10.1371/journal.pone.0154061

Biochar, Bentonite and Zeolite Supplemented Feeding of Layer Chickens Alters Intestinal Microbiota and Reduces Campylobacter Load
Cited by: 54
Author(s): Tanka P. Prasai, Kerry B. Walsh, Surya P. Bhattarai, David J. Midmore, Thi Thu Hao Van, Robert J. Moore, Dragana Stanley
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0038809

Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates
Cited by: 13
Author(s): Mari Espelund, Marianne A. Minge, Tove M. Gabrielsen, Alexander J. Nederbragt, Kamran Shalchian-Tabrizi, Christian Otis, Monique Turmel, Claude Lemieux, Kjetill S. Jakobsen
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0117342

Transcriptome Sequencing of Codonopsis pilosula and Identification of Candidate Genes Involved in Polysaccharide Biosynthesis
Cited by: 33
Author(s): Jian Gao, Dong Wang, Ling Cao, Huifeng Sun
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0047275

Colinearity and Similar Expression Pattern of Rice DREB1s Reveal Their Functional Conservation in the Cold-Responsive Pathway
Cited by: 76
Author(s): Donghai Mao, Caiyan Chen
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0121525

Cytosolic 5’-Nucleotidase II Interacts with the Leucin Rich Repeat of NLR Family Member Ipaf
Cited by: 17
Author(s): Federico Cividini, Maria Grazia Tozzi, Alvaro Galli, Rossana Pesi, Marcella Camici, Charles Dumontet, Lars Petter Jordheim, Simone Allegrini
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0096242

A Role of Rab29 in the Integrity of the Trans-Golgi Network and Retrograde Trafficking of Mannose-6-Phosphate Receptor
Cited by: 64
Author(s): Shicong Wang, Zexu Ma, Xiaohui Xu, Zhen Wang, Lixiang Sun, Yunhe Zhou, Xue Lin, Wanjin Hong, Tuanlao Wang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0185830

A combined transcriptome and proteome analysis extends the allergome of house dust mite Dermatophagoides species
Cited by: 27
Author(s): Véronique Bordas‐Le Floch, Maxime Le Mignon, Lætitia Bussières, K. Jain, Armelle Martelet, Véronique Baron‐Bodo, Emmanuel Nony, Laurent Mascarell, Philippe Moingeon
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0115436

Molecular Evidence that Only Two Opsin Subfamilies, the Blue Light- (SWS2) and Green Light-Sensitive (RH2), Drive Color Vision in Atlantic Cod (Gadus morhua)
Cited by: 19
Author(s): Ragnhild Valen, Rolf B. Edvardsen, Anne Mette Søviknes, Øyvind Drivenes, Jon Vidar Helvik
Software Mentions: 1
Published: almost 12 years ago

10.1155/2015/782635

Analysis of<i>Polygala tenuifolia</i>Transcriptome and Description of Secondary Metabolite Biosynthetic Pathways by Illumina Sequencing
Cited by: 10
Author(s): Hua Tian, Xiaojun Xu, Fusheng Zhang, Yaoqin Wang, Song Guo, Xuemei Qin, Guanhua Du
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0069890

Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags
Cited by: 25
Author(s): Lingfei Shangguan, Han jinsoo, Emrul Kayesh, Xin Sun, Changqing Zhang, Tariq Pervaiz, Xicheng Wen, Jinggui Fang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0012338

Rapid Dopaminergic Modulation of the Fish Hypothalamic Transcriptome and Proteome
Cited by: 35
Author(s): Jason T. Popesku, Christopher J. Martyniuk, Nancy D. Denslow, Vance L. Trudeau
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0004277

Genetic Editing of HBV DNA by Monodomain Human APOBEC3 Cytidine Deaminases and the Recombinant Nature of APOBEC3G
Cited by: 71
Author(s): H. Mathieu, Denise Guétard, Rodolphe Suspène, Christophe Rusniok, Simon Wain‐Hobson, Jean‐Pierre Vartanian
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0171187

De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens
Cited by: 10
Author(s): Yanhe Li, Hanping Wang, Hong Yao, Paul O’Bryant, Dean Rapp, Liang Guo, Eman A. Waly
Software Mentions: 1
Published: almost 10 years ago

10.1155/2019/8987436

Comparative Genomic Analysis of <i>Rhodococcus equi</i>: An Insight into Genomic Diversity and Genome Evolution
Cited by: 6
Author(s): Jianchao Ying, Jun Ye, Teng Xu, Qian Wang, Qiyu Bao, Aifang Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-016-3064-9

Combined genomic and structural analyses of a cultured magnetotactic bacterium reveals its niche adaptation to a dynamic environment
Cited by: 17
Author(s): Ana Carolina Vieira Araújo, Viviana Morillo, Jefferson Cypriano, Lia Cardoso Rocha Saraiva Teixeira, Pedro Leão, Sidcley Lyra, Luiz Gonzaga Paula de Almeida, Dennis A. Bazylinski, Ana Tereza Ribeiro de Vasconcellos, Fernanda Abreu, Ulysses Lins
Software Mentions: 1
Published: about 10 years ago

10.1155/2013/857986

Identification of Cassava MicroRNAs under Abiotic Stress
Cited by: 41
Author(s): Carolina Ballén‐Taborda, Germán Plata, Sarah Ayling, Fausto Rodríguez-Zapata, Luís Augusto Becerra López-Lavalle, Jorge Duitama, Joseph M. Tohme
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0177606

Mitochondrial genome evolution in Alismatales: Size reduction and extensive loss of ribosomal protein genes
Cited by: 35
Author(s): Gitte Petersen, Argelia Cuenca, Athnanasios Zervas, Gregory T Ross, Sean W. Graham, Craig F. Barrett, Jerrold I. Davis, Ole Seberg
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0095384

The Microbial Diversity of Traditional Spontaneously Fermented Lambic Beer
Cited by: 182
Author(s): Freek Spitaels, Anneleen D. Wieme, Maarten Janssens, Maarten Aerts, Heide-Marie Daniel, Anita Van Landschoot, Luc De Vuyst, Peter Vandamme
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0072645

Secreted Phosphoprotein 24 kD (Spp24) and Spp14 Affect TGF-β Induced Bone Formation Differently
Cited by: 17
Author(s): Haijun Tian, Xiaojun Bi, Chenshuang Li, Ke Wei Zhao, Elsa J. Brochmann, Scott R. Montgomery, Bayan Aghdasi, Deyu Chen, Michael D. Daubs, Jeffrey C. Wang, Samuel S. Murray
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0080346

High Endemicity and Low Molecular Diversity of Hepatitis B Virus Infections in Pregnant Women in a Rural District of North Cameroon
Cited by: 48
Author(s): Alexandra Ducancelle, P. Abgueguen, Jacques Birguel, Waël Mansour, Adeline Pivert, Hélène Le Guillou‐Guillemette, Jean-Jacques Sobnangou, Amélie Rameau, Jean‐Marie Huraux, Françoise Lunel‐Fabiani
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0124507

The Development and Evaluation of a Loop-Mediated Isothermal Amplification Method for the Rapid Detection of Salmonella enterica serovar Typhi
Cited by: 30
Author(s): Fenxia Fan, Pengcheng Du, Biao Kan, Mei Yan
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0143280

Identification of 14-3-3 Family in Common Bean and Their Response to Abiotic Stress
Cited by: 23
Author(s): Ruihua Li, Xiaotong Jiang, Dong Jin, Sangeeta Dhaubhadel, Shaomin Bian, Xuyan Li
Software Mentions: 1
Published: almost 11 years ago

10.18632/oncotarget.9611

Long noncoding RNA ZFAS1 promotes gastric cancer cells proliferation by epigenetically repressing KLF2 and NKD2 expression
Cited by: 126
Author(s): Fengqi Nie, Xiang Yu, Ming‐De Huang, Yunfei Wang, Min Xie, Hongwei Ma, Zhaoxia Wang, Wei De, Ming Sun
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-021-07490-9

Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca
Cited by: 50
Author(s): Yan Cheng, Xiaoxue He, S. V. G. N. Priyadarshani, Yu Wang, Ye Li, Chao Shi, Kangzhuo Ye, Qiao Zhou, Zhihua Luo, Fang Deng, Ling Cao, Ping Zheng, Mohammad Aslam, Yuan Qin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0211989

Nocardia polymerase chain reaction (PCR)-based assay performed on bronchoalveolar lavage fluid after lung transplantation: A prospective pilot study
Cited by: 17
Author(s): Julien Coussement, David Lebeaux, Najla El Bizri, Vincent Claes, Michel Kohnen, Deborah Steensels, Isabelle Étienne, Hélène Salord, Emmanuelle Bergeron, Verónica Rodríguez-Nava
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0054084

40S Ribosome Biogenesis Co-Factors Are Essential for Gametophyte and Embryo Development
Cited by: 69
Author(s): Sandra Missbach, Benjamin L. Weis, Roman Martin, Stefan Simm, Markus T. Bohnsack, Enrico Schleiff
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12864-021-07908-4

Mapping of quantitative trait loci underlying a magic trait in ongoing ecological speciation
Cited by: 3
Author(s): Tetsumi Takahashi, Atsushi J. Nagano, Teiji Sota
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-12-88

The mining of toxin-like polypeptides from EST database by single residue distribution analysis
Cited by: 35
Author(s): Sergey A. Kozlov, Eugene V. Grishin
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-13-331

Genomic and proteomic characterization of SuMu, a Mu-like bacteriophage infecting Haemophilus parasuis
Cited by: 18
Author(s): Emilie S. Zehr, Louisa B. Tabatabai, Darrell O. Bayles
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0181037

Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield
Cited by: 8
Author(s): Shukun Jiang, Shuang Sun, Liangming Bai, Guohua Ding, Tongtong Wang, Tianshu Xia, Hui Jiang, Xijuan Zhang, Fengming Zhang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-018-5232-6

Transcriptomic time-series analysis of early development in olive from germinated embryos to juvenile tree
Cited by: 9
Author(s): Jaime Jiménez-Ruiz, María de la O Leyva-Pérez, Isabel Vidoy-Mercado, Araceli Barceló, Francisco Luque
Software Mentions: 1
Published: almost 8 years ago

10.1155/2018/2368597

Molecular Characterization of Newcastle Disease Virus from Backyard Poultry Farms and Live Bird Markets in Kenya
Cited by: 15
Author(s): Irene Ogali, Lucy Wamuyu, Jacqueline Kasiiti Lichoti, Erick Ouma Mungube, Bernard Agwanda, Sheila Ommeh
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0200511

Discovery and characterization of novel Aspergillus fumigatus mycoviruses
Cited by: 38
Author(s): Jan Zoll, Paul E. Verweij, Willem J. G. Melchers
Software Mentions: 1
Published: over 8 years ago

10.1007/s00253-015-7058-3

Laboratory-scale bioaugmentation relieves acetate accumulation and stimulates methane production in stalled anaerobic digesters
Cited by: 41
Author(s): Jennifer Town, Tim J. Dumonceaux
Software Mentions: 1
Published: about 11 years ago

10.1099/ijsem.0.004804

Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil
Cited by: 11
Author(s): Dimitry Y. Sorokin, Tatjana V. Khijniak, Alicia P. Zakharycheva, Alexander G. Elcheninov, Richard L. Hahnke, Olga V. Boueva, Elena V. Ariskina, Boyke Bunk, Ilya V. Kublanov, Lyudmila I. Evtushenko
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0117472

Androgen Receptor and Histone Lysine Demethylases in Ovine Placenta
Cited by: 32
Author(s): Ellane R. Cleys, Jennifer L. Halleran, Vanessa A. Enriquez, Juliano Coelho da Silveira, Rachel C. West, Quinton A. Winger, Russell V. Anthony, J.E. Bruemmer, Colin M. Clay, Gerrit J. Bouma
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0030591

Mutational Robustness of Gene Regulatory Networks
Cited by: 13
Author(s): Aalt D. J. van Dijk, S. van Mourik, Roeland C. H. J. van Ham
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0201880

Interaction between the cellular E3 ubiquitin ligase SIAH-1 and the viral immediate-early protein ICP0 enables efficient replication of Herpes Simplex Virus type 2 in vivo
Cited by: 4
Author(s): Julia Stephanie Czechowicz, Claus-Henning Nagel, Maike Voges, Michael Spohn, Martha M. Eibl, Joachim Hauber
Software Mentions: 1
Published: over 8 years ago

10.21307/jofnem-2019-006

First report of <i>Meloidogyne javanica</i> on Ginger and Turmeric in the United States
Cited by: 3
Author(s): Abolfazl Hajihassani, Weimin Ye, Brooke B. Hampton
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0172308

Viruses in case series of tumors: Consistent presence in different cancers in the same subject
Cited by: 6
Author(s): Laila Sara Arroyo Mühr, Maria Hortlund, Zurab Bzhalava, Sara Nordqvist Kleppe, Davit Bzhalava, Emilie Hultin, Joakim Dillner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0077217

Transcriptomic Analysis of Paulownia Infected by Paulownia Witches'-Broom Phytoplasma
Cited by: 65
Author(s): Hai-Qing Mou, Jie Lu, Shuifang Zhu, Cai-li Lin, Guozhong Tian, Xiaoyong Xu, Wenjun Zhao
Software Mentions: 1
Published: about 13 years ago

10.1186/s12864-021-07551-z

RNA-Seq analysis of blood meal induced gene-expression changes in Aedes aegypti ovaries
Cited by: 7
Author(s): Dilip K. Nag, Constentin Dieme, Pascal Lapierre, Erica Lasek‐Nesselquist, Laura D. Kramer
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0065682

Lipoprotein FtsB in Streptococcus pyogenes Binds Ferrichrome in Two Steps with Residues Tyr137 and Trp204 as Critical Ligands
Cited by: 7
Author(s): Hui Li, Nan Li, Qian Xu, Chuan-Le Xiao, Hongcui Wang, Zhong Guo, Jing Zhang, Xia Sun, Qing-Yu He
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0009083

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes
Cited by: 72
Author(s): Matthew R. Henn, Matthew B. Sullivan, Nicole Stange-Thomann, Marcia S. Osburne, Aaron M. Berlin, Libusha Kelly, Chandri Yandava, Chinnappa D. Kodira, Qiandong Zeng, Michael Weiand, Todd Sparrow, Sakina Saif, Georgia Giannoukos, Sarah Young, Chad Nusbaum, Bruce W. Birren, Sallie W. Chisholm
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2164-11-335

Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8
Cited by: 59
Author(s): Max Farnbacher, Thomas Jahns, Dirk Willrodt, Rolf Daniel, Rainer Haas, Alexander Goesmann, Stefan Kurtz, Gabriele Rieder
Software Mentions: 1
Published: over 16 years ago

10.1186/s12864-019-5937-1

Genome-wide characterization of SPL family in Medicago truncatula reveals the novel roles of miR156/SPL module in spiky pod development
Cited by: 17
Author(s): Hongfeng Wang, Zhichao Lu, Yiteng Xu, Lingcui Kong, Jiankui Shi, Yafei Liu, Chunxiang Fu, Xiaoshan Wang, Zeng‐Yu Wang, Chuanen Zhou, Li Han
Software Mentions: 1
Published: over 7 years ago

10.1038/s41419-021-03829-y

Recovery of human gut microbiota genomes with third-generation sequencing
Cited by: 10
Author(s): Yanfei Li, Yueling Jin, Jianming Zhang, Haoying Pan, Wu Lan, Dingsheng Liu, Jinlong Liu, Jing Hu, Junwei Shen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-018-1078-8

Bone marrow infiltrated Lnc-INSR induced suppressive immune microenvironment in pediatric acute lymphoblastic leukemia
Cited by: 22
Author(s): Yaping Wang, Xiaoyun Yang, Xiaoyan Sun, Liucheng Rong, Meiyun Kang, Peng Wu, Xiaohui Ji, Rufeng Lin, Jie Huang, Yue Xue, Yongjun Fang
Software Mentions: 1
Published: about 8 years ago

10.1186/1747-1028-7-21

Epitope of titin A-band-specific monoclonal antibody Tit1 5 H1.1 is highly conserved in several Fn3 domains of the titin molecule. Centriole staining in human, mouse and zebrafish cells
Cited by: 9
Author(s): Aavo-Valdur Mikelsaar, Alar Sünter, Ruth Mikelsaar, Peeter Toomik, Anu Kǒiveer, Imre Mikelsaar, Erkki Juronen
Software Mentions: 1
Published: almost 15 years ago

10.1111/cmi.12050

Diversion of phagosome trafficking by pathogenic <i> <scp>R</scp> hodococcus equi </i> depends on mycolic acid chain length
Cited by: 22
Author(s): Tobias Sydor, Kristine von Bargen, Fong‐Fu Hsu, Gitta Huth, Otto Holst, Jens Wohlmann, Ulrike Becken, Tobias Dykstra, Kristina Söhl, Buko Lindner, John F. Prescott, Ulrich E. Schaible, Olaf Utermöhlen, Albert Haas
Software Mentions: 1
Published: about 14 years ago

10.1111/j.1462-5822.2008.01162.x

Expression and processing of<i>Plasmodium berghei</i>SERA3 during liver stages
Cited by: 45
Author(s): Anja Schmidt-Christensen, Angelika Sturm, Sebastian Horstmann, Volker Heussler
Software Mentions: 1
Published: over 18 years ago

10.1111/j.1462-5822.2010.01531.x

The E Block motif is associated with<i>Legionella pneumophila</i>translocated substrates
Cited by: 165
Author(s): Lili Huang, Dana Boyd, Whitney Amyot, Andrew D. Hempstead, Zhao‐Qing Luo, Tamara J. O’Connor, Cui Chen, Matthias P. Machner, Timothy P. Montminy, Ralph R. Isberg
Software Mentions: 1
Published: about 16 years ago

10.1111/j.1462-5822.2008.01136.x

Subversion of actin dynamics by EspM effectors of attaching and effacing bacterial pathogens
Cited by: 72
Author(s): Ana Arbeloa, Richard Bulgin, Georgina MacKenzie, Robert K. Shaw, Mark J. Pallen, Valérie F. Crepin, Cédric N. Berger, Gad Frankel
Software Mentions: 1
Published: over 18 years ago

10.1186/s11658-019-0171-z

The effects of CRISPR-Cas9 knockout of the TGF-β1 gene on antler cartilage cells in vitro
Cited by: 9
Author(s): Mingxiao Liu, Xiangyu Han, Hongyun Liu, Danyang Chen, Yue Li, Wei Hu
Software Mentions: 1
Published: over 7 years ago

10.1007/s10561-018-9701-6

Multilineage potential research of Beijing duck amniotic mesenchymal stem cells
Cited by: 4
Author(s): Caiyun Ma, Kunfu Wang, Hongda Ji, Hongliang Wang, Liangcai Guo, Zhiyong Wang, Han Ren, Xishuai Wang, Weijun Guan
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-14-389

Skin transcriptome profiles associated with coat color in sheep
Cited by: 64
Author(s): Rong Fan, Jun Xie, Junming Bai, Haidong Wang, Tian Xue, Rui Bai, Xiaoyun Jia, Lei Yang, Yunfei Song, Muren Herrid, Wenjun Gao, Xu He, Jianbo Yao, George W. Smith, Changsheng Dong
Software Mentions: 1
Published: over 13 years ago

10.1186/s13148-019-0758-2

Histone methyltransferases EHMT1 and EHMT2 (GLP/G9A) maintain PARP inhibitor resistance in high-grade serous ovarian carcinoma
Cited by: 52
Author(s): Zachary L. Watson, Tomomi M. Yamamoto, Alexandra McMellen, Hyunmin Kim, Connor J. Hughes, Lindsay J. Wheeler, Miriam D. Post, Kian Behbakht, Benjamin G. Bitler
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40169-017-0140-y

Survivin a radiogenetic promoter for glioblastoma viral gene therapy independently from CArG motifs
Cited by: 10
Author(s): George E. Naoum, Zeng B. Zhu, Donald J. Buchsbaum, David T. Curiel, Waleed Arafat
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-016-2927-4

Orthologs, turn-over, and remolding of tRNAs in primates and fruit flies
Cited by: 17
Author(s): Cristian A. Velandia-Huerto, Sarah J. Berkemer, Anne Hoffmann, Nancy Retzlaff, Liliana C. Romero Marroquín, Maribel Hernández-Rosales, Peter F. Stadler, Clara Isabel Bermúdez-Santana
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-13-303

Oomycete transcriptomics database: A resource for oomycete transcriptomes
Cited by: 8
Author(s): Sucheta Tripathy, Tejal Deo, Brett M. Tyler
Software Mentions: 1
Published: almost 15 years ago

10.1038/s42003-020-1004-3

Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes
Cited by: 39
Author(s): Magdalena Całusińska, Martyna Marynowska, Marie Bertucci, Boris Untereiner, Dominika Klimek, Xavier Goux, David Sillam‐Dussès, Piotr Gawron, Rashi Halder, Paul Wilmes, Pau Ferrer, Patrick A. Gerin, Yves Roisin, Philippe Delfosse
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-021-02162-6

A human respiratory tract-associated bacterium with an extremely small genome
Cited by: 2
Author(s): Kazumasa Fukuda, Kei Yamasaki, Yoshitoshi Ogura, Toshinori Kawanami, Hiroaki Ikegami, Shingo Noguchi, Kentaro Akata, Keisuke Katsura, Kazuhiro Yatera, Hiroshi Mukae, Tetsuya Hayashi, Hatsumi Taniguchi
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-13-122

Identification of microRNAs from Amur grape (vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics
Cited by: 87
Author(s): Chen Wang, Han jinsoo, Chonghuai Liu, Korir Nicholas Kibet, Emrul Kayesh, Lingfei Shangguan, Xiaoying Li, Jinggui Fang
Software Mentions: 1
Published: over 14 years ago

10.3897/CompCytogen.v14i2.49391

Cloning and preliminary verification of telomere-associated sequences in upland cotton
Cited by: 0
Author(s): Yuling Liu, Zhen Liu, Yangyang Wei, Yanjun Wang, Jiaran Shuang, Renhai Peng
Software Mentions: 1
Published: over 6 years ago

10.1099/ijs.0.059600-0

Lactobacillus apinorum sp. nov., Lactobacillus mellifer sp. nov., Lactobacillus mellis sp. nov., Lactobacillus melliventris sp. nov., Lactobacillus kimbladii sp. nov., Lactobacillus helsingborgensis sp. nov. and Lactobacillus kullabergensis sp. nov., isolated from the honey stomach of the honeybee Apis mellifera
Cited by: 152
Author(s): Tobias Olofsson, Magnus Alsterfjord, Bo Nilson, E. I. Butler, Alejandra Vásquez
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-8-434

The TriTryp Phosphatome: analysis of the protein phosphatase catalytic domains
Cited by: 90
Author(s): Rachel Brenchley, Humera Tariq, Helen McElhinney, Balázs Szöőr, Julie Huxley-Jones, Robert Stevens, Keith R. Matthews, Lydia Tabernero
Software Mentions: 1
Published: almost 19 years ago

10.1186/s12864-015-2185-x

Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon
Cited by: 25
Author(s): Joëlle Amselem, Marielle Vigouroux, Simone Oberhaensli, J. K. M. Brown, Laurence V. Bindschedler, Pari Skamnioti, Thomas Wicker, Pietro D. Spanu, Hadi Quesneville, Soledad Sacristán
Software Mentions: 1
Published: about 11 years ago

10.1128/AEM.00282-16

Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura)
Cited by: 59
Author(s): Bret M. Boyd, Julie M. Allen, Ryuichi Koga, Takema Fukatsu, Andrew D. Sweet, Kevin P. Johnson, David L. Reed
Software Mentions: 1
Published: over 10 years ago

10.1099/ijsem.0.004763

Motilimonas cestriensis sp. nov., isolated from an inland brine spring in Northern England
Cited by: 5
Author(s): Matthew Kelbrick, Raeid M. M. Abed, André Antunes
Software Mentions: 1
Published: over 7 years ago

10.1007/s00284-021-02503-y

Consuming Different Structural Parts of Bamboo Induce Gut Microbiome Changes in Captive Giant Pandas
Cited by: 8
Author(s): Zheng Yan, Qin Xu, Walter H. Hsu, Stephan Schmitz Esser, James Ayala, Rong Hou, Ying Yao, Dandan Jiang, Shibin Yuan, Hairui Wang
Software Mentions: 1
Published: over 5 years ago

10.1093/dnares/dsu008

In Silico Identification and Experimental Validation of Insertion-Deletion Polymorphisms in Tomato Genome
Cited by: 43
Author(s): Jingjing Yang, Yuanyuan Wang, Huolin Shen, Wencai Yang
Software Mentions: 1
Published: over 12 years ago

10.1016/j.dib.2018.05.131

A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data
Cited by: 4
Author(s): Vishal Singh Somvanshi, Olivia Ghosh, Roli Budhwar, Bhumika Dubay, Rohit Nandan Shukla, Uma Rao
Software Mentions: 1
Published: over 8 years ago

10.1016/j.dib.2015.04.012

Phospho-iTRAQ data article: Assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry
Cited by: 1
Author(s): Pieter Glibert, Paulien Meert, Katleen Van Steendam, Lennart Martens, Dieter Deforce, Maarten Dhaenens
Software Mentions: 1
Published: about 11 years ago

10.1016/j.dib.2020.105898

Draft-genome sequence data and phylogenomic comparison of two marine-sourced bacterial strains Pseudoalteromonas sp. MIP2626 and Psychrobacter sp. BI730
Cited by: 2
Author(s): Caroline Isabel Kothe, Christine Delbarre-Ladrat, Pierre Renault, Delphine Passerini
Software Mentions: 1
Published: over 6 years ago

10.1093/database/bav002

FR database 1.0: a resource focused on fruit development and ripening
Cited by: 6
Author(s): Junyang Yue, Xiaojing Ma, Rongjun Ban, Qianli Huang, Wenjie Wang, Jia Liu, Yongsheng Liu
Software Mentions: 1
Published: over 11 years ago

10.1093/database/bau035

TuberQ: a Mycobacterium tuberculosis protein druggability database
Cited by: 30
Author(s): Leandro Radusky, Lucas A. Defelipe, Esteban Lanzarotti, F. Javier Luque, Xavier Barril, Marcelo Adrian Marti, Adrián Turjanski
Software Mentions: 1
Published: over 12 years ago

10.1093/database/baaa049

RNAWRE: a resource of writers, readers and erasers of RNA modifications
Cited by: 13
Author(s): Fulei Nie, Pengmian Feng, Xiaoming Song, Meng Wu, Qiang Tang, Wei Chen
Software Mentions: 1
Published: almost 7 years ago

10.1093/database/baz092

Combined alignments of sequences and domains characterize unknown proteins with remotely related protein search PSISearch2D
Cited by: 1
Author(s): Minglei Yang, Wenliang Zhang, Yao GuoCai, Haiyue Zhang, Weizhong Li
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-12-S2-S6

CAMBer: an approach to support comparative analysis of multiple bacterial strains
Cited by: 19
Author(s): Michał Woźniak, Limsoon Wong, Jerzy Tiuryn
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-14-551

Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range
Cited by: 71
Author(s): Neha Jalan, Dibyendu Kumar, Maxuel O. Andrade, Fahong Yu, Jeffrey B. Jones, James H. Graham, Frank F. White, João Carlos Setúbal, Nian Wang
Software Mentions: 1
Published: over 13 years ago

10.15252/emmm.201606924

Y <scp>RNA</scp> fragment in extracellular vesicles confers cardioprotection via modulation of <scp>IL</scp> ‐10 expression and secretion
Cited by: 157
Author(s): Linda Cambier, Geoffrey de Couto, Ahmed Ibrahim, Antonio Echavez, Jackelyn Valle, Weixin Liu, Michelle Kreke, Rachel Smith, Linda Marbán, Eduardo Marbán
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2164-13-135

A Gaijin-like miniature inverted repeat transposable element is mobilized in rice during cell differentiation
Cited by: 19
Author(s): Hua Dong, Lu Zhang, Zheng Kangle, Haigen Yao, Jack Chen, Feng-Chi Yu, Xiaoxing Yu, Bizeng Mao, Dong Zhang, Jian Yao, Debao Li
Software Mentions: 1
Published: over 14 years ago

10.15252/embr.201744102

Evolutionary dynamics of the kinetochore network in eukaryotes as revealed by comparative genomics
Cited by: 190
Author(s): Jolien J. E. van Hooff, Eelco C. Tromer, Leny M. van Wijk, Berend Snel, Geert J. P. L. Kops
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-019-5721-2

Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea
Cited by: 19
Author(s): Zengxiang Wu, Kaining Hu, Mei Yan, Liping Song, Jing Wen, Chaozhi Ma, Jinxiong Shen, FU Ting-dong, Jinxing Tu
Software Mentions: 1
Published: over 7 years ago

10.1002/ece3.7162

Ancient DNA preserved in small bone fragments from the P.W. Lund collection
Cited by: 9
Author(s): Frederik Valeur Seersholm, Kasper Lykke Hansen, Matthew J. Heydenrych, Anders J. Hansen, Michael Bunce, Morten E. Allentoft
Software Mentions: 1
Published: almost 6 years ago

10.1002/ece3.624

Inferences of evolutionary history of a widely distributed mangrove species,<i>Bruguiera gymnorrhiza</i>, in the Indo-West Pacific region
Cited by: 34
Author(s): Chie Urashi, Kenjiro Teshima, Sumiko Minobe, Osamu Koizumi, Norio Inomata
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-017-4210-8

Diatom flagellar genes and their expression during sexual reproduction in Leptocylindrus danicus
Cited by: 12
Author(s): Deepak Nanjappa, Remo Sanges, Maria Immacolata Ferrante, Adriana Zingone
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-017-3952-7

The adaptive landscape of wildtype and glycosylation-deficient populations of the industrial yeast Pichia pastoris
Cited by: 9
Author(s): Josef W. Moser, Iain B. H. Wilson, Martin Dragosits
Software Mentions: 1
Published: over 9 years ago

10.1099/ijs.0.010249-0

Construction of an interactive online phytoplasma classification tool, iPhyClassifier, and its application in analysis of the peach X-disease phytoplasma group (16SrIII)
Cited by: 463
Author(s): Yan Zhao, Wei Wei, Ing‐Ming Lee, Jonathan Shao, Xiaobing Suo, Robert E. Davis
Software Mentions: 1
Published: over 17 years ago

10.3390/antiox7110164

Characterization of TrxC, an Atypical Thioredoxin Exclusively Present in Cyanobacteria
Cited by: 6
Author(s): Luis López‐Maury, Luis G. Heredia-Martínez, Francisco J. Florencio
Software Mentions: 1
Published: about 8 years ago

10.1002/ece3.4754

Effects of a presumably protective endosymbiont on life‐history characters and their plasticity for its host aphid on three plants
Cited by: 10
Author(s): Shirong Liu, Deguang Liu, Rongfang Zhang, Yingting Zhai, Xianliang Huang, Da Wang, Xiaoqin Shi
Software Mentions: 1
Published: almost 8 years ago

10.1080/22221751.2020.1727299

HIV-1 did not contribute to the 2019-nCoV genome
Cited by: 38
Author(s): Chuan Xiao, Xiaojun Li, Shuying Liu, Yongming Sang, Shuang Gao, Feng Gao
Software Mentions: 1
Published: almost 7 years ago

10.1099/ijsem.0.004866

Mangrovivirga cuniculi gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family Mangrovivirgaceae fam. nov.
Cited by: 12
Author(s): Fatmah O. Sefrji, Grégoire Michoud, Ramona Marasco, Giuseppe Merlino, Daniele Daffonchio
Software Mentions: 1
Published: over 5 years ago

10.1099/ijsem.0.003935

Division of the genus Chryseobacterium: Observation of discontinuities in amino acid identity values, a possible consequence of major extinction events, guides transfer of nine species to the genus Epilithonimonas, eleven species to the genus Kaistella, and three species to the genus Halpernia gen. nov., with description of Kaistella daneshvariae sp. nov. and Epilithonimonas vandammei sp. nov. derived from clinical specimens
Cited by: 201
Author(s): Ainsley Nicholson, Christopher A. Gulvik, Anne M. Whitney, Ben W. Humrighouse, Melissa Bell, B. Holmes, A G Steigerwalt, Aaron Villarma, Mili Sheth, Dhwani Batra, Lori A. Rowe, Mark Burroughs, Jessica C Pryor, Jean‐François Bernardet, Celia J. Hugo, Peter Kämpfer, Jeffrey D. Newman, John R. McQuiston
Software Mentions: 1
Published: over 6 years ago

10.1002/elsc.202000038

A novel LysR‐type regulator negatively affects biosynthesis of the immunosuppressant brasilicardin
Cited by: 3
Author(s): Marcin Wolański, Michał Krawiec, Paul N. Schwarz, Evi Stegmann, Wolfgang Wohlleben, Anina Buchmann, Harald Gross, Michael Eitel, Pierre Koch, Alma Botas, Cármen Méndez, Luz Elena Núñez, Francisco Morís, Jesús M. Cortés, Jolanta Zakrzewska‐Czerwińska
Software Mentions: 1
Published: about 6 years ago

10.1128/AAC.02496-16

<i>ERG11</i> Gene Mutations and <i>MDR1</i> Upregulation Confer Pan-Azole Resistance in Candida tropicalis Causing Disseminated Candidiasis in an Acute Lymphoblastic Leukemia Patient on Posaconazole Prophylaxis
Cited by: 21
Author(s): Liangshun You, W. Qian, Qing Yang, Liping Mao, Lan Zhu, Xianbo Huang, Jie Jin, Haitao Meng
Software Mentions: 1
Published: over 9 years ago

10.1111/j.1462-2920.2008.01861.x

High abundance of virulence gene homologues in marine bacteria
Cited by: 88
Author(s): Olof P. Persson, Jarone Pinhassi, Lasse Riemann, Britt-Inger Marklund, Mikael Rhen, Staffan Normark, José M. González, Åke Hagström
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-15-220

Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process
Cited by: 83
Author(s): Aurélien Brionne, Yves Nys, Christelle Hennequet-Antier, Joël Gautron
Software Mentions: 1
Published: over 12 years ago

10.1111/j.1462-2920.2009.01900.x

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
Cited by: 426
Author(s): Mirjana Rajilić‐Stojanović, Hans G.H.J. Heilig, Douwe Molenaar, Kajsa Kajander, Anu Surakka, Hauke Smidt, Willem M. de Vos
Software Mentions: 1
Published: over 17 years ago

10.1111/j.1462-2920.2012.02746.x

Ciliate and bacterial communities associated with White Syndrome and Brown Band Disease in reef‐building corals
Cited by: 88
Author(s): Michael Sweet, John C. Bythell
Software Mentions: 1
Published: over 14 years ago