Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: blast

https://packages.ecosyste.ms/registries/pypi.org/packages/blast

a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
3 versions
Latest release: over 12 years ago
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Papers Mentioning blast 1,819

10.1371/journal.pntd.0004225
Molecular Epidemiology of Amoebiasis: A Cross-Sectional Study among North East Indian Population
Cited by: 52
Author(s): Joyobrato Nath, Sankar Kumar Ghosh, Baby Singha, Jaishree Paul
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pntd.0000600
Transcriptional Changes in Schistosoma mansoni during Early Schistosomula Development and in the Presence of Erythrocytes
Cited by: 72
Author(s): Geoffrey N. Gobert, Minh Tran, Luke Moertel, Jason Mulvenna, Malcolm K. Jones, Donald P. McManus, Alex Loukas
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0006388
Persistent Wolbachia and Cultivable Bacteria Infection in the Reproductive and Somatic Tissues of the Mosquito Vector Aedes albopictus
Cited by: 96
Author(s): Karima Zouache, Denis Voronin, Van Tran-Van, Laurence Mousson, Anna‐Bella Failloux, Patrick Mavingui
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0033621
Analysis of Expressed Sequence Tags and Characterization of a Novel Gene, Slmg7, in the Midgut of the Common Cutworm, Spodoptera litura
Cited by: 8
Author(s): Wenyin He, Zhongchen Rao, Daohua Zhou, Sichun Zheng, Wei‐Hua Xu, Qili Feng
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0202848
Unigene-based RNA-seq provides insights on drought stress responses in Marsdenia tenacissima
Cited by: 7
Author(s): Hengling Meng, Wei Zhang, Guanghui Zhang, Jianjun Wang, Meng Zhang, Guangqiang Long, Shengchao Yang
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0005381
In Vivo Tumor Targeting and Imaging with Engineered Trivalent Antibody Fragments Containing Collagen-Derived Sequences
Cited by: 53
Author(s): Ángel M. Cuesta, David Sánchez‐Martín, Laura Sanz, Jaume Bonet, Marta Compte, Leonor Kremer, Francisco J. Blanco, Baldomero Oliva, Luís Álvarez‐Vallina
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0164697
Immunomodulatory Effects of Different Lactic Acid Bacteria on Allergic Response and Its Relationship with In Vitro Properties
Cited by: 35
Author(s): Chunqing Ai, Na Ma, Qiuxiang Zhang, Gang Wang, Xiaoming Liu, Fengwei Tian, Pei Chen, Wei Chen
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0185015
Gene expression analysis of primordial shoot explants collected from mature white spruce (Picea glauca) trees that differ in their responsiveness to somatic embryogenesis induction
Cited by: 7
Author(s): Robert G. Rutledge, Don Stewart, Catherine Overton, Krystyna Klimaszewska
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0079490
Potential Human Pathogenic Bacteria in a Mixed Urban Watershed as Revealed by Pyrosequencing
Cited by: 54
Author(s): A. Mark Ibekwe, Menu B. Leddy, Shelton E. Murinda
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0037355
A Predictive Model of Intein Insertion Site for Use in the Engineering of Molecular Switches
Cited by: 15
Author(s): James R. Apgar, M. Kyle Ross, Xiao Zuo, Sarah Dohle, Derek Sturtevant, Binzhang Shen, Humberto de la Vega, Philip A. Lessard, G. Lázár, R. Michael Raab
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0030943
Mitochondrial-Nuclear DNA Interactions Contribute to the Regulation of Nuclear Transcript Levels as Part of the Inter-Organelle Communication System
Cited by: 20
Author(s): Chris D. M. Rodley, Ralph S. Grand, Lutz R. Gehlen, Gary Greyling, MaryPat Jones, Justin M. O’Sullivan
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0037405
HeT-A_pi1, a piRNA Target Sequence in the Drosophila Telomeric Retrotransposon HeT-A, Is Extremely Conserved across Copies and Species
Cited by: 3
Author(s): Natalia Petit, David Piñeyro, Elisenda López-Panadès, Elena Casacuberta, Arcadi Navarro
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0145861
Application of a Novel “Pan-Genome”-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains
Cited by: 8
Author(s): Diego Chaves‐Moreno, Melissa L. Wos‐Oxley, Ruy Jáuregui, Eva Medina, Alan Oxley, Dietmar H. Pieper
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0037104
De-Novo Transcriptome Sequencing of a Normalized cDNA Pool from Influenza Infected Ferrets
Cited by: 12
Author(s): Jeremy V. Camp, Thomas Svensson, Alexis McBrayer, Colleen B. Jonsson, Peter Liljeström, Carl E.G. Bruder
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0004833
An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved
Cited by: 101
Author(s): Joseph J. Gillespie, Nicole C. Ammerman, Sheila M. Dreher-Lesnick, M. Sayeedur Rahman, Micah J. Worley, João Carlos Setúbal, Bruno W. S. Sobral, Abdu F. Azad
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0117163
The Search for Therapeutic Bacteriophages Uncovers One New Subfamily and Two New Genera of Pseudomonas-Infecting Myoviridae
Cited by: 32
Author(s): H. Mathieu, Louis‐Marie Bobay, Anne Chevallereau, Emilie Saussereau, Pieter‐Jan Ceyssens, Laurent Debarbieux
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0106201
Comparative Transcriptomic Characterization of the Early Development in Pacific White Shrimp Litopenaeus vannamei
Cited by: 89
Author(s): Jiankai Wei, Xiaojun Zhang, Yang Yu, Hao Huang, Fuhua Li, Jianhai Xiang
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0234335
Identification of genomic regions associated with shoot fly resistance in maize and their syntenic relationships in the sorghum genome
Cited by: 9
Author(s): Yogesh Vikal, Arshpreet Kaur, Jawala Jindal, Kirandeep Kaur, Devendra Pathak, Tosh Garg, Ashanpreet Singh, Princepal Singh, Inderjit Singh Yadav
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0004352
At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1
Cited by: 129
Author(s): John P. Hagan, Brittany L. O'Neill, Colin L. Stewart, Serguei Kozlov, Carlo M. Croce
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0006607
Subcomplex Iλ Specifically Controls Integrated Mitochondrial Functions in Caenorhabditis elegans
Cited by: 32
Author(s): Marni J. Falk, Julie Rosenjack, Erzsébet Polyák, Wichit Suthammarak, Zhongxue Chen, Phil G. Morgan, Margaret M. Sedensky
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0175702
Genetic and epigenetic changes in host ABCB1 influences malaria susceptibility to Plasmodium falciparum
Cited by: 19
Author(s): Himanshu Gupta, Sima Chaudhari, Amit Rai, Smitha Bhat, Pratima Kumari Sahu, Manjunath Hande, Sydney C. D’Souza, Shashikiran Umakanth, Kapaettu Satyamoorthy
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0187858
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
Cited by: 25
Author(s): Zhigang Zhu, Samantha Joan Noel, Gareth Frank Difford, Waleed Abu Al‐Soud, Asker Brejnrod, Søren J. Sørensen, Jan Lassen, Peter Løvendahl, Ole Højberg
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0093497
Solenopsis invicta virus 3: Mapping of Structural Proteins, Ribosomal Frameshifting, and Similarities to Acyrthosiphon pisum virus and Kelp fly virus
Cited by: 17
Author(s): Steven M. Valles, Susanne Bell, Andrew E. Firth
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0151633
Differential Growth Responses of Marine Phytoplankton to Herbicide Glyphosate
Cited by: 36
Author(s): Cong Wang, Xin Lin, Ling Li, Senjie Lin
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0026060
R1507, an Anti-Insulin-Like Growth Factor-1 Receptor (IGF-1R) Antibody, and EWS/FLI-1 siRNA in Ewing's Sarcoma: Convergence at the IGF/IGFR/Akt Axis
Cited by: 33
Author(s): Helen J. Huang, Laura S. Angelo, Jordi Rodón, Michael Sun, Klaus Peter Kuenkele, Henrique A. Parsons, Jonathan C. Trent, Razelle Kurzrock
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0060843
CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes
Cited by: 178
Author(s): Sheng-Di Lin, Yu-Chieh Liao
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0060896
Evolution of Hepatic Glucose Metabolism: Liver-Specific Glucokinase Deficiency Explained by Parallel Loss of the Gene for Glucokinase Regulatory Protein (GCKR)
Cited by: 11
Author(s): Zhao Yang Wang, Ling Jin, Tan H, David M. Irwin
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0173696
Novel copy number variation of the TGFβ3 gene is associated with TGFβ3 gene expression and duration of fertility traits in hens
Cited by: 7
Author(s): Lantao Gu, Chenghao Sun, Yangzhang Gong, Mei Yu, Shijun Li
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0025648
MYCT1-TV, A Novel MYCT1 Transcript, Is Regulated by c-Myc and May Participate in Laryngeal Carcinogenesis
Cited by: 20
Author(s): Shuang Fu, Yan Guo, Hong Chen, Zhonghua Xu, Guang-Bin Qiu, Ming Zhong, Kun Sun, Wei‐Neng Fu
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0032990
Proteomic Analysis of Fusarium solani Isolated from the Asian Longhorned Beetle, Anoplophora glabripennis
Cited by: 31
Author(s): Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0025773
Miniature Transposable Sequences Are Frequently Mobilized in the Bacterial Plant Pathogen Pseudomonas syringae pv. phaseolicola
Cited by: 21
Author(s): Leire Bardaji, Maite Añorga, Robert W. Jackson, Alejandro Martínez-Bilbao, Natalia Yanguas‐Casás, Jesús Murillo
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0169196
Novel Role of 3’UTR-Embedded Alu Elements as Facilitators of Processed Pseudogene Genesis and Host Gene Capture by Viral Genomes
Cited by: 12
Author(s): Domènec Farré, Pablo Engel, Ana Angulo
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0101177
Microsatellite Repeat Instability Fuels Evolution of Embryonic Enhancers in Hawaiian Drosophila
Cited by: 12
Author(s): Andrew Brittain, Elizabeth Stroebele, Albert Erives
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0084556
Genome-Wide Survey and Expression Analysis of the Putative Non-Specific Lipid Transfer Proteins in Brassica rapa L
Cited by: 45
Author(s): Jun Li, Guizhen Gao, Kun Xu, Biyun Chen, Guiqin Yan, Li Feng, Jiangwei Qiao, Ziyang Wang, Xiaoming Wu
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0081661
Recipe for a Busy Bee: MicroRNAs in Honey Bee Caste Determination
Cited by: 60
Author(s): Xiangqian Guo, Songkun Su, Geir Skogerboe, Shuanjin Dai, W. Li, Zhiguo Li, Fang Liu, Ruifeng Ni, Yu Guo, Shenglu Chen, Shaowu Zhang, Runsheng Chen
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0016069
Ocean Acidification at High Latitudes: Potential Effects on Functioning of the Antarctic Bivalve Laternula elliptica
Cited by: 149
Author(s): Vonda J. Cummings, Judi E. Hewitt, Anthony van Rooyen, Kim Currie, Samuel Beard, Simon F. Thrush, Joanna Norkko, Neill Barr, Philip Heath, Jane Halliday, Richard Sedcole, A. J. Gomez, Christina M. McGraw, Victoria J. Metcalf
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0205954
De Novo assembly, characterization and development of EST-SSRs from Bletilla striata transcriptomes profiled throughout the whole growing period
Cited by: 14
Author(s): Delin Xu, Hongbo Chen, Murat Acı, Yong‐Bao Pan, Yanni Shangguan, Jie Ma, Lin Li, Gang Qian, Qianxing Wang
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0250408
Molecular characterization of Gyps africanus (African white-backed vulture) organic anion transporter 1 and 2 expressed in the kidney
Cited by: 0
Author(s): Bono Nethathe, Rephima M. Phaswane, Aron Abera, Vinny Naidoo
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0069579
Exploring the Host Parasitism of the Migratory Plant-Parasitic Nematode Ditylenchus destuctor by Expressed Sequence Tags Analysis
Cited by: 25
Author(s): Huan Peng, Bingli Gao, Lingan Kong, Qinghua Yu, Wenkun Huang, Xufeng He, Haoyu Long, Deliang Peng
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0067729
Introgressive Hybridization between Anciently Diverged Lineages of Silene (Caryophyllaceae)
Cited by: 14
Author(s): Anna Petri, Bernard E. Pfeil, Bengt Oxelman
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0008361
Genome Sequence of the Endosymbiont Rickettsia peacockii and Comparison with Virulent Rickettsia rickettsii: Identification of Virulence Factors
Cited by: 115
Author(s): Roderick F. Felsheim, Timothy J. Kurtti, Ulrike G. Munderloh
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0154609
Genotyping by Sequencing Using Specific Allelic Capture to Build a High-Density Genetic Map of Durum Wheat
Cited by: 22
Author(s): Yan Holtz, Morgane Ardisson, Vincent Ranwez, Alban Besnard, Philippe Leroy, Gérard Poux, Pierre Roumet, Véronique Viader, Sylvain Santoni, Jacques David
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0114568
Identification of Regulatory Genes Implicated in Continuous Flowering of Longan (Dimocarpus longan L.)
Cited by: 26
Author(s): Tianqi Jia, Danfeng Wei, Shu Meng, Andrew C. Allan, Lihui Zeng
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0211061
Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers
Cited by: 28
Author(s): Manoj Kumar Yadav, S Aravindan, Umakanta Ngangkham, S. Raghu, S.R. Prabhukarthikeyan, U. Keerthana, Bishnu Charan Marndi, Totan Adak, Sushmita Munda, Rupesh Deshmukh, D. Pramesh, Sanghamitra Samantaray, Prakash Chandra Rath
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0150892
Transcriptomic Analysis of Differentially Expressed Genes during Flower Organ Development in Genetic Male Sterile and Male Fertile Tagetes erecta by Digital Gene-Expression Profiling
Cited by: 18
Author(s): Ye Ai, Qinghua Zhang, Weining Wang, Chunyu Zhang, Zhe Cao, Manzhu Bao, Yan‐Hong He
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0076957
Transcriptome-Mining for Single-Copy Nuclear Markers in Ferns
Cited by: 65
Author(s): Carl J. Rothfels, Anders Larsson, Fay‐Wei Li, Erin M. Sigel, Layne Huiet, Dylan O. Bürge, Markus Ruhsam, Sean W. Graham, D. W. Stevenson, Gane Ka‐Shu Wong, Petra Korall, Kathleen M. Pryer
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0153810
The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding
Cited by: 26
Author(s): Nora Gutsche, Sabine Zachgo
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0020968
Haloquadratum walsbyi : Limited Diversity in a Global Pond
Cited by: 99
Author(s): Mike Dyall‐Smith, Friedhelm Pfeiffer, Kathrin Klee, Peter Palm, Karin Gross, Stephan C. Schuster, Markus Rampp, Dieter Oesterhelt
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0005010
The Early Apoptotic DNA Fragmentation Targets a Small Number of Specific Open Chromatin Regions
Cited by: 15
Author(s): Miriam Di Filippo, Giorgio Bernardi
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0097431
Single Nucleotide Polymorphisms Reveal Genetic Structuring of the Carpathian Newt and Provide Evidence of Interspecific Gene Flow in the Nuclear Genome
Cited by: 21
Author(s): Piotr Zieliński, Katarzyna Dudek, Michał Stuglik, Marcin Liana, Wiesław Babik
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0026411
Differential Gene Expression at Coral Settlement and Metamorphosis - A Subtractive Hybridization Study
Cited by: 48
Author(s): David C. Hayward, Suzannah Hetherington, Carolyn A. Behm, Lauretta C. Grasso, Sylvain Forêt, David J. Miller, Eldon E. Ball
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0158112
Fungal Elicitor MoHrip2 Induces Disease Resistance in Rice Leaves, Triggering Stress-Related Pathways
Cited by: 7
Author(s): Najeeb Ullah Khan, Mengjie Liu, Xiufen Yang, Dewen Qiu
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0004413
A Comparative Chemogenomics Strategy to Predict Potential Drug Targets in the Metazoan Pathogen, Schistosoma mansoni
Cited by: 94
Author(s): Conor R. Caffrey, Andreas Rohwer, Frank Oellien, Richard J. Marhöfer, Bryony Braschi, Guilherme Oliveira, James H. McKerrow, Paul M. Selzer
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0069743
Genome-Wide Analysis of Small RNA and Novel MicroRNA Discovery during Fiber and Seed Initial Development in Gossypium hirsutum. L
Cited by: 17
Author(s): Hua Zhang, Qun Wan, Wenxue Ye, Yuanda Lv, Huaitong Wu, Tianzhen Zhang
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0151186
Proteomic Analysis of the Secretome of Cellulomonas fimi ATCC 484 and Cellulomonas flavigena ATCC 482
Cited by: 19
Author(s): Warren W. Wakarchuk, Denis Brochu, Simon J. Foote, Anna Robotham, Hirak Saxena, Tamara Erak, John Kelly
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0056697
Overexpression of the Artemisia Orthologue of ABA Receptor, AaPYL9, Enhances ABA Sensitivity and Improves Artemisinin Content in Artemisia annua L
Cited by: 43
Author(s): Fangyuan Zhang, Xu Lu, Zongyou Lv, Ling Zhang, Mengmeng Zhu, Weimin Jiang, Guofeng Wang, Xiaofen Sun, Kexuan Tang
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0003764
Clostridium perfringens Delta Toxin Is Sequence Related to Beta Toxin, NetB, and Staphylococcus Pore-Forming Toxins, but Shows Functional Differences
Cited by: 45
Author(s): Maria Manich, Oliver Knapp, Maryse Gibert, Elke Maier, Colette Jolivet-Reynaud, Blandine Geny, Roland Benz, Michel R. Popoff
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pone.0116457
Strain-Level Diversity of Secondary Metabolism in Streptomyces albus
Cited by: 82
Author(s): Ryan F. Seipke
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0025973
Regulation of DCC Localization by HTZ-1/H2A.Z and DPY-30 Does not Correlate with H3K4 Methylation Levels
Cited by: 7
Author(s): Emily L. Petty, Emily Laughlin, Györgyi Csankovszki
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0184528
Development of hop transcriptome to support research into host-viroid interactions
Cited by: 24
Author(s): Tine Pokorn, Sebastjan Radišek, Branka Javornik, Nataša Štajner, Jernej Jakše
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0069955
Genome Wide Analysis of the Apple MYB Transcription Factor Family Allows the Identification of MdoMYB121 Gene Confering Abiotic Stress Tolerance in Plants
Cited by: 156
Author(s): Zhong-Hui Cao, Shizhong Zhang, Rong-Kai Wang, Ruifen Zhang, Yu‐Jin Hao
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0015388
Structural Relationships in the Lysozyme Superfamily: Significant Evidence for Glycoside Hydrolase Signature Motifs
Cited by: 82
Author(s): A. Wohlkonig, Joëlle Huet, Yvan Looze, René Wintjens
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0094779
Analysis of Insecticide Resistance-Related Genes of the Carmine Spider Mite Tetranychus cinnabarinus Based on a De Novo Assembled Transcriptome
Cited by: 37
Author(s): Zhenbo Xu, Wenyi Zhu, Yanchao Liu, Xing Liu, Qiushuang Chen, Peng Miao, Xiangzun Wang, Guangmao Shen, Lin He
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0195138
Genome-wide identification of wheat (Triticum aestivum) expansins and expansin expression analysis in cold-tolerant and cold-sensitive wheat cultivars
Cited by: 20
Author(s): Junfeng Zhang, Yongqing Xu, J. Q. Dong, Lina Peng, Feng Xu, Xu Wang, Fĕi Li, Miao Yu, Shu-Kuan Yao, Qing Shan Zhao, Shanshan Feng, HU Bao-zhong
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0057464
Pseudomonas syringae pv. actinidiae from Recent Outbreaks of Kiwifruit Bacterial Canker Belong to Different Clones That Originated in China
Cited by: 119
Author(s): Margaret I. Butler, Peter A. Stockwell, Michael A. Black, Robert C. Day, Iain L. Lamont, Russell T. M. Poulter
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0164293
Genome-Wide Association of Stem Water Soluble Carbohydrates in Bread Wheat
Cited by: 31
Author(s): Yan Dong, Jindong Liu, Yan Zhang, Hao Geng, Awais Rasheed, Yonggui Xiao, Shuanghe Cao, Luping Fu, Jun Yan, Weie Wen, Zhang Yong, Ruilian Jing, Xianchun Xia, Zhonghu He
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0064799
Draft Genome Sequence, and a Sequence-Defined Genetic Linkage Map of the Legume Crop Species Lupinus angustifolius L
Cited by: 99
Author(s): Huaan Yang, Ye Tao, Zequn Zheng, Qisen Zhang, Gaofeng Zhou, Mark Sweetingham, John Howieson, Chengdao Li
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0226107
Optimizing sgRNA length to improve target specificity and efficiency for the GGTA1 gene using the CRISPR/Cas9 gene editing system
Cited by: 26
Author(s): Anders W. Matson, Nora Hosny, Zachary Swanson, Bernhard J. Hering, Christopher Burlak
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0106649
Two Low Coverage Bird Genomes and a Comparison of Reference-Guided versus De Novo Genome Assemblies
Cited by: 25
Author(s): Daren C. Card, Drew R. Schield, Jacobo Reyes-Velasco, Matthew K. Fujita, Audra L. Andrew, Sara J. Oyler‐McCance, Jennifer A. Fike, Diana F. Tomback, Robert P. Ruggiero, Todd A. Castoe
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0126138
Convergent Evolution at the Gametophytic Self-Incompatibility System in Malus and Prunus
Cited by: 43
Author(s): Bruno Aguiar, Jorge Vieira, Ana Cunha, Nuno A. Fonseca, Amy Iezzoni, Steve van Nocker, Cristina Vieira
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0137925
Transcriptome Analysis Reveals Key Flavonoid 3′-Hydroxylase and Flavonoid 3′,5′-Hydroxylase Genes in Affecting the Ratio of Dihydroxylated to Trihydroxylated Catechins in Camellia sinensis
Cited by: 40
Author(s): Kang Wei, Liyuan Wang, Chengcai Zhang, Liyun Wu, Hailin Li, Fen Zhang
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0104518
Transcriptional Profiling in Rat Hair Follicles following Simulated Blast Insult: A New Diagnostic Tool for Traumatic Brain Injury
Cited by: 5
Author(s): Jing Zhang, Lisa Carnduff, Grant Norman, Tyson Josey, Yushan Wang, Thomas W. Sawyer, Christopher J. Martyniuk, Valérie S. Langlois
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0175569
New insights into valve-related intramural and intracellular bacterial diversity in infective endocarditis
Cited by: 22
Author(s): Andreas Oberbach, Nadine Schlichting, Stefan Feder, Stefanie Lehmann, Yvonne Kullnick, Tilo Buschmann, Conny Blumert, Friedemann Horn, Jochen Neuhaus, Ralph Neujahr, Erik Bagaev, Christian Hagl, Maximilian Pichlmaier, Arne C. Rodloff, Sandra Gräber, Katharina Kirsch, Monica Sandri, Vivek Kumbhari, Armirhossein Behzadi, Amirali Behzadi, João Carlos Correia, Friedrich W. Mohr, M. Friedrich
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0144275
Investigation of a Quadruplex-Forming Repeat Sequence Highly Enriched in Xanthomonas and Nostoc sp.
Cited by: 12
Author(s): Charlotte Rehm, Lena A. Wurmthaler, Yuanhao Li, Tancred Frickey, Jörg S. Hartig
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0154582
Mitochondrial DNA Rearrangement Spectrum in Brain Tissue of Alzheimer’s Disease: Analysis of 13 Cases
Cited by: 12
Author(s): Yucai Chen, Changsheng Liu, W. Davis Parker, Hongyi Chen, Thomas G. Beach, Xinhua Liu, Geidy E. Serrano, Yanfen Lu, Jian Huang, Kunfang Yang, Chunmei Wang
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0124617
Whole Genome Sequencing of Elite Rice Cultivars as a Comprehensive Information Resource for Marker Assisted Selection
Cited by: 64
Author(s): Jorge Duitama, Alexander Silva, Yamid Sanabria Gongora, Daniel Felipe Cruz, Constanza Quintero, Carolina Ballen, Mathias Lorieux, Brian E. Scheffler, Andrew Farmer, Edgar Torres, James H. Oard, Joe Tohmé
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0169116
Production of Secondary Metabolites in Extreme Environments: Food- and Airborne Wallemia spp. Produce Toxic Metabolites at Hypersaline Conditions
Cited by: 36
Author(s): Sašo Jančič, Jens Christian Frisvad, Dragi Kocev, Cene Gostinčar, Sašo Džeroski, Nina Gunde‐Cimerman
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0047901
Osteopontin-Enhanced Hepatic Metastasis of Colorectal Cancer Cells
Cited by: 39
Author(s): Jianjin Huang, Pan Chi, Hanguang Hu, Shu Zheng, Ling Ding
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0043331
Global Transcriptome Analysis of the Scorpion Centruroides noxius: New Toxin Families and Evolutionary Insights from an Ancestral Scorpion Species
Cited by: 66
Author(s): Martha Rendón-Anaya, Luis Delaye, Lourival D. Possani, Alfredo Herrera-Estrella
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0067824
The Effects of a Probiotic Yeast on the Bacterial Diversity and Population Structure in the Rumen of Cattle
Cited by: 129
Author(s): Eric Pinloche, Neil R. McEwan, Jean-Philippe Marden, Corine Bayourthe, Eric Auclair, C. J. Newbold
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0092621
SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes
Cited by: 95
Author(s): Guénola Drillon, Alessandra Carbone, Gilles Fischer
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0102963
High-Throughput Sequencing and De Novo Assembly of the Isatis indigotica Transcriptome
Cited by: 30
Author(s): Xiao‐Qing Tang, Yunhua Xiao, Tingting Lv, Fangquan Wang, Qian Zhu, Tianqing Zheng, Jie Yang
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0212005
Secreted frizzled related protein is a target of PaxB and plays a role in aquiferous system development in the freshwater sponge, Ephydatia muelleri
Cited by: 7
Author(s): Chelsea Hall, Melanie Rodriguez, Josephine Garcia, Dora Posfai, Rachel DuMez, Erik Wictor, Omar A. Quintero, Malcolm Hill, Ajna S. Rivera, Andrew P. Hill
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0113821
Subgenotypes and Mutations in the S and Polymerase Genes of Hepatitis B Virus Carriers in the West Bank, Palestine
Cited by: 15
Author(s): Abdelnabi Zakeih, Niveen Saleh, Sabri Baraghithi, Dieter Glebe, Maysa Azzeh
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0002654
The Actinome of Dictyostelium discoideum in Comparison to Actins and Actin-Related Proteins from Other Organisms
Cited by: 34
Author(s): Jayabalan M. Joseph, Petra Fey, Nagendran Ramalingam, Xiao I. Liu, Meino Rohlfs, Angelika A. Noegel, Annette Müller‐Taubenberger, Gernot Glöckner, Michael Schleicher
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0166873
Quantitative Trait Locus Analysis of Late Leaf Spot Resistance and Plant-Type-Related Traits in Cultivated Peanut (Arachis hypogaea L.) under Multi-Environments
Cited by: 36
Author(s): Xiaojing Zhou, Youlin Xia, Liao Jun-hua, Kede Liu, Qiang Li, Yang Dong, Xiaoping Ren, Yuning Chen, Li Huang, Boshou Liao, Yong Lei, Liying Yan, Huifang Jiang
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0094091
Basic Helix-Loop-Helix Transcription Factor Bmsage Is Involved in Regulation of fibroin H-chain Gene via Interaction with SGF1 in Bombyx mori
Cited by: 29
Author(s): Xiaoming Zhao, Chun Lei, Qiongyan Li, Wenbo Hu, Mengting Zhou, Hongyi Nie, Yinxia Zhang, Zhangchuan Peng, Ping Zhao, Qingyou Xia
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0136625
Characterization of Two Metal Binding Lipoproteins as Vaccine Candidates for Enterococcal Infections
Cited by: 21
Author(s): Felipe Romero-Saavedra, Diana Laverde, Aurélie Budin-Verneuil, Cécile Muller, Benoı̂t Bernay, Abdellah Benachour, Axel Hartke, Johannes Hüebner
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0213566
Correction: Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers
Cited by: 11
Author(s): Manoj Kumar Yadav, S Aravindan, Umakanta Ngangkham, S. Raghu, S.R. Prabhukarthikeyan, U. Keerthana, Bishnu Charan Marndi, Totan Adak, Sushmita Munda, Rupesh Deshmukh, D. Pramesh, Sanghamitra Samantaray, Prakash Chandra Rath
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0078275
Diversity and Spatial Distribution of Hydrazine Oxidoreductase (hzo) Gene in the Oxygen Minimum Zone Off Costa Rica
Cited by: 31
Author(s): Linggang Kong, Hongmei Jing, Takafumi Kataoka, Carolyn Buchwald, Hongbin Liu
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0093894
LIMLE, a New Molecule Over-Expressed following Activation, Is Involved in the Stimulatory Properties of Dendritic Cells
Cited by: 1
Author(s): Laëtitia Le Texier, Justine Durand, Amélie Lavault, Philippe Hulin, Olivier Collin, Yvan Le Bras, Maria‐Cristina Cuturi, Elise Chiffoleau
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0068260
A Superfamily of DNA Transposons Targeting Multicopy Small RNA Genes
Cited by: 25
Author(s): Kenji Kojima, Jerzy Jurka
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0147197
Insight into the Salivary Gland Transcriptome of Lygus lineolaris (Palisot de Beauvois)
Cited by: 22
Author(s): Kurt C. Showmaker, Andrea Bednářová, Cathy Gresham, Chuan-Yu Hsu, Daniel G. Peterson, Natraj Krishnan
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0056998
De Novo Assembly of Mud Loach (Misgurnus anguillicaudatus) Skin Transcriptome to Identify Putative Genes Involved in Immunity and Epidermal Mucus Secretion
Cited by: 54
Author(s): Yong Long, Qing Li, Bolan Zhou, Guangliang Song, Tao Li
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0007105
The Feasibility of Using High Resolution Genome Sequencing of Influenza A Viruses to Detect Mixed Infections and Quasispecies
Cited by: 60
Author(s): Muthannan Andavar Ramakrishnan, Zheng Jin Tu, Sushmita Singh, Ashok Chockalingam, Marie Gramer, Ping Wang, Sagar M. Goyal, Ming‐Chien Yang, David A. Halvorson, Srinand Sreevatsan
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0130425
In-Depth Transcriptome Sequencing of Mexican Lime Trees Infected with Candidatus Phytoplasma aurantifolia
Cited by: 35
Author(s): Mohsen Mardi, Laleh Karimi Farsad, Javad Gharechahi, Ghasem Hosseini Salekdeh
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0210979
TLR4-interacting SPA4 peptide improves host defense and alleviates tissue injury in a mouse model of Pseudomonas aeruginosa lung infection
Cited by: 21
Author(s): Shanjana Awasthi, Bhupinder Singh, Vijay Ramani, Jun Xie, Stanley D. Kosanke
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0039861
Enhanced Transformation of TNT by Arabidopsis Plants Expressing an Old Yellow Enzyme
Cited by: 17
Author(s): Bo Zhu, Ri‐He Peng, Xin Fu, Xin Jin, Zhao Wang, Jing Xu, Ho Jae Han, Jian‐Jie Gao, Zhihong Xu, Lin Bian, Qizheng Yao
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0200494
Integrative approach on Pharyngodonidae (Nematoda: Oxyuroidea) parasitic in reptiles: Relationship among its genera, importance of their diagnostic features, and new data on Parapharyngodon bainae
Cited by: 7
Author(s): Felipe B. Pereira, José L. Luque, Luiz Eduardo Roland Tavares
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0187803
Performance of DNA metabarcoding, standard barcoding, and morphological approach in the identification of host–parasitoid interactions
Cited by: 31
Author(s): Martin Šigut, Martin Kostovčík, Hana Šigutová, Jiří Hulcr, Pavel Drozd, Jan Hrček
Software Mentions: 1
Published: almost 7 years ago