Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: blast
https://packages.ecosyste.ms/registries/pypi.org/packages/blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
3 versions
Latest release: over 12 years ago
120 downloads last month
Papers Mentioning blast 1,819
10.1111/j.1365-2958.2009.06829.x
Two-enzyme systems for glycolipid and polyglycerolphosphate lipoteichoic acid synthesis in<i>Listeria monocytogenes</i>Cited by: 91
Author(s): Alexander J. Webb, Maria Karatsa-Dodgson, Angelika Gründling
Software Mentions: 1
Published: about 15 years ago
10.1186/1750-1326-2-16
Design of an improved set of oligonucleotide primers for genotyping MeCP2tm1.1BirdKO mice by PCRCited by: 18
Author(s): Julie Miralvès, Eddy Magdeleine, Etienne Joly
Software Mentions: 1
Published: over 17 years ago
10.1111/mpp.12820
An efficient method to clone TAL effector genes from <i>Xanthomonas oryzae</i> using Gibson assemblyCited by: 11
Author(s): Chenhao Li, Chonghui Ji, José C. Huguet‐Tapia, Frank F. White, Hansong Dong, Bing Yang
Software Mentions: 1
Published: over 5 years ago
10.1111/mpp.12442
Characterization of ApB73, a virulence factor important for colonization of<i>Zea mays</i>by the smut<i>Ustilago maydis</i>Cited by: 34
Author(s): Alexandra Stirnberg, Armin Djamei
Software Mentions: 1
Published: over 8 years ago
10.1111/mpp.12423
Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogen <i>Pseudomonas syringae</i>Cited by: 50
Author(s): Reuben W. Nowell, Bridget E. Laue, Paul M. Sharp, Sarah Green
Software Mentions: 1
Published: over 8 years ago
10.3897/mycokeys.27.14730
Descolea quercina (Bolbitiaceae), a new species from moist temperate forests in PakistanCited by: 5
Author(s): Junaid Khan, Hassan Sher, Arooj Naseer, Abdul Nasir Khalid
Software Mentions: 1
Published: about 7 years ago
10.3390/vaccines8010018
Alpha-Gal and Cross-Reactive Carbohydrate Determinants in the N-Glycans of Salivary Glands in the Lone Star Tick, Amblyomma americanumCited by: 20
Author(s): Yoonseong Park, Dong-Hun Kim, Gunavanthi D. Boorgula, Kristof De Schutter, Guy Smagghe, Ladislav Šimo, Stephanie Archer-Hartmann, Parastoo Azadi
Software Mentions: 1
Published: almost 5 years ago
10.1186/1297-9716-42-76
The current status and future directions of myxoma virus, a master in immune evasionCited by: 49
Author(s): Bart Spiesschaert, Grant McFadden, Katleen Hermans, Hans Nauwynck, Gerlinde R. Van de Walle
Software Mentions: 1
Published: almost 14 years ago
10.1186/1297-9716-44-16
Equine herpesvirus type 1 infection induces procoagulant activity in equine monocytesCited by: 18
Author(s): Wee Ming Yeo, Nikolaus Osterrieder, Tracy Stokol
Software Mentions: 1
Published: almost 12 years ago
10.1186/s13567-015-0181-4
Evaluation of the capability of the PCV2 genome to encode miRNAs: lack of viral miRNA expression in an experimental infectionCited by: 8
Author(s): Fernando Núñez-Hernández, Lester J. Pérez, Gonzalo Vera, Shaun-Paul Cordoba, Joaquím Segalés, Armand Sánchez, José I. Núñez
Software Mentions: 1
Published: over 9 years ago
10.14202/vetworld.2016.160-165
Expression of biologically active bovine interleukin 7 and evaluating the activity in vitroCited by: 2
Author(s): J. Lijo, Nagarjun Vijay, H J Dechamma, Golla Ramalinga Reddy
Software Mentions: 1
Published: almost 9 years ago
10.1186/1743-422X-7-17
Candidates in Astroviruses, Seadornaviruses, Cytorhabdoviruses and Coronaviruses for +1 frame overlapping genes accessed by leaky scanningCited by: 30
Author(s): Andrew E. Firth, John F. Atkins
Software Mentions: 1
Published: almost 15 years ago
10.1186/1743-422X-7-83
Polyclonal antibody against the DPV UL46M protein can be a diagnostic candidateCited by: 11
Author(s): Lijuan Lu, Anchun Cheng, Mingshu Wang, Jinfeng Jiang, Dekang Zhu, Renyong Jia, Qihui Luo, Fei Liu, Zhengli Chen, Xiaoyue Chen, Jing Yang
Software Mentions: 1
Published: over 14 years ago
10.1186/1743-422X-7-313
Metagenomic analysis of the turkey gut RNA virus communityCited by: 99
Author(s): J. Michael Day, Linda Ballard, Mary V. Duke, Brian E. Scheffler, László Zsák
Software Mentions: 1
Published: about 14 years ago
10.1186/1743-422X-11-146
Identification and characterization of unrecognized viruses in stool samples of non-polio acute flaccid paralysis children by simplified VIDISCACited by: 18
Author(s): Shahzad Shaukat, Mehar Angez, Muhammad Masroor Alam, Maarten F. Jebbink, Martin Deijs, Marta Canuti, Salman Sharif, Michèl de Vries, Adnan Khurshid, Tariq Mahmood, Lia van der Hoek, Syed Sohail Zahoor Zaidi
Software Mentions: 1
Published: over 10 years ago
10.1186/s12985-017-0701-0
Characterization and complete genome of the virulent Myoviridae phage JD007 active against a variety of Staphylococcus aureus isolates from different hospitals in Shanghai, ChinaCited by: 25
Author(s): Zelin Cui, Tingting Feng, Fei-Fei Gu, Qingtian Li, Ke Dong, Yan Zhang, Yongzhang Zhu, Lizhong Han, Jinhong Qin, Xiaokui Guo
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12985-019-1161-5
Effect of human pegivirus route of transmission on the genetic distribution of the virus: an institution based cross-sectional studyCited by: 6
Author(s): Wubet Taklual, Shixing Tang, Yijin Wu
Software Mentions: 1
Published: over 5 years ago
10.1186/s12985-019-1210-0
Identification of virion-associated transcriptional transactivator (VATT) of SGIV ICP46 promoter and their binding site on promoterCited by: 1
Author(s): Liqun Xu, Jianlin Chen, Honglian Zhang, Jia Cai, Sheng Zhou, Yue Lu
Software Mentions: 1
Published: over 5 years ago
10.1080/21505594.2020.1785815
PE_PGRS proteins of<i>Mycobacterium tuberculosis</i>: A specialized molecular task force at the forefront of host–pathogen interactionCited by: 29
Author(s): Flavio De Maio, Rita Berisio, Riccardo Manganelli, Giovanni Delogu
Software Mentions: 1
Published: over 4 years ago
10.3390/v7052470
Molecular Characterization of a Novel Positive-Sense, Single-Stranded RNA Mycovirus Infecting the Plant Pathogenic Fungus Sclerotinia sclerotiorumCited by: 26
Author(s): Rong Liu, Jiāsēn Chéng, Yànpíng Fù, Dàohóng Jiāng, Jiǎtāo Xiè
Software Mentions: 1
Published: over 9 years ago
10.3390/v9040072
MimiLook: A Phylogenetic Workflow for Detection of Gene Acquisition in Major Orthologous Groups of MegaviralesCited by: 2
Author(s): Sourabh Jain, Arup Panda, Philippe Colson, Didier Raoult, Pierre Pontarotti
Software Mentions: 1
Published: over 7 years ago
10.3390/v10030134
A Novel Betabaculovirus Isolated from the Monocot Pest Mocis latipes (Lepidoptera: Noctuidae) and the Evolution of Multiple-Copy GenesCited by: 6
Author(s): Daniel Mendes Pereira Ardisson-Araújo, Ana Maria Rodrigues da Silva, Fernando Lucas Melo, Ethiane Rozo dos Santos, Daniel Ricardo Sosa–Gómez, Bergmann Morais Ribeiro
Software Mentions: 1
Published: almost 7 years ago
10.3390/v11030211
Identification of A Novel Picorna-Like Virus, Burpengary Virus, that is Negatively Associated with Chlamydial Disease in the KoalaCited by: 6
Author(s): Erin Harvey, Danielle Madden, Adam Polkinghorne, Edward C. Holmes
Software Mentions: 1
Published: almost 6 years ago
10.3390/v13020334
Improving the Inhibitory Effect of Phages against Pseudomonas aeruginosa Isolated from a Burn Patient Using a Combination of Phages and AntibioticsCited by: 21
Author(s): Bahareh Lashtoo Aghaee, Mohammadali Khan Mirzaei, Mohammad Yousef Alikhani, Ali Mojtahedi, Corinne F. Maurice
Software Mentions: 1
Published: almost 4 years ago
10.3390/v13050901
Patterns in Genotype Composition of Indian Isolates of the Bombyx mori Nucleopolyhedrovirus and Bombyx mori BidensovirusCited by: 3
Author(s): Mudasir Gani, Sergei Senger, Satish Lokanath, Pawan Saini, Kamlesh Bali, Rakesh Kumar Gupta, V. Sivaprasad, Johannes A. Jehle, Jörg T. Wennmann
Software Mentions: 1
Published: over 3 years ago
10.1007/s11274-014-1654-8
Biodiversity of Lactobacillus plantarum from traditional Italian winesCited by: 24
Author(s): Bruno Testa, Silvia Jane Lombardi, Patrizio Tremonte, Mariantonietta Succi, Luca Tipaldi, Gianfranco Pannella, Elena Sorrentino, Massimo Iorizzo, Raffaele Coppola
Software Mentions: 1
Published: over 10 years ago
10.1002/yea.3286
Behead and live long or the tale of cathepsin LCited by: 4
Author(s): Maria Karolin Streubel, Johannes Bischof, Richard Weiss, Jutta Duschl, Wolfgang Liedl, Heinz Wimmer, Michael Breitenbach, Manuela Weber, Florian Geltinger, Klaus Richter, Mark Rinnerthaler
Software Mentions: 1
Published: about 7 years ago
10.1186/s40851-018-0089-8
Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleostsCited by: 17
Author(s): Yusuke Inoue, Masahiko Kumagai, Xianbo Zhang, Tomonori Saga, Deshou Wang, Akihiko Koga, Hiroyuki Takeda
Software Mentions: 1
Published: almost 7 years ago
10.1186/s13071-019-3843-7
Transcriptome-based analysis of putative allergens of Chorioptes texanusCited by: 1
Author(s): Ran He, Xiaobin Gu, Yue Xie, Xuerong Peng, Christiana Angel, Guangyou Yang
Software Mentions: 1
Published: about 5 years ago
10.1186/s13071-019-3540-6
Genetic diversity of human head lice and molecular detection of associated bacterial pathogens in Democratic Republic of CongoCited by: 18
Author(s): Célia Scherelle Boumbanda Koyo, Nadia Amanzougaghene, Bernard Davoust, Léon Tshilolo, Jean Bernard Lékana-Douki, Didier Raoult, Oleg Mediannikov, Florence Fénollar
Software Mentions: 1
Published: over 5 years ago
10.1186/1756-3305-6-224
Mosquitoes established in Lhasa city, Tibet, ChinaCited by: 11
Author(s): Qiyong Liu, Xiaobo Liu, Cirendunzhu, Alistair Woodward, Pengcuociren, Li Bai, Baimaciwang, Shaowei Sang, Dazhen, Fangjun Wan, Lin Zhou, Yadong Guo, Haixia Wu, Guichang Li, Liang Lu, Jun Wang, Dawa, Cordia Chu, Xiraoruodeng
Software Mentions: 1
Published: over 11 years ago
10.1186/s13071-016-1586-2
The mitochondrial genome of the egg-laying flatworm Aglaiogyrodactylus forficulatus (Platyhelminthes: Monogenoidea)Cited by: 18
Author(s): Lutz Bachmann, Bastian Fromm, Luciana Patella de Azambuja, Walter A. Boeger
Software Mentions: 1
Published: over 8 years ago
10.1186/1756-3305-2-35
Transcriptome analysis of Taenia solium cysticerci using Open Reading Frame ESTs (ORESTES)Cited by: 27
Author(s): Celso Ribeiro Almeida, Patrícia Hermes Stoco, Glauber Wagner, Thaís Cristine Marques Sincero, Gianinna Rotava, Ethel Bayer-Santos, Juliana Bürger Rodrigues, Maísa M. Sperandio, Antônio Augusto Mendes Maia, Elida P.B. Ojopi, Arnaldo Zaha, Henrique Bunselmeyer Ferreira, Kevin M. Tyler, Alberto M. R. Dávila, Edmundo C. Grisard, Emmanuel Dias-Neto
Software Mentions: 1
Published: over 15 years ago
10.1186/s13071-017-2524-7
The RIO protein kinase-encoding gene Sj-riok-2 is involved in key reproductive processes in Schistosoma japonicumCited by: 8
Author(s): Lu Zhao, Xin He, Christoph G. Grevelding, Qing Ye, Ying Liu, Robin B. Gasser, Colette Dissous, Mudassar Niaz Mughal, Yanqin Zhou, Zhao Jun, Min Hu
Software Mentions: 1
Published: about 7 years ago
10.1186/s13071-018-3151-7
Caligus rogercresseyi acetylcholinesterase types and variants: a potential marker for organophosphate resistanceCited by: 9
Author(s): Celia Agusti-Ridaura, Michael Dondrup, Tor Einar Horsberg, Jong S. Leong, Ben F. Koop, Sandra Bravo, Julio Mendoza, Kiranpreet Kaur
Software Mentions: 1
Published: about 6 years ago
10.3390/pathogens9090709
An African Canine Trypanosomosis Case Import: Is There a Possibility of Creating a Secondary Focus of Trypanosoma congolense Infection in France?Cited by: 5
Author(s): Florence Calvet, Hacène Medkour, Oleg Mediannikov, Caroline Girardet, Antoine Jacob, Mickaël Boni, Bernard Davoust
Software Mentions: 1
Published: over 4 years ago
10.3390/pathogens4020210
Pathogenicity of Isolates of Serratia Marcescens towards Larvae of the Scarab Phyllophaga Blanchardi (Coleoptera)Cited by: 34
Author(s): Mónica L. Pineda-Castellanos, Zitlhally Rodríguez-Segura, Francisco J. Villalobos, Luciano Hernández, Laura Lina, María Eugenia Nuñez-Valdez
Software Mentions: 1
Published: over 9 years ago
10.7717/peerj.7210
Determination of the evolutionary pressure on<i>Camellia oleifera</i>on Hainan Island using the complete chloroplast genome sequenceCited by: 19
Author(s): Wan Zhang, Yunlin Zhao, Guiyan Yang, Jiao Peng, Shuwen Chen, Zhenggang Xu
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.3799
Development and evaluation of rapid novel isothermal amplification assays for important veterinary pathogens:<i>Chlamydia psittaci</i>and<i>Chlamydia pecorum</i>Cited by: 40
Author(s): Martina Jelocnik, Md. Mominul Islam, Danielle Madden, Cheryl Jenkins, James Branley, Scott Carver, Adam Polkinghorne
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj.10392
A diverse global fungal library for drug discoveryCited by: 8
Author(s): Guodong Niu, Thirunavukkarasu Annamalai, Xiaohong Wang, Sheng Li, Stephen Munga, Guomin Niu, Yuk‐Ching Tse‐Dinh, Jun Li
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.2345
Selection of a marker gene to construct a reference library for wetland plants, and the application of metabarcoding to analyze the diet of wintering herbivorous waterbirdsCited by: 23
Author(s): Yefeng Yang, Aibin Zhan, Lei Cao, Fanjuan Meng, Wenbin Xu
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.5905
A real-time PCR assay for quantification of parasite burden in murine models of leishmaniasisCited by: 14
Author(s): Alejandro L. Antonia, Liuyang Wang, Dennis C. Ko
Software Mentions: 1
Published: about 6 years ago
10.7717/peerj.4345
Differential gene expression during early development in recently evolved and sympatric Arctic charr morphsCited by: 21
Author(s): Jóhannes Guðbrandsson, Sigríður Rut Franzdóttir, Bjarni K. Kristjánsson, Ehsan Pashay Ahi, Valerie H. Maier, Kalina H. Kapralova, Sigurður S. Snorrason, Zophonı́as O. Jónsson, Arnar Pálsson
Software Mentions: 1
Published: almost 7 years ago
10.7717/peerj.5452
De novo oviduct transcriptome of the moor frog Rana arvalis: a quest for maternal effect candidate genesCited by: 1
Author(s): Longfei Shu, Jie Qiu, Katja Räsänen
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.2101
Complete plastid genome sequence of<i>Primula sinensis</i>(Primulaceae): structure comparison, sequence variation and evidence for<i>accD</i>transfer to nucleusCited by: 36
Author(s): Tong-Jian Liu, Caiyun Zhang, Hai‐Fei Yan, Lu Zhang, Xue‐Jun Ge, Gang Hao
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.6154
Snake venom NAD glycohydrolases: primary structures, genomic location, and gene structureCited by: 4
Author(s): Ivan Koludarov, Steven D. Aird
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0067729
Introgressive Hybridization between Anciently Diverged Lineages of Silene (Caryophyllaceae)Cited by: 14
Author(s): Anna Petri, Bernard E. Pfeil, Bengt Oxelman
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0008361
Genome Sequence of the Endosymbiont Rickettsia peacockii and Comparison with Virulent Rickettsia rickettsii: Identification of Virulence FactorsCited by: 115
Author(s): Roderick F. Felsheim, Timothy J. Kurtti, Ulrike G. Munderloh
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0154609
Genotyping by Sequencing Using Specific Allelic Capture to Build a High-Density Genetic Map of Durum WheatCited by: 22
Author(s): Yan Holtz, Morgane Ardisson, Vincent Ranwez, Alban Besnard, Philippe Leroy, Gérard Poux, Pierre Roumet, Véronique Viader, Sylvain Santoni, Jacques David
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0114568
Identification of Regulatory Genes Implicated in Continuous Flowering of Longan (Dimocarpus longan L.)Cited by: 26
Author(s): Tianqi Jia, Danfeng Wei, Shu Meng, Andrew C. Allan, Lihui Zeng
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0211061
Blast resistance in Indian rice landraces: Genetic dissection by gene specific markersCited by: 28
Author(s): Manoj Kumar Yadav, S Aravindan, Umakanta Ngangkham, S. Raghu, S.R. Prabhukarthikeyan, U. Keerthana, Bishnu Charan Marndi, Totan Adak, Sushmita Munda, Rupesh Deshmukh, D. Pramesh, Sanghamitra Samantaray, Prakash Chandra Rath
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0150892
Transcriptomic Analysis of Differentially Expressed Genes during Flower Organ Development in Genetic Male Sterile and Male Fertile Tagetes erecta by Digital Gene-Expression ProfilingCited by: 18
Author(s): Ye Ai, Qinghua Zhang, Weining Wang, Chunyu Zhang, Zhe Cao, Manzhu Bao, Yan‐Hong He
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0076957
Transcriptome-Mining for Single-Copy Nuclear Markers in FernsCited by: 65
Author(s): Carl J. Rothfels, Anders Larsson, Fay‐Wei Li, Erin M. Sigel, Layne Huiet, Dylan O. Bürge, Markus Ruhsam, Sean W. Graham, D. W. Stevenson, Gane Ka‐Shu Wong, Petra Korall, Kathleen M. Pryer
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0153810
The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-BindingCited by: 26
Author(s): Nora Gutsche, Sabine Zachgo
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0020968
Haloquadratum walsbyi : Limited Diversity in a Global PondCited by: 99
Author(s): Mike Dyall‐Smith, Friedhelm Pfeiffer, Kathrin Klee, Peter Palm, Karin Gross, Stephan C. Schuster, Markus Rampp, Dieter Oesterhelt
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0005010
The Early Apoptotic DNA Fragmentation Targets a Small Number of Specific Open Chromatin RegionsCited by: 15
Author(s): Miriam Di Filippo, Giorgio Bernardi
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0097431
Single Nucleotide Polymorphisms Reveal Genetic Structuring of the Carpathian Newt and Provide Evidence of Interspecific Gene Flow in the Nuclear GenomeCited by: 21
Author(s): Piotr Zieliński, Katarzyna Dudek, Michał Stuglik, Marcin Liana, Wiesław Babik
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0026411
Differential Gene Expression at Coral Settlement and Metamorphosis - A Subtractive Hybridization StudyCited by: 48
Author(s): David C. Hayward, Suzannah Hetherington, Carolyn A. Behm, Lauretta C. Grasso, Sylvain Forêt, David J. Miller, Eldon E. Ball
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0158112
Fungal Elicitor MoHrip2 Induces Disease Resistance in Rice Leaves, Triggering Stress-Related PathwaysCited by: 7
Author(s): Najeeb Ullah Khan, Mengjie Liu, Xiufen Yang, Dewen Qiu
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0004413
A Comparative Chemogenomics Strategy to Predict Potential Drug Targets in the Metazoan Pathogen, Schistosoma mansoniCited by: 94
Author(s): Conor R. Caffrey, Andreas Rohwer, Frank Oellien, Richard J. Marhöfer, Bryony Braschi, Guilherme Oliveira, James H. McKerrow, Paul M. Selzer
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0069743
Genome-Wide Analysis of Small RNA and Novel MicroRNA Discovery during Fiber and Seed Initial Development in Gossypium hirsutum. LCited by: 17
Author(s): Hua Zhang, Qun Wan, Wenxue Ye, Yuanda Lv, Huaitong Wu, Tianzhen Zhang
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0151186
Proteomic Analysis of the Secretome of Cellulomonas fimi ATCC 484 and Cellulomonas flavigena ATCC 482Cited by: 19
Author(s): Warren W. Wakarchuk, Denis Brochu, Simon J. Foote, Anna Robotham, Hirak Saxena, Tamara Erak, John Kelly
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0056697
Overexpression of the Artemisia Orthologue of ABA Receptor, AaPYL9, Enhances ABA Sensitivity and Improves Artemisinin Content in Artemisia annua LCited by: 43
Author(s): Fangyuan Zhang, Xu Lu, Zongyou Lv, Ling Zhang, Mengmeng Zhu, Weimin Jiang, Guofeng Wang, Xiaofen Sun, Kexuan Tang
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0003764
Clostridium perfringens Delta Toxin Is Sequence Related to Beta Toxin, NetB, and Staphylococcus Pore-Forming Toxins, but Shows Functional DifferencesCited by: 45
Author(s): Maria Manich, Oliver Knapp, Maryse Gibert, Elke Maier, Colette Jolivet-Reynaud, Blandine Geny, Roland Benz, Michel R. Popoff
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pone.0116457
Strain-Level Diversity of Secondary Metabolism in Streptomyces albusCited by: 82
Author(s): Ryan F. Seipke
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0025973
Regulation of DCC Localization by HTZ-1/H2A.Z and DPY-30 Does not Correlate with H3K4 Methylation LevelsCited by: 7
Author(s): Emily L. Petty, Emily Laughlin, Györgyi Csankovszki
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0184528
Development of hop transcriptome to support research into host-viroid interactionsCited by: 24
Author(s): Tine Pokorn, Sebastjan Radišek, Branka Javornik, Nataša Štajner, Jernej Jakše
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0069955
Genome Wide Analysis of the Apple MYB Transcription Factor Family Allows the Identification of MdoMYB121 Gene Confering Abiotic Stress Tolerance in PlantsCited by: 156
Author(s): Zhong-Hui Cao, Shizhong Zhang, Rong-Kai Wang, Ruifen Zhang, Yu‐Jin Hao
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0015388
Structural Relationships in the Lysozyme Superfamily: Significant Evidence for Glycoside Hydrolase Signature MotifsCited by: 82
Author(s): A. Wohlkonig, Joëlle Huet, Yvan Looze, René Wintjens
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0094779
Analysis of Insecticide Resistance-Related Genes of the Carmine Spider Mite Tetranychus cinnabarinus Based on a De Novo Assembled TranscriptomeCited by: 37
Author(s): Zhenbo Xu, Wenyi Zhu, Yanchao Liu, Xing Liu, Qiushuang Chen, Peng Miao, Xiangzun Wang, Guangmao Shen, Lin He
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0195138
Genome-wide identification of wheat (Triticum aestivum) expansins and expansin expression analysis in cold-tolerant and cold-sensitive wheat cultivarsCited by: 20
Author(s): Junfeng Zhang, Yongqing Xu, J. Q. Dong, Lina Peng, Feng Xu, Xu Wang, Fĕi Li, Miao Yu, Shu-Kuan Yao, Qing Shan Zhao, Shanshan Feng, HU Bao-zhong
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0057464
Pseudomonas syringae pv. actinidiae from Recent Outbreaks of Kiwifruit Bacterial Canker Belong to Different Clones That Originated in ChinaCited by: 119
Author(s): Margaret I. Butler, Peter A. Stockwell, Michael A. Black, Robert C. Day, Iain L. Lamont, Russell T. M. Poulter
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0164293
Genome-Wide Association of Stem Water Soluble Carbohydrates in Bread WheatCited by: 31
Author(s): Yan Dong, Jindong Liu, Yan Zhang, Hao Geng, Awais Rasheed, Yonggui Xiao, Shuanghe Cao, Luping Fu, Jun Yan, Weie Wen, Zhang Yong, Ruilian Jing, Xianchun Xia, Zhonghu He
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0064799
Draft Genome Sequence, and a Sequence-Defined Genetic Linkage Map of the Legume Crop Species Lupinus angustifolius LCited by: 99
Author(s): Huaan Yang, Ye Tao, Zequn Zheng, Qisen Zhang, Gaofeng Zhou, Mark Sweetingham, John Howieson, Chengdao Li
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0226107
Optimizing sgRNA length to improve target specificity and efficiency for the GGTA1 gene using the CRISPR/Cas9 gene editing systemCited by: 26
Author(s): Anders W. Matson, Nora Hosny, Zachary Swanson, Bernhard J. Hering, Christopher Burlak
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0106649
Two Low Coverage Bird Genomes and a Comparison of Reference-Guided versus De Novo Genome AssembliesCited by: 25
Author(s): Daren C. Card, Drew R. Schield, Jacobo Reyes-Velasco, Matthew K. Fujita, Audra L. Andrew, Sara J. Oyler‐McCance, Jennifer A. Fike, Diana F. Tomback, Robert P. Ruggiero, Todd A. Castoe
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0126138
Convergent Evolution at the Gametophytic Self-Incompatibility System in Malus and PrunusCited by: 43
Author(s): Bruno Aguiar, Jorge Vieira, Ana Cunha, Nuno A. Fonseca, Amy Iezzoni, Steve van Nocker, Cristina Vieira
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0137925
Transcriptome Analysis Reveals Key Flavonoid 3′-Hydroxylase and Flavonoid 3′,5′-Hydroxylase Genes in Affecting the Ratio of Dihydroxylated to Trihydroxylated Catechins in Camellia sinensisCited by: 40
Author(s): Kang Wei, Liyuan Wang, Chengcai Zhang, Liyun Wu, Hailin Li, Fen Zhang
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0104518
Transcriptional Profiling in Rat Hair Follicles following Simulated Blast Insult: A New Diagnostic Tool for Traumatic Brain InjuryCited by: 5
Author(s): Jing Zhang, Lisa Carnduff, Grant Norman, Tyson Josey, Yushan Wang, Thomas W. Sawyer, Christopher J. Martyniuk, Valérie S. Langlois
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0175569
New insights into valve-related intramural and intracellular bacterial diversity in infective endocarditisCited by: 22
Author(s): Andreas Oberbach, Nadine Schlichting, Stefan Feder, Stefanie Lehmann, Yvonne Kullnick, Tilo Buschmann, Conny Blumert, Friedemann Horn, Jochen Neuhaus, Ralph Neujahr, Erik Bagaev, Christian Hagl, Maximilian Pichlmaier, Arne C. Rodloff, Sandra Gräber, Katharina Kirsch, Monica Sandri, Vivek Kumbhari, Armirhossein Behzadi, Amirali Behzadi, João Carlos Correia, Friedrich W. Mohr, M. Friedrich
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0144275
Investigation of a Quadruplex-Forming Repeat Sequence Highly Enriched in Xanthomonas and Nostoc sp.Cited by: 12
Author(s): Charlotte Rehm, Lena A. Wurmthaler, Yuanhao Li, Tancred Frickey, Jörg S. Hartig
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0154582
Mitochondrial DNA Rearrangement Spectrum in Brain Tissue of Alzheimer’s Disease: Analysis of 13 CasesCited by: 12
Author(s): Yucai Chen, Changsheng Liu, W. Davis Parker, Hongyi Chen, Thomas G. Beach, Xinhua Liu, Geidy E. Serrano, Yanfen Lu, Jian Huang, Kunfang Yang, Chunmei Wang
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0124617
Whole Genome Sequencing of Elite Rice Cultivars as a Comprehensive Information Resource for Marker Assisted SelectionCited by: 64
Author(s): Jorge Duitama, Alexander Silva, Yamid Sanabria Gongora, Daniel Felipe Cruz, Constanza Quintero, Carolina Ballen, Mathias Lorieux, Brian E. Scheffler, Andrew Farmer, Edgar Torres, James H. Oard, Joe Tohmé
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0169116
Production of Secondary Metabolites in Extreme Environments: Food- and Airborne Wallemia spp. Produce Toxic Metabolites at Hypersaline ConditionsCited by: 36
Author(s): Sašo Jančič, Jens Christian Frisvad, Dragi Kocev, Cene Gostinčar, Sašo Džeroski, Nina Gunde‐Cimerman
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0047901
Osteopontin-Enhanced Hepatic Metastasis of Colorectal Cancer CellsCited by: 39
Author(s): Jianjin Huang, Pan Chi, Hanguang Hu, Shu Zheng, Ling Ding
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0043331
Global Transcriptome Analysis of the Scorpion Centruroides noxius: New Toxin Families and Evolutionary Insights from an Ancestral Scorpion SpeciesCited by: 66
Author(s): Martha Rendón-Anaya, Luis Delaye, Lourival D. Possani, Alfredo Herrera-Estrella
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0067824
The Effects of a Probiotic Yeast on the Bacterial Diversity and Population Structure in the Rumen of CattleCited by: 129
Author(s): Eric Pinloche, Neil R. McEwan, Jean-Philippe Marden, Corine Bayourthe, Eric Auclair, C. J. Newbold
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0092621
SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic ChromosomesCited by: 95
Author(s): Guénola Drillon, Alessandra Carbone, Gilles Fischer
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0102963
High-Throughput Sequencing and De Novo Assembly of the Isatis indigotica TranscriptomeCited by: 30
Author(s): Xiao‐Qing Tang, Yunhua Xiao, Tingting Lv, Fangquan Wang, Qian Zhu, Tianqing Zheng, Jie Yang
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0212005
Secreted frizzled related protein is a target of PaxB and plays a role in aquiferous system development in the freshwater sponge, Ephydatia muelleriCited by: 7
Author(s): Chelsea Hall, Melanie Rodriguez, Josephine Garcia, Dora Posfai, Rachel DuMez, Erik Wictor, Omar A. Quintero, Malcolm Hill, Ajna S. Rivera, Andrew P. Hill
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0113821
Subgenotypes and Mutations in the S and Polymerase Genes of Hepatitis B Virus Carriers in the West Bank, PalestineCited by: 15
Author(s): Abdelnabi Zakeih, Niveen Saleh, Sabri Baraghithi, Dieter Glebe, Maysa Azzeh
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0002654
The Actinome of Dictyostelium discoideum in Comparison to Actins and Actin-Related Proteins from Other OrganismsCited by: 34
Author(s): Jayabalan M. Joseph, Petra Fey, Nagendran Ramalingam, Xiao I. Liu, Meino Rohlfs, Angelika A. Noegel, Annette Müller‐Taubenberger, Gernot Glöckner, Michael Schleicher
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0166873
Quantitative Trait Locus Analysis of Late Leaf Spot Resistance and Plant-Type-Related Traits in Cultivated Peanut (Arachis hypogaea L.) under Multi-EnvironmentsCited by: 36
Author(s): Xiaojing Zhou, Youlin Xia, Liao Jun-hua, Kede Liu, Qiang Li, Yang Dong, Xiaoping Ren, Yuning Chen, Li Huang, Boshou Liao, Yong Lei, Liying Yan, Huifang Jiang
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0094091
Basic Helix-Loop-Helix Transcription Factor Bmsage Is Involved in Regulation of fibroin H-chain Gene via Interaction with SGF1 in Bombyx moriCited by: 29
Author(s): Xiaoming Zhao, Chun Lei, Qiongyan Li, Wenbo Hu, Mengting Zhou, Hongyi Nie, Yinxia Zhang, Zhangchuan Peng, Ping Zhao, Qingyou Xia
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0136625
Characterization of Two Metal Binding Lipoproteins as Vaccine Candidates for Enterococcal InfectionsCited by: 21
Author(s): Felipe Romero-Saavedra, Diana Laverde, Aurélie Budin-Verneuil, Cécile Muller, Benoı̂t Bernay, Abdellah Benachour, Axel Hartke, Johannes Hüebner
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0213566
Correction: Blast resistance in Indian rice landraces: Genetic dissection by gene specific markersCited by: 11
Author(s): Manoj Kumar Yadav, S Aravindan, Umakanta Ngangkham, S. Raghu, S.R. Prabhukarthikeyan, U. Keerthana, Bishnu Charan Marndi, Totan Adak, Sushmita Munda, Rupesh Deshmukh, D. Pramesh, Sanghamitra Samantaray, Prakash Chandra Rath
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0078275
Diversity and Spatial Distribution of Hydrazine Oxidoreductase (hzo) Gene in the Oxygen Minimum Zone Off Costa RicaCited by: 31
Author(s): Linggang Kong, Hongmei Jing, Takafumi Kataoka, Carolyn Buchwald, Hongbin Liu
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0093894
LIMLE, a New Molecule Over-Expressed following Activation, Is Involved in the Stimulatory Properties of Dendritic CellsCited by: 1
Author(s): Laëtitia Le Texier, Justine Durand, Amélie Lavault, Philippe Hulin, Olivier Collin, Yvan Le Bras, Maria‐Cristina Cuturi, Elise Chiffoleau
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0068260
A Superfamily of DNA Transposons Targeting Multicopy Small RNA GenesCited by: 25
Author(s): Kenji Kojima, Jerzy Jurka
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0147197
Insight into the Salivary Gland Transcriptome of Lygus lineolaris (Palisot de Beauvois)Cited by: 22
Author(s): Kurt C. Showmaker, Andrea Bednářová, Cathy Gresham, Chuan-Yu Hsu, Daniel G. Peterson, Natraj Krishnan
Software Mentions: 1
Published: almost 9 years ago