Peptides
Cited by: 2
Author(s): Chandra Sekhar Bokka, Ganesh Kumar Veeramachaneni, V B S C Thunuguntla, Janakiram Bobbillapati, Jayakumar Singh Bondili
Software Mentions: 1
Published: over 7 years ago

10.1186/1757-4749-3-9

Molecular basis of virulence in clinical isolates of Escherichia coli and Salmonella species from a tertiary hospital in the Eastern Cape, South Africa
Cited by: 69
Author(s): Mary A. Bisi-Johnson, Larry Chikwelu, Sandeep Vasaikar, Kamaldeen Baba, Toshio Hattori
Software Mentions: 1
Published: over 15 years ago

10.1186/s12862-015-0301-9

The alveolate translation initiation factor 4E family reveals a custom toolkit for translational control in core dinoflagellates
Cited by: 17
Author(s): Grant D Jones, Ernest Williams, Allen R. Place, Rosemary Jagus, Tsvetan R. Bachvaroff
Software Mentions: 1
Published: over 11 years ago

10.3390/ma14061372

Impact of the Diet on the Formation of Oxidative Stress and Inflammation Induced by Bacterial Biofilm in the Oral Cavity
Cited by: 7
Author(s): Ilona Rowińska, Adrianna Szyperska-Ślaska, Piotr Zariczny, Robert Pasławski, Karol Kramkowski, Paweł Kowalczyk
Software Mentions: 1
Published: over 5 years ago

10.3390/md10102280

Assessment of the Bacteriocinogenic Potential of Marine Bacteria Reveals Lichenicidin Production by Seaweed-Derived Bacillus spp.
Cited by: 38
Author(s): Maria Luz Prieto, L. O’Sullivan, Shiau Pin Tan, Peter McLoughlin, Helen Hughes, Paula M. O’Connor, Paul D. Cotter, Peadar G. Lawlor, Gillian E. Gardiner
Software Mentions: 1
Published: almost 14 years ago

10.3390/md13020879

New Insights on the Terpenome of the Red Seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta)
Cited by: 31
Author(s): Louisi Souza de Oliveira, Diogo A. Tschoeke, Aline Lourenço de Oliveira, Lilian Jorge Hill, Wladimir Costa Paradas, Leonardo T. Salgado, Cristiane C. Thompson, Renato Crespo Pereira, Fabiano L. Thompson
Software Mentions: 1
Published: over 11 years ago

10.1186/s13099-017-0177-x

Capsular polysaccharide inhibits adhesion of Bifidobacterium longum 105-A to enterocyte-like Caco-2 cells and phagocytosis by macrophages
Cited by: 22
Author(s): Amin Tahoun, Hisayoshi Masutani, Hanem El-Sharkawy, Trudi Gillespie, Ryo Honda, Kazuo Kuwata, Mizuho Inagaki, Tomio Yabe, Izumi Nomura, Tomohiko Suzuki
Software Mentions: 1
Published: over 9 years ago

10.3390/md16010030

Characterization of a Novel Alginate Lyase from Marine Bacterium Vibrio furnissii H1
Cited by: 28
Author(s): Xiaoyan Zhu, Xiangqian Li, Hao Shi, Jia Zhou, Zhiyong Tan, Mengdi Yuan, Ping Yao, Xiaoyan Liu
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms141020204

OsPOP5, A Prolyl Oligopeptidase Family Gene from Rice Confers Abiotic Stress Tolerance in Escherichia coli
Cited by: 23
Author(s): Cun-Mei Tan, Rongjun Chen, Jianhua Zhang, Xiaoling Gao, Lihua Li, Pingrong Wang, Xiping Deng, Zhengjun Xu
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.heliyon.2021.e06780

Targeted metagenomics using next generation sequencing in laboratory diagnosis of culture negative endophthalmitis
Cited by: 9
Author(s): Deepika Mishra, Gita Satpathy, Rohan Chawla, Daizy Paliwal, Subrat Kumar Panda
Software Mentions: 1
Published: over 5 years ago

10.3390/md18090460

Marine Fungus Aspergillus chevalieri TM2-S6 Extract Protects Skin Fibroblasts from Oxidative Stress
Cited by: 14
Author(s): Sophia Letsiou, Artemis Bakea, Géraldine Le Goff, Philippe Lopes, Κonstantinos Gardikis, Michal Weis, Yehuda Benayahu, Jamal Ouazzani
Software Mentions: 1
Published: about 6 years ago

10.1099/mgen.0.000482

Cryptic prophages within a Streptococcus pyogenes genotype emm4 lineage
Cited by: 7
Author(s): Alex Remmington, Samuel Haywood, Julia Edgar, Luke R. Green, Thushan I. de Silva, Claire E. Turner
Software Mentions: 1
Published: over 5 years ago

10.3390/md18020102

A Truncated Galectin-3 Isolated from Skin Mucus of Atlantic Salmon Salmo salar Binds to and Modulates the Proteome of the Gram-Negative Bacteria Moritella viscosa
Cited by: 9
Author(s): Deepti Manjari Patel, Yoichiro Kitani, Kjetil Korsnes, Martin Haugmo Iversen, Monica F. Brinchmann
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2148-8-110

The genome of the brown alga Ectocarpus siliculosus contains a series of viral DNA pieces, suggesting an ancient association with large dsDNA viruses
Cited by: 44
Author(s): Nicolas Delaroque, Wilhelm Boland
Software Mentions: 1
Published: over 18 years ago

10.3390/md17050275

Widespread Existence of Quorum Sensing Inhibitors in Marine Bacteria: Potential Drugs to Combat Pathogens with Novel Strategies
Cited by: 27
Author(s): Jingjing Zhao, Xinyun Li, Xiyan Hou, Chunshan Quan, Ming Chen
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.7341

Rapid generation of novel models of RAG1 deficiency by CRISPR/Cas9-induced mutagenesis in murine zygotes
Cited by: 11
Author(s): Lisa Ott de Bruin, Wei Yang, Kelly Capuder, Yu Nee Lee, Maddalena Antolini, Robin M. Meyers, Martin Gellert, Kiran Musunuru, John P. Manis, Luigi D. Notarangelo
Software Mentions: 1
Published: over 10 years ago

10.1099/mgen.0.000202

Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association
Cited by: 17
Author(s): Scott V. Nguyen, Dayna M. Harhay, James L. Bono, Timothy P. L. Smith, Patricia I. Fields, Blake A. Dinsmore, Monica Santovenia, Rong Wang, Joseph M. Bosilevac, Gregory P. Harhay
Software Mentions: 1
Published: about 8 years ago

10.1007/s10126-021-10042-7

Development and Interrogation of a Transcriptomic Resource for the Giant Triton Snail (Charonia tritonis)
Cited by: 6
Author(s): Anne Klein, Cherie A. Motti, Adam K. Hillberg, Tomer Ventura, Peter Thomas‐Hall, Thomas R. Armstrong, Thomas H. Barker, Paul Whatmore, Scott F. Cummins
Software Mentions: 1
Published: over 5 years ago

10.1186/1475-2875-8-69

A systematic classification of Plasmodium falciparum P-loop NTPases: structural and functional correlation
Cited by: 12
Author(s): Deepti Gangwar, Mridul Kalita, Dinesh Gupta, Virander S. Chauhan, Asif Mohmmed
Software Mentions: 1
Published: over 17 years ago

10.1099/mgen.0.000053

PhagePhisher: a pipeline for the discovery of covert viral sequences in complex genomic datasets
Cited by: 7
Author(s): Thomas Hatzopoulos, Siobhan C. Watkins, Catherine Putonti
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms161226219

The Complete Mitochondrial Genome of Mindarus keteleerifoliae (Insecta: Hemiptera: Aphididae) and Comparison with Other Aphididae Insects
Cited by: 10
Author(s): Yuan Wang, Jing Chen, Li‐Yun Jiang, Ge‐Xia Qiao
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2148-4-36

Cited by: 235
Author(s): Jibin Sun, Rolf Daniel, Irene Wagner‐Döbler, An‐Ping Zeng
Software Mentions: 1
Published: over 22 years ago

10.1099/mgen.0.000233

The resistomes of six carbapenem-resistant pathogens – a critical genotype–phenotype analysis
Cited by: 16
Author(s): Anna Johnning, Nahid Karami, Erika Tång Hallbäck, Vilhelm Müller, Lena Nyberg, Mariana Buongermino Pereira, Callum Stewart, Tobias Ambjörnsson, Fredrik Westerlund, Ingegerd Adlerberth, Erik Kristiansson
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41438-021-00539-6

The chromosome-level Hemerocallis citrina Borani genome provides new insights into the rutin biosynthesis and the lack of colchicine
Cited by: 21
Author(s): Zhixing Qing, Jinghong Liu, Xiao Su Yi, Xiubin Liu, Guoqing Hu, Jia Lao, Wei He, Zihui Yang, Xiaoyan Zou, Mengshan Sun, Peng Huang, Jianguo Zeng
Software Mentions: 1
Published: over 5 years ago

10.1186/s12936-018-2316-3

Presence of novel triple mutations in the pvdhfr from Plasmodium vivax in Mangaluru city area in the southwestern coastal region of India
Cited by: 9
Author(s): Shiny Joy, Susanta Kumar Ghosh, Rajeshwara N. Achur, D. Channe Gowda, Namita Surolia
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms17060825

Cloning, Expression and 3D Structure Prediction of Chitinase from Chitinolyticbacter meiyuanensis SYBC-H1
Cited by: 9
Author(s): Zhikui Hao, Heng Wu, Meiling Yang, Jianjun Chen, Limin Xi, Weijie Zhao, Jialin Yu, Jiayang Liu, Xiangru Liao, Qingguo Huang
Software Mentions: 1
Published: over 10 years ago

10.1099/mgen.0.000274

Putative novel cps loci in a large global collection of pneumococci
Cited by: 10
Author(s): Andries J. van Tonder, Rebecca A. Gladstone, Stephanie Lo, Moon H. Nahm, Mignon du Plessis, Jennifer Cornick, Brenda Kwambana-Adams, Shabir A. Madhi, Paulina A. Hawkins, Rachel Benisty, Ron Dagan, Dean Everett, Martín Antonio, Keith P. Klugman, Anne von Gottberg, Robert F. Breiman, Lesley McGee, Stephen D. Bentley
Software Mentions: 1
Published: about 7 years ago

10.1111/irv.12185

Genetic variability of human metapneumo- and bocaviruses in children with respiratory tract infections
Cited by: 10
Author(s): Vasiliki Pogka, Afroditi Moutousi, Athanasios Kossyvakis, Antonios Kalliaropoulos, Dionyssios N. Sgouras, Maria Giannaki, Αndreas Mentis
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2148-8-44

Slipins: ancient origin, duplication and diversification of the stomatin protein family
Cited by: 39
Author(s): Jasper B. Green, J. Peter W. Young
Software Mentions: 1
Published: over 18 years ago

10.1186/s12936-018-2188-6

Drug resistance genes: pvcrt-o and pvmdr-1 polymorphism in patients from malaria endemic South Western Coastal Region of India
Cited by: 17
Author(s): Shiny Joy, Benudhar Mukhi, Susanta Kumar Ghosh, Rajeshwara N. Achur, D. Channe Gowda, Namita Surolia
Software Mentions: 1
Published: over 8 years ago

10.1186/s12936-017-1976-8

A new method for sequencing the hypervariable Plasmodium falciparum gene var2csa from clinical samples
Cited by: 13
Author(s): Antoine Dara, Mark A. Travassos, Matthew Adams, Sarah Schaffer DeRoo, Elliott F. Drábek, Sonia Agrawal, Miriam K. Laufer, Christopher V. Plowe, Joana C. Silva
Software Mentions: 1
Published: about 9 years ago

10.1099/mgen.0.000609

Phylogenomic disentangling of the Bifidobacterium longum subsp. infantis taxon
Cited by: 9
Author(s): Chiara Tarracchini, Christian Milani, Gabriele Andrea Lugli, Leonardo Mancabelli, Federico Fontana, Giulia Alessandri, Giulia Longhi, Rosaria Anzalone, Alice Viappiani, Francesca Turroni, Douwe van Sinderen, Marco Ventura
Software Mentions: 1
Published: about 5 years ago

10.1099/mgen.0.000564

Genomics reveals the novel species placement of industrial contaminant isolates incorrectly identified as Burkholderia lata
Cited by: 2
Author(s): Edward Cunningham-Oakes, Tom Pointon, Barry Murphy, Stuart Campbell-Lee, Gordon Webster, Thomas R. Connor, Eshwar Mahenthiralingam
Software Mentions: 1
Published: over 5 years ago

10.3390/insects11100680

Tracking the Distribution and Burst of Nuclear Mitochondrial DNA Sequences (NUMTs) in Fig Wasp Genomes
Cited by: 10
Author(s): Jianxia Wang, Jing Liu, Yun-Heng Miao, Dawei Huang, Jin‐Hua Xiao
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.7762

A new immunization and treatment strategy for mouse mammary tumor virus (MMTV) associated cancers
Cited by: 16
Author(s): Ori Braitbard, Maayan Roniger, Allan Bar-Sinai, Dana Rajchman, Tamar Gross, Hillel Abramovitch, Marco La Ferla, Sara Franceschi, Francesca Lessi, Antonio Giuseppe Naccarato, Chiara Maria Mazzanti, Generoso Bevilacqua, Jacob Hochman
Software Mentions: 1
Published: over 10 years ago

10.1099/mgen.0.000143

Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26
Cited by: 51
Author(s): Cameron J. Reid, Ethan R. Wyrsch, Piklu Roy Chowdhury, Tiziana Zingali, Mengmeng Liu, Aaron E. Darling, Toni A. Chapman, Steven P. Djordjevic
Software Mentions: 1
Published: almost 9 years ago

10.3390/life5010905

The Expansion of Animal MicroRNA Families Revisited
Cited by: 40
Author(s): Jana Hertel, Peter F. Stadler
Software Mentions: 1
Published: over 11 years ago

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