pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/s12864-016-2915-8

Target-site and non-target-site based resistance to the herbicide tribenuron-methyl in flixweed (Descurainia sophia L.)
Cited by: 67
Author(s): Qian Yang, Wei Deng, Xuefeng Li, Qin Yu, Lianyang Bai, Mingqi Zheng
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-9-238

Simultaneous gene expression profiling in human macrophages infected with Leishmania major parasites using SAGE
Cited by: 53
Author(s): Fatma Z. Guerfali, Dhafer Laouini, Lamia Guizani-Tabbane, Florence Ottonès, Khadija Ben-Aissa, Alia Benkahla, Laurent Manchon, David Piquemal, Sondos Smandi, Ons Mghirbi, Thérèse Commes, Jacques Marti, Koussay Dellagi
Software Mentions: 1
Published: over 18 years ago

10.1186/s12864-016-2709-z

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database
Cited by: 260
Author(s): Jérémy Pasquier, Cédric Cabau, Thuy Thao Vi Nguyen, Elodie Jouanno, Dany Séverac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-8-86

Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis
Cited by: 68
Author(s): Beile Gao, Radhey S. Gupta
Software Mentions: 1
Published: almost 20 years ago

10.1186/s12864-019-6365-y

Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination
Cited by: 20
Author(s): Shanshan Dong, Chaoxian Zhao, Shouzhou Zhang, Li Zhang, Hong Wu, Sunil Kumar Sahu, Rui‐Liang Zhu, Yu Jia, Bernard Goffinet, Yang Liu
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-15-220

Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process
Cited by: 83
Author(s): Aurélien Brionne, Yves Nys, Christelle Hennequet-Antier, Joël Gautron
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-017-3952-7

The adaptive landscape of wildtype and glycosylation-deficient populations of the industrial yeast Pichia pastoris
Cited by: 9
Author(s): Josef W. Moser, Iain B. H. Wilson, Martin Dragosits
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-017-4210-8

Diatom flagellar genes and their expression during sexual reproduction in Leptocylindrus danicus
Cited by: 12
Author(s): Deepak Nanjappa, Remo Sanges, Maria Immacolata Ferrante, Adriana Zingone
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-019-5721-2

Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea
Cited by: 19
Author(s): Zengxiang Wu, Kaining Hu, Mei Yan, Liping Song, Jing Wen, Chaozhi Ma, Jinxiong Shen, FU Ting-dong, Jinxing Tu
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-13-135

A Gaijin-like miniature inverted repeat transposable element is mobilized in rice during cell differentiation
Cited by: 19
Author(s): Hua Dong, Lu Zhang, Zheng Kangle, Haigen Yao, Jack Chen, Feng-Chi Yu, Xiaoxing Yu, Bizeng Mao, Dong Zhang, Jian Yao, Debao Li
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-14-551

Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range
Cited by: 71
Author(s): Neha Jalan, Dibyendu Kumar, Maxuel O. Andrade, Fahong Yu, Jeffrey B. Jones, James H. Graham, Frank F. White, João Carlos Setúbal, Nian Wang
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-12-S2-S6

CAMBer: an approach to support comparative analysis of multiple bacterial strains
Cited by: 19
Author(s): Michał Woźniak, Limsoon Wong, Jerzy Tiuryn
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-015-2185-x

Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon
Cited by: 25
Author(s): Joëlle Amselem, Marielle Vigouroux, Simone Oberhaensli, J. K. M. Brown, Laurence V. Bindschedler, Pari Skamnioti, Thomas Wicker, Pietro D. Spanu, Hadi Quesneville, Soledad Sacristán
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-8-434

The TriTryp Phosphatome: analysis of the protein phosphatase catalytic domains
Cited by: 90
Author(s): Rachel Brenchley, Humera Tariq, Helen McElhinney, Balázs Szöőr, Julie Huxley-Jones, Robert Stevens, Keith R. Matthews, Lydia Tabernero
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2164-13-122

Identification of microRNAs from Amur grape (vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics
Cited by: 87
Author(s): Chen Wang, Han jinsoo, Chonghuai Liu, Korir Nicholas Kibet, Emrul Kayesh, Lingfei Shangguan, Xiaoying Li, Jinggui Fang
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-13-303

Oomycete transcriptomics database: A resource for oomycete transcriptomes
Cited by: 8
Author(s): Sucheta Tripathy, Tejal Deo, Brett M. Tyler
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12864-016-2927-4

Orthologs, turn-over, and remolding of tRNAs in primates and fruit flies
Cited by: 17
Author(s): Cristian A. Velandia-Huerto, Sarah J. Berkemer, Anne Hoffmann, Nancy Retzlaff, Liliana C. Romero Marroquín, Maribel Hernández-Rosales, Peter F. Stadler, Clara Isabel Bermúdez-Santana
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-14-389

Skin transcriptome profiles associated with coat color in sheep
Cited by: 64
Author(s): Rong Fan, Jun Xie, Junming Bai, Haidong Wang, Tian Xue, Rui Bai, Xiaoyun Jia, Lei Yang, Yunfei Song, Muren Herrid, Wenjun Gao, Xu He, Jianbo Yao, George W. Smith, Changsheng Dong
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-019-5937-1

Genome-wide characterization of SPL family in Medicago truncatula reveals the novel roles of miR156/SPL module in spiky pod development
Cited by: 17
Author(s): Hongfeng Wang, Zhichao Lu, Yiteng Xu, Lingcui Kong, Jiankui Shi, Yafei Liu, Chunxiang Fu, Xiaoshan Wang, Zeng‐Yu Wang, Chuanen Zhou, Li Han
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-11-335

Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8
Cited by: 59
Author(s): Max Farnbacher, Thomas Jahns, Dirk Willrodt, Rolf Daniel, Rainer Haas, Alexander Goesmann, Stefan Kurtz, Gabriele Rieder
Software Mentions: 1
Published: over 16 years ago

10.1186/s12864-021-07551-z

RNA-Seq analysis of blood meal induced gene-expression changes in Aedes aegypti ovaries
Cited by: 7
Author(s): Dilip K. Nag, Constentin Dieme, Pascal Lapierre, Erica Lasek‐Nesselquist, Laura D. Kramer
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-5232-6

Transcriptomic time-series analysis of early development in olive from germinated embryos to juvenile tree
Cited by: 9
Author(s): Jaime Jiménez-Ruiz, María de la O Leyva-Pérez, Isabel Vidoy-Mercado, Araceli Barceló, Francisco Luque
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-13-331

Genomic and proteomic characterization of SuMu, a Mu-like bacteriophage infecting Haemophilus parasuis
Cited by: 18
Author(s): Emilie S. Zehr, Louisa B. Tabatabai, Darrell O. Bayles
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-12-88

The mining of toxin-like polypeptides from EST database by single residue distribution analysis
Cited by: 35
Author(s): Sergey A. Kozlov, Eugene V. Grishin
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-021-07908-4

Mapping of quantitative trait loci underlying a magic trait in ongoing ecological speciation
Cited by: 3
Author(s): Tetsumi Takahashi, Atsushi J. Nagano, Teiji Sota
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-021-07490-9

Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca
Cited by: 50
Author(s): Yan Cheng, Xiaoxue He, S. V. G. N. Priyadarshani, Yu Wang, Ye Li, Chao Shi, Kangzhuo Ye, Qiao Zhou, Zhihua Luo, Fang Deng, Ling Cao, Ping Zheng, Mohammad Aslam, Yuan Qin
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3064-9

Combined genomic and structural analyses of a cultured magnetotactic bacterium reveals its niche adaptation to a dynamic environment
Cited by: 17
Author(s): Ana Carolina Vieira Araújo, Viviana Morillo, Jefferson Cypriano, Lia Cardoso Rocha Saraiva Teixeira, Pedro Leão, Sidcley Lyra, Luiz Gonzaga Paula de Almeida, Dennis A. Bazylinski, Ana Tereza Ribeiro de Vasconcellos, Fernanda Abreu, Ulysses Lins
Software Mentions: 1
Published: about 10 years ago

10.1186/s12864-019-5547-y

De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats
Cited by: 18
Author(s): Zehai Hou, Cong Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-14-S7-S2

Filtering of MS/MS data for peptide identification
Cited by: 2
Author(s): Jason Gallia, Katelyn S. Lavrich, Anna L. Tan-Wilson, Patrick H. Madden
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-10-518

Discovery of novel human transcript variants by analysis of intronic single-block EST with polyadenylation site
Cited by: 10
Author(s): Pingzhang Wang, Peng Yu, Peng Gao, Taiping Shi, Dalong Ma
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2164-7-174

Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs
Cited by: 67
Author(s): Nathalie Pavy, Lee S. Parsons, Charles Paule, John Mackay, Jean Bousquet
Software Mentions: 1
Published: over 20 years ago

10.1186/s12864-016-3365-z

Genome-wide identification, phylogeny, and expression analysis of pectin methylesterases reveal their major role in cotton fiber development
Cited by: 39
Author(s): Weijie Li, Hǎihóng Shāng, Qún Gě, Changsong Zou, Juan Cai, Daojie Wang, Senmiao Fan, Zhen Zhang, Xiǎoyīng Dèng, Yunna Tan, Weiwu Song, Pengtao Li, Palanga Kibalou Koffi, Muhammad Jamshed, Quánwěi Lú, Wànkuí Gǒng, Jùnwén Lǐ, Yùzhēn Shí, Tingting Chen, Jǔwǔ Gōng, Àiyīng Liú, Yǒulù Yuán
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2164-15-679

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine
Cited by: 231
Author(s): Guillaume Borrel, Nicolas Parisot, Hugh M. B. Harris, Éric Peyretaillade, Nadia Gaci, William Tottey, Olivier Bardot, Kasie Raymann, Simonetta Gribaldo, Pierre Peyret, Paul W. O’Toole, Jean-François Brugère
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-13-88

Genomic variation in Salmonella enterica core genes for epidemiological typing
Cited by: 71
Author(s): Pimlapas Leekitcharoenphon, Oksana Lukjancenko, Carsten Friis, Frank Møller Aarestrup, David W. Ussery
Software Mentions: 1
Published: over 14 years ago

10.1186/s12864-016-3244-7

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma
Cited by: 31
Author(s): Nicolás Bellora, Martín Moliné, Márcia David-Palma, Marco A. Coelho, Chris Todd Hittinger, José Paulo Sampaio, Paula Gonçalves, Diego Libkind
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-12-548

Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism
Cited by: 21
Author(s): Laurence Liaubet, Valérie Lobjois, Thomas Faraut, Aurélie Tircazes, Francis Benne, Nathalie Iannuccelli, José Luís Pires, Jérôme Glénisson, Annie Robic, Pascale Le Roy, Magali SanCristobal, Pierre Chérel
Software Mentions: 1
Published: about 15 years ago

10.1186/s12864-019-5945-1

Integrated transcriptome, small RNA, and degradome analysis reveals the complex network regulating starch biosynthesis in maize
Cited by: 14
Author(s): Xiaocong Zhang, Sidi Xie, Jienan Han, Yu Zhou, Chang Liu, Zhiqiang Zhou, Feifei Wang, Zixiang Cheng, Junjie Zhang, Yu‐Feng Hu, Hao Zhang, Mingshun Li, Degui Zhang, Hongjun Yong, Yubi Huang, Jianfeng Weng, Xinhai Li
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-11-249

Small RNA expression and strain specificity in the rat
Cited by: 71
Author(s): Sam E.V. Linsen, Elzo de Wit, Ewart de Bruijn, Edwin Cuppen
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-10-24

The G protein-coupled receptor subset of the dog genome is more similar to that in humans than rodents
Cited by: 48
Author(s): Tatjana Haitina, Robert Fredriksson, Steven M. Foord, Helgi B. Schiöth, David E. Gloriam
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12864-019-5501-z

Transcriptomic profiling of the flower scent biosynthesis pathway of Cymbidium faberi Rolfe and functional characterization of its jasmonic acid carboxyl methyltransferase gene
Cited by: 21
Author(s): Qi Xu, Songtai Wang, Hao Hong, Yin Zhou
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-017-3727-1

Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: towards a better understanding of the functions of multiple duplicates
Cited by: 17
Author(s): Lucie Marandel, Stéphane Panserat, Élisabeth Plagnes-Juan, Eva Arbenoits, José L. Soengas, Julien Bobe
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-016-2934-5

Automated detection of ncRNAs in the draft genome sequence of a colonial tunicate: the carpet sea squirt Didemnum vexillum
Cited by: 10
Author(s): Cristian A. Velandia-Huerto, Adriaan Gittenberger, Federico D. Brown, Peter F. Stadler, Clara Isabel Bermúdez-Santana
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-9-127

Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif
Cited by: 43
Author(s): Thomas R. Bürglin
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2164-14-534

Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae
Cited by: 52
Author(s): Li Wei, Xin Yi, Dongmei Wang, Xiaoyan Jing, Qian Zhou, Xiaoquan Su, Jun Jia, Kang Ning, Feng Chen, Qiang Hu, Jian Xu
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-015-2128-6

Identification of alternative splicing events by RNA sequencing in early growth tomato fruits
Cited by: 43
Author(s): Yuan Sun, Xianpei Han
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-021-07673-4

Transcriptome analysis provides insights into copper toxicology in piebald naked carp (Gymnocypris eckloni)
Cited by: 3
Author(s): Wenjie Jin, Zixuan Li, Fengxia Ran, Shuxian Huang, Kefan Huo, Jianjuan Li, Qingshuo Han, Guojie Wang, Zhen-Ji Wang, Shenlong Jian, Kemao Li, Changzhong Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-5758-2

Comparative transcriptome analyses of genes involved in sulforaphane metabolism at different treatment in Chinese kale using full-length transcriptome sequencing
Cited by: 20
Author(s): Qiuyun Wu, Junwei Wang, Shuxiang Mao, Hongyan Xu, Qi Wu, Mantian Liang, Yǒulù Yuán, Mingyue Liu, Ke Huang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-018-4676-z

Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees
Cited by: 11
Author(s): Marie Saitou, Yoko Satta, Ömer Gökçümen, Takafumi Ishida
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-020-06851-0

Transcriptome profiling of venom gland from wasp species: de novo assembly, functional annotation, and discovery of molecular markers
Cited by: 4
Author(s): Junjie Tan, Wenbo Wang, Fan Wu, Yunming Li, Qing Fan
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-11-390

Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate
Cited by: 23
Author(s): Wiesław Babik, Michał Stuglik, Weihong Qi, Marzanna Kuenzli, Katarzyna Kuduk, Paweł Koteja, Jacek Radwan
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2164-11-522

An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6
Cited by: 53
Author(s): Jeffrey A. Kimbrel, Scott A. Givan, Anne Halgren, Allison Creason, Dallice Mills, Gary M. Banowetz, Donald J. Armstrong, Jeff H. Chang
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2164-8-173

Patterned sequence in the transcriptome of vascular plants
Cited by: 4
Author(s): Charles F. Crane
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2164-8-174

Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus
Cited by: 322
Author(s): Linda A. Raubeson, Rhiannon Peery, Timothy W. Chumley, Chris Dziubek, H. Matthew Fourcade, Jeffrey L. Boore, Robert K. Jansen
Software Mentions: 1
Published: almost 20 years ago

10.1186/s12864-016-2418-7

Impact of selenium supplementation on fish antiviral responses: a whole transcriptomic analysis in rainbow trout (Oncorhynchus mykiss) fed supranutritional levels of Sel-Plex®
Cited by: 65
Author(s): Davide Pacitti, Muhammad M. Lawan, Jörg Feldmann, John Sweetman, Tiehui Wang, Samuel Martín
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-10-134

A robust linkage map of the porcine autosomes based on gene-associated SNPs
Cited by: 27
Author(s): R. K. K. Vingborg, Vivi Raundahl Gregersen, Bin Zhan, Frank Panitz, Anette Høj, Kirsten Kørup Sørensen, Lone Bruhn Madsen, Knud Larsen, Henrik Hornshøj, Xuefei Wang, Christian Berthou
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-7-105

Direct and heterologous approaches to identify the LET-756/FGF interactome
Cited by: 10
Author(s): Cornel Popovici, Yael Berda, Fabien Conchonaud, Aurélie Harbis, Daniel Birnbaum, Régine Roubin
Software Mentions: 1
Published: over 20 years ago

10.1186/s12864-020-6700-3

Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs
Cited by: 7
Author(s): Matteo Bianchi, Nima Rafati, Åsa Karlsson, Eva Murén, Carl-Johan Rubin, Katarina Sundberg, Gerhard Andersson, Olle Kämpe, Åke Hedhammar, Kerstin Lindblad‐Toh, Gerli Pielberg
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-015-1447-y

Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation
Cited by: 23
Author(s): Adrian Czaban, Sapna Sharma, Stephen Byrne, Manuel Spannagl, Klaus Mayer, Torben Asp
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-9-412

The protein-phosphatome of the human malaria parasite Plasmodium falciparum
Cited by: 69
Author(s): Jonathan M. Wilkes, Christian Doerig
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2164-13-384

sRNAdb: A small non-coding RNA database for gram-positive bacteria
Cited by: 16
Author(s): Jordan Pischimarov, Carsten Kuenne, André Billion, Jürgen Hemberger, Franz Cemič, Trinad Chakraborty, Torsten Hain
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-14-901

The drug:H+ antiporters of family 2 (DHA2), siderophore transporters (ARN) and glutathione:H+ antiporters (GEX) have a common evolutionary origin in hemiascomycete yeasts
Cited by: 24
Author(s): Paulo Jorge Varela Lopes Dias, Isabel Sá‐Correia
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-11-460

A proteogenomic update to Yersinia: enhancing genome annotation
Cited by: 50
Author(s): Samuel H. Payne, Shih Ting Huang, Rembert Pieper
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-13-474

RNA-Seq reveals complex genetic response to deepwater horizon oil release in Fundulus grandis
Cited by: 71
Author(s): Tzintzuni Garcia, Yingjia Shen, Douglas L. Crawford, Marjorie F. Oleksiak, Andrew Whitehead, Ronald B. Walter
Software Mentions: 1
Published: about 14 years ago

10.1186/s12864-015-1653-7

Transcriptome profiling provides new insights into the formation of floral scent in Hedychium coronarium
Cited by: 65
Author(s): Yuechong Yue, Rangcai Yu, Yanting Fan
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-15-1035

High opsin diversity in a non-visual infaunal brittle star
Cited by: 29
Author(s): Jérôme Delroisse, Esther Ullrich-Lüter, Olga Ortega-Martínez, Sam Dupont, Maria Ina Arnone, Jérôme Mallefet, Patrick Flammang
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-019-5565-9

Identification of genetic relationships and subspecies signatures in Xylella fastidiosa
Cited by: 50
Author(s): Nicolás Denancé, Martial Briand, Romain Gaborieau, Sylvain Gaillard, Marie‐Agnès Jacques
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-020-06998-w

Circular DNA intermediates in the generation of large human segmental duplications
Cited by: 3
Author(s): Javier U. Chicote, Marcos López-Sánchez, Tomàs Marquès-Bonet, José Ramón Ara Callizo, Luis A. Pérez‐Jurado, Antonio García‐España
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-020-6488-1

The draft genome of horseshoe crab Tachypleus tridentatus reveals its evolutionary scenario and well-developed innate immunity
Cited by: 20
Author(s): Yan Zhou, Yuan Liang, Qing Yan, Liang Zhang, Dianbao Chen, Lingwei Ruan, Yuan Kong, Hong Shi, Mingliang Chen, Jianming Chen
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-14-727

Identifying the candidate genes involved in the calyx abscission process of 'Kuerlexiangli’ (Pyrus sinkiangensis Yu) by digital transcript abundance measurements
Cited by: 28
Author(s): Xiaoxiao Qi, Jun Wu, Lifen Wang, Leiting Li, Yufen Cao, Lili Tian, Xingguang Dong, Shaoling Zhang
Software Mentions: 1
Published: about 13 years ago

10.1186/s12864-014-1196-3

Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly
Cited by: 48
Author(s): Jason Argyris, Aurora Ruiz‐Herrera, Pablo Madriz-Masis, Walter Sanseverino, Jordi Morata, Marta Pujol, Sebastián E. Ramos-Onsins, Jordi García-Más
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-9-36

Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea
Cited by: 39
Author(s): Fengfeng Zhou, Victor Olman, Ying Xu
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2172-10-22

Bos taurus genome sequence reveals the assortment of immunoglobulin and surrogate light chain genes in domestic cattle
Cited by: 30
Author(s): Anna Ekman, Mikael Niku, Jenni Liljavirta, Antti Iivanainen
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2172-9-62

Genomic organization and phylogenetic utility of deer mouse (Peromyscus maniculatus) lymphotoxin-alpha and lymphotoxin-beta
Cited by: 0
Author(s): Tiffany R. Richens, Aparna D.-N. Palmer, Joseph Prescott, Tony Schountz
Software Mentions: 1
Published: about 18 years ago

10.1186/s12879-019-4163-4

The inference of HIV-1 transmission direction between HIV-1 positive couples based on the sequences of HIV-1 quasi-species
Cited by: 7
Author(s): Jianjun Wu, HU Zhong-wang, Hui Yao, Hai Wang, Lei Yan, Ping Zhong, Yi Feng, Hui Xing, Yuelan Shen, Juan Lin, Aiwen Liu, Yizu Qin, Lifeng Miao, Bin Su, Hongjie Zhang, Haijian Guo
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2334-14-22

Unexplained diarrhoea in HIV-1 infected individuals
Cited by: 51
Author(s): Bas B. Oude Munnink, Marta Canuti, Martin Deijs, Michèl de Vries, Maarten F. Jebbink, Sjoerd Rebers, Richard Molenkamp, Formijn J. van Hemert, Kyungsoon Chung, Matthew Cotten, F. Snijders, C. J. A. Sol, Lia van der Hoek
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12879-016-1335-3

Streptococcus pneumoniae colonisation in children and adolescents with asthma: impact of the heptavalent pneumococcal conjugate vaccine and evaluation of potential effect of thirteen-valent pneumococcal conjugate vaccine
Cited by: 19
Author(s): Susanna Esposito, Leonardo Terranova, Maria Francesca Patria, Gian Luigi Marseglia, Michele Miraglia Del Giudice, Alessandro Bodini, Alberto M. Martelli, Eugenio Baraldi, Oscar Mazzina, Claudia Tagliabue, Valentina Ierardi, Mara Lelii, Nicola Principi
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12866-018-1376-4

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France
Cited by: 6
Author(s): Guillaume Geslain, André Birgy, Sandrine Adiba, Mélanie Magnan, Céline Courroux, Corinne Lévy, Robert Cohen, Philippe Bidet, Stéphane Bonacorsi
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12866-014-0203-9

Complete nucleotide sequence of pRS218, a large virulence plasmid, that augments pathogenic potential of meningitis-associated Escherichia coli strain RS218
Cited by: 34
Author(s): Dona Saumya S. Wijetunge, Kurundu Hewage Eranda M Karunathilake, Atul A. Chaudhari, Robab Katani, Edward G. Dudley, Vivek Kapur, Chitrita DebRoy, Subhashinie Kariyawasam
Software Mentions: 1
Published: about 12 years ago

10.1186/s12866-020-01940-2

The aceE involves in mycolic acid synthesis and biofilm formation in Mycobacterium smegmatis
Cited by: 6
Author(s): Suting Chen, Tianlu Teng, Shuan Wen, Tingting Zhang, Hairong Huang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-016-0896-z

Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome
Cited by: 48
Author(s): Desirée Baumgartner, Matthias Kopf, Stephan Klähn, Claudia Steglich, Wolfgang R. Hess
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2180-13-152

Isolation and characterization of diverse antimicrobial lipopeptides produced by Citrobacter and Enterobacter
Cited by: 69
Author(s): Santi M. Mandal, Shalley Sharma, Anil Kumar Pinnaka, Anita Kumari, Suresh Korpole
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2180-9-162

Differential proteomic analysis of Clostridium perfringens ATCC13124; identification of dominant, surface and structure associated proteins
Cited by: 34
Author(s): Syed Imteyaz Alam, Sunita Bansod, Rohit Kumar, Nabonita Sengupta, Lokendra Singh
Software Mentions: 1
Published: over 17 years ago

10.1186/s12866-020-01814-7

New perspectives on butyrate assimilation in Rhodospirillum rubrum S1H under photoheterotrophic conditions
Cited by: 13
Author(s): Quentin De Meur, Adam M. Deutschbauer, Matthias Koch, Guillaume Bayon-Vicente, Paloma Cabecas Segura, Ruddy Wattiez, Baptiste Leroy
Software Mentions: 1
Published: over 6 years ago

10.1186/s12866-021-02107-3

Identification and functional analysis of the SARS-COV-2 nucleocapsid protein
Cited by: 46
Author(s): Tianyi Gao, Yingdong Gao, Xiangxiang Liu, Zhenlin Nie, Hanqing Sun, Kang Lin, Hong-Xin Peng, Shukui Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-018-1288-3

Bacterial diversity obtained by culturable approaches in the gut of Glossina pallidipes population from a non sleeping sickness focus in Tanzania: preliminary results
Cited by: 19
Author(s): Imna Malele, Hamis Nyingilili, Eugene A. Lyaruu, Marc Tauzin, Bernard Ollivier, Jean‐Luc Cayol, Marie‐Laure Fardeau, Anne Geiger
Software Mentions: 1
Published: about 8 years ago

10.1186/s12866-015-0573-7

Microbial inoculants for the biocontrol of Fusarium spp. in durum wheat
Cited by: 58
Author(s): Loredana Baffoni, Francesca Gaggìa, Nereida Dalanaj, Antonio Prodi, Paola Nipoti, Annamaria Pisi, Bruno Biavati, Diana Di Gioia
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2180-12-158

Storage conditions of intestinal microbiota matter in metagenomic analysis
Cited by: 190
Author(s): Silvia T. Cardona, Anat Eck, Montserrat Cassellas, Milagros Gallart, Carmen Alastrue, Joël Doré, Fernando Azpiroz, Joaquím Roca, Francisco Guarner, Chaysavanh Manichanh
Software Mentions: 1
Published: over 14 years ago

10.1186/s12867-015-0044-6

Deciphering targeting rules of splicing modulator compounds: case of TG003
Cited by: 22
Author(s): Masayuki Sakuma, Kei Iida, Masatoshi Hagiwara
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2199-11-98

Characterization, phylogeny, alternative splicing and expression of Sox30 gene
Cited by: 49
Author(s): Fangfang Han, Zhijian Wang, Fengrui Wu, Zhihao Liu, Biao Huang, Deshou Wang
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2202-10-86

c-MycERTAM transgene silencing in a genetically modified human neural stem cell line implanted into MCAo rodent brain
Cited by: 35
Author(s): Lara Stevanato, Randolph Corteling, Paul Stroemer, Andrew Hope, JM Heward, Erik Miljan, John D. Sinden
Software Mentions: 1
Published: over 17 years ago

10.1186/s12870-020-02439-8

Transcriptome analysis of lateral buds from Phyllostachys edulis rhizome during germination and early shoot stages
Cited by: 17
Author(s): Yuting Shou, Jinyuan Chen, Yulong Ding
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-13-128

Functional characterization of a serine-threonine protein kinase from Bambusa balcooathat implicates in cellulose overproduction and superior quality fiber formation
Cited by: 14
Author(s): Jayadri Sekhar Ghosh, Shubho Chaudhuri, Nrisingha Dey, Amita Pal
Software Mentions: 1
Published: about 13 years ago

10.1186/s12870-018-1231-7

The walnut JrVHAG1 gene is involved in cadmium stress response through ABA-signal pathway and MYB transcription regulation
Cited by: 43
Author(s): Zhenggang Xu, Ge Yu, Wan Zhang, Yunlin Zhao, Guiyan Yang
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12870-018-1470-7

Two virulent sRNAs identified by genomic sequencing target the type III secretion system in rice bacterial blight pathogen
Cited by: 7
Author(s): Yiqun Hu, Liyuan Zhang, Xuan Wang, Fengli Sun, Xiangxin Kong, Hansong Dong, Heng Xu
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2229-12-65

Comparative analyses reveal potential uses of Brachypodium distachyonas a model for cold stress responses in temperate grasses
Cited by: 52
Author(s): Chuan Li, Heidi Rudi, Eric J. Stockinger, Hongmei Cheng, Mengji Cao, Samuel E. Fox, Todd C. Mockler, Bjørge Westereng, Siri Fjellheim, Odd Arne Rognli, Simen Rød Sandve
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-7-36

Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa
Cited by: 62
Author(s): Torben Asp, Ursula Frei, Thomas Didion, Kristian Nielsen, Thomas Lübberstedt
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2229-12-105

Local and systemic changes in expression of resistance genes, nb-lrr genes and their putative microRNAs in norway spruce after wounding and inoculation with the pathogen ceratocystis polonica
Cited by: 26
Author(s): Carl Gunnar Fossdal, Nadeem Yaqoob, Paal Krokene, Harald Kvaalen, Halvor Solheim, Igor Yakovlev
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12870-020-02781-x

Genome-wide identification and characterization of small auxin-up RNA (SAUR) gene family in plants: evolution and expression profiles during normal growth and stress response
Cited by: 21
Author(s): Hao Zhang, Yu Zhou, Xiaodie Yao, Jingli Chen, Xing Chen, Huiwen Zhou, Yuxia Lou, Feng Ming, Yue Jin
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2229-10-197

Genome-scale identification of Soybean BURP domain-containing genes and their expression under stress treatments
Cited by: 56
Author(s): Xu Hua, Yaxuan Li, Yueming Yan, Ke Wang, Gao Ya, Yingkao Hu
Software Mentions: 1
Published: about 16 years ago

10.1186/s12870-016-0738-z

Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus
Cited by: 37
Author(s): Houmiao Wang, Yong Lei, Ling‐Shu Wan, Liying Yan, Jianwei Lv, Xiaofeng Dai, Xiaoping Ren, Wanshou Guo, Huifang Jiang, Boshou Liao
Software Mentions: 1
Published: over 10 years ago

Projects: pypi: blast

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Science Score: 65/100

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Papers Mentioning blast 1,819